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Fusion Gene Summary | |
Fusion Gene ORF analysis | |
Fusion Genomic Features | |
Fusion Protein Features | |
Fusion Gene Sequence | |
Fusion Gene PPI analysis | |
Related Drugs | |
Related Diseases |
Fusion gene:ZFAND1-RBPMS (FusionGDB2 ID:100201) |
Fusion Gene Summary for ZFAND1-RBPMS |
Fusion gene summary |
Fusion gene information | Fusion gene name: ZFAND1-RBPMS | Fusion gene ID: 100201 | Hgene | Tgene | Gene symbol | ZFAND1 | RBPMS | Gene ID | 79752 | 11030 |
Gene name | zinc finger AN1-type containing 1 | RNA binding protein, mRNA processing factor | |
Synonyms | - | HERMES | |
Cytomap | 8q21.13 | 8p12 | |
Type of gene | protein-coding | protein-coding | |
Description | AN1-type zinc finger protein 1zinc finger AN1-type-containing protein 1zinc finger, AN1-type domain 1 | RNA-binding protein with multiple splicingRNA binding protein with multiple splicingheart and RRM expressed sequence | |
Modification date | 20200313 | 20200327 | |
UniProtAcc | . | . | |
Ensembl transtripts involved in fusion gene | ENST00000523096, ENST00000220669, ENST00000522520, ENST00000519338, ENST00000521895, ENST00000521287, ENST00000517588, ENST00000519523, | ENST00000538486, ENST00000397323, ENST00000320203, ENST00000287771, ENST00000339877, ENST00000517860, ENST00000520161, ENST00000519647, ENST00000520191, ENST00000520916, | |
Fusion gene scores | * DoF score | 5 X 4 X 3=60 | 17 X 16 X 8=2176 |
# samples | 5 | 20 | |
** MAII score | log2(5/60*10)=-0.263034405833794 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(20/2176*10)=-3.44360665147561 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
Context | PubMed: ZFAND1 [Title/Abstract] AND RBPMS [Title/Abstract] AND fusion [Title/Abstract] | ||
Most frequent breakpoint | ZFAND1(82627038)-RBPMS(30361802), # samples:1 | ||
Anticipated loss of major functional domain due to fusion event. |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
Partner | Gene | GO ID | GO term | PubMed ID |
Tgene | RBPMS | GO:0010862 | positive regulation of pathway-restricted SMAD protein phosphorylation | 17099224 |
Tgene | RBPMS | GO:0060391 | positive regulation of SMAD protein signal transduction | 17099224 |
Fusion gene breakpoints across ZFAND1 (5'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
Fusion gene breakpoints across RBPMS (3'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Source | Disease | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
ChimerDB4 | OV | TCGA-13-0727 | ZFAND1 | chr8 | 82627038 | - | RBPMS | chr8 | 30361802 | + |
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Fusion Gene ORF analysis for ZFAND1-RBPMS |
Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
Frame-shift | ENST00000523096 | ENST00000538486 | ZFAND1 | chr8 | 82627038 | - | RBPMS | chr8 | 30361802 | + |
Frame-shift | ENST00000523096 | ENST00000397323 | ZFAND1 | chr8 | 82627038 | - | RBPMS | chr8 | 30361802 | + |
Frame-shift | ENST00000523096 | ENST00000320203 | ZFAND1 | chr8 | 82627038 | - | RBPMS | chr8 | 30361802 | + |
Frame-shift | ENST00000523096 | ENST00000287771 | ZFAND1 | chr8 | 82627038 | - | RBPMS | chr8 | 30361802 | + |
Frame-shift | ENST00000523096 | ENST00000339877 | ZFAND1 | chr8 | 82627038 | - | RBPMS | chr8 | 30361802 | + |
Frame-shift | ENST00000523096 | ENST00000517860 | ZFAND1 | chr8 | 82627038 | - | RBPMS | chr8 | 30361802 | + |
5CDS-5UTR | ENST00000523096 | ENST00000520161 | ZFAND1 | chr8 | 82627038 | - | RBPMS | chr8 | 30361802 | + |
5CDS-5UTR | ENST00000523096 | ENST00000519647 | ZFAND1 | chr8 | 82627038 | - | RBPMS | chr8 | 30361802 | + |
5CDS-5UTR | ENST00000523096 | ENST00000520191 | ZFAND1 | chr8 | 82627038 | - | RBPMS | chr8 | 30361802 | + |
5CDS-intron | ENST00000523096 | ENST00000520916 | ZFAND1 | chr8 | 82627038 | - | RBPMS | chr8 | 30361802 | + |
Frame-shift | ENST00000220669 | ENST00000538486 | ZFAND1 | chr8 | 82627038 | - | RBPMS | chr8 | 30361802 | + |
Frame-shift | ENST00000220669 | ENST00000397323 | ZFAND1 | chr8 | 82627038 | - | RBPMS | chr8 | 30361802 | + |
Frame-shift | ENST00000220669 | ENST00000320203 | ZFAND1 | chr8 | 82627038 | - | RBPMS | chr8 | 30361802 | + |
Frame-shift | ENST00000220669 | ENST00000287771 | ZFAND1 | chr8 | 82627038 | - | RBPMS | chr8 | 30361802 | + |
Frame-shift | ENST00000220669 | ENST00000339877 | ZFAND1 | chr8 | 82627038 | - | RBPMS | chr8 | 30361802 | + |
Frame-shift | ENST00000220669 | ENST00000517860 | ZFAND1 | chr8 | 82627038 | - | RBPMS | chr8 | 30361802 | + |
5CDS-5UTR | ENST00000220669 | ENST00000520161 | ZFAND1 | chr8 | 82627038 | - | RBPMS | chr8 | 30361802 | + |
5CDS-5UTR | ENST00000220669 | ENST00000519647 | ZFAND1 | chr8 | 82627038 | - | RBPMS | chr8 | 30361802 | + |
5CDS-5UTR | ENST00000220669 | ENST00000520191 | ZFAND1 | chr8 | 82627038 | - | RBPMS | chr8 | 30361802 | + |
5CDS-intron | ENST00000220669 | ENST00000520916 | ZFAND1 | chr8 | 82627038 | - | RBPMS | chr8 | 30361802 | + |
In-frame | ENST00000522520 | ENST00000538486 | ZFAND1 | chr8 | 82627038 | - | RBPMS | chr8 | 30361802 | + |
In-frame | ENST00000522520 | ENST00000397323 | ZFAND1 | chr8 | 82627038 | - | RBPMS | chr8 | 30361802 | + |
In-frame | ENST00000522520 | ENST00000320203 | ZFAND1 | chr8 | 82627038 | - | RBPMS | chr8 | 30361802 | + |
In-frame | ENST00000522520 | ENST00000287771 | ZFAND1 | chr8 | 82627038 | - | RBPMS | chr8 | 30361802 | + |
In-frame | ENST00000522520 | ENST00000339877 | ZFAND1 | chr8 | 82627038 | - | RBPMS | chr8 | 30361802 | + |
In-frame | ENST00000522520 | ENST00000517860 | ZFAND1 | chr8 | 82627038 | - | RBPMS | chr8 | 30361802 | + |
5CDS-5UTR | ENST00000522520 | ENST00000520161 | ZFAND1 | chr8 | 82627038 | - | RBPMS | chr8 | 30361802 | + |
5CDS-5UTR | ENST00000522520 | ENST00000519647 | ZFAND1 | chr8 | 82627038 | - | RBPMS | chr8 | 30361802 | + |
5CDS-5UTR | ENST00000522520 | ENST00000520191 | ZFAND1 | chr8 | 82627038 | - | RBPMS | chr8 | 30361802 | + |
5CDS-intron | ENST00000522520 | ENST00000520916 | ZFAND1 | chr8 | 82627038 | - | RBPMS | chr8 | 30361802 | + |
intron-3CDS | ENST00000519338 | ENST00000538486 | ZFAND1 | chr8 | 82627038 | - | RBPMS | chr8 | 30361802 | + |
intron-3CDS | ENST00000519338 | ENST00000397323 | ZFAND1 | chr8 | 82627038 | - | RBPMS | chr8 | 30361802 | + |
intron-3CDS | ENST00000519338 | ENST00000320203 | ZFAND1 | chr8 | 82627038 | - | RBPMS | chr8 | 30361802 | + |
intron-3CDS | ENST00000519338 | ENST00000287771 | ZFAND1 | chr8 | 82627038 | - | RBPMS | chr8 | 30361802 | + |
intron-3CDS | ENST00000519338 | ENST00000339877 | ZFAND1 | chr8 | 82627038 | - | RBPMS | chr8 | 30361802 | + |
intron-3CDS | ENST00000519338 | ENST00000517860 | ZFAND1 | chr8 | 82627038 | - | RBPMS | chr8 | 30361802 | + |
intron-5UTR | ENST00000519338 | ENST00000520161 | ZFAND1 | chr8 | 82627038 | - | RBPMS | chr8 | 30361802 | + |
intron-5UTR | ENST00000519338 | ENST00000519647 | ZFAND1 | chr8 | 82627038 | - | RBPMS | chr8 | 30361802 | + |
intron-5UTR | ENST00000519338 | ENST00000520191 | ZFAND1 | chr8 | 82627038 | - | RBPMS | chr8 | 30361802 | + |
intron-intron | ENST00000519338 | ENST00000520916 | ZFAND1 | chr8 | 82627038 | - | RBPMS | chr8 | 30361802 | + |
Frame-shift | ENST00000521895 | ENST00000538486 | ZFAND1 | chr8 | 82627038 | - | RBPMS | chr8 | 30361802 | + |
Frame-shift | ENST00000521895 | ENST00000397323 | ZFAND1 | chr8 | 82627038 | - | RBPMS | chr8 | 30361802 | + |
Frame-shift | ENST00000521895 | ENST00000320203 | ZFAND1 | chr8 | 82627038 | - | RBPMS | chr8 | 30361802 | + |
Frame-shift | ENST00000521895 | ENST00000287771 | ZFAND1 | chr8 | 82627038 | - | RBPMS | chr8 | 30361802 | + |
Frame-shift | ENST00000521895 | ENST00000339877 | ZFAND1 | chr8 | 82627038 | - | RBPMS | chr8 | 30361802 | + |
Frame-shift | ENST00000521895 | ENST00000517860 | ZFAND1 | chr8 | 82627038 | - | RBPMS | chr8 | 30361802 | + |
5CDS-5UTR | ENST00000521895 | ENST00000520161 | ZFAND1 | chr8 | 82627038 | - | RBPMS | chr8 | 30361802 | + |
5CDS-5UTR | ENST00000521895 | ENST00000519647 | ZFAND1 | chr8 | 82627038 | - | RBPMS | chr8 | 30361802 | + |
5CDS-5UTR | ENST00000521895 | ENST00000520191 | ZFAND1 | chr8 | 82627038 | - | RBPMS | chr8 | 30361802 | + |
5CDS-intron | ENST00000521895 | ENST00000520916 | ZFAND1 | chr8 | 82627038 | - | RBPMS | chr8 | 30361802 | + |
Frame-shift | ENST00000521287 | ENST00000538486 | ZFAND1 | chr8 | 82627038 | - | RBPMS | chr8 | 30361802 | + |
Frame-shift | ENST00000521287 | ENST00000397323 | ZFAND1 | chr8 | 82627038 | - | RBPMS | chr8 | 30361802 | + |
Frame-shift | ENST00000521287 | ENST00000320203 | ZFAND1 | chr8 | 82627038 | - | RBPMS | chr8 | 30361802 | + |
Frame-shift | ENST00000521287 | ENST00000287771 | ZFAND1 | chr8 | 82627038 | - | RBPMS | chr8 | 30361802 | + |
Frame-shift | ENST00000521287 | ENST00000339877 | ZFAND1 | chr8 | 82627038 | - | RBPMS | chr8 | 30361802 | + |
Frame-shift | ENST00000521287 | ENST00000517860 | ZFAND1 | chr8 | 82627038 | - | RBPMS | chr8 | 30361802 | + |
5CDS-5UTR | ENST00000521287 | ENST00000520161 | ZFAND1 | chr8 | 82627038 | - | RBPMS | chr8 | 30361802 | + |
5CDS-5UTR | ENST00000521287 | ENST00000519647 | ZFAND1 | chr8 | 82627038 | - | RBPMS | chr8 | 30361802 | + |
5CDS-5UTR | ENST00000521287 | ENST00000520191 | ZFAND1 | chr8 | 82627038 | - | RBPMS | chr8 | 30361802 | + |
5CDS-intron | ENST00000521287 | ENST00000520916 | ZFAND1 | chr8 | 82627038 | - | RBPMS | chr8 | 30361802 | + |
In-frame | ENST00000517588 | ENST00000538486 | ZFAND1 | chr8 | 82627038 | - | RBPMS | chr8 | 30361802 | + |
In-frame | ENST00000517588 | ENST00000397323 | ZFAND1 | chr8 | 82627038 | - | RBPMS | chr8 | 30361802 | + |
In-frame | ENST00000517588 | ENST00000320203 | ZFAND1 | chr8 | 82627038 | - | RBPMS | chr8 | 30361802 | + |
In-frame | ENST00000517588 | ENST00000287771 | ZFAND1 | chr8 | 82627038 | - | RBPMS | chr8 | 30361802 | + |
In-frame | ENST00000517588 | ENST00000339877 | ZFAND1 | chr8 | 82627038 | - | RBPMS | chr8 | 30361802 | + |
In-frame | ENST00000517588 | ENST00000517860 | ZFAND1 | chr8 | 82627038 | - | RBPMS | chr8 | 30361802 | + |
5CDS-5UTR | ENST00000517588 | ENST00000520161 | ZFAND1 | chr8 | 82627038 | - | RBPMS | chr8 | 30361802 | + |
5CDS-5UTR | ENST00000517588 | ENST00000519647 | ZFAND1 | chr8 | 82627038 | - | RBPMS | chr8 | 30361802 | + |
5CDS-5UTR | ENST00000517588 | ENST00000520191 | ZFAND1 | chr8 | 82627038 | - | RBPMS | chr8 | 30361802 | + |
5CDS-intron | ENST00000517588 | ENST00000520916 | ZFAND1 | chr8 | 82627038 | - | RBPMS | chr8 | 30361802 | + |
Frame-shift | ENST00000519523 | ENST00000538486 | ZFAND1 | chr8 | 82627038 | - | RBPMS | chr8 | 30361802 | + |
Frame-shift | ENST00000519523 | ENST00000397323 | ZFAND1 | chr8 | 82627038 | - | RBPMS | chr8 | 30361802 | + |
Frame-shift | ENST00000519523 | ENST00000320203 | ZFAND1 | chr8 | 82627038 | - | RBPMS | chr8 | 30361802 | + |
Frame-shift | ENST00000519523 | ENST00000287771 | ZFAND1 | chr8 | 82627038 | - | RBPMS | chr8 | 30361802 | + |
Frame-shift | ENST00000519523 | ENST00000339877 | ZFAND1 | chr8 | 82627038 | - | RBPMS | chr8 | 30361802 | + |
Frame-shift | ENST00000519523 | ENST00000517860 | ZFAND1 | chr8 | 82627038 | - | RBPMS | chr8 | 30361802 | + |
5CDS-5UTR | ENST00000519523 | ENST00000520161 | ZFAND1 | chr8 | 82627038 | - | RBPMS | chr8 | 30361802 | + |
5CDS-5UTR | ENST00000519523 | ENST00000519647 | ZFAND1 | chr8 | 82627038 | - | RBPMS | chr8 | 30361802 | + |
5CDS-5UTR | ENST00000519523 | ENST00000520191 | ZFAND1 | chr8 | 82627038 | - | RBPMS | chr8 | 30361802 | + |
5CDS-intron | ENST00000519523 | ENST00000520916 | ZFAND1 | chr8 | 82627038 | - | RBPMS | chr8 | 30361802 | + |
ORFfinder result based on the fusion transcript sequence of in-frame fusion genes. |
Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | Seq length (transcript) | BP loci (transcript) | Predicted start (transcript) | Predicted stop (transcript) | Seq length (amino acids) |
ENST00000522520 | ZFAND1 | chr8 | 82627038 | - | ENST00000538486 | RBPMS | chr8 | 30361802 | + | 2234 | 326 | 1751 | 1401 | 116 |
ENST00000522520 | ZFAND1 | chr8 | 82627038 | - | ENST00000397323 | RBPMS | chr8 | 30361802 | + | 2407 | 326 | 254 | 670 | 138 |
ENST00000522520 | ZFAND1 | chr8 | 82627038 | - | ENST00000320203 | RBPMS | chr8 | 30361802 | + | 2608 | 326 | 254 | 670 | 138 |
ENST00000522520 | ZFAND1 | chr8 | 82627038 | - | ENST00000287771 | RBPMS | chr8 | 30361802 | + | 2488 | 326 | 254 | 694 | 146 |
ENST00000522520 | ZFAND1 | chr8 | 82627038 | - | ENST00000339877 | RBPMS | chr8 | 30361802 | + | 839 | 326 | 254 | 739 | 161 |
ENST00000522520 | ZFAND1 | chr8 | 82627038 | - | ENST00000517860 | RBPMS | chr8 | 30361802 | + | 1148 | 326 | 254 | 754 | 166 |
ENST00000517588 | ZFAND1 | chr8 | 82627038 | - | ENST00000538486 | RBPMS | chr8 | 30361802 | + | 2208 | 300 | 1725 | 1375 | 116 |
ENST00000517588 | ZFAND1 | chr8 | 82627038 | - | ENST00000397323 | RBPMS | chr8 | 30361802 | + | 2381 | 300 | 228 | 644 | 138 |
ENST00000517588 | ZFAND1 | chr8 | 82627038 | - | ENST00000320203 | RBPMS | chr8 | 30361802 | + | 2582 | 300 | 228 | 644 | 138 |
ENST00000517588 | ZFAND1 | chr8 | 82627038 | - | ENST00000287771 | RBPMS | chr8 | 30361802 | + | 2462 | 300 | 228 | 668 | 146 |
ENST00000517588 | ZFAND1 | chr8 | 82627038 | - | ENST00000339877 | RBPMS | chr8 | 30361802 | + | 813 | 300 | 228 | 713 | 161 |
ENST00000517588 | ZFAND1 | chr8 | 82627038 | - | ENST00000517860 | RBPMS | chr8 | 30361802 | + | 1122 | 300 | 228 | 728 | 166 |
DeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated. |
Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | No-coding score | Coding score |
ENST00000522520 | ENST00000538486 | ZFAND1 | chr8 | 82627038 | - | RBPMS | chr8 | 30361802 | + | 0.69094276 | 0.30905727 |
ENST00000522520 | ENST00000397323 | ZFAND1 | chr8 | 82627038 | - | RBPMS | chr8 | 30361802 | + | 0.072560266 | 0.92743975 |
ENST00000522520 | ENST00000320203 | ZFAND1 | chr8 | 82627038 | - | RBPMS | chr8 | 30361802 | + | 0.12543777 | 0.87456226 |
ENST00000522520 | ENST00000287771 | ZFAND1 | chr8 | 82627038 | - | RBPMS | chr8 | 30361802 | + | 0.04789167 | 0.9521084 |
ENST00000522520 | ENST00000339877 | ZFAND1 | chr8 | 82627038 | - | RBPMS | chr8 | 30361802 | + | 0.02482547 | 0.9751745 |
ENST00000522520 | ENST00000517860 | ZFAND1 | chr8 | 82627038 | - | RBPMS | chr8 | 30361802 | + | 0.1321703 | 0.86782974 |
ENST00000517588 | ENST00000538486 | ZFAND1 | chr8 | 82627038 | - | RBPMS | chr8 | 30361802 | + | 0.8548753 | 0.1451247 |
ENST00000517588 | ENST00000397323 | ZFAND1 | chr8 | 82627038 | - | RBPMS | chr8 | 30361802 | + | 0.104818575 | 0.8951814 |
ENST00000517588 | ENST00000320203 | ZFAND1 | chr8 | 82627038 | - | RBPMS | chr8 | 30361802 | + | 0.10178171 | 0.8982183 |
ENST00000517588 | ENST00000287771 | ZFAND1 | chr8 | 82627038 | - | RBPMS | chr8 | 30361802 | + | 0.049041808 | 0.95095825 |
ENST00000517588 | ENST00000339877 | ZFAND1 | chr8 | 82627038 | - | RBPMS | chr8 | 30361802 | + | 0.02991614 | 0.97008383 |
ENST00000517588 | ENST00000517860 | ZFAND1 | chr8 | 82627038 | - | RBPMS | chr8 | 30361802 | + | 0.16967125 | 0.83032876 |
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Fusion Genomic Features for ZFAND1-RBPMS |
FusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints. |
Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | 1-p | p (fusion gene breakpoint) |
ZFAND1 | chr8 | 82627038 | - | RBPMS | chr8 | 30361802 | + | 5.18E-07 | 0.9999995 |
ZFAND1 | chr8 | 82627038 | - | RBPMS | chr8 | 30361802 | + | 5.18E-07 | 0.9999995 |
Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page. |
Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page. |
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Fusion Protein Features for ZFAND1-RBPMS |
Go to FGviewer for the breakpoints of chr8:82627038-chr8:30361802 - FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels. |
Main function of each fusion partner protein. (from UniProt) |
Hgene | Tgene |
. | . |
FUNCTION: Might normally function as a transcriptional repressor. EWS-fusion-proteins (EFPS) may play a role in the tumorigenic process. They may disturb gene expression by mimicking, or interfering with the normal function of CTD-POLII within the transcription initiation complex. They may also contribute to an aberrant activation of the fusion protein target genes. | FUNCTION: Might normally function as a transcriptional repressor. EWS-fusion-proteins (EFPS) may play a role in the tumorigenic process. They may disturb gene expression by mimicking, or interfering with the normal function of CTD-POLII within the transcription initiation complex. They may also contribute to an aberrant activation of the fusion protein target genes. |
Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | ZFAND1 | chr8:82627038 | chr8:30361802 | ENST00000220669 | - | 5 | 8 | 61_110 | 119.33333333333333 | 269.0 | Zinc finger | AN1-type 2 |
Hgene | ZFAND1 | chr8:82627038 | chr8:30361802 | ENST00000220669 | - | 5 | 8 | 7_58 | 119.33333333333333 | 269.0 | Zinc finger | AN1-type 1 |
Hgene | ZFAND1 | chr8:82627038 | chr8:30361802 | ENST00000523096 | - | 5 | 8 | 61_110 | 119.33333333333333 | 262.0 | Zinc finger | AN1-type 2 |
Hgene | ZFAND1 | chr8:82627038 | chr8:30361802 | ENST00000523096 | - | 5 | 8 | 7_58 | 119.33333333333333 | 262.0 | Zinc finger | AN1-type 1 |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | ZFAND1 | chr8:82627038 | chr8:30361802 | ENST00000220669 | - | 5 | 8 | 160_260 | 119.33333333333333 | 269.0 | Region | ubiquitin-like |
Hgene | ZFAND1 | chr8:82627038 | chr8:30361802 | ENST00000521287 | - | 4 | 7 | 160_260 | 12.333333333333334 | 162.0 | Region | ubiquitin-like |
Hgene | ZFAND1 | chr8:82627038 | chr8:30361802 | ENST00000522520 | - | 4 | 7 | 160_260 | 12.333333333333334 | 162.0 | Region | ubiquitin-like |
Hgene | ZFAND1 | chr8:82627038 | chr8:30361802 | ENST00000523096 | - | 5 | 8 | 160_260 | 119.33333333333333 | 262.0 | Region | ubiquitin-like |
Hgene | ZFAND1 | chr8:82627038 | chr8:30361802 | ENST00000521287 | - | 4 | 7 | 61_110 | 12.333333333333334 | 162.0 | Zinc finger | AN1-type 2 |
Hgene | ZFAND1 | chr8:82627038 | chr8:30361802 | ENST00000521287 | - | 4 | 7 | 7_58 | 12.333333333333334 | 162.0 | Zinc finger | AN1-type 1 |
Hgene | ZFAND1 | chr8:82627038 | chr8:30361802 | ENST00000522520 | - | 4 | 7 | 61_110 | 12.333333333333334 | 162.0 | Zinc finger | AN1-type 2 |
Hgene | ZFAND1 | chr8:82627038 | chr8:30361802 | ENST00000522520 | - | 4 | 7 | 7_58 | 12.333333333333334 | 162.0 | Zinc finger | AN1-type 1 |
Tgene | RBPMS | chr8:82627038 | chr8:30361802 | ENST00000287771 | 3 | 10 | 24_101 | 82.0 | 543.0 | Domain | RRM | |
Tgene | RBPMS | chr8:82627038 | chr8:30361802 | ENST00000320203 | 3 | 10 | 24_101 | 82.0 | 585.3333333333334 | Domain | RRM | |
Tgene | RBPMS | chr8:82627038 | chr8:30361802 | ENST00000339877 | 3 | 7 | 24_101 | 82.0 | 220.0 | Domain | RRM | |
Tgene | RBPMS | chr8:82627038 | chr8:30361802 | ENST00000397323 | 3 | 9 | 24_101 | 82.0 | 520.6666666666666 | Domain | RRM |
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Fusion Gene Sequence for ZFAND1-RBPMS |
For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones. |
>In-frame_ENST00000522520_ENST00000538486_TCGA-13-0727_ZFAND1_chr8_82627038_-_RBPMS_chr8_30361802_length(transcript)=2234nt_BP=326nt CCGGAGAGATGGCGGAGTTGGACATCGGGCAGCACTGCCAGGTGGAGCATTGCCGGCAGCGAGATTTTCTTCCATTTGTGTGTGATGATT GTTCAGGAATATTTTGGTGACTGTAATCAATGAGAGACTGAAGACAGATCAACATACATCTTACCCATGCTCTTTCAAAGACTGTGCTGA GAGAGAACTTGTGGCAGTTATATGTCCTTATTGTGAGAAGAATTTTTGCCTGAGACACCGTCATCAGTCAGATCATGAGTGTGAAAAACT GGAAATCCCAAAGCCTCGAATGGCTGCCACTCAGAAACTTGTTAAAGACATTATTGGGCATCCGCTTCGATCCTGAAATTCCGCAAACAC TACGACTAGAGTTTGCTAAGGCAAACACGAAGATGGCCAAGAACAAACTCGTAGGGACTCCAAACCCCAGTACTCCTCTGCCCAACACTG TACCTCAGTTCATTGCCAGAGAGCCATTGATGCGCTGGCTCCCTCCCTCCGAGGCTACTTCTCAGGGCTGGAAGTCCCGTCAGTTCTGCT GAATACTATGTCCCAGGTGTGTGATGGCGGCTGCAATCTGTCTTGTGGGTATTAATGCAATCTTCAGTGGTGGCTACTGTTCTCTAGCTG TTCTACAAAACTGGAGCATGCTGGCTTGAAAAACCCTTGCCCAGTTTTGATCCCTTCAAGACTTTGTCACAGCCTCTATCACACATCTGT TTTTCTCGAAGAAAAAAATATAATTAATAAAAATGTTTTACTCTTTTACACTGTATAATTGTAAGAAATAGCGTATTATTTGTGAATGCA TGGTCTGAAATTTCTGTACAGTTTGGAGATATTTTCAAACGAAACGTAAGAGAAGTCAACAATAAAACCAAGAAAAGTGAGTATTTTTAT ACCAAACATTTTAAGTATGCTGGGATGGACGATCTTACACTGGTTTGGATCACAGTTTTTGTTCTTGACTTTTGAATGCTTGTAATTAAA AATATCTATTTTTTTCCTCTGAAGTAAGTTGCATGTTTGAGGCATGTTTCCAAATATTATCAAAATATCCTGAATTGTATTGTGAATATA TAGAAATCTGTGCCTGGCCGGAGTCCAGGGTAAATTAGTAGCATGGTGTTAGATGTTAGAAACAGAACTGTTATTTGCAGTGTTAGGTCT AGGATCCCAGTTCTAGTAGGACAGCCCTGCAAGACAATCAACCAGAAGCCTCCAGGAGCTTCTACCTATGGCTTATTCACAACTGGGCAA GAAAACATCATTGGTAAGAACTGCTGAGTGTGCCCTTAGAAAGCCCTAGTAGCTCCAGCTGTGACTATATCAACTGTGTGCCAAGTGTGA CTTTGTACAGTTTTATGTTTCCACTCTCCTGTATGTGTAGCCACTCGATGCCTAACCTACCTTCCACAAGCCAGCCCCGCATCCCTGCTC CCGCAGTGTAAGTGCAGAGCCTGCCTCACTGGTAAGGGAAAACCTTGGCTTGGGAGGCCAGCCCTGGCCCTTGAAGGGGTTGGCTGTGCC CAGCCCACCTGGCTGCAGTGGGCAGCTCATGTCTGTATCTCCAAAGTGATGTTTGTTTGCAAAACACCGGCTGAACTGAGCTGGTGTTGC CAACTCTTGGCAGCACTGGGCCAAACCGACCACATACCATGAGCTCCCAAATGGCGTGTGCTCACTGTGAGACGTCCTGCCACACCCCAC AGGAGACGGAGGCAGTGGGCATTTGGAACCAATTCTATTCAGACTTCGTCAAAGCCAAAGTCAGTCTGGTGTTGTCAGTTGACACATCTC CAGAGTTCATGACAGCTCAACCTCTCCCCTTGTACAGAAGCCATTTTTGTAAAACCACACTGACCTAAATTCAGCTGCCAAACACAGTCT TTCCTATTGATCCGCTCGGCTTATGTTGAAAATTTCAATGTCATGATTACCTGGTTGGTTTGGGTTTTTGTTTTGTTATTTTCCATTAGA AATATAAAGATGTCAAGAAGCTTTTAAAGGTCAACACAAAAAACCAAGGCCAGGAGTGAGGGGCTCTTTCTTACCGTAAATAAGGGGAAA AGGCAGTTAGCTCAAGGACTTGTGACGGATCCACTTTGGTGTTCAAGGACCTGCTTATGCCCTCAGTGCCAATCGGCTCTTGGTGAGATG >In-frame_ENST00000522520_ENST00000538486_TCGA-13-0727_ZFAND1_chr8_82627038_-_RBPMS_chr8_30361802_length(amino acids)=116AA_start in transcript=1751_stop in transcript=1401 MNRIGSKCPLPPSPVGCGRTSHSEHTPFGSSWYVVGLAQCCQELATPAQFSRCFANKHHFGDTDMSCPLQPGGLGTANPFKGQGWPPKPR -------------------------------------------------------------- >In-frame_ENST00000522520_ENST00000397323_TCGA-13-0727_ZFAND1_chr8_82627038_-_RBPMS_chr8_30361802_length(transcript)=2407nt_BP=326nt CCGGAGAGATGGCGGAGTTGGACATCGGGCAGCACTGCCAGGTGGAGCATTGCCGGCAGCGAGATTTTCTTCCATTTGTGTGTGATGATT GTTCAGGAATATTTTGGTGACTGTAATCAATGAGAGACTGAAGACAGATCAACATACATCTTACCCATGCTCTTTCAAAGACTGTGCTGA GAGAGAACTTGTGGCAGTTATATGTCCTTATTGTGAGAAGAATTTTTGCCTGAGACACCGTCATCAGTCAGATCATGAGTGTGAAAAACT GGAAATCCCAAAGCCTCGAATGGCTGCCACTCAGAAACTTGTTAAAGACATTATTGGGCATCCGCTTCGATCCTGAAATTCCGCAAACAC TACGACTAGAGTTTGCTAAGGCAAACACGAAGATGGCCAAGAACAAACTCGTAGGGACTCCAAACCCCAGTACTCCTCTGCCCAACACTG TACCTCAGTTCATTGCCAGAGAGCCATATGAGCTCACAGTGCCTGCACTTTACCCCAGTAGCCCTGAAGTGTGGGCCCCGTACCCTCTGT ACCCAGCGGAGTTAGCGCCTGCTCTACCTCCTCCTGCTTTCACCTATCCCGCTTCACTGCATGCCCAGATGCGCTGGCTCCCTCCCTCCG AGGCTACTTCTCAGGGCTGGAAGTCCCGTCAGTTCTGCTGAATACTATGTCCCAGGTGTGTGATGGCGGCTGCAATCTGTCTTGTGGGTA TTAATGCAATCTTCAGTGGTGGCTACTGTTCTCTAGCTGTTCTACAAAACTGGAGCATGCTGGCTTGAAAAACCCTTGCCCAGTTTTGAT CCCTTCAAGACTTTGTCACAGCCTCTATCACACATCTGTTTTTCTCGAAGAAAAAAATATAATTAATAAAAATGTTTTACTCTTTTACAC TGTATAATTGTAAGAAATAGCGTATTATTTGTGAATGCATGGTCTGAAATTTCTGTACAGTTTGGAGATATTTTCAAACGAAACGTAAGA GAAGTCAACAATAAAACCAAGAAAAGTGAGTATTTTTATACCAAACATTTTAAGTATGCTGGGATGGACGATCTTACACTGGTTTGGATC ACAGTTTTTGTTCTTGACTTTTGAATGCTTGTAATTAAAAATATCTATTTTTTTCCTCTGAAGTAAGTTGCATGTTTGAGGCATGTTTCC AAATATTATCAAAATATCCTGAATTGTATTGTGAATATATAGAAATCTGTGCCTGGCCGGAGTCCAGGGTAAATTAGTAGCATGGTGTTA GATGTTAGAAACAGAACTGTTATTTGCAGTGTTAGGTCTAGGATCCCAGTTCTAGTAGGACAGCCCTGCAAGACAATCAACCAGAAGCCT CCAGGAGCTTCTACCTATGGCTTATTCACAACTGGGCAAGAAAACATCATTGGTAAGAACTGCTGAGTGTGCCCTTAGAAAGCCCTAGTA GCTCCAGCTGTGACTATATCAACTGTGTGCCAAGTGTGACTTTGTACAGTTTTATGTTTCCACTCTCCTGTATGTGTAGCCACTCGATGC CTAACCTACCTTCCACAAGCCAGCCCCGCATCCCTGCTCCCGCAGTGTAAGTGCAGAGCCTGCCTCACTGGTAAGGGAAAACCTTGGCTT GGGAGGCCAGCCCTGGCCCTTGAAGGGGTTGGCTGTGCCCAGCCCACCTGGCTGCAGTGGGCAGCTCATGTCTGTATCTCCAAAGTGATG TTTGTTTGCAAAACACCGGCTGAACTGAGCTGGTGTTGCCAACTCTTGGCAGCACTGGGCCAAACCGACCACATACCATGAGCTCCCAAA TGGCGTGTGCTCACTGTGAGACGTCCTGCCACACCCCACAGGAGACGGAGGCAGTGGGCATTTGGAACCAATTCTATTCAGACTTCGTCA AAGCCAAAGTCAGTCTGGTGTTGTCAGTTGACACATCTCCAGAGTTCATGACAGCTCAACCTCTCCCCTTGTACAGAAGCCATTTTTGTA AAACCACACTGACCTAAATTCAGCTGCCAAACACAGTCTTTCCTATTGATCCGCTCGGCTTATGTTGAAAATTTCAATGTCATGATTACC TGGTTGGTTTGGGTTTTTGTTTTGTTATTTTCCATTAGAAATATAAAGATGTCAAGAAGCTTTTAAAGGTCAACACAAAAAACCAAGGCC AGGAGTGAGGGGCTCTTTCTTACCGTAAATAAGGGGAAAAGGCAGTTAGCTCAAGGACTTGTGACGGATCCACTTTGGTGTTCAAGGACC TGCTTATGCCCTCAGTGCCAATCGGCTCTTGGTGAGATGACTGTACTCCTAAGGAAAATAGCCACTTCTGCAGTCTATTATGCTTTTATA >In-frame_ENST00000522520_ENST00000397323_TCGA-13-0727_ZFAND1_chr8_82627038_-_RBPMS_chr8_30361802_length(amino acids)=138AA_start in transcript=254_stop in transcript=670 MSVKNWKSQSLEWLPLRNLLKTLLGIRFDPEIPQTLRLEFAKANTKMAKNKLVGTPNPSTPLPNTVPQFIAREPYELTVPALYPSSPEVW -------------------------------------------------------------- >In-frame_ENST00000522520_ENST00000320203_TCGA-13-0727_ZFAND1_chr8_82627038_-_RBPMS_chr8_30361802_length(transcript)=2608nt_BP=326nt CCGGAGAGATGGCGGAGTTGGACATCGGGCAGCACTGCCAGGTGGAGCATTGCCGGCAGCGAGATTTTCTTCCATTTGTGTGTGATGATT GTTCAGGAATATTTTGGTGACTGTAATCAATGAGAGACTGAAGACAGATCAACATACATCTTACCCATGCTCTTTCAAAGACTGTGCTGA GAGAGAACTTGTGGCAGTTATATGTCCTTATTGTGAGAAGAATTTTTGCCTGAGACACCGTCATCAGTCAGATCATGAGTGTGAAAAACT GGAAATCCCAAAGCCTCGAATGGCTGCCACTCAGAAACTTGTTAAAGACATTATTGGGCATCCGCTTCGATCCTGAAATTCCGCAAACAC TACGACTAGAGTTTGCTAAGGCAAACACGAAGATGGCCAAGAACAAACTCGTAGGGACTCCAAACCCCAGTACTCCTCTGCCCAACACTG TACCTCAGTTCATTGCCAGAGAGCCATATGAGCTCACAGTGCCTGCACTTTACCCCAGTAGCCCTGAAGTGTGGGCCCCGTACCCTCTGT ACCCAGCGGAGTTAGCGCCTGCTCTACCTCCTCCTGCTTTCACCTATCCCGCTTCACTGCATGCCCAGATGCGCTGGCTCCCTCCCTCCG AGGCTACTTCTCAGGGCTGGAAGTCCCGTCAGTTCTGCTGAATACTATACCCTTCAGCAATGGCTACTAGAAGGACGAACAATTGCCCTC CTTTGGAAGTACGGCTAATAGAAGCCCTAGATCCGAATAAGATCCGAATAAGAATATGTAATGGACCAGGCGCAGTGCCTCACGCCTGTC ATCCCAGCACTTTGGGAGGCTGAGGCAGGCGGATCACTTGATGCCAGAAGTTTGAGACCAGCCCAGCCAACATGGTCCCAGGTGTGTGAT GGCGGCTGCAATCTGTCTTGTGGGTATTAATGCAATCTTCAGTGGTGGCTACTGTTCTCTAGCTGTTCTACAAAACTGGAGCATGCTGGC TTGAAAAACCCTTGCCCAGTTTTGATCCCTTCAAGACTTTGTCACAGCCTCTATCACACATCTGTTTTTCTCGAAGAAAAAAATATAATT AATAAAAATGTTTTACTCTTTTACACTGTATAATTGTAAGAAATAGCGTATTATTTGTGAATGCATGGTCTGAAATTTCTGTACAGTTTG GAGATATTTTCAAACGAAACGTAAGAGAAGTCAACAATAAAACCAAGAAAAGTGAGTATTTTTATACCAAACATTTTAAGTATGCTGGGA TGGACGATCTTACACTGGTTTGGATCACAGTTTTTGTTCTTGACTTTTGAATGCTTGTAATTAAAAATATCTATTTTTTTCCTCTGAAGT AAGTTGCATGTTTGAGGCATGTTTCCAAATATTATCAAAATATCCTGAATTGTATTGTGAATATATAGAAATCTGTGCCTGGCCGGAGTC CAGGGTAAATTAGTAGCATGGTGTTAGATGTTAGAAACAGAACTGTTATTTGCAGTGTTAGGTCTAGGATCCCAGTTCTAGTAGGACAGC CCTGCAAGACAATCAACCAGAAGCCTCCAGGAGCTTCTACCTATGGCTTATTCACAACTGGGCAAGAAAACATCATTGGTAAGAACTGCT GAGTGTGCCCTTAGAAAGCCCTAGTAGCTCCAGCTGTGACTATATCAACTGTGTGCCAAGTGTGACTTTGTACAGTTTTATGTTTCCACT CTCCTGTATGTGTAGCCACTCGATGCCTAACCTACCTTCCACAAGCCAGCCCCGCATCCCTGCTCCCGCAGTGTAAGTGCAGAGCCTGCC TCACTGGTAAGGGAAAACCTTGGCTTGGGAGGCCAGCCCTGGCCCTTGAAGGGGTTGGCTGTGCCCAGCCCACCTGGCTGCAGTGGGCAG CTCATGTCTGTATCTCCAAAGTGATGTTTGTTTGCAAAACACCGGCTGAACTGAGCTGGTGTTGCCAACTCTTGGCAGCACTGGGCCAAA CCGACCACATACCATGAGCTCCCAAATGGCGTGTGCTCACTGTGAGACGTCCTGCCACACCCCACAGGAGACGGAGGCAGTGGGCATTTG GAACCAATTCTATTCAGACTTCGTCAAAGCCAAAGTCAGTCTGGTGTTGTCAGTTGACACATCTCCAGAGTTCATGACAGCTCAACCTCT CCCCTTGTACAGAAGCCATTTTTGTAAAACCACACTGACCTAAATTCAGCTGCCAAACACAGTCTTTCCTATTGATCCGCTCGGCTTATG TTGAAAATTTCAATGTCATGATTACCTGGTTGGTTTGGGTTTTTGTTTTGTTATTTTCCATTAGAAATATAAAGATGTCAAGAAGCTTTT AAAGGTCAACACAAAAAACCAAGGCCAGGAGTGAGGGGCTCTTTCTTACCGTAAATAAGGGGAAAAGGCAGTTAGCTCAAGGACTTGTGA CGGATCCACTTTGGTGTTCAAGGACCTGCTTATGCCCTCAGTGCCAATCGGCTCTTGGTGAGATGACTGTACTCCTAAGGAAAATAGCCA >In-frame_ENST00000522520_ENST00000320203_TCGA-13-0727_ZFAND1_chr8_82627038_-_RBPMS_chr8_30361802_length(amino acids)=138AA_start in transcript=254_stop in transcript=670 MSVKNWKSQSLEWLPLRNLLKTLLGIRFDPEIPQTLRLEFAKANTKMAKNKLVGTPNPSTPLPNTVPQFIAREPYELTVPALYPSSPEVW -------------------------------------------------------------- >In-frame_ENST00000522520_ENST00000287771_TCGA-13-0727_ZFAND1_chr8_82627038_-_RBPMS_chr8_30361802_length(transcript)=2488nt_BP=326nt CCGGAGAGATGGCGGAGTTGGACATCGGGCAGCACTGCCAGGTGGAGCATTGCCGGCAGCGAGATTTTCTTCCATTTGTGTGTGATGATT GTTCAGGAATATTTTGGTGACTGTAATCAATGAGAGACTGAAGACAGATCAACATACATCTTACCCATGCTCTTTCAAAGACTGTGCTGA GAGAGAACTTGTGGCAGTTATATGTCCTTATTGTGAGAAGAATTTTTGCCTGAGACACCGTCATCAGTCAGATCATGAGTGTGAAAAACT GGAAATCCCAAAGCCTCGAATGGCTGCCACTCAGAAACTTGTTAAAGACATTATTGGGCATCCGCTTCGATCCTGAAATTCCGCAAACAC TACGACTAGAGTTTGCTAAGGCAAACACGAAGATGGCCAAGAACAAACTCGTAGGGACTCCAAACCCCAGTACTCCTCTGCCCAACACTG TACCTCAGTTCATTGCCAGAGAGCCATATGAGCTCACAGTGCCTGCACTTTACCCCAGTAGCCCTGAAGTGTGGGCCCCGTACCCTCTGT ACCCAGCGGAGTTAGCGCCTGCTCTACCTCCTCCTGCTTTCACCTATCCCGCTTCACTGCATGCCCAGCTCTGTGAAGGTCAGACTGTGA GGAGAAGCCACCCCTTGAGCGCTCCGTCTCCTGATAGTGCCAGCCTGGCCTGGTTTCCTGTTTGATGCGCTGGCTCCCTCCCTCCGAGGC TACTTCTCAGGGCTGGAAGTCCCGTCAGTTCTGCTGAATACTATGTCCCAGGTGTGTGATGGCGGCTGCAATCTGTCTTGTGGGTATTAA TGCAATCTTCAGTGGTGGCTACTGTTCTCTAGCTGTTCTACAAAACTGGAGCATGCTGGCTTGAAAAACCCTTGCCCAGTTTTGATCCCT TCAAGACTTTGTCACAGCCTCTATCACACATCTGTTTTTCTCGAAGAAAAAAATATAATTAATAAAAATGTTTTACTCTTTTACACTGTA TAATTGTAAGAAATAGCGTATTATTTGTGAATGCATGGTCTGAAATTTCTGTACAGTTTGGAGATATTTTCAAACGAAACGTAAGAGAAG TCAACAATAAAACCAAGAAAAGTGAGTATTTTTATACCAAACATTTTAAGTATGCTGGGATGGACGATCTTACACTGGTTTGGATCACAG TTTTTGTTCTTGACTTTTGAATGCTTGTAATTAAAAATATCTATTTTTTTCCTCTGAAGTAAGTTGCATGTTTGAGGCATGTTTCCAAAT ATTATCAAAATATCCTGAATTGTATTGTGAATATATAGAAATCTGTGCCTGGCCGGAGTCCAGGGTAAATTAGTAGCATGGTGTTAGATG TTAGAAACAGAACTGTTATTTGCAGTGTTAGGTCTAGGATCCCAGTTCTAGTAGGACAGCCCTGCAAGACAATCAACCAGAAGCCTCCAG GAGCTTCTACCTATGGCTTATTCACAACTGGGCAAGAAAACATCATTGGTAAGAACTGCTGAGTGTGCCCTTAGAAAGCCCTAGTAGCTC CAGCTGTGACTATATCAACTGTGTGCCAAGTGTGACTTTGTACAGTTTTATGTTTCCACTCTCCTGTATGTGTAGCCACTCGATGCCTAA CCTACCTTCCACAAGCCAGCCCCGCATCCCTGCTCCCGCAGTGTAAGTGCAGAGCCTGCCTCACTGGTAAGGGAAAACCTTGGCTTGGGA GGCCAGCCCTGGCCCTTGAAGGGGTTGGCTGTGCCCAGCCCACCTGGCTGCAGTGGGCAGCTCATGTCTGTATCTCCAAAGTGATGTTTG TTTGCAAAACACCGGCTGAACTGAGCTGGTGTTGCCAACTCTTGGCAGCACTGGGCCAAACCGACCACATACCATGAGCTCCCAAATGGC GTGTGCTCACTGTGAGACGTCCTGCCACACCCCACAGGAGACGGAGGCAGTGGGCATTTGGAACCAATTCTATTCAGACTTCGTCAAAGC CAAAGTCAGTCTGGTGTTGTCAGTTGACACATCTCCAGAGTTCATGACAGCTCAACCTCTCCCCTTGTACAGAAGCCATTTTTGTAAAAC CACACTGACCTAAATTCAGCTGCCAAACACAGTCTTTCCTATTGATCCGCTCGGCTTATGTTGAAAATTTCAATGTCATGATTACCTGGT TGGTTTGGGTTTTTGTTTTGTTATTTTCCATTAGAAATATAAAGATGTCAAGAAGCTTTTAAAGGTCAACACAAAAAACCAAGGCCAGGA GTGAGGGGCTCTTTCTTACCGTAAATAAGGGGAAAAGGCAGTTAGCTCAAGGACTTGTGACGGATCCACTTTGGTGTTCAAGGACCTGCT TATGCCCTCAGTGCCAATCGGCTCTTGGTGAGATGACTGTACTCCTAAGGAAAATAGCCACTTCTGCAGTCTATTATGCTTTTATAACTG >In-frame_ENST00000522520_ENST00000287771_TCGA-13-0727_ZFAND1_chr8_82627038_-_RBPMS_chr8_30361802_length(amino acids)=146AA_start in transcript=254_stop in transcript=694 MSVKNWKSQSLEWLPLRNLLKTLLGIRFDPEIPQTLRLEFAKANTKMAKNKLVGTPNPSTPLPNTVPQFIAREPYELTVPALYPSSPEVW -------------------------------------------------------------- >In-frame_ENST00000522520_ENST00000339877_TCGA-13-0727_ZFAND1_chr8_82627038_-_RBPMS_chr8_30361802_length(transcript)=839nt_BP=326nt CCGGAGAGATGGCGGAGTTGGACATCGGGCAGCACTGCCAGGTGGAGCATTGCCGGCAGCGAGATTTTCTTCCATTTGTGTGTGATGATT GTTCAGGAATATTTTGGTGACTGTAATCAATGAGAGACTGAAGACAGATCAACATACATCTTACCCATGCTCTTTCAAAGACTGTGCTGA GAGAGAACTTGTGGCAGTTATATGTCCTTATTGTGAGAAGAATTTTTGCCTGAGACACCGTCATCAGTCAGATCATGAGTGTGAAAAACT GGAAATCCCAAAGCCTCGAATGGCTGCCACTCAGAAACTTGTTAAAGACATTATTGGGCATCCGCTTCGATCCTGAAATTCCGCAAACAC TACGACTAGAGTTTGCTAAGGCAAACACGAAGATGGCCAAGAACAAACTCGTAGGGACTCCAAACCCCAGTACTCCTCTGCCCAACACTG TACCTCAGTTCATTGCCAGAGAGCCATATGAGCTCACAGTGCCTGCACTTTACCCCAGTAGCCCTGAAGTGTGGGCCCCGTACCCTCTGT ACCCAGCGGAGTTAGCGCCTGCTCTACCTCCTCCTGCTTTCACCTATCCCGCTTCACTGCATGCCCAGTGTTTCTCTCCTGAGGCAAAGC CCAACACACCTGTCTTTTGTCCACTTCTCCAGCAAATTAGATTTGTCTCTGGGAATGTGTTTGTAACATACCAACCTACTGCAGACCAGC AGAGGGAGCTCCCATGTTGAATTTGTTTGTTAGCTATTTTCCCCCCTTTCACAAAAACTATTTCTTGACGACCTTTGAGAGATTTCAATA >In-frame_ENST00000522520_ENST00000339877_TCGA-13-0727_ZFAND1_chr8_82627038_-_RBPMS_chr8_30361802_length(amino acids)=161AA_start in transcript=254_stop in transcript=739 MSVKNWKSQSLEWLPLRNLLKTLLGIRFDPEIPQTLRLEFAKANTKMAKNKLVGTPNPSTPLPNTVPQFIAREPYELTVPALYPSSPEVW -------------------------------------------------------------- >In-frame_ENST00000522520_ENST00000517860_TCGA-13-0727_ZFAND1_chr8_82627038_-_RBPMS_chr8_30361802_length(transcript)=1148nt_BP=326nt CCGGAGAGATGGCGGAGTTGGACATCGGGCAGCACTGCCAGGTGGAGCATTGCCGGCAGCGAGATTTTCTTCCATTTGTGTGTGATGATT GTTCAGGAATATTTTGGTGACTGTAATCAATGAGAGACTGAAGACAGATCAACATACATCTTACCCATGCTCTTTCAAAGACTGTGCTGA GAGAGAACTTGTGGCAGTTATATGTCCTTATTGTGAGAAGAATTTTTGCCTGAGACACCGTCATCAGTCAGATCATGAGTGTGAAAAACT GGAAATCCCAAAGCCTCGAATGGCTGCCACTCAGAAACTTGTTAAAGACATTATTGGGCATCCGCTTCGATCCTGAAATTCCGCAAACAC TACGACTAGAGTTTGCTAAGGCAAACACGAAGATGGCCAAGAACAAACTCGTAGGGACTCCAAACCCCAGTACTCCTCTGCCCAACACTG TACCTCAGTTCATTGCCAGAGAGCCATATGAGCTCACAGTGCCTGCACTTTACCCCAGTAGCCCTGAAGTGTGGGCCCCGTACCCTCTGT ACCCAGCGGAGTTAGCGCCTGCTCTACCTCCTCCTGCTTTCACCTATCCCGCTTCACTGCATGCCCAGGTAATTGATACCCATCGGCCAG GACTTCACTCACTTCACCACCAGTCCTTTCAAACTTGGTTCCCGAGAGCACACCATACAACTAACACCTATCCAGCTAACAGATCCACCC TCAAGAGATTAATGATCCCCTCTAAATCAAGCTGACACTCCTTCAGGACTGACGAGGATCGTCTGACAGCAATGATATCACCCACTGCCT GATGTTTGCCCCAAATGACACCTCTCTCTTCCTTAATGATCTCACCTCATATCGCACATGAGAGACCGGGGCAGGTTTATCCACCTGGCT CCCAGCTAGCTAGAGGGCATCACCAGAGTGTATACGTGTGTGCCTTGTGTGGAAGGGCTGCAGAGGAAGGTGTGTGCTAGGAGAAGGGGA TATGTGCGTCTGTGCGTGTTTCTGTGTGTTGAGAGTTTTCCACTCTCGTGTACGGTGAGAAGAATCTCTGACCAAAGGGAAAGCTTCCAG >In-frame_ENST00000522520_ENST00000517860_TCGA-13-0727_ZFAND1_chr8_82627038_-_RBPMS_chr8_30361802_length(amino acids)=166AA_start in transcript=254_stop in transcript=754 MSVKNWKSQSLEWLPLRNLLKTLLGIRFDPEIPQTLRLEFAKANTKMAKNKLVGTPNPSTPLPNTVPQFIAREPYELTVPALYPSSPEVW -------------------------------------------------------------- >In-frame_ENST00000517588_ENST00000538486_TCGA-13-0727_ZFAND1_chr8_82627038_-_RBPMS_chr8_30361802_length(transcript)=2208nt_BP=300nt GGGCAGCACTGCCAGGTGGAGCATTGCCGGCAGCGAGATTTTCTTCCATTTGTGTGTGATGATTGTTCAGGAATATTTTGGTGACTGTAA TCAATGAGAGACTGAAGACAGATCAACATACATCTTACCCATGCTCTTTCAAAGACTGTGCTGAGAGAGAACTTGTGGCAGTTATATGTC CTTATTGTGAGAAGAATTTTTGCCTGAGACACCGTCATCAGTCAGATCATGAGTGTGAAAAACTGGAAATCCCAAAGCCTCGAATGGCTG CCACTCAGAAACTTGTTAAAGACATTATTGGGCATCCGCTTCGATCCTGAAATTCCGCAAACACTACGACTAGAGTTTGCTAAGGCAAAC ACGAAGATGGCCAAGAACAAACTCGTAGGGACTCCAAACCCCAGTACTCCTCTGCCCAACACTGTACCTCAGTTCATTGCCAGAGAGCCA TTGATGCGCTGGCTCCCTCCCTCCGAGGCTACTTCTCAGGGCTGGAAGTCCCGTCAGTTCTGCTGAATACTATGTCCCAGGTGTGTGATG GCGGCTGCAATCTGTCTTGTGGGTATTAATGCAATCTTCAGTGGTGGCTACTGTTCTCTAGCTGTTCTACAAAACTGGAGCATGCTGGCT TGAAAAACCCTTGCCCAGTTTTGATCCCTTCAAGACTTTGTCACAGCCTCTATCACACATCTGTTTTTCTCGAAGAAAAAAATATAATTA ATAAAAATGTTTTACTCTTTTACACTGTATAATTGTAAGAAATAGCGTATTATTTGTGAATGCATGGTCTGAAATTTCTGTACAGTTTGG AGATATTTTCAAACGAAACGTAAGAGAAGTCAACAATAAAACCAAGAAAAGTGAGTATTTTTATACCAAACATTTTAAGTATGCTGGGAT GGACGATCTTACACTGGTTTGGATCACAGTTTTTGTTCTTGACTTTTGAATGCTTGTAATTAAAAATATCTATTTTTTTCCTCTGAAGTA AGTTGCATGTTTGAGGCATGTTTCCAAATATTATCAAAATATCCTGAATTGTATTGTGAATATATAGAAATCTGTGCCTGGCCGGAGTCC AGGGTAAATTAGTAGCATGGTGTTAGATGTTAGAAACAGAACTGTTATTTGCAGTGTTAGGTCTAGGATCCCAGTTCTAGTAGGACAGCC CTGCAAGACAATCAACCAGAAGCCTCCAGGAGCTTCTACCTATGGCTTATTCACAACTGGGCAAGAAAACATCATTGGTAAGAACTGCTG AGTGTGCCCTTAGAAAGCCCTAGTAGCTCCAGCTGTGACTATATCAACTGTGTGCCAAGTGTGACTTTGTACAGTTTTATGTTTCCACTC TCCTGTATGTGTAGCCACTCGATGCCTAACCTACCTTCCACAAGCCAGCCCCGCATCCCTGCTCCCGCAGTGTAAGTGCAGAGCCTGCCT CACTGGTAAGGGAAAACCTTGGCTTGGGAGGCCAGCCCTGGCCCTTGAAGGGGTTGGCTGTGCCCAGCCCACCTGGCTGCAGTGGGCAGC TCATGTCTGTATCTCCAAAGTGATGTTTGTTTGCAAAACACCGGCTGAACTGAGCTGGTGTTGCCAACTCTTGGCAGCACTGGGCCAAAC CGACCACATACCATGAGCTCCCAAATGGCGTGTGCTCACTGTGAGACGTCCTGCCACACCCCACAGGAGACGGAGGCAGTGGGCATTTGG AACCAATTCTATTCAGACTTCGTCAAAGCCAAAGTCAGTCTGGTGTTGTCAGTTGACACATCTCCAGAGTTCATGACAGCTCAACCTCTC CCCTTGTACAGAAGCCATTTTTGTAAAACCACACTGACCTAAATTCAGCTGCCAAACACAGTCTTTCCTATTGATCCGCTCGGCTTATGT TGAAAATTTCAATGTCATGATTACCTGGTTGGTTTGGGTTTTTGTTTTGTTATTTTCCATTAGAAATATAAAGATGTCAAGAAGCTTTTA AAGGTCAACACAAAAAACCAAGGCCAGGAGTGAGGGGCTCTTTCTTACCGTAAATAAGGGGAAAAGGCAGTTAGCTCAAGGACTTGTGAC GGATCCACTTTGGTGTTCAAGGACCTGCTTATGCCCTCAGTGCCAATCGGCTCTTGGTGAGATGACTGTACTCCTAAGGAAAATAGCCAC >In-frame_ENST00000517588_ENST00000538486_TCGA-13-0727_ZFAND1_chr8_82627038_-_RBPMS_chr8_30361802_length(amino acids)=116AA_start in transcript=1725_stop in transcript=1375 MNRIGSKCPLPPSPVGCGRTSHSEHTPFGSSWYVVGLAQCCQELATPAQFSRCFANKHHFGDTDMSCPLQPGGLGTANPFKGQGWPPKPR -------------------------------------------------------------- >In-frame_ENST00000517588_ENST00000397323_TCGA-13-0727_ZFAND1_chr8_82627038_-_RBPMS_chr8_30361802_length(transcript)=2381nt_BP=300nt GGGCAGCACTGCCAGGTGGAGCATTGCCGGCAGCGAGATTTTCTTCCATTTGTGTGTGATGATTGTTCAGGAATATTTTGGTGACTGTAA TCAATGAGAGACTGAAGACAGATCAACATACATCTTACCCATGCTCTTTCAAAGACTGTGCTGAGAGAGAACTTGTGGCAGTTATATGTC CTTATTGTGAGAAGAATTTTTGCCTGAGACACCGTCATCAGTCAGATCATGAGTGTGAAAAACTGGAAATCCCAAAGCCTCGAATGGCTG CCACTCAGAAACTTGTTAAAGACATTATTGGGCATCCGCTTCGATCCTGAAATTCCGCAAACACTACGACTAGAGTTTGCTAAGGCAAAC ACGAAGATGGCCAAGAACAAACTCGTAGGGACTCCAAACCCCAGTACTCCTCTGCCCAACACTGTACCTCAGTTCATTGCCAGAGAGCCA TATGAGCTCACAGTGCCTGCACTTTACCCCAGTAGCCCTGAAGTGTGGGCCCCGTACCCTCTGTACCCAGCGGAGTTAGCGCCTGCTCTA CCTCCTCCTGCTTTCACCTATCCCGCTTCACTGCATGCCCAGATGCGCTGGCTCCCTCCCTCCGAGGCTACTTCTCAGGGCTGGAAGTCC CGTCAGTTCTGCTGAATACTATGTCCCAGGTGTGTGATGGCGGCTGCAATCTGTCTTGTGGGTATTAATGCAATCTTCAGTGGTGGCTAC TGTTCTCTAGCTGTTCTACAAAACTGGAGCATGCTGGCTTGAAAAACCCTTGCCCAGTTTTGATCCCTTCAAGACTTTGTCACAGCCTCT ATCACACATCTGTTTTTCTCGAAGAAAAAAATATAATTAATAAAAATGTTTTACTCTTTTACACTGTATAATTGTAAGAAATAGCGTATT ATTTGTGAATGCATGGTCTGAAATTTCTGTACAGTTTGGAGATATTTTCAAACGAAACGTAAGAGAAGTCAACAATAAAACCAAGAAAAG TGAGTATTTTTATACCAAACATTTTAAGTATGCTGGGATGGACGATCTTACACTGGTTTGGATCACAGTTTTTGTTCTTGACTTTTGAAT GCTTGTAATTAAAAATATCTATTTTTTTCCTCTGAAGTAAGTTGCATGTTTGAGGCATGTTTCCAAATATTATCAAAATATCCTGAATTG TATTGTGAATATATAGAAATCTGTGCCTGGCCGGAGTCCAGGGTAAATTAGTAGCATGGTGTTAGATGTTAGAAACAGAACTGTTATTTG CAGTGTTAGGTCTAGGATCCCAGTTCTAGTAGGACAGCCCTGCAAGACAATCAACCAGAAGCCTCCAGGAGCTTCTACCTATGGCTTATT CACAACTGGGCAAGAAAACATCATTGGTAAGAACTGCTGAGTGTGCCCTTAGAAAGCCCTAGTAGCTCCAGCTGTGACTATATCAACTGT GTGCCAAGTGTGACTTTGTACAGTTTTATGTTTCCACTCTCCTGTATGTGTAGCCACTCGATGCCTAACCTACCTTCCACAAGCCAGCCC CGCATCCCTGCTCCCGCAGTGTAAGTGCAGAGCCTGCCTCACTGGTAAGGGAAAACCTTGGCTTGGGAGGCCAGCCCTGGCCCTTGAAGG GGTTGGCTGTGCCCAGCCCACCTGGCTGCAGTGGGCAGCTCATGTCTGTATCTCCAAAGTGATGTTTGTTTGCAAAACACCGGCTGAACT GAGCTGGTGTTGCCAACTCTTGGCAGCACTGGGCCAAACCGACCACATACCATGAGCTCCCAAATGGCGTGTGCTCACTGTGAGACGTCC TGCCACACCCCACAGGAGACGGAGGCAGTGGGCATTTGGAACCAATTCTATTCAGACTTCGTCAAAGCCAAAGTCAGTCTGGTGTTGTCA GTTGACACATCTCCAGAGTTCATGACAGCTCAACCTCTCCCCTTGTACAGAAGCCATTTTTGTAAAACCACACTGACCTAAATTCAGCTG CCAAACACAGTCTTTCCTATTGATCCGCTCGGCTTATGTTGAAAATTTCAATGTCATGATTACCTGGTTGGTTTGGGTTTTTGTTTTGTT ATTTTCCATTAGAAATATAAAGATGTCAAGAAGCTTTTAAAGGTCAACACAAAAAACCAAGGCCAGGAGTGAGGGGCTCTTTCTTACCGT AAATAAGGGGAAAAGGCAGTTAGCTCAAGGACTTGTGACGGATCCACTTTGGTGTTCAAGGACCTGCTTATGCCCTCAGTGCCAATCGGC TCTTGGTGAGATGACTGTACTCCTAAGGAAAATAGCCACTTCTGCAGTCTATTATGCTTTTATAACTGTTTAAAGGTACTTTTCTATTGT >In-frame_ENST00000517588_ENST00000397323_TCGA-13-0727_ZFAND1_chr8_82627038_-_RBPMS_chr8_30361802_length(amino acids)=138AA_start in transcript=228_stop in transcript=644 MSVKNWKSQSLEWLPLRNLLKTLLGIRFDPEIPQTLRLEFAKANTKMAKNKLVGTPNPSTPLPNTVPQFIAREPYELTVPALYPSSPEVW -------------------------------------------------------------- >In-frame_ENST00000517588_ENST00000320203_TCGA-13-0727_ZFAND1_chr8_82627038_-_RBPMS_chr8_30361802_length(transcript)=2582nt_BP=300nt GGGCAGCACTGCCAGGTGGAGCATTGCCGGCAGCGAGATTTTCTTCCATTTGTGTGTGATGATTGTTCAGGAATATTTTGGTGACTGTAA TCAATGAGAGACTGAAGACAGATCAACATACATCTTACCCATGCTCTTTCAAAGACTGTGCTGAGAGAGAACTTGTGGCAGTTATATGTC CTTATTGTGAGAAGAATTTTTGCCTGAGACACCGTCATCAGTCAGATCATGAGTGTGAAAAACTGGAAATCCCAAAGCCTCGAATGGCTG CCACTCAGAAACTTGTTAAAGACATTATTGGGCATCCGCTTCGATCCTGAAATTCCGCAAACACTACGACTAGAGTTTGCTAAGGCAAAC ACGAAGATGGCCAAGAACAAACTCGTAGGGACTCCAAACCCCAGTACTCCTCTGCCCAACACTGTACCTCAGTTCATTGCCAGAGAGCCA TATGAGCTCACAGTGCCTGCACTTTACCCCAGTAGCCCTGAAGTGTGGGCCCCGTACCCTCTGTACCCAGCGGAGTTAGCGCCTGCTCTA CCTCCTCCTGCTTTCACCTATCCCGCTTCACTGCATGCCCAGATGCGCTGGCTCCCTCCCTCCGAGGCTACTTCTCAGGGCTGGAAGTCC CGTCAGTTCTGCTGAATACTATACCCTTCAGCAATGGCTACTAGAAGGACGAACAATTGCCCTCCTTTGGAAGTACGGCTAATAGAAGCC CTAGATCCGAATAAGATCCGAATAAGAATATGTAATGGACCAGGCGCAGTGCCTCACGCCTGTCATCCCAGCACTTTGGGAGGCTGAGGC AGGCGGATCACTTGATGCCAGAAGTTTGAGACCAGCCCAGCCAACATGGTCCCAGGTGTGTGATGGCGGCTGCAATCTGTCTTGTGGGTA TTAATGCAATCTTCAGTGGTGGCTACTGTTCTCTAGCTGTTCTACAAAACTGGAGCATGCTGGCTTGAAAAACCCTTGCCCAGTTTTGAT CCCTTCAAGACTTTGTCACAGCCTCTATCACACATCTGTTTTTCTCGAAGAAAAAAATATAATTAATAAAAATGTTTTACTCTTTTACAC TGTATAATTGTAAGAAATAGCGTATTATTTGTGAATGCATGGTCTGAAATTTCTGTACAGTTTGGAGATATTTTCAAACGAAACGTAAGA GAAGTCAACAATAAAACCAAGAAAAGTGAGTATTTTTATACCAAACATTTTAAGTATGCTGGGATGGACGATCTTACACTGGTTTGGATC ACAGTTTTTGTTCTTGACTTTTGAATGCTTGTAATTAAAAATATCTATTTTTTTCCTCTGAAGTAAGTTGCATGTTTGAGGCATGTTTCC AAATATTATCAAAATATCCTGAATTGTATTGTGAATATATAGAAATCTGTGCCTGGCCGGAGTCCAGGGTAAATTAGTAGCATGGTGTTA GATGTTAGAAACAGAACTGTTATTTGCAGTGTTAGGTCTAGGATCCCAGTTCTAGTAGGACAGCCCTGCAAGACAATCAACCAGAAGCCT CCAGGAGCTTCTACCTATGGCTTATTCACAACTGGGCAAGAAAACATCATTGGTAAGAACTGCTGAGTGTGCCCTTAGAAAGCCCTAGTA GCTCCAGCTGTGACTATATCAACTGTGTGCCAAGTGTGACTTTGTACAGTTTTATGTTTCCACTCTCCTGTATGTGTAGCCACTCGATGC CTAACCTACCTTCCACAAGCCAGCCCCGCATCCCTGCTCCCGCAGTGTAAGTGCAGAGCCTGCCTCACTGGTAAGGGAAAACCTTGGCTT GGGAGGCCAGCCCTGGCCCTTGAAGGGGTTGGCTGTGCCCAGCCCACCTGGCTGCAGTGGGCAGCTCATGTCTGTATCTCCAAAGTGATG TTTGTTTGCAAAACACCGGCTGAACTGAGCTGGTGTTGCCAACTCTTGGCAGCACTGGGCCAAACCGACCACATACCATGAGCTCCCAAA TGGCGTGTGCTCACTGTGAGACGTCCTGCCACACCCCACAGGAGACGGAGGCAGTGGGCATTTGGAACCAATTCTATTCAGACTTCGTCA AAGCCAAAGTCAGTCTGGTGTTGTCAGTTGACACATCTCCAGAGTTCATGACAGCTCAACCTCTCCCCTTGTACAGAAGCCATTTTTGTA AAACCACACTGACCTAAATTCAGCTGCCAAACACAGTCTTTCCTATTGATCCGCTCGGCTTATGTTGAAAATTTCAATGTCATGATTACC TGGTTGGTTTGGGTTTTTGTTTTGTTATTTTCCATTAGAAATATAAAGATGTCAAGAAGCTTTTAAAGGTCAACACAAAAAACCAAGGCC AGGAGTGAGGGGCTCTTTCTTACCGTAAATAAGGGGAAAAGGCAGTTAGCTCAAGGACTTGTGACGGATCCACTTTGGTGTTCAAGGACC TGCTTATGCCCTCAGTGCCAATCGGCTCTTGGTGAGATGACTGTACTCCTAAGGAAAATAGCCACTTCTGCAGTCTATTATGCTTTTATA >In-frame_ENST00000517588_ENST00000320203_TCGA-13-0727_ZFAND1_chr8_82627038_-_RBPMS_chr8_30361802_length(amino acids)=138AA_start in transcript=228_stop in transcript=644 MSVKNWKSQSLEWLPLRNLLKTLLGIRFDPEIPQTLRLEFAKANTKMAKNKLVGTPNPSTPLPNTVPQFIAREPYELTVPALYPSSPEVW -------------------------------------------------------------- >In-frame_ENST00000517588_ENST00000287771_TCGA-13-0727_ZFAND1_chr8_82627038_-_RBPMS_chr8_30361802_length(transcript)=2462nt_BP=300nt GGGCAGCACTGCCAGGTGGAGCATTGCCGGCAGCGAGATTTTCTTCCATTTGTGTGTGATGATTGTTCAGGAATATTTTGGTGACTGTAA TCAATGAGAGACTGAAGACAGATCAACATACATCTTACCCATGCTCTTTCAAAGACTGTGCTGAGAGAGAACTTGTGGCAGTTATATGTC CTTATTGTGAGAAGAATTTTTGCCTGAGACACCGTCATCAGTCAGATCATGAGTGTGAAAAACTGGAAATCCCAAAGCCTCGAATGGCTG CCACTCAGAAACTTGTTAAAGACATTATTGGGCATCCGCTTCGATCCTGAAATTCCGCAAACACTACGACTAGAGTTTGCTAAGGCAAAC ACGAAGATGGCCAAGAACAAACTCGTAGGGACTCCAAACCCCAGTACTCCTCTGCCCAACACTGTACCTCAGTTCATTGCCAGAGAGCCA TATGAGCTCACAGTGCCTGCACTTTACCCCAGTAGCCCTGAAGTGTGGGCCCCGTACCCTCTGTACCCAGCGGAGTTAGCGCCTGCTCTA CCTCCTCCTGCTTTCACCTATCCCGCTTCACTGCATGCCCAGCTCTGTGAAGGTCAGACTGTGAGGAGAAGCCACCCCTTGAGCGCTCCG TCTCCTGATAGTGCCAGCCTGGCCTGGTTTCCTGTTTGATGCGCTGGCTCCCTCCCTCCGAGGCTACTTCTCAGGGCTGGAAGTCCCGTC AGTTCTGCTGAATACTATGTCCCAGGTGTGTGATGGCGGCTGCAATCTGTCTTGTGGGTATTAATGCAATCTTCAGTGGTGGCTACTGTT CTCTAGCTGTTCTACAAAACTGGAGCATGCTGGCTTGAAAAACCCTTGCCCAGTTTTGATCCCTTCAAGACTTTGTCACAGCCTCTATCA CACATCTGTTTTTCTCGAAGAAAAAAATATAATTAATAAAAATGTTTTACTCTTTTACACTGTATAATTGTAAGAAATAGCGTATTATTT GTGAATGCATGGTCTGAAATTTCTGTACAGTTTGGAGATATTTTCAAACGAAACGTAAGAGAAGTCAACAATAAAACCAAGAAAAGTGAG TATTTTTATACCAAACATTTTAAGTATGCTGGGATGGACGATCTTACACTGGTTTGGATCACAGTTTTTGTTCTTGACTTTTGAATGCTT GTAATTAAAAATATCTATTTTTTTCCTCTGAAGTAAGTTGCATGTTTGAGGCATGTTTCCAAATATTATCAAAATATCCTGAATTGTATT GTGAATATATAGAAATCTGTGCCTGGCCGGAGTCCAGGGTAAATTAGTAGCATGGTGTTAGATGTTAGAAACAGAACTGTTATTTGCAGT GTTAGGTCTAGGATCCCAGTTCTAGTAGGACAGCCCTGCAAGACAATCAACCAGAAGCCTCCAGGAGCTTCTACCTATGGCTTATTCACA ACTGGGCAAGAAAACATCATTGGTAAGAACTGCTGAGTGTGCCCTTAGAAAGCCCTAGTAGCTCCAGCTGTGACTATATCAACTGTGTGC CAAGTGTGACTTTGTACAGTTTTATGTTTCCACTCTCCTGTATGTGTAGCCACTCGATGCCTAACCTACCTTCCACAAGCCAGCCCCGCA TCCCTGCTCCCGCAGTGTAAGTGCAGAGCCTGCCTCACTGGTAAGGGAAAACCTTGGCTTGGGAGGCCAGCCCTGGCCCTTGAAGGGGTT GGCTGTGCCCAGCCCACCTGGCTGCAGTGGGCAGCTCATGTCTGTATCTCCAAAGTGATGTTTGTTTGCAAAACACCGGCTGAACTGAGC TGGTGTTGCCAACTCTTGGCAGCACTGGGCCAAACCGACCACATACCATGAGCTCCCAAATGGCGTGTGCTCACTGTGAGACGTCCTGCC ACACCCCACAGGAGACGGAGGCAGTGGGCATTTGGAACCAATTCTATTCAGACTTCGTCAAAGCCAAAGTCAGTCTGGTGTTGTCAGTTG ACACATCTCCAGAGTTCATGACAGCTCAACCTCTCCCCTTGTACAGAAGCCATTTTTGTAAAACCACACTGACCTAAATTCAGCTGCCAA ACACAGTCTTTCCTATTGATCCGCTCGGCTTATGTTGAAAATTTCAATGTCATGATTACCTGGTTGGTTTGGGTTTTTGTTTTGTTATTT TCCATTAGAAATATAAAGATGTCAAGAAGCTTTTAAAGGTCAACACAAAAAACCAAGGCCAGGAGTGAGGGGCTCTTTCTTACCGTAAAT AAGGGGAAAAGGCAGTTAGCTCAAGGACTTGTGACGGATCCACTTTGGTGTTCAAGGACCTGCTTATGCCCTCAGTGCCAATCGGCTCTT GGTGAGATGACTGTACTCCTAAGGAAAATAGCCACTTCTGCAGTCTATTATGCTTTTATAACTGTTTAAAGGTACTTTTCTATTGTCATT >In-frame_ENST00000517588_ENST00000287771_TCGA-13-0727_ZFAND1_chr8_82627038_-_RBPMS_chr8_30361802_length(amino acids)=146AA_start in transcript=228_stop in transcript=668 MSVKNWKSQSLEWLPLRNLLKTLLGIRFDPEIPQTLRLEFAKANTKMAKNKLVGTPNPSTPLPNTVPQFIAREPYELTVPALYPSSPEVW -------------------------------------------------------------- >In-frame_ENST00000517588_ENST00000339877_TCGA-13-0727_ZFAND1_chr8_82627038_-_RBPMS_chr8_30361802_length(transcript)=813nt_BP=300nt GGGCAGCACTGCCAGGTGGAGCATTGCCGGCAGCGAGATTTTCTTCCATTTGTGTGTGATGATTGTTCAGGAATATTTTGGTGACTGTAA TCAATGAGAGACTGAAGACAGATCAACATACATCTTACCCATGCTCTTTCAAAGACTGTGCTGAGAGAGAACTTGTGGCAGTTATATGTC CTTATTGTGAGAAGAATTTTTGCCTGAGACACCGTCATCAGTCAGATCATGAGTGTGAAAAACTGGAAATCCCAAAGCCTCGAATGGCTG CCACTCAGAAACTTGTTAAAGACATTATTGGGCATCCGCTTCGATCCTGAAATTCCGCAAACACTACGACTAGAGTTTGCTAAGGCAAAC ACGAAGATGGCCAAGAACAAACTCGTAGGGACTCCAAACCCCAGTACTCCTCTGCCCAACACTGTACCTCAGTTCATTGCCAGAGAGCCA TATGAGCTCACAGTGCCTGCACTTTACCCCAGTAGCCCTGAAGTGTGGGCCCCGTACCCTCTGTACCCAGCGGAGTTAGCGCCTGCTCTA CCTCCTCCTGCTTTCACCTATCCCGCTTCACTGCATGCCCAGTGTTTCTCTCCTGAGGCAAAGCCCAACACACCTGTCTTTTGTCCACTT CTCCAGCAAATTAGATTTGTCTCTGGGAATGTGTTTGTAACATACCAACCTACTGCAGACCAGCAGAGGGAGCTCCCATGTTGAATTTGT TTGTTAGCTATTTTCCCCCCTTTCACAAAAACTATTTCTTGACGACCTTTGAGAGATTTCAATAAAAATTTTAATCAGAGCAAAAATGAA >In-frame_ENST00000517588_ENST00000339877_TCGA-13-0727_ZFAND1_chr8_82627038_-_RBPMS_chr8_30361802_length(amino acids)=161AA_start in transcript=228_stop in transcript=713 MSVKNWKSQSLEWLPLRNLLKTLLGIRFDPEIPQTLRLEFAKANTKMAKNKLVGTPNPSTPLPNTVPQFIAREPYELTVPALYPSSPEVW -------------------------------------------------------------- >In-frame_ENST00000517588_ENST00000517860_TCGA-13-0727_ZFAND1_chr8_82627038_-_RBPMS_chr8_30361802_length(transcript)=1122nt_BP=300nt GGGCAGCACTGCCAGGTGGAGCATTGCCGGCAGCGAGATTTTCTTCCATTTGTGTGTGATGATTGTTCAGGAATATTTTGGTGACTGTAA TCAATGAGAGACTGAAGACAGATCAACATACATCTTACCCATGCTCTTTCAAAGACTGTGCTGAGAGAGAACTTGTGGCAGTTATATGTC CTTATTGTGAGAAGAATTTTTGCCTGAGACACCGTCATCAGTCAGATCATGAGTGTGAAAAACTGGAAATCCCAAAGCCTCGAATGGCTG CCACTCAGAAACTTGTTAAAGACATTATTGGGCATCCGCTTCGATCCTGAAATTCCGCAAACACTACGACTAGAGTTTGCTAAGGCAAAC ACGAAGATGGCCAAGAACAAACTCGTAGGGACTCCAAACCCCAGTACTCCTCTGCCCAACACTGTACCTCAGTTCATTGCCAGAGAGCCA TATGAGCTCACAGTGCCTGCACTTTACCCCAGTAGCCCTGAAGTGTGGGCCCCGTACCCTCTGTACCCAGCGGAGTTAGCGCCTGCTCTA CCTCCTCCTGCTTTCACCTATCCCGCTTCACTGCATGCCCAGGTAATTGATACCCATCGGCCAGGACTTCACTCACTTCACCACCAGTCC TTTCAAACTTGGTTCCCGAGAGCACACCATACAACTAACACCTATCCAGCTAACAGATCCACCCTCAAGAGATTAATGATCCCCTCTAAA TCAAGCTGACACTCCTTCAGGACTGACGAGGATCGTCTGACAGCAATGATATCACCCACTGCCTGATGTTTGCCCCAAATGACACCTCTC TCTTCCTTAATGATCTCACCTCATATCGCACATGAGAGACCGGGGCAGGTTTATCCACCTGGCTCCCAGCTAGCTAGAGGGCATCACCAG AGTGTATACGTGTGTGCCTTGTGTGGAAGGGCTGCAGAGGAAGGTGTGTGCTAGGAGAAGGGGATATGTGCGTCTGTGCGTGTTTCTGTG TGTTGAGAGTTTTCCACTCTCGTGTACGGTGAGAAGAATCTCTGACCAAAGGGAAAGCTTCCAGGGGGGAAGGCTGTACTTTCTTAAATA >In-frame_ENST00000517588_ENST00000517860_TCGA-13-0727_ZFAND1_chr8_82627038_-_RBPMS_chr8_30361802_length(amino acids)=166AA_start in transcript=228_stop in transcript=728 MSVKNWKSQSLEWLPLRNLLKTLLGIRFDPEIPQTLRLEFAKANTKMAKNKLVGTPNPSTPLPNTVPQFIAREPYELTVPALYPSSPEVW -------------------------------------------------------------- |
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Fusion Gene PPI Analysis for ZFAND1-RBPMS |
Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in |
Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
Hgene | Hgene's interactors | Tgene | Tgene's interactors |
- Retained PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
Tgene | RBPMS | chr8:82627038 | chr8:30361802 | ENST00000287771 | 3 | 10 | 98_105 | 82.0 | 543.0 | RNA | |
Tgene | RBPMS | chr8:82627038 | chr8:30361802 | ENST00000320203 | 3 | 10 | 98_105 | 82.0 | 585.3333333333334 | RNA | |
Tgene | RBPMS | chr8:82627038 | chr8:30361802 | ENST00000339877 | 3 | 7 | 98_105 | 82.0 | 220.0 | RNA | |
Tgene | RBPMS | chr8:82627038 | chr8:30361802 | ENST00000397323 | 3 | 9 | 98_105 | 82.0 | 520.6666666666666 | RNA |
- Lost PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
- Retained PPIs, but lost function due to frame-shift fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Related Drugs for ZFAND1-RBPMS |
Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.8 2021-05-08) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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Related Diseases for ZFAND1-RBPMS |
Diseases associated with fusion partners. (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |