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Fusion Gene Summary | |
Fusion Gene ORF analysis | |
Fusion Genomic Features | |
Fusion Protein Features | |
Fusion Gene Sequence | |
Fusion Gene PPI analysis | |
Related Drugs | |
Related Diseases |
Fusion gene:CAPZB-UBR4 (FusionGDB2 ID:13063) |
Fusion Gene Summary for CAPZB-UBR4 |
Fusion gene summary |
Fusion gene information | Fusion gene name: CAPZB-UBR4 | Fusion gene ID: 13063 | Hgene | Tgene | Gene symbol | CAPZB | UBR4 | Gene ID | 832 | 23352 |
Gene name | capping actin protein of muscle Z-line subunit beta | ubiquitin protein ligase E3 component n-recognin 4 | |
Synonyms | CAPB|CAPPB|CAPZ | RBAF600|ZUBR1|p600 | |
Cytomap | 1p36.13 | 1p36.13 | |
Type of gene | protein-coding | protein-coding | |
Description | F-actin-capping protein subunit betacapZ betacapping actin protein of muscle Z-line beta subunitcapping protein (actin filament) muscle Z-line, betaepididymis secretory sperm binding protein | E3 ubiquitin-protein ligase UBR4N-recognin-4RING-type E3 ubiquitin transferase UBR4retinoblastoma-associated factor 600-like proteinretinoblastoma-associated factor of 600 kDazinc finger UBR1-type protein 1 | |
Modification date | 20200320 | 20200313 | |
UniProtAcc | . | . | |
Ensembl transtripts involved in fusion gene | ENST00000401084, ENST00000264203, ENST00000375142, ENST00000433834, ENST00000264202, ENST00000482808, ENST00000375144, | ENST00000375217, ENST00000375226, ENST00000375267, ENST00000375254, ENST00000375225, ENST00000429347, ENST00000375224, ENST00000543981, ENST00000467272, ENST00000375218, | |
Fusion gene scores | * DoF score | 20 X 22 X 11=4840 | 14 X 16 X 7=1568 |
# samples | 29 | 16 | |
** MAII score | log2(29/4840*10)=-4.06088224214702 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(16/1568*10)=-3.29278174922785 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
Context | PubMed: CAPZB [Title/Abstract] AND UBR4 [Title/Abstract] AND fusion [Title/Abstract] | ||
Most frequent breakpoint | CAPZB(19811930)-UBR4(19415471), # samples:1 | ||
Anticipated loss of major functional domain due to fusion event. |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
Partner | Gene | GO ID | GO term | PubMed ID |
Tgene | UBR4 | GO:0006511 | ubiquitin-dependent protein catabolic process | 23932781 |
Fusion gene breakpoints across CAPZB (5'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
Fusion gene breakpoints across UBR4 (3'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Source | Disease | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
ChimerDB4 | READ | TCGA-AH-6549 | CAPZB | chr1 | 19811930 | - | UBR4 | chr1 | 19415471 | - |
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Fusion Gene ORF analysis for CAPZB-UBR4 |
Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
In-frame | ENST00000401084 | ENST00000375217 | CAPZB | chr1 | 19811930 | - | UBR4 | chr1 | 19415471 | - |
In-frame | ENST00000401084 | ENST00000375226 | CAPZB | chr1 | 19811930 | - | UBR4 | chr1 | 19415471 | - |
In-frame | ENST00000401084 | ENST00000375267 | CAPZB | chr1 | 19811930 | - | UBR4 | chr1 | 19415471 | - |
In-frame | ENST00000401084 | ENST00000375254 | CAPZB | chr1 | 19811930 | - | UBR4 | chr1 | 19415471 | - |
5CDS-intron | ENST00000401084 | ENST00000375225 | CAPZB | chr1 | 19811930 | - | UBR4 | chr1 | 19415471 | - |
5CDS-intron | ENST00000401084 | ENST00000429347 | CAPZB | chr1 | 19811930 | - | UBR4 | chr1 | 19415471 | - |
5CDS-intron | ENST00000401084 | ENST00000375224 | CAPZB | chr1 | 19811930 | - | UBR4 | chr1 | 19415471 | - |
5CDS-intron | ENST00000401084 | ENST00000543981 | CAPZB | chr1 | 19811930 | - | UBR4 | chr1 | 19415471 | - |
5CDS-intron | ENST00000401084 | ENST00000467272 | CAPZB | chr1 | 19811930 | - | UBR4 | chr1 | 19415471 | - |
5CDS-intron | ENST00000401084 | ENST00000375218 | CAPZB | chr1 | 19811930 | - | UBR4 | chr1 | 19415471 | - |
5UTR-3CDS | ENST00000264203 | ENST00000375217 | CAPZB | chr1 | 19811930 | - | UBR4 | chr1 | 19415471 | - |
5UTR-3CDS | ENST00000264203 | ENST00000375226 | CAPZB | chr1 | 19811930 | - | UBR4 | chr1 | 19415471 | - |
5UTR-3CDS | ENST00000264203 | ENST00000375267 | CAPZB | chr1 | 19811930 | - | UBR4 | chr1 | 19415471 | - |
5UTR-3CDS | ENST00000264203 | ENST00000375254 | CAPZB | chr1 | 19811930 | - | UBR4 | chr1 | 19415471 | - |
5UTR-intron | ENST00000264203 | ENST00000375225 | CAPZB | chr1 | 19811930 | - | UBR4 | chr1 | 19415471 | - |
5UTR-intron | ENST00000264203 | ENST00000429347 | CAPZB | chr1 | 19811930 | - | UBR4 | chr1 | 19415471 | - |
5UTR-intron | ENST00000264203 | ENST00000375224 | CAPZB | chr1 | 19811930 | - | UBR4 | chr1 | 19415471 | - |
5UTR-intron | ENST00000264203 | ENST00000543981 | CAPZB | chr1 | 19811930 | - | UBR4 | chr1 | 19415471 | - |
5UTR-intron | ENST00000264203 | ENST00000467272 | CAPZB | chr1 | 19811930 | - | UBR4 | chr1 | 19415471 | - |
5UTR-intron | ENST00000264203 | ENST00000375218 | CAPZB | chr1 | 19811930 | - | UBR4 | chr1 | 19415471 | - |
In-frame | ENST00000375142 | ENST00000375217 | CAPZB | chr1 | 19811930 | - | UBR4 | chr1 | 19415471 | - |
In-frame | ENST00000375142 | ENST00000375226 | CAPZB | chr1 | 19811930 | - | UBR4 | chr1 | 19415471 | - |
In-frame | ENST00000375142 | ENST00000375267 | CAPZB | chr1 | 19811930 | - | UBR4 | chr1 | 19415471 | - |
In-frame | ENST00000375142 | ENST00000375254 | CAPZB | chr1 | 19811930 | - | UBR4 | chr1 | 19415471 | - |
5CDS-intron | ENST00000375142 | ENST00000375225 | CAPZB | chr1 | 19811930 | - | UBR4 | chr1 | 19415471 | - |
5CDS-intron | ENST00000375142 | ENST00000429347 | CAPZB | chr1 | 19811930 | - | UBR4 | chr1 | 19415471 | - |
5CDS-intron | ENST00000375142 | ENST00000375224 | CAPZB | chr1 | 19811930 | - | UBR4 | chr1 | 19415471 | - |
5CDS-intron | ENST00000375142 | ENST00000543981 | CAPZB | chr1 | 19811930 | - | UBR4 | chr1 | 19415471 | - |
5CDS-intron | ENST00000375142 | ENST00000467272 | CAPZB | chr1 | 19811930 | - | UBR4 | chr1 | 19415471 | - |
5CDS-intron | ENST00000375142 | ENST00000375218 | CAPZB | chr1 | 19811930 | - | UBR4 | chr1 | 19415471 | - |
intron-3CDS | ENST00000433834 | ENST00000375217 | CAPZB | chr1 | 19811930 | - | UBR4 | chr1 | 19415471 | - |
intron-3CDS | ENST00000433834 | ENST00000375226 | CAPZB | chr1 | 19811930 | - | UBR4 | chr1 | 19415471 | - |
intron-3CDS | ENST00000433834 | ENST00000375267 | CAPZB | chr1 | 19811930 | - | UBR4 | chr1 | 19415471 | - |
intron-3CDS | ENST00000433834 | ENST00000375254 | CAPZB | chr1 | 19811930 | - | UBR4 | chr1 | 19415471 | - |
intron-intron | ENST00000433834 | ENST00000375225 | CAPZB | chr1 | 19811930 | - | UBR4 | chr1 | 19415471 | - |
intron-intron | ENST00000433834 | ENST00000429347 | CAPZB | chr1 | 19811930 | - | UBR4 | chr1 | 19415471 | - |
intron-intron | ENST00000433834 | ENST00000375224 | CAPZB | chr1 | 19811930 | - | UBR4 | chr1 | 19415471 | - |
intron-intron | ENST00000433834 | ENST00000543981 | CAPZB | chr1 | 19811930 | - | UBR4 | chr1 | 19415471 | - |
intron-intron | ENST00000433834 | ENST00000467272 | CAPZB | chr1 | 19811930 | - | UBR4 | chr1 | 19415471 | - |
intron-intron | ENST00000433834 | ENST00000375218 | CAPZB | chr1 | 19811930 | - | UBR4 | chr1 | 19415471 | - |
In-frame | ENST00000264202 | ENST00000375217 | CAPZB | chr1 | 19811930 | - | UBR4 | chr1 | 19415471 | - |
In-frame | ENST00000264202 | ENST00000375226 | CAPZB | chr1 | 19811930 | - | UBR4 | chr1 | 19415471 | - |
In-frame | ENST00000264202 | ENST00000375267 | CAPZB | chr1 | 19811930 | - | UBR4 | chr1 | 19415471 | - |
In-frame | ENST00000264202 | ENST00000375254 | CAPZB | chr1 | 19811930 | - | UBR4 | chr1 | 19415471 | - |
5CDS-intron | ENST00000264202 | ENST00000375225 | CAPZB | chr1 | 19811930 | - | UBR4 | chr1 | 19415471 | - |
5CDS-intron | ENST00000264202 | ENST00000429347 | CAPZB | chr1 | 19811930 | - | UBR4 | chr1 | 19415471 | - |
5CDS-intron | ENST00000264202 | ENST00000375224 | CAPZB | chr1 | 19811930 | - | UBR4 | chr1 | 19415471 | - |
5CDS-intron | ENST00000264202 | ENST00000543981 | CAPZB | chr1 | 19811930 | - | UBR4 | chr1 | 19415471 | - |
5CDS-intron | ENST00000264202 | ENST00000467272 | CAPZB | chr1 | 19811930 | - | UBR4 | chr1 | 19415471 | - |
5CDS-intron | ENST00000264202 | ENST00000375218 | CAPZB | chr1 | 19811930 | - | UBR4 | chr1 | 19415471 | - |
5UTR-3CDS | ENST00000482808 | ENST00000375217 | CAPZB | chr1 | 19811930 | - | UBR4 | chr1 | 19415471 | - |
5UTR-3CDS | ENST00000482808 | ENST00000375226 | CAPZB | chr1 | 19811930 | - | UBR4 | chr1 | 19415471 | - |
5UTR-3CDS | ENST00000482808 | ENST00000375267 | CAPZB | chr1 | 19811930 | - | UBR4 | chr1 | 19415471 | - |
5UTR-3CDS | ENST00000482808 | ENST00000375254 | CAPZB | chr1 | 19811930 | - | UBR4 | chr1 | 19415471 | - |
5UTR-intron | ENST00000482808 | ENST00000375225 | CAPZB | chr1 | 19811930 | - | UBR4 | chr1 | 19415471 | - |
5UTR-intron | ENST00000482808 | ENST00000429347 | CAPZB | chr1 | 19811930 | - | UBR4 | chr1 | 19415471 | - |
5UTR-intron | ENST00000482808 | ENST00000375224 | CAPZB | chr1 | 19811930 | - | UBR4 | chr1 | 19415471 | - |
5UTR-intron | ENST00000482808 | ENST00000543981 | CAPZB | chr1 | 19811930 | - | UBR4 | chr1 | 19415471 | - |
5UTR-intron | ENST00000482808 | ENST00000467272 | CAPZB | chr1 | 19811930 | - | UBR4 | chr1 | 19415471 | - |
5UTR-intron | ENST00000482808 | ENST00000375218 | CAPZB | chr1 | 19811930 | - | UBR4 | chr1 | 19415471 | - |
intron-3CDS | ENST00000375144 | ENST00000375217 | CAPZB | chr1 | 19811930 | - | UBR4 | chr1 | 19415471 | - |
intron-3CDS | ENST00000375144 | ENST00000375226 | CAPZB | chr1 | 19811930 | - | UBR4 | chr1 | 19415471 | - |
intron-3CDS | ENST00000375144 | ENST00000375267 | CAPZB | chr1 | 19811930 | - | UBR4 | chr1 | 19415471 | - |
intron-3CDS | ENST00000375144 | ENST00000375254 | CAPZB | chr1 | 19811930 | - | UBR4 | chr1 | 19415471 | - |
intron-intron | ENST00000375144 | ENST00000375225 | CAPZB | chr1 | 19811930 | - | UBR4 | chr1 | 19415471 | - |
intron-intron | ENST00000375144 | ENST00000429347 | CAPZB | chr1 | 19811930 | - | UBR4 | chr1 | 19415471 | - |
intron-intron | ENST00000375144 | ENST00000375224 | CAPZB | chr1 | 19811930 | - | UBR4 | chr1 | 19415471 | - |
intron-intron | ENST00000375144 | ENST00000543981 | CAPZB | chr1 | 19811930 | - | UBR4 | chr1 | 19415471 | - |
intron-intron | ENST00000375144 | ENST00000467272 | CAPZB | chr1 | 19811930 | - | UBR4 | chr1 | 19415471 | - |
intron-intron | ENST00000375144 | ENST00000375218 | CAPZB | chr1 | 19811930 | - | UBR4 | chr1 | 19415471 | - |
ORFfinder result based on the fusion transcript sequence of in-frame fusion genes. |
Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | Seq length (transcript) | BP loci (transcript) | Predicted start (transcript) | Predicted stop (transcript) | Seq length (amino acids) |
ENST00000401084 | CAPZB | chr1 | 19811930 | - | ENST00000375217 | UBR4 | chr1 | 19415471 | - | 1804 | 137 | 134 | 1477 | 447 |
ENST00000401084 | CAPZB | chr1 | 19811930 | - | ENST00000375226 | UBR4 | chr1 | 19415471 | - | 1804 | 137 | 134 | 1477 | 447 |
ENST00000401084 | CAPZB | chr1 | 19811930 | - | ENST00000375267 | UBR4 | chr1 | 19415471 | - | 1867 | 137 | 134 | 1540 | 468 |
ENST00000401084 | CAPZB | chr1 | 19811930 | - | ENST00000375254 | UBR4 | chr1 | 19415471 | - | 1804 | 137 | 134 | 1477 | 447 |
ENST00000375142 | CAPZB | chr1 | 19811930 | - | ENST00000375217 | UBR4 | chr1 | 19415471 | - | 1717 | 50 | 47 | 1390 | 447 |
ENST00000375142 | CAPZB | chr1 | 19811930 | - | ENST00000375226 | UBR4 | chr1 | 19415471 | - | 1717 | 50 | 47 | 1390 | 447 |
ENST00000375142 | CAPZB | chr1 | 19811930 | - | ENST00000375267 | UBR4 | chr1 | 19415471 | - | 1780 | 50 | 47 | 1453 | 468 |
ENST00000375142 | CAPZB | chr1 | 19811930 | - | ENST00000375254 | UBR4 | chr1 | 19415471 | - | 1717 | 50 | 47 | 1390 | 447 |
ENST00000264202 | CAPZB | chr1 | 19811930 | - | ENST00000375217 | UBR4 | chr1 | 19415471 | - | 1719 | 52 | 49 | 1392 | 447 |
ENST00000264202 | CAPZB | chr1 | 19811930 | - | ENST00000375226 | UBR4 | chr1 | 19415471 | - | 1719 | 52 | 49 | 1392 | 447 |
ENST00000264202 | CAPZB | chr1 | 19811930 | - | ENST00000375267 | UBR4 | chr1 | 19415471 | - | 1782 | 52 | 49 | 1455 | 468 |
ENST00000264202 | CAPZB | chr1 | 19811930 | - | ENST00000375254 | UBR4 | chr1 | 19415471 | - | 1719 | 52 | 49 | 1392 | 447 |
DeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated. |
Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | No-coding score | Coding score |
ENST00000401084 | ENST00000375217 | CAPZB | chr1 | 19811930 | - | UBR4 | chr1 | 19415471 | - | 0.006444239 | 0.9935557 |
ENST00000401084 | ENST00000375226 | CAPZB | chr1 | 19811930 | - | UBR4 | chr1 | 19415471 | - | 0.006444239 | 0.9935557 |
ENST00000401084 | ENST00000375267 | CAPZB | chr1 | 19811930 | - | UBR4 | chr1 | 19415471 | - | 0.00607821 | 0.99392176 |
ENST00000401084 | ENST00000375254 | CAPZB | chr1 | 19811930 | - | UBR4 | chr1 | 19415471 | - | 0.006444239 | 0.9935557 |
ENST00000375142 | ENST00000375217 | CAPZB | chr1 | 19811930 | - | UBR4 | chr1 | 19415471 | - | 0.007856291 | 0.99214375 |
ENST00000375142 | ENST00000375226 | CAPZB | chr1 | 19811930 | - | UBR4 | chr1 | 19415471 | - | 0.007856291 | 0.99214375 |
ENST00000375142 | ENST00000375267 | CAPZB | chr1 | 19811930 | - | UBR4 | chr1 | 19415471 | - | 0.007340032 | 0.99266 |
ENST00000375142 | ENST00000375254 | CAPZB | chr1 | 19811930 | - | UBR4 | chr1 | 19415471 | - | 0.007856291 | 0.99214375 |
ENST00000264202 | ENST00000375217 | CAPZB | chr1 | 19811930 | - | UBR4 | chr1 | 19415471 | - | 0.007687225 | 0.9923127 |
ENST00000264202 | ENST00000375226 | CAPZB | chr1 | 19811930 | - | UBR4 | chr1 | 19415471 | - | 0.007687225 | 0.9923127 |
ENST00000264202 | ENST00000375267 | CAPZB | chr1 | 19811930 | - | UBR4 | chr1 | 19415471 | - | 0.007182204 | 0.99281776 |
ENST00000264202 | ENST00000375254 | CAPZB | chr1 | 19811930 | - | UBR4 | chr1 | 19415471 | - | 0.007687225 | 0.9923127 |
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Fusion Genomic Features for CAPZB-UBR4 |
FusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints. |
Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | 1-p | p (fusion gene breakpoint) |
Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page. |
Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page. |
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Fusion Protein Features for CAPZB-UBR4 |
Go to FGviewer for the breakpoints of chr1:19811930-chr1:19415471 - FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels. |
Main function of each fusion partner protein. (from UniProt) |
Hgene | Tgene |
. | . |
FUNCTION: Might normally function as a transcriptional repressor. EWS-fusion-proteins (EFPS) may play a role in the tumorigenic process. They may disturb gene expression by mimicking, or interfering with the normal function of CTD-POLII within the transcription initiation complex. They may also contribute to an aberrant activation of the fusion protein target genes. | FUNCTION: Might normally function as a transcriptional repressor. EWS-fusion-proteins (EFPS) may play a role in the tumorigenic process. They may disturb gene expression by mimicking, or interfering with the normal function of CTD-POLII within the transcription initiation complex. They may also contribute to an aberrant activation of the fusion protein target genes. |
Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Tgene | UBR4 | chr1:19811930 | chr1:19415471 | ENST00000375218 | 0 | 5 | 2728_2738 | 0 | 213.0 | Compositional bias | Note=Poly-Asp | |
Tgene | UBR4 | chr1:19811930 | chr1:19415471 | ENST00000375218 | 0 | 5 | 3339_3370 | 0 | 213.0 | Compositional bias | Note=Ser-rich | |
Tgene | UBR4 | chr1:19811930 | chr1:19415471 | ENST00000375218 | 0 | 5 | 608_631 | 0 | 213.0 | Compositional bias | Note=Pro-rich | |
Tgene | UBR4 | chr1:19811930 | chr1:19415471 | ENST00000375218 | 0 | 5 | 9_15 | 0 | 213.0 | Compositional bias | Note=Poly-Ala | |
Tgene | UBR4 | chr1:19811930 | chr1:19415471 | ENST00000375218 | 0 | 5 | 850_870 | 0 | 213.0 | Transmembrane | Helical | |
Tgene | UBR4 | chr1:19811930 | chr1:19415471 | ENST00000375218 | 0 | 5 | 993_1013 | 0 | 213.0 | Transmembrane | Helical | |
Tgene | UBR4 | chr1:19811930 | chr1:19415471 | ENST00000375218 | 0 | 5 | 1656_1729 | 0 | 213.0 | Zinc finger | UBR-type |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Tgene | UBR4 | chr1:19811930 | chr1:19415471 | ENST00000375217 | 96 | 106 | 2728_2738 | 4730.0 | 5177.0 | Compositional bias | Note=Poly-Asp | |
Tgene | UBR4 | chr1:19811930 | chr1:19415471 | ENST00000375217 | 96 | 106 | 3339_3370 | 4730.0 | 5177.0 | Compositional bias | Note=Ser-rich | |
Tgene | UBR4 | chr1:19811930 | chr1:19415471 | ENST00000375217 | 96 | 106 | 608_631 | 4730.0 | 5177.0 | Compositional bias | Note=Pro-rich | |
Tgene | UBR4 | chr1:19811930 | chr1:19415471 | ENST00000375217 | 96 | 106 | 9_15 | 4730.0 | 5177.0 | Compositional bias | Note=Poly-Ala | |
Tgene | UBR4 | chr1:19811930 | chr1:19415471 | ENST00000375226 | 96 | 106 | 2728_2738 | 4713.0 | 5160.0 | Compositional bias | Note=Poly-Asp | |
Tgene | UBR4 | chr1:19811930 | chr1:19415471 | ENST00000375226 | 96 | 106 | 3339_3370 | 4713.0 | 5160.0 | Compositional bias | Note=Ser-rich | |
Tgene | UBR4 | chr1:19811930 | chr1:19415471 | ENST00000375226 | 96 | 106 | 608_631 | 4713.0 | 5160.0 | Compositional bias | Note=Pro-rich | |
Tgene | UBR4 | chr1:19811930 | chr1:19415471 | ENST00000375226 | 96 | 106 | 9_15 | 4713.0 | 5160.0 | Compositional bias | Note=Poly-Ala | |
Tgene | UBR4 | chr1:19811930 | chr1:19415471 | ENST00000375254 | 96 | 106 | 2728_2738 | 4737.0 | 5184.0 | Compositional bias | Note=Poly-Asp | |
Tgene | UBR4 | chr1:19811930 | chr1:19415471 | ENST00000375254 | 96 | 106 | 3339_3370 | 4737.0 | 5184.0 | Compositional bias | Note=Ser-rich | |
Tgene | UBR4 | chr1:19811930 | chr1:19415471 | ENST00000375254 | 96 | 106 | 608_631 | 4737.0 | 5184.0 | Compositional bias | Note=Pro-rich | |
Tgene | UBR4 | chr1:19811930 | chr1:19415471 | ENST00000375254 | 96 | 106 | 9_15 | 4737.0 | 5184.0 | Compositional bias | Note=Poly-Ala | |
Tgene | UBR4 | chr1:19811930 | chr1:19415471 | ENST00000375267 | 96 | 107 | 2728_2738 | 4737.0 | 5205.0 | Compositional bias | Note=Poly-Asp | |
Tgene | UBR4 | chr1:19811930 | chr1:19415471 | ENST00000375267 | 96 | 107 | 3339_3370 | 4737.0 | 5205.0 | Compositional bias | Note=Ser-rich | |
Tgene | UBR4 | chr1:19811930 | chr1:19415471 | ENST00000375267 | 96 | 107 | 608_631 | 4737.0 | 5205.0 | Compositional bias | Note=Pro-rich | |
Tgene | UBR4 | chr1:19811930 | chr1:19415471 | ENST00000375267 | 96 | 107 | 9_15 | 4737.0 | 5205.0 | Compositional bias | Note=Poly-Ala | |
Tgene | UBR4 | chr1:19811930 | chr1:19415471 | ENST00000375217 | 96 | 106 | 850_870 | 4730.0 | 5177.0 | Transmembrane | Helical | |
Tgene | UBR4 | chr1:19811930 | chr1:19415471 | ENST00000375217 | 96 | 106 | 993_1013 | 4730.0 | 5177.0 | Transmembrane | Helical | |
Tgene | UBR4 | chr1:19811930 | chr1:19415471 | ENST00000375226 | 96 | 106 | 850_870 | 4713.0 | 5160.0 | Transmembrane | Helical | |
Tgene | UBR4 | chr1:19811930 | chr1:19415471 | ENST00000375226 | 96 | 106 | 993_1013 | 4713.0 | 5160.0 | Transmembrane | Helical | |
Tgene | UBR4 | chr1:19811930 | chr1:19415471 | ENST00000375254 | 96 | 106 | 850_870 | 4737.0 | 5184.0 | Transmembrane | Helical | |
Tgene | UBR4 | chr1:19811930 | chr1:19415471 | ENST00000375254 | 96 | 106 | 993_1013 | 4737.0 | 5184.0 | Transmembrane | Helical | |
Tgene | UBR4 | chr1:19811930 | chr1:19415471 | ENST00000375267 | 96 | 107 | 850_870 | 4737.0 | 5205.0 | Transmembrane | Helical | |
Tgene | UBR4 | chr1:19811930 | chr1:19415471 | ENST00000375267 | 96 | 107 | 993_1013 | 4737.0 | 5205.0 | Transmembrane | Helical | |
Tgene | UBR4 | chr1:19811930 | chr1:19415471 | ENST00000375217 | 96 | 106 | 1656_1729 | 4730.0 | 5177.0 | Zinc finger | UBR-type | |
Tgene | UBR4 | chr1:19811930 | chr1:19415471 | ENST00000375226 | 96 | 106 | 1656_1729 | 4713.0 | 5160.0 | Zinc finger | UBR-type | |
Tgene | UBR4 | chr1:19811930 | chr1:19415471 | ENST00000375254 | 96 | 106 | 1656_1729 | 4737.0 | 5184.0 | Zinc finger | UBR-type | |
Tgene | UBR4 | chr1:19811930 | chr1:19415471 | ENST00000375267 | 96 | 107 | 1656_1729 | 4737.0 | 5205.0 | Zinc finger | UBR-type |
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Fusion Gene Sequence for CAPZB-UBR4 |
For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones. |
>In-frame_ENST00000401084_ENST00000375217_TCGA-AH-6549_CAPZB_chr1_19811930_-_UBR4_chr1_19415471_length(transcript)=1804nt_BP=137nt GCCCGGCGCGGGGGGAGGGGGGTGCTGACCCGGATGTTCACTCCTGGGCACCCGGGGAAGTGGAAGCGCCGGGCCCTGCTGCGGGGGGGA GAGCCACTGACGCCGGGACCGGGACCGCCGCCGCCGCCGCCACCATGGTTCTGATTGGAACTGATTCCATCCCGAACCTGCATAAGCTGG AGCAGGTGTCCAGTGATGAGGGCATTGGGACCTTGGCAGAGAACCTGCTGGAAGCCCTGCGGGAACACCCTGACGTAAACAAGAAGATTG ACGCAGCCCGCAGGGAGACCCGGGCAGAGAAGAAGCGCATGGCCATGGCAATGAGGCAGAAGGCCCTGGGCACCCTGGGCATGACGACAA ATGAAAAGGGCCAGGTCGTGACCAAGACAGCACTCCTGAAGCAGATGGAAGAGCTGATCGAGGAGCCTGGCCTCACGTGCTGCATCTGCA GGGAGGGATACAAGTTCCAGCCCACAAAGGTCCTGGGCATTTATACCTTCACGAAGCGGGTAGCCTTGGAGGAGATGGAGAATAAGCCCC GGAAACAGCAGGGCTACAGCACCGTGTCCCACTTCAACATTGTGCACTACGACTGCCATCTGGCTGCCGTCAGGTTGGCTCGAGGCCGGG AAGAGTGGGAGAGTGCCGCCCTGCAGAATGCCAACACCAAGTGCAACGGGCTCCTTCCGGTCTGGGGACCTCATGTCCCTGAATCAGCTT TTGCCACTTGCTTGGCAAGACACAACACTTACCTCCAGGAATGTACAGGCCAGCGGGAGCCCACGTATCAGCTCAACATCCATGACATCA AACTGCTCTTCCTGCGCTTCGCCATGGAGCAGTCGTTCAGCGCAGACACTGGCGGGGGCGGCCGGGAGAGCAACATCCACCTGATCCCGT ACATCATTCACACTGTGCTTTACGTCCTGAACACAACCCGAGCAACTTCCCGAGAAGAGAAGAACCTCCAAGGCTTTCTGGAACAGCCCA AGGAGAAGTGGGTGGAGAGTGCCTTTGAAGTGGACGGGCCCTACTATTTCACAGTCTTGGCCCTTCACATCCTGCCCCCTGAGCAGTGGA GAGCCACACGTGTGGAAATCTTGCGGAGGCTGTTGGTGACCTCGCAGGCTCGGGCAGTGGCTCCAGGTGGAGCCACCAGGCTGACAGATA AGGCAGTGAAGGACTATTCCGCTTACCGTTCTTCCCTTCTCTTTTGGGCCCTCGTCGATCTCATTTACAACATGTTTAAGAAGGTGCCTA CCAGTAACACAGAGGGAGGCTGGTCCTGCTCTCTCGCTGAGTACATCCGCCACAACGACATGCCCATCTACGAAGCTGCCGACAAAGCCC TGAAAACCTTCCAGGAGGAGTTCATGCCAGTGGAGACCTTCTCAGAGTTCCTCGATGTGGCCGGTCTTTTATCAGAAATCACCGATCCAG AGAGCTTCCTGAAGGACCTGTTGAACTCAGTCCCCTGACCACCACACAGCAGCTGCGGCGGCGAAGACGAAGCTGGCTTGCCTTCCACCC TCTGTTCTCCCTCCTTGTGCATTAAGTTCCCTCCGCGGGATGCTGCATTGTTACCCCGCCCTCCCCTCTCTCATTTTTCTTGGTGTGGCT TGGGGTTTTTAGGCTTCCTGTTTTATCTCGTGTGTGTGGTGCACCAGCTATGAGGTTGTCTGTAACCCAAGCCATCAAAGGGCCTGTACA TACCTAGGAGCCATGAGTTGTCCCGGCCAGCTTCATACTTGAGTGTGCACATCTTGAGAAATAAACAAGTGACTTAACACACATTGAAAA >In-frame_ENST00000401084_ENST00000375217_TCGA-AH-6549_CAPZB_chr1_19811930_-_UBR4_chr1_19415471_length(amino acids)=447AA_start in transcript=134_stop in transcript=1477 MVLIGTDSIPNLHKLEQVSSDEGIGTLAENLLEALREHPDVNKKIDAARRETRAEKKRMAMAMRQKALGTLGMTTNEKGQVVTKTALLKQ MEELIEEPGLTCCICREGYKFQPTKVLGIYTFTKRVALEEMENKPRKQQGYSTVSHFNIVHYDCHLAAVRLARGREEWESAALQNANTKC NGLLPVWGPHVPESAFATCLARHNTYLQECTGQREPTYQLNIHDIKLLFLRFAMEQSFSADTGGGGRESNIHLIPYIIHTVLYVLNTTRA TSREEKNLQGFLEQPKEKWVESAFEVDGPYYFTVLALHILPPEQWRATRVEILRRLLVTSQARAVAPGGATRLTDKAVKDYSAYRSSLLF -------------------------------------------------------------- >In-frame_ENST00000401084_ENST00000375226_TCGA-AH-6549_CAPZB_chr1_19811930_-_UBR4_chr1_19415471_length(transcript)=1804nt_BP=137nt GCCCGGCGCGGGGGGAGGGGGGTGCTGACCCGGATGTTCACTCCTGGGCACCCGGGGAAGTGGAAGCGCCGGGCCCTGCTGCGGGGGGGA GAGCCACTGACGCCGGGACCGGGACCGCCGCCGCCGCCGCCACCATGGTTCTGATTGGAACTGATTCCATCCCGAACCTGCATAAGCTGG AGCAGGTGTCCAGTGATGAGGGCATTGGGACCTTGGCAGAGAACCTGCTGGAAGCCCTGCGGGAACACCCTGACGTAAACAAGAAGATTG ACGCAGCCCGCAGGGAGACCCGGGCAGAGAAGAAGCGCATGGCCATGGCAATGAGGCAGAAGGCCCTGGGCACCCTGGGCATGACGACAA ATGAAAAGGGCCAGGTCGTGACCAAGACAGCACTCCTGAAGCAGATGGAAGAGCTGATCGAGGAGCCTGGCCTCACGTGCTGCATCTGCA GGGAGGGATACAAGTTCCAGCCCACAAAGGTCCTGGGCATTTATACCTTCACGAAGCGGGTAGCCTTGGAGGAGATGGAGAATAAGCCCC GGAAACAGCAGGGCTACAGCACCGTGTCCCACTTCAACATTGTGCACTACGACTGCCATCTGGCTGCCGTCAGGTTGGCTCGAGGCCGGG AAGAGTGGGAGAGTGCCGCCCTGCAGAATGCCAACACCAAGTGCAACGGGCTCCTTCCGGTCTGGGGACCTCATGTCCCTGAATCAGCTT TTGCCACTTGCTTGGCAAGACACAACACTTACCTCCAGGAATGTACAGGCCAGCGGGAGCCCACGTATCAGCTCAACATCCATGACATCA AACTGCTCTTCCTGCGCTTCGCCATGGAGCAGTCGTTCAGCGCAGACACTGGCGGGGGCGGCCGGGAGAGCAACATCCACCTGATCCCGT ACATCATTCACACTGTGCTTTACGTCCTGAACACAACCCGAGCAACTTCCCGAGAAGAGAAGAACCTCCAAGGCTTTCTGGAACAGCCCA AGGAGAAGTGGGTGGAGAGTGCCTTTGAAGTGGACGGGCCCTACTATTTCACAGTCTTGGCCCTTCACATCCTGCCCCCTGAGCAGTGGA GAGCCACACGTGTGGAAATCTTGCGGAGGCTGTTGGTGACCTCGCAGGCTCGGGCAGTGGCTCCAGGTGGAGCCACCAGGCTGACAGATA AGGCAGTGAAGGACTATTCCGCTTACCGTTCTTCCCTTCTCTTTTGGGCCCTCGTCGATCTCATTTACAACATGTTTAAGAAGGTGCCTA CCAGTAACACAGAGGGAGGCTGGTCCTGCTCTCTCGCTGAGTACATCCGCCACAACGACATGCCCATCTACGAAGCTGCCGACAAAGCCC TGAAAACCTTCCAGGAGGAGTTCATGCCAGTGGAGACCTTCTCAGAGTTCCTCGATGTGGCCGGTCTTTTATCAGAAATCACCGATCCAG AGAGCTTCCTGAAGGACCTGTTGAACTCAGTCCCCTGACCACCACACAGCAGCTGCGGCGGCGAAGACGAAGCTGGCTTGCCTTCCACCC TCTGTTCTCCCTCCTTGTGCATTAAGTTCCCTCCGCGGGATGCTGCATTGTTACCCCGCCCTCCCCTCTCTCATTTTTCTTGGTGTGGCT TGGGGTTTTTAGGCTTCCTGTTTTATCTCGTGTGTGTGGTGCACCAGCTATGAGGTTGTCTGTAACCCAAGCCATCAAAGGGCCTGTACA TACCTAGGAGCCATGAGTTGTCCCGGCCAGCTTCATACTTGAGTGTGCACATCTTGAGAAATAAACAAGTGACTTAACACACATTGAAAA >In-frame_ENST00000401084_ENST00000375226_TCGA-AH-6549_CAPZB_chr1_19811930_-_UBR4_chr1_19415471_length(amino acids)=447AA_start in transcript=134_stop in transcript=1477 MVLIGTDSIPNLHKLEQVSSDEGIGTLAENLLEALREHPDVNKKIDAARRETRAEKKRMAMAMRQKALGTLGMTTNEKGQVVTKTALLKQ MEELIEEPGLTCCICREGYKFQPTKVLGIYTFTKRVALEEMENKPRKQQGYSTVSHFNIVHYDCHLAAVRLARGREEWESAALQNANTKC NGLLPVWGPHVPESAFATCLARHNTYLQECTGQREPTYQLNIHDIKLLFLRFAMEQSFSADTGGGGRESNIHLIPYIIHTVLYVLNTTRA TSREEKNLQGFLEQPKEKWVESAFEVDGPYYFTVLALHILPPEQWRATRVEILRRLLVTSQARAVAPGGATRLTDKAVKDYSAYRSSLLF -------------------------------------------------------------- >In-frame_ENST00000401084_ENST00000375267_TCGA-AH-6549_CAPZB_chr1_19811930_-_UBR4_chr1_19415471_length(transcript)=1867nt_BP=137nt GCCCGGCGCGGGGGGAGGGGGGTGCTGACCCGGATGTTCACTCCTGGGCACCCGGGGAAGTGGAAGCGCCGGGCCCTGCTGCGGGGGGGA GAGCCACTGACGCCGGGACCGGGACCGCCGCCGCCGCCGCCACCATGGTTCTGATTGGAACTGATTCCATCCCGAACCTGCATAAGCTGG AGCAGGTGTCCAGTGATGAGGGCATTGGGACCTTGGCAGAGAACCTGCTGGAAGCCCTGCGGGAACACCCTGACGTAAACAAGAAGATTG ACGCAGCCCGCAGGGAGACCCGGGCAGAGAAGAAGCGCATGGCCATGGCAATGAGGCAGAAGGCCCTGGGCACCCTGGGCATGACGACAA ATGAAAAGGGCCAGGTCGTGACCAAGACAGCACTCCTGAAGCAGATGGAAGAGCTGATCGAGGAGCCTGGCCTCACGTGCTGCATCTGCA GGGAGGGATACAAGTTCCAGCCCACAAAGGTCCTGGGCATTTATACCTTCACGAAGCGGGTAGCCTTGGAGGAGATGGAGAATAAGCCCC GGAAACAGCAGGGCTACAGCACCGTGTCCCACTTCAACATTGTGCACTACGACTGCCATCTGGCTGCCGTCAGGTTGGCTCGAGGCCGGG AAGAGTGGGAGAGTGCCGCCCTGCAGAATGCCAACACCAAGTGCAACGGGCTCCTTCCGGTCTGGGGACCTCATGTCCCTGAATCAGCTT TTGCCACTTGCTTGGCAAGACACAACACTTACCTCCAGGAATGTACAGGCCAGCGGGAGCCCACGTATCAGCTCAACATCCATGACATCA AACTGCTCTTCCTGCGCTTCGCCATGGAGCAGTCGTTCAGCGCAGACACTGGCGGGGGCGGCCGGGAGAGCAACATCCACCTGATCCCGT ACATCATTCACACTGTGCTTTACGTCCTGAACACAACCCGAGCAACTTCCCGAGAAGAGAAGAACCTCCAAGGCTTTCTGGAACAGCCCA AGGAGAAGTGGGTGGAGAGTGCCTTTGAAGTGGACGGGCCCTACTATTTCACAGTCTTGGCCCTTCACATCCTGCCCCCTGAGCAGTGGA GAGCCACACGTGTGGAAATCTTGCGGAGGCTGTTGGTGACCTCGCAGGCTCGGGCAGTGGCTCCAGGTGGAGCCACCAGGCTGACAGATA AGGCAGTGAAGGACTATTCCGCTTACCGTTCTTCCCTTCTCTTTTGGGCCCTCGTCGATCTCATTTACAACATGTTTAAGAAACAAACAA CCCCAACTGTGGGAGGGATTGACACTGGCAGCCTGGAGCCTTGTGTCTGTGAGAAGGTGCCTACCAGTAACACAGAGGGAGGCTGGTCCT GCTCTCTCGCTGAGTACATCCGCCACAACGACATGCCCATCTACGAAGCTGCCGACAAAGCCCTGAAAACCTTCCAGGAGGAGTTCATGC CAGTGGAGACCTTCTCAGAGTTCCTCGATGTGGCCGGTCTTTTATCAGAAATCACCGATCCAGAGAGCTTCCTGAAGGACCTGTTGAACT CAGTCCCCTGACCACCACACAGCAGCTGCGGCGGCGAAGACGAAGCTGGCTTGCCTTCCACCCTCTGTTCTCCCTCCTTGTGCATTAAGT TCCCTCCGCGGGATGCTGCATTGTTACCCCGCCCTCCCCTCTCTCATTTTTCTTGGTGTGGCTTGGGGTTTTTAGGCTTCCTGTTTTATC TCGTGTGTGTGGTGCACCAGCTATGAGGTTGTCTGTAACCCAAGCCATCAAAGGGCCTGTACATACCTAGGAGCCATGAGTTGTCCCGGC >In-frame_ENST00000401084_ENST00000375267_TCGA-AH-6549_CAPZB_chr1_19811930_-_UBR4_chr1_19415471_length(amino acids)=468AA_start in transcript=134_stop in transcript=1540 MVLIGTDSIPNLHKLEQVSSDEGIGTLAENLLEALREHPDVNKKIDAARRETRAEKKRMAMAMRQKALGTLGMTTNEKGQVVTKTALLKQ MEELIEEPGLTCCICREGYKFQPTKVLGIYTFTKRVALEEMENKPRKQQGYSTVSHFNIVHYDCHLAAVRLARGREEWESAALQNANTKC NGLLPVWGPHVPESAFATCLARHNTYLQECTGQREPTYQLNIHDIKLLFLRFAMEQSFSADTGGGGRESNIHLIPYIIHTVLYVLNTTRA TSREEKNLQGFLEQPKEKWVESAFEVDGPYYFTVLALHILPPEQWRATRVEILRRLLVTSQARAVAPGGATRLTDKAVKDYSAYRSSLLF WALVDLIYNMFKKQTTPTVGGIDTGSLEPCVCEKVPTSNTEGGWSCSLAEYIRHNDMPIYEAADKALKTFQEEFMPVETFSEFLDVAGLL -------------------------------------------------------------- >In-frame_ENST00000401084_ENST00000375254_TCGA-AH-6549_CAPZB_chr1_19811930_-_UBR4_chr1_19415471_length(transcript)=1804nt_BP=137nt GCCCGGCGCGGGGGGAGGGGGGTGCTGACCCGGATGTTCACTCCTGGGCACCCGGGGAAGTGGAAGCGCCGGGCCCTGCTGCGGGGGGGA GAGCCACTGACGCCGGGACCGGGACCGCCGCCGCCGCCGCCACCATGGTTCTGATTGGAACTGATTCCATCCCGAACCTGCATAAGCTGG AGCAGGTGTCCAGTGATGAGGGCATTGGGACCTTGGCAGAGAACCTGCTGGAAGCCCTGCGGGAACACCCTGACGTAAACAAGAAGATTG ACGCAGCCCGCAGGGAGACCCGGGCAGAGAAGAAGCGCATGGCCATGGCAATGAGGCAGAAGGCCCTGGGCACCCTGGGCATGACGACAA ATGAAAAGGGCCAGGTCGTGACCAAGACAGCACTCCTGAAGCAGATGGAAGAGCTGATCGAGGAGCCTGGCCTCACGTGCTGCATCTGCA GGGAGGGATACAAGTTCCAGCCCACAAAGGTCCTGGGCATTTATACCTTCACGAAGCGGGTAGCCTTGGAGGAGATGGAGAATAAGCCCC GGAAACAGCAGGGCTACAGCACCGTGTCCCACTTCAACATTGTGCACTACGACTGCCATCTGGCTGCCGTCAGGTTGGCTCGAGGCCGGG AAGAGTGGGAGAGTGCCGCCCTGCAGAATGCCAACACCAAGTGCAACGGGCTCCTTCCGGTCTGGGGACCTCATGTCCCTGAATCAGCTT TTGCCACTTGCTTGGCAAGACACAACACTTACCTCCAGGAATGTACAGGCCAGCGGGAGCCCACGTATCAGCTCAACATCCATGACATCA AACTGCTCTTCCTGCGCTTCGCCATGGAGCAGTCGTTCAGCGCAGACACTGGCGGGGGCGGCCGGGAGAGCAACATCCACCTGATCCCGT ACATCATTCACACTGTGCTTTACGTCCTGAACACAACCCGAGCAACTTCCCGAGAAGAGAAGAACCTCCAAGGCTTTCTGGAACAGCCCA AGGAGAAGTGGGTGGAGAGTGCCTTTGAAGTGGACGGGCCCTACTATTTCACAGTCTTGGCCCTTCACATCCTGCCCCCTGAGCAGTGGA GAGCCACACGTGTGGAAATCTTGCGGAGGCTGTTGGTGACCTCGCAGGCTCGGGCAGTGGCTCCAGGTGGAGCCACCAGGCTGACAGATA AGGCAGTGAAGGACTATTCCGCTTACCGTTCTTCCCTTCTCTTTTGGGCCCTCGTCGATCTCATTTACAACATGTTTAAGAAGGTGCCTA CCAGTAACACAGAGGGAGGCTGGTCCTGCTCTCTCGCTGAGTACATCCGCCACAACGACATGCCCATCTACGAAGCTGCCGACAAAGCCC TGAAAACCTTCCAGGAGGAGTTCATGCCAGTGGAGACCTTCTCAGAGTTCCTCGATGTGGCCGGTCTTTTATCAGAAATCACCGATCCAG AGAGCTTCCTGAAGGACCTGTTGAACTCAGTCCCCTGACCACCACACAGCAGCTGCGGCGGCGAAGACGAAGCTGGCTTGCCTTCCACCC TCTGTTCTCCCTCCTTGTGCATTAAGTTCCCTCCGCGGGATGCTGCATTGTTACCCCGCCCTCCCCTCTCTCATTTTTCTTGGTGTGGCT TGGGGTTTTTAGGCTTCCTGTTTTATCTCGTGTGTGTGGTGCACCAGCTATGAGGTTGTCTGTAACCCAAGCCATCAAAGGGCCTGTACA TACCTAGGAGCCATGAGTTGTCCCGGCCAGCTTCATACTTGAGTGTGCACATCTTGAGAAATAAACAAGTGACTTAACACACATTGAAAA >In-frame_ENST00000401084_ENST00000375254_TCGA-AH-6549_CAPZB_chr1_19811930_-_UBR4_chr1_19415471_length(amino acids)=447AA_start in transcript=134_stop in transcript=1477 MVLIGTDSIPNLHKLEQVSSDEGIGTLAENLLEALREHPDVNKKIDAARRETRAEKKRMAMAMRQKALGTLGMTTNEKGQVVTKTALLKQ MEELIEEPGLTCCICREGYKFQPTKVLGIYTFTKRVALEEMENKPRKQQGYSTVSHFNIVHYDCHLAAVRLARGREEWESAALQNANTKC NGLLPVWGPHVPESAFATCLARHNTYLQECTGQREPTYQLNIHDIKLLFLRFAMEQSFSADTGGGGRESNIHLIPYIIHTVLYVLNTTRA TSREEKNLQGFLEQPKEKWVESAFEVDGPYYFTVLALHILPPEQWRATRVEILRRLLVTSQARAVAPGGATRLTDKAVKDYSAYRSSLLF -------------------------------------------------------------- >In-frame_ENST00000375142_ENST00000375217_TCGA-AH-6549_CAPZB_chr1_19811930_-_UBR4_chr1_19415471_length(transcript)=1717nt_BP=50nt GGAGAGCCACTGACGCCGGGACCGGGACCGCCGCCGCCGCCGCCACCATGGTTCTGATTGGAACTGATTCCATCCCGAACCTGCATAAGC TGGAGCAGGTGTCCAGTGATGAGGGCATTGGGACCTTGGCAGAGAACCTGCTGGAAGCCCTGCGGGAACACCCTGACGTAAACAAGAAGA TTGACGCAGCCCGCAGGGAGACCCGGGCAGAGAAGAAGCGCATGGCCATGGCAATGAGGCAGAAGGCCCTGGGCACCCTGGGCATGACGA CAAATGAAAAGGGCCAGGTCGTGACCAAGACAGCACTCCTGAAGCAGATGGAAGAGCTGATCGAGGAGCCTGGCCTCACGTGCTGCATCT GCAGGGAGGGATACAAGTTCCAGCCCACAAAGGTCCTGGGCATTTATACCTTCACGAAGCGGGTAGCCTTGGAGGAGATGGAGAATAAGC CCCGGAAACAGCAGGGCTACAGCACCGTGTCCCACTTCAACATTGTGCACTACGACTGCCATCTGGCTGCCGTCAGGTTGGCTCGAGGCC GGGAAGAGTGGGAGAGTGCCGCCCTGCAGAATGCCAACACCAAGTGCAACGGGCTCCTTCCGGTCTGGGGACCTCATGTCCCTGAATCAG CTTTTGCCACTTGCTTGGCAAGACACAACACTTACCTCCAGGAATGTACAGGCCAGCGGGAGCCCACGTATCAGCTCAACATCCATGACA TCAAACTGCTCTTCCTGCGCTTCGCCATGGAGCAGTCGTTCAGCGCAGACACTGGCGGGGGCGGCCGGGAGAGCAACATCCACCTGATCC CGTACATCATTCACACTGTGCTTTACGTCCTGAACACAACCCGAGCAACTTCCCGAGAAGAGAAGAACCTCCAAGGCTTTCTGGAACAGC CCAAGGAGAAGTGGGTGGAGAGTGCCTTTGAAGTGGACGGGCCCTACTATTTCACAGTCTTGGCCCTTCACATCCTGCCCCCTGAGCAGT GGAGAGCCACACGTGTGGAAATCTTGCGGAGGCTGTTGGTGACCTCGCAGGCTCGGGCAGTGGCTCCAGGTGGAGCCACCAGGCTGACAG ATAAGGCAGTGAAGGACTATTCCGCTTACCGTTCTTCCCTTCTCTTTTGGGCCCTCGTCGATCTCATTTACAACATGTTTAAGAAGGTGC CTACCAGTAACACAGAGGGAGGCTGGTCCTGCTCTCTCGCTGAGTACATCCGCCACAACGACATGCCCATCTACGAAGCTGCCGACAAAG CCCTGAAAACCTTCCAGGAGGAGTTCATGCCAGTGGAGACCTTCTCAGAGTTCCTCGATGTGGCCGGTCTTTTATCAGAAATCACCGATC CAGAGAGCTTCCTGAAGGACCTGTTGAACTCAGTCCCCTGACCACCACACAGCAGCTGCGGCGGCGAAGACGAAGCTGGCTTGCCTTCCA CCCTCTGTTCTCCCTCCTTGTGCATTAAGTTCCCTCCGCGGGATGCTGCATTGTTACCCCGCCCTCCCCTCTCTCATTTTTCTTGGTGTG GCTTGGGGTTTTTAGGCTTCCTGTTTTATCTCGTGTGTGTGGTGCACCAGCTATGAGGTTGTCTGTAACCCAAGCCATCAAAGGGCCTGT ACATACCTAGGAGCCATGAGTTGTCCCGGCCAGCTTCATACTTGAGTGTGCACATCTTGAGAAATAAACAAGTGACTTAACACACATTGA >In-frame_ENST00000375142_ENST00000375217_TCGA-AH-6549_CAPZB_chr1_19811930_-_UBR4_chr1_19415471_length(amino acids)=447AA_start in transcript=47_stop in transcript=1390 MVLIGTDSIPNLHKLEQVSSDEGIGTLAENLLEALREHPDVNKKIDAARRETRAEKKRMAMAMRQKALGTLGMTTNEKGQVVTKTALLKQ MEELIEEPGLTCCICREGYKFQPTKVLGIYTFTKRVALEEMENKPRKQQGYSTVSHFNIVHYDCHLAAVRLARGREEWESAALQNANTKC NGLLPVWGPHVPESAFATCLARHNTYLQECTGQREPTYQLNIHDIKLLFLRFAMEQSFSADTGGGGRESNIHLIPYIIHTVLYVLNTTRA TSREEKNLQGFLEQPKEKWVESAFEVDGPYYFTVLALHILPPEQWRATRVEILRRLLVTSQARAVAPGGATRLTDKAVKDYSAYRSSLLF -------------------------------------------------------------- >In-frame_ENST00000375142_ENST00000375226_TCGA-AH-6549_CAPZB_chr1_19811930_-_UBR4_chr1_19415471_length(transcript)=1717nt_BP=50nt GGAGAGCCACTGACGCCGGGACCGGGACCGCCGCCGCCGCCGCCACCATGGTTCTGATTGGAACTGATTCCATCCCGAACCTGCATAAGC TGGAGCAGGTGTCCAGTGATGAGGGCATTGGGACCTTGGCAGAGAACCTGCTGGAAGCCCTGCGGGAACACCCTGACGTAAACAAGAAGA TTGACGCAGCCCGCAGGGAGACCCGGGCAGAGAAGAAGCGCATGGCCATGGCAATGAGGCAGAAGGCCCTGGGCACCCTGGGCATGACGA CAAATGAAAAGGGCCAGGTCGTGACCAAGACAGCACTCCTGAAGCAGATGGAAGAGCTGATCGAGGAGCCTGGCCTCACGTGCTGCATCT GCAGGGAGGGATACAAGTTCCAGCCCACAAAGGTCCTGGGCATTTATACCTTCACGAAGCGGGTAGCCTTGGAGGAGATGGAGAATAAGC CCCGGAAACAGCAGGGCTACAGCACCGTGTCCCACTTCAACATTGTGCACTACGACTGCCATCTGGCTGCCGTCAGGTTGGCTCGAGGCC GGGAAGAGTGGGAGAGTGCCGCCCTGCAGAATGCCAACACCAAGTGCAACGGGCTCCTTCCGGTCTGGGGACCTCATGTCCCTGAATCAG CTTTTGCCACTTGCTTGGCAAGACACAACACTTACCTCCAGGAATGTACAGGCCAGCGGGAGCCCACGTATCAGCTCAACATCCATGACA TCAAACTGCTCTTCCTGCGCTTCGCCATGGAGCAGTCGTTCAGCGCAGACACTGGCGGGGGCGGCCGGGAGAGCAACATCCACCTGATCC CGTACATCATTCACACTGTGCTTTACGTCCTGAACACAACCCGAGCAACTTCCCGAGAAGAGAAGAACCTCCAAGGCTTTCTGGAACAGC CCAAGGAGAAGTGGGTGGAGAGTGCCTTTGAAGTGGACGGGCCCTACTATTTCACAGTCTTGGCCCTTCACATCCTGCCCCCTGAGCAGT GGAGAGCCACACGTGTGGAAATCTTGCGGAGGCTGTTGGTGACCTCGCAGGCTCGGGCAGTGGCTCCAGGTGGAGCCACCAGGCTGACAG ATAAGGCAGTGAAGGACTATTCCGCTTACCGTTCTTCCCTTCTCTTTTGGGCCCTCGTCGATCTCATTTACAACATGTTTAAGAAGGTGC CTACCAGTAACACAGAGGGAGGCTGGTCCTGCTCTCTCGCTGAGTACATCCGCCACAACGACATGCCCATCTACGAAGCTGCCGACAAAG CCCTGAAAACCTTCCAGGAGGAGTTCATGCCAGTGGAGACCTTCTCAGAGTTCCTCGATGTGGCCGGTCTTTTATCAGAAATCACCGATC CAGAGAGCTTCCTGAAGGACCTGTTGAACTCAGTCCCCTGACCACCACACAGCAGCTGCGGCGGCGAAGACGAAGCTGGCTTGCCTTCCA CCCTCTGTTCTCCCTCCTTGTGCATTAAGTTCCCTCCGCGGGATGCTGCATTGTTACCCCGCCCTCCCCTCTCTCATTTTTCTTGGTGTG GCTTGGGGTTTTTAGGCTTCCTGTTTTATCTCGTGTGTGTGGTGCACCAGCTATGAGGTTGTCTGTAACCCAAGCCATCAAAGGGCCTGT ACATACCTAGGAGCCATGAGTTGTCCCGGCCAGCTTCATACTTGAGTGTGCACATCTTGAGAAATAAACAAGTGACTTAACACACATTGA >In-frame_ENST00000375142_ENST00000375226_TCGA-AH-6549_CAPZB_chr1_19811930_-_UBR4_chr1_19415471_length(amino acids)=447AA_start in transcript=47_stop in transcript=1390 MVLIGTDSIPNLHKLEQVSSDEGIGTLAENLLEALREHPDVNKKIDAARRETRAEKKRMAMAMRQKALGTLGMTTNEKGQVVTKTALLKQ MEELIEEPGLTCCICREGYKFQPTKVLGIYTFTKRVALEEMENKPRKQQGYSTVSHFNIVHYDCHLAAVRLARGREEWESAALQNANTKC NGLLPVWGPHVPESAFATCLARHNTYLQECTGQREPTYQLNIHDIKLLFLRFAMEQSFSADTGGGGRESNIHLIPYIIHTVLYVLNTTRA TSREEKNLQGFLEQPKEKWVESAFEVDGPYYFTVLALHILPPEQWRATRVEILRRLLVTSQARAVAPGGATRLTDKAVKDYSAYRSSLLF -------------------------------------------------------------- >In-frame_ENST00000375142_ENST00000375267_TCGA-AH-6549_CAPZB_chr1_19811930_-_UBR4_chr1_19415471_length(transcript)=1780nt_BP=50nt GGAGAGCCACTGACGCCGGGACCGGGACCGCCGCCGCCGCCGCCACCATGGTTCTGATTGGAACTGATTCCATCCCGAACCTGCATAAGC TGGAGCAGGTGTCCAGTGATGAGGGCATTGGGACCTTGGCAGAGAACCTGCTGGAAGCCCTGCGGGAACACCCTGACGTAAACAAGAAGA TTGACGCAGCCCGCAGGGAGACCCGGGCAGAGAAGAAGCGCATGGCCATGGCAATGAGGCAGAAGGCCCTGGGCACCCTGGGCATGACGA CAAATGAAAAGGGCCAGGTCGTGACCAAGACAGCACTCCTGAAGCAGATGGAAGAGCTGATCGAGGAGCCTGGCCTCACGTGCTGCATCT GCAGGGAGGGATACAAGTTCCAGCCCACAAAGGTCCTGGGCATTTATACCTTCACGAAGCGGGTAGCCTTGGAGGAGATGGAGAATAAGC CCCGGAAACAGCAGGGCTACAGCACCGTGTCCCACTTCAACATTGTGCACTACGACTGCCATCTGGCTGCCGTCAGGTTGGCTCGAGGCC GGGAAGAGTGGGAGAGTGCCGCCCTGCAGAATGCCAACACCAAGTGCAACGGGCTCCTTCCGGTCTGGGGACCTCATGTCCCTGAATCAG CTTTTGCCACTTGCTTGGCAAGACACAACACTTACCTCCAGGAATGTACAGGCCAGCGGGAGCCCACGTATCAGCTCAACATCCATGACA TCAAACTGCTCTTCCTGCGCTTCGCCATGGAGCAGTCGTTCAGCGCAGACACTGGCGGGGGCGGCCGGGAGAGCAACATCCACCTGATCC CGTACATCATTCACACTGTGCTTTACGTCCTGAACACAACCCGAGCAACTTCCCGAGAAGAGAAGAACCTCCAAGGCTTTCTGGAACAGC CCAAGGAGAAGTGGGTGGAGAGTGCCTTTGAAGTGGACGGGCCCTACTATTTCACAGTCTTGGCCCTTCACATCCTGCCCCCTGAGCAGT GGAGAGCCACACGTGTGGAAATCTTGCGGAGGCTGTTGGTGACCTCGCAGGCTCGGGCAGTGGCTCCAGGTGGAGCCACCAGGCTGACAG ATAAGGCAGTGAAGGACTATTCCGCTTACCGTTCTTCCCTTCTCTTTTGGGCCCTCGTCGATCTCATTTACAACATGTTTAAGAAACAAA CAACCCCAACTGTGGGAGGGATTGACACTGGCAGCCTGGAGCCTTGTGTCTGTGAGAAGGTGCCTACCAGTAACACAGAGGGAGGCTGGT CCTGCTCTCTCGCTGAGTACATCCGCCACAACGACATGCCCATCTACGAAGCTGCCGACAAAGCCCTGAAAACCTTCCAGGAGGAGTTCA TGCCAGTGGAGACCTTCTCAGAGTTCCTCGATGTGGCCGGTCTTTTATCAGAAATCACCGATCCAGAGAGCTTCCTGAAGGACCTGTTGA ACTCAGTCCCCTGACCACCACACAGCAGCTGCGGCGGCGAAGACGAAGCTGGCTTGCCTTCCACCCTCTGTTCTCCCTCCTTGTGCATTA AGTTCCCTCCGCGGGATGCTGCATTGTTACCCCGCCCTCCCCTCTCTCATTTTTCTTGGTGTGGCTTGGGGTTTTTAGGCTTCCTGTTTT ATCTCGTGTGTGTGGTGCACCAGCTATGAGGTTGTCTGTAACCCAAGCCATCAAAGGGCCTGTACATACCTAGGAGCCATGAGTTGTCCC >In-frame_ENST00000375142_ENST00000375267_TCGA-AH-6549_CAPZB_chr1_19811930_-_UBR4_chr1_19415471_length(amino acids)=468AA_start in transcript=47_stop in transcript=1453 MVLIGTDSIPNLHKLEQVSSDEGIGTLAENLLEALREHPDVNKKIDAARRETRAEKKRMAMAMRQKALGTLGMTTNEKGQVVTKTALLKQ MEELIEEPGLTCCICREGYKFQPTKVLGIYTFTKRVALEEMENKPRKQQGYSTVSHFNIVHYDCHLAAVRLARGREEWESAALQNANTKC NGLLPVWGPHVPESAFATCLARHNTYLQECTGQREPTYQLNIHDIKLLFLRFAMEQSFSADTGGGGRESNIHLIPYIIHTVLYVLNTTRA TSREEKNLQGFLEQPKEKWVESAFEVDGPYYFTVLALHILPPEQWRATRVEILRRLLVTSQARAVAPGGATRLTDKAVKDYSAYRSSLLF WALVDLIYNMFKKQTTPTVGGIDTGSLEPCVCEKVPTSNTEGGWSCSLAEYIRHNDMPIYEAADKALKTFQEEFMPVETFSEFLDVAGLL -------------------------------------------------------------- >In-frame_ENST00000375142_ENST00000375254_TCGA-AH-6549_CAPZB_chr1_19811930_-_UBR4_chr1_19415471_length(transcript)=1717nt_BP=50nt GGAGAGCCACTGACGCCGGGACCGGGACCGCCGCCGCCGCCGCCACCATGGTTCTGATTGGAACTGATTCCATCCCGAACCTGCATAAGC TGGAGCAGGTGTCCAGTGATGAGGGCATTGGGACCTTGGCAGAGAACCTGCTGGAAGCCCTGCGGGAACACCCTGACGTAAACAAGAAGA TTGACGCAGCCCGCAGGGAGACCCGGGCAGAGAAGAAGCGCATGGCCATGGCAATGAGGCAGAAGGCCCTGGGCACCCTGGGCATGACGA CAAATGAAAAGGGCCAGGTCGTGACCAAGACAGCACTCCTGAAGCAGATGGAAGAGCTGATCGAGGAGCCTGGCCTCACGTGCTGCATCT GCAGGGAGGGATACAAGTTCCAGCCCACAAAGGTCCTGGGCATTTATACCTTCACGAAGCGGGTAGCCTTGGAGGAGATGGAGAATAAGC CCCGGAAACAGCAGGGCTACAGCACCGTGTCCCACTTCAACATTGTGCACTACGACTGCCATCTGGCTGCCGTCAGGTTGGCTCGAGGCC GGGAAGAGTGGGAGAGTGCCGCCCTGCAGAATGCCAACACCAAGTGCAACGGGCTCCTTCCGGTCTGGGGACCTCATGTCCCTGAATCAG CTTTTGCCACTTGCTTGGCAAGACACAACACTTACCTCCAGGAATGTACAGGCCAGCGGGAGCCCACGTATCAGCTCAACATCCATGACA TCAAACTGCTCTTCCTGCGCTTCGCCATGGAGCAGTCGTTCAGCGCAGACACTGGCGGGGGCGGCCGGGAGAGCAACATCCACCTGATCC CGTACATCATTCACACTGTGCTTTACGTCCTGAACACAACCCGAGCAACTTCCCGAGAAGAGAAGAACCTCCAAGGCTTTCTGGAACAGC CCAAGGAGAAGTGGGTGGAGAGTGCCTTTGAAGTGGACGGGCCCTACTATTTCACAGTCTTGGCCCTTCACATCCTGCCCCCTGAGCAGT GGAGAGCCACACGTGTGGAAATCTTGCGGAGGCTGTTGGTGACCTCGCAGGCTCGGGCAGTGGCTCCAGGTGGAGCCACCAGGCTGACAG ATAAGGCAGTGAAGGACTATTCCGCTTACCGTTCTTCCCTTCTCTTTTGGGCCCTCGTCGATCTCATTTACAACATGTTTAAGAAGGTGC CTACCAGTAACACAGAGGGAGGCTGGTCCTGCTCTCTCGCTGAGTACATCCGCCACAACGACATGCCCATCTACGAAGCTGCCGACAAAG CCCTGAAAACCTTCCAGGAGGAGTTCATGCCAGTGGAGACCTTCTCAGAGTTCCTCGATGTGGCCGGTCTTTTATCAGAAATCACCGATC CAGAGAGCTTCCTGAAGGACCTGTTGAACTCAGTCCCCTGACCACCACACAGCAGCTGCGGCGGCGAAGACGAAGCTGGCTTGCCTTCCA CCCTCTGTTCTCCCTCCTTGTGCATTAAGTTCCCTCCGCGGGATGCTGCATTGTTACCCCGCCCTCCCCTCTCTCATTTTTCTTGGTGTG GCTTGGGGTTTTTAGGCTTCCTGTTTTATCTCGTGTGTGTGGTGCACCAGCTATGAGGTTGTCTGTAACCCAAGCCATCAAAGGGCCTGT ACATACCTAGGAGCCATGAGTTGTCCCGGCCAGCTTCATACTTGAGTGTGCACATCTTGAGAAATAAACAAGTGACTTAACACACATTGA >In-frame_ENST00000375142_ENST00000375254_TCGA-AH-6549_CAPZB_chr1_19811930_-_UBR4_chr1_19415471_length(amino acids)=447AA_start in transcript=47_stop in transcript=1390 MVLIGTDSIPNLHKLEQVSSDEGIGTLAENLLEALREHPDVNKKIDAARRETRAEKKRMAMAMRQKALGTLGMTTNEKGQVVTKTALLKQ MEELIEEPGLTCCICREGYKFQPTKVLGIYTFTKRVALEEMENKPRKQQGYSTVSHFNIVHYDCHLAAVRLARGREEWESAALQNANTKC NGLLPVWGPHVPESAFATCLARHNTYLQECTGQREPTYQLNIHDIKLLFLRFAMEQSFSADTGGGGRESNIHLIPYIIHTVLYVLNTTRA TSREEKNLQGFLEQPKEKWVESAFEVDGPYYFTVLALHILPPEQWRATRVEILRRLLVTSQARAVAPGGATRLTDKAVKDYSAYRSSLLF -------------------------------------------------------------- >In-frame_ENST00000264202_ENST00000375217_TCGA-AH-6549_CAPZB_chr1_19811930_-_UBR4_chr1_19415471_length(transcript)=1719nt_BP=52nt GGGGAGAGCCACTGACGCCGGGACCGGGACCGCCGCCGCCGCCGCCACCATGGTTCTGATTGGAACTGATTCCATCCCGAACCTGCATAA GCTGGAGCAGGTGTCCAGTGATGAGGGCATTGGGACCTTGGCAGAGAACCTGCTGGAAGCCCTGCGGGAACACCCTGACGTAAACAAGAA GATTGACGCAGCCCGCAGGGAGACCCGGGCAGAGAAGAAGCGCATGGCCATGGCAATGAGGCAGAAGGCCCTGGGCACCCTGGGCATGAC GACAAATGAAAAGGGCCAGGTCGTGACCAAGACAGCACTCCTGAAGCAGATGGAAGAGCTGATCGAGGAGCCTGGCCTCACGTGCTGCAT CTGCAGGGAGGGATACAAGTTCCAGCCCACAAAGGTCCTGGGCATTTATACCTTCACGAAGCGGGTAGCCTTGGAGGAGATGGAGAATAA GCCCCGGAAACAGCAGGGCTACAGCACCGTGTCCCACTTCAACATTGTGCACTACGACTGCCATCTGGCTGCCGTCAGGTTGGCTCGAGG CCGGGAAGAGTGGGAGAGTGCCGCCCTGCAGAATGCCAACACCAAGTGCAACGGGCTCCTTCCGGTCTGGGGACCTCATGTCCCTGAATC AGCTTTTGCCACTTGCTTGGCAAGACACAACACTTACCTCCAGGAATGTACAGGCCAGCGGGAGCCCACGTATCAGCTCAACATCCATGA CATCAAACTGCTCTTCCTGCGCTTCGCCATGGAGCAGTCGTTCAGCGCAGACACTGGCGGGGGCGGCCGGGAGAGCAACATCCACCTGAT CCCGTACATCATTCACACTGTGCTTTACGTCCTGAACACAACCCGAGCAACTTCCCGAGAAGAGAAGAACCTCCAAGGCTTTCTGGAACA GCCCAAGGAGAAGTGGGTGGAGAGTGCCTTTGAAGTGGACGGGCCCTACTATTTCACAGTCTTGGCCCTTCACATCCTGCCCCCTGAGCA GTGGAGAGCCACACGTGTGGAAATCTTGCGGAGGCTGTTGGTGACCTCGCAGGCTCGGGCAGTGGCTCCAGGTGGAGCCACCAGGCTGAC AGATAAGGCAGTGAAGGACTATTCCGCTTACCGTTCTTCCCTTCTCTTTTGGGCCCTCGTCGATCTCATTTACAACATGTTTAAGAAGGT GCCTACCAGTAACACAGAGGGAGGCTGGTCCTGCTCTCTCGCTGAGTACATCCGCCACAACGACATGCCCATCTACGAAGCTGCCGACAA AGCCCTGAAAACCTTCCAGGAGGAGTTCATGCCAGTGGAGACCTTCTCAGAGTTCCTCGATGTGGCCGGTCTTTTATCAGAAATCACCGA TCCAGAGAGCTTCCTGAAGGACCTGTTGAACTCAGTCCCCTGACCACCACACAGCAGCTGCGGCGGCGAAGACGAAGCTGGCTTGCCTTC CACCCTCTGTTCTCCCTCCTTGTGCATTAAGTTCCCTCCGCGGGATGCTGCATTGTTACCCCGCCCTCCCCTCTCTCATTTTTCTTGGTG TGGCTTGGGGTTTTTAGGCTTCCTGTTTTATCTCGTGTGTGTGGTGCACCAGCTATGAGGTTGTCTGTAACCCAAGCCATCAAAGGGCCT GTACATACCTAGGAGCCATGAGTTGTCCCGGCCAGCTTCATACTTGAGTGTGCACATCTTGAGAAATAAACAAGTGACTTAACACACATT >In-frame_ENST00000264202_ENST00000375217_TCGA-AH-6549_CAPZB_chr1_19811930_-_UBR4_chr1_19415471_length(amino acids)=447AA_start in transcript=49_stop in transcript=1392 MVLIGTDSIPNLHKLEQVSSDEGIGTLAENLLEALREHPDVNKKIDAARRETRAEKKRMAMAMRQKALGTLGMTTNEKGQVVTKTALLKQ MEELIEEPGLTCCICREGYKFQPTKVLGIYTFTKRVALEEMENKPRKQQGYSTVSHFNIVHYDCHLAAVRLARGREEWESAALQNANTKC NGLLPVWGPHVPESAFATCLARHNTYLQECTGQREPTYQLNIHDIKLLFLRFAMEQSFSADTGGGGRESNIHLIPYIIHTVLYVLNTTRA TSREEKNLQGFLEQPKEKWVESAFEVDGPYYFTVLALHILPPEQWRATRVEILRRLLVTSQARAVAPGGATRLTDKAVKDYSAYRSSLLF -------------------------------------------------------------- >In-frame_ENST00000264202_ENST00000375226_TCGA-AH-6549_CAPZB_chr1_19811930_-_UBR4_chr1_19415471_length(transcript)=1719nt_BP=52nt GGGGAGAGCCACTGACGCCGGGACCGGGACCGCCGCCGCCGCCGCCACCATGGTTCTGATTGGAACTGATTCCATCCCGAACCTGCATAA GCTGGAGCAGGTGTCCAGTGATGAGGGCATTGGGACCTTGGCAGAGAACCTGCTGGAAGCCCTGCGGGAACACCCTGACGTAAACAAGAA GATTGACGCAGCCCGCAGGGAGACCCGGGCAGAGAAGAAGCGCATGGCCATGGCAATGAGGCAGAAGGCCCTGGGCACCCTGGGCATGAC GACAAATGAAAAGGGCCAGGTCGTGACCAAGACAGCACTCCTGAAGCAGATGGAAGAGCTGATCGAGGAGCCTGGCCTCACGTGCTGCAT CTGCAGGGAGGGATACAAGTTCCAGCCCACAAAGGTCCTGGGCATTTATACCTTCACGAAGCGGGTAGCCTTGGAGGAGATGGAGAATAA GCCCCGGAAACAGCAGGGCTACAGCACCGTGTCCCACTTCAACATTGTGCACTACGACTGCCATCTGGCTGCCGTCAGGTTGGCTCGAGG CCGGGAAGAGTGGGAGAGTGCCGCCCTGCAGAATGCCAACACCAAGTGCAACGGGCTCCTTCCGGTCTGGGGACCTCATGTCCCTGAATC AGCTTTTGCCACTTGCTTGGCAAGACACAACACTTACCTCCAGGAATGTACAGGCCAGCGGGAGCCCACGTATCAGCTCAACATCCATGA CATCAAACTGCTCTTCCTGCGCTTCGCCATGGAGCAGTCGTTCAGCGCAGACACTGGCGGGGGCGGCCGGGAGAGCAACATCCACCTGAT CCCGTACATCATTCACACTGTGCTTTACGTCCTGAACACAACCCGAGCAACTTCCCGAGAAGAGAAGAACCTCCAAGGCTTTCTGGAACA GCCCAAGGAGAAGTGGGTGGAGAGTGCCTTTGAAGTGGACGGGCCCTACTATTTCACAGTCTTGGCCCTTCACATCCTGCCCCCTGAGCA GTGGAGAGCCACACGTGTGGAAATCTTGCGGAGGCTGTTGGTGACCTCGCAGGCTCGGGCAGTGGCTCCAGGTGGAGCCACCAGGCTGAC AGATAAGGCAGTGAAGGACTATTCCGCTTACCGTTCTTCCCTTCTCTTTTGGGCCCTCGTCGATCTCATTTACAACATGTTTAAGAAGGT GCCTACCAGTAACACAGAGGGAGGCTGGTCCTGCTCTCTCGCTGAGTACATCCGCCACAACGACATGCCCATCTACGAAGCTGCCGACAA AGCCCTGAAAACCTTCCAGGAGGAGTTCATGCCAGTGGAGACCTTCTCAGAGTTCCTCGATGTGGCCGGTCTTTTATCAGAAATCACCGA TCCAGAGAGCTTCCTGAAGGACCTGTTGAACTCAGTCCCCTGACCACCACACAGCAGCTGCGGCGGCGAAGACGAAGCTGGCTTGCCTTC CACCCTCTGTTCTCCCTCCTTGTGCATTAAGTTCCCTCCGCGGGATGCTGCATTGTTACCCCGCCCTCCCCTCTCTCATTTTTCTTGGTG TGGCTTGGGGTTTTTAGGCTTCCTGTTTTATCTCGTGTGTGTGGTGCACCAGCTATGAGGTTGTCTGTAACCCAAGCCATCAAAGGGCCT GTACATACCTAGGAGCCATGAGTTGTCCCGGCCAGCTTCATACTTGAGTGTGCACATCTTGAGAAATAAACAAGTGACTTAACACACATT >In-frame_ENST00000264202_ENST00000375226_TCGA-AH-6549_CAPZB_chr1_19811930_-_UBR4_chr1_19415471_length(amino acids)=447AA_start in transcript=49_stop in transcript=1392 MVLIGTDSIPNLHKLEQVSSDEGIGTLAENLLEALREHPDVNKKIDAARRETRAEKKRMAMAMRQKALGTLGMTTNEKGQVVTKTALLKQ MEELIEEPGLTCCICREGYKFQPTKVLGIYTFTKRVALEEMENKPRKQQGYSTVSHFNIVHYDCHLAAVRLARGREEWESAALQNANTKC NGLLPVWGPHVPESAFATCLARHNTYLQECTGQREPTYQLNIHDIKLLFLRFAMEQSFSADTGGGGRESNIHLIPYIIHTVLYVLNTTRA TSREEKNLQGFLEQPKEKWVESAFEVDGPYYFTVLALHILPPEQWRATRVEILRRLLVTSQARAVAPGGATRLTDKAVKDYSAYRSSLLF -------------------------------------------------------------- >In-frame_ENST00000264202_ENST00000375267_TCGA-AH-6549_CAPZB_chr1_19811930_-_UBR4_chr1_19415471_length(transcript)=1782nt_BP=52nt GGGGAGAGCCACTGACGCCGGGACCGGGACCGCCGCCGCCGCCGCCACCATGGTTCTGATTGGAACTGATTCCATCCCGAACCTGCATAA GCTGGAGCAGGTGTCCAGTGATGAGGGCATTGGGACCTTGGCAGAGAACCTGCTGGAAGCCCTGCGGGAACACCCTGACGTAAACAAGAA GATTGACGCAGCCCGCAGGGAGACCCGGGCAGAGAAGAAGCGCATGGCCATGGCAATGAGGCAGAAGGCCCTGGGCACCCTGGGCATGAC GACAAATGAAAAGGGCCAGGTCGTGACCAAGACAGCACTCCTGAAGCAGATGGAAGAGCTGATCGAGGAGCCTGGCCTCACGTGCTGCAT CTGCAGGGAGGGATACAAGTTCCAGCCCACAAAGGTCCTGGGCATTTATACCTTCACGAAGCGGGTAGCCTTGGAGGAGATGGAGAATAA GCCCCGGAAACAGCAGGGCTACAGCACCGTGTCCCACTTCAACATTGTGCACTACGACTGCCATCTGGCTGCCGTCAGGTTGGCTCGAGG CCGGGAAGAGTGGGAGAGTGCCGCCCTGCAGAATGCCAACACCAAGTGCAACGGGCTCCTTCCGGTCTGGGGACCTCATGTCCCTGAATC AGCTTTTGCCACTTGCTTGGCAAGACACAACACTTACCTCCAGGAATGTACAGGCCAGCGGGAGCCCACGTATCAGCTCAACATCCATGA CATCAAACTGCTCTTCCTGCGCTTCGCCATGGAGCAGTCGTTCAGCGCAGACACTGGCGGGGGCGGCCGGGAGAGCAACATCCACCTGAT CCCGTACATCATTCACACTGTGCTTTACGTCCTGAACACAACCCGAGCAACTTCCCGAGAAGAGAAGAACCTCCAAGGCTTTCTGGAACA GCCCAAGGAGAAGTGGGTGGAGAGTGCCTTTGAAGTGGACGGGCCCTACTATTTCACAGTCTTGGCCCTTCACATCCTGCCCCCTGAGCA GTGGAGAGCCACACGTGTGGAAATCTTGCGGAGGCTGTTGGTGACCTCGCAGGCTCGGGCAGTGGCTCCAGGTGGAGCCACCAGGCTGAC AGATAAGGCAGTGAAGGACTATTCCGCTTACCGTTCTTCCCTTCTCTTTTGGGCCCTCGTCGATCTCATTTACAACATGTTTAAGAAACA AACAACCCCAACTGTGGGAGGGATTGACACTGGCAGCCTGGAGCCTTGTGTCTGTGAGAAGGTGCCTACCAGTAACACAGAGGGAGGCTG GTCCTGCTCTCTCGCTGAGTACATCCGCCACAACGACATGCCCATCTACGAAGCTGCCGACAAAGCCCTGAAAACCTTCCAGGAGGAGTT CATGCCAGTGGAGACCTTCTCAGAGTTCCTCGATGTGGCCGGTCTTTTATCAGAAATCACCGATCCAGAGAGCTTCCTGAAGGACCTGTT GAACTCAGTCCCCTGACCACCACACAGCAGCTGCGGCGGCGAAGACGAAGCTGGCTTGCCTTCCACCCTCTGTTCTCCCTCCTTGTGCAT TAAGTTCCCTCCGCGGGATGCTGCATTGTTACCCCGCCCTCCCCTCTCTCATTTTTCTTGGTGTGGCTTGGGGTTTTTAGGCTTCCTGTT TTATCTCGTGTGTGTGGTGCACCAGCTATGAGGTTGTCTGTAACCCAAGCCATCAAAGGGCCTGTACATACCTAGGAGCCATGAGTTGTC >In-frame_ENST00000264202_ENST00000375267_TCGA-AH-6549_CAPZB_chr1_19811930_-_UBR4_chr1_19415471_length(amino acids)=468AA_start in transcript=49_stop in transcript=1455 MVLIGTDSIPNLHKLEQVSSDEGIGTLAENLLEALREHPDVNKKIDAARRETRAEKKRMAMAMRQKALGTLGMTTNEKGQVVTKTALLKQ MEELIEEPGLTCCICREGYKFQPTKVLGIYTFTKRVALEEMENKPRKQQGYSTVSHFNIVHYDCHLAAVRLARGREEWESAALQNANTKC NGLLPVWGPHVPESAFATCLARHNTYLQECTGQREPTYQLNIHDIKLLFLRFAMEQSFSADTGGGGRESNIHLIPYIIHTVLYVLNTTRA TSREEKNLQGFLEQPKEKWVESAFEVDGPYYFTVLALHILPPEQWRATRVEILRRLLVTSQARAVAPGGATRLTDKAVKDYSAYRSSLLF WALVDLIYNMFKKQTTPTVGGIDTGSLEPCVCEKVPTSNTEGGWSCSLAEYIRHNDMPIYEAADKALKTFQEEFMPVETFSEFLDVAGLL -------------------------------------------------------------- >In-frame_ENST00000264202_ENST00000375254_TCGA-AH-6549_CAPZB_chr1_19811930_-_UBR4_chr1_19415471_length(transcript)=1719nt_BP=52nt GGGGAGAGCCACTGACGCCGGGACCGGGACCGCCGCCGCCGCCGCCACCATGGTTCTGATTGGAACTGATTCCATCCCGAACCTGCATAA GCTGGAGCAGGTGTCCAGTGATGAGGGCATTGGGACCTTGGCAGAGAACCTGCTGGAAGCCCTGCGGGAACACCCTGACGTAAACAAGAA GATTGACGCAGCCCGCAGGGAGACCCGGGCAGAGAAGAAGCGCATGGCCATGGCAATGAGGCAGAAGGCCCTGGGCACCCTGGGCATGAC GACAAATGAAAAGGGCCAGGTCGTGACCAAGACAGCACTCCTGAAGCAGATGGAAGAGCTGATCGAGGAGCCTGGCCTCACGTGCTGCAT CTGCAGGGAGGGATACAAGTTCCAGCCCACAAAGGTCCTGGGCATTTATACCTTCACGAAGCGGGTAGCCTTGGAGGAGATGGAGAATAA GCCCCGGAAACAGCAGGGCTACAGCACCGTGTCCCACTTCAACATTGTGCACTACGACTGCCATCTGGCTGCCGTCAGGTTGGCTCGAGG CCGGGAAGAGTGGGAGAGTGCCGCCCTGCAGAATGCCAACACCAAGTGCAACGGGCTCCTTCCGGTCTGGGGACCTCATGTCCCTGAATC AGCTTTTGCCACTTGCTTGGCAAGACACAACACTTACCTCCAGGAATGTACAGGCCAGCGGGAGCCCACGTATCAGCTCAACATCCATGA CATCAAACTGCTCTTCCTGCGCTTCGCCATGGAGCAGTCGTTCAGCGCAGACACTGGCGGGGGCGGCCGGGAGAGCAACATCCACCTGAT CCCGTACATCATTCACACTGTGCTTTACGTCCTGAACACAACCCGAGCAACTTCCCGAGAAGAGAAGAACCTCCAAGGCTTTCTGGAACA GCCCAAGGAGAAGTGGGTGGAGAGTGCCTTTGAAGTGGACGGGCCCTACTATTTCACAGTCTTGGCCCTTCACATCCTGCCCCCTGAGCA GTGGAGAGCCACACGTGTGGAAATCTTGCGGAGGCTGTTGGTGACCTCGCAGGCTCGGGCAGTGGCTCCAGGTGGAGCCACCAGGCTGAC AGATAAGGCAGTGAAGGACTATTCCGCTTACCGTTCTTCCCTTCTCTTTTGGGCCCTCGTCGATCTCATTTACAACATGTTTAAGAAGGT GCCTACCAGTAACACAGAGGGAGGCTGGTCCTGCTCTCTCGCTGAGTACATCCGCCACAACGACATGCCCATCTACGAAGCTGCCGACAA AGCCCTGAAAACCTTCCAGGAGGAGTTCATGCCAGTGGAGACCTTCTCAGAGTTCCTCGATGTGGCCGGTCTTTTATCAGAAATCACCGA TCCAGAGAGCTTCCTGAAGGACCTGTTGAACTCAGTCCCCTGACCACCACACAGCAGCTGCGGCGGCGAAGACGAAGCTGGCTTGCCTTC CACCCTCTGTTCTCCCTCCTTGTGCATTAAGTTCCCTCCGCGGGATGCTGCATTGTTACCCCGCCCTCCCCTCTCTCATTTTTCTTGGTG TGGCTTGGGGTTTTTAGGCTTCCTGTTTTATCTCGTGTGTGTGGTGCACCAGCTATGAGGTTGTCTGTAACCCAAGCCATCAAAGGGCCT GTACATACCTAGGAGCCATGAGTTGTCCCGGCCAGCTTCATACTTGAGTGTGCACATCTTGAGAAATAAACAAGTGACTTAACACACATT >In-frame_ENST00000264202_ENST00000375254_TCGA-AH-6549_CAPZB_chr1_19811930_-_UBR4_chr1_19415471_length(amino acids)=447AA_start in transcript=49_stop in transcript=1392 MVLIGTDSIPNLHKLEQVSSDEGIGTLAENLLEALREHPDVNKKIDAARRETRAEKKRMAMAMRQKALGTLGMTTNEKGQVVTKTALLKQ MEELIEEPGLTCCICREGYKFQPTKVLGIYTFTKRVALEEMENKPRKQQGYSTVSHFNIVHYDCHLAAVRLARGREEWESAALQNANTKC NGLLPVWGPHVPESAFATCLARHNTYLQECTGQREPTYQLNIHDIKLLFLRFAMEQSFSADTGGGGRESNIHLIPYIIHTVLYVLNTTRA TSREEKNLQGFLEQPKEKWVESAFEVDGPYYFTVLALHILPPEQWRATRVEILRRLLVTSQARAVAPGGATRLTDKAVKDYSAYRSSLLF -------------------------------------------------------------- |
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Fusion Gene PPI Analysis for CAPZB-UBR4 |
Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in |
Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
Hgene | Hgene's interactors | Tgene | Tgene's interactors |
- Retained PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
- Lost PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
- Retained PPIs, but lost function due to frame-shift fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Related Drugs for CAPZB-UBR4 |
Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.8 2021-05-08) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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Related Diseases for CAPZB-UBR4 |
Diseases associated with fusion partners. (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Hgene | CAPZB | C0007097 | Carcinoma | 1 | CTD_human |
Hgene | CAPZB | C0024667 | Animal Mammary Neoplasms | 1 | CTD_human |
Hgene | CAPZB | C0024668 | Mammary Neoplasms, Experimental | 1 | CTD_human |
Hgene | CAPZB | C0205696 | Anaplastic carcinoma | 1 | CTD_human |
Hgene | CAPZB | C0205697 | Carcinoma, Spindle-Cell | 1 | CTD_human |
Hgene | CAPZB | C0205698 | Undifferentiated carcinoma | 1 | CTD_human |
Hgene | CAPZB | C0205699 | Carcinomatosis | 1 | CTD_human |
Hgene | CAPZB | C0948089 | Acute Coronary Syndrome | 1 | CTD_human |
Hgene | CAPZB | C1257925 | Mammary Carcinoma, Animal | 1 | CTD_human |
Tgene | UBR4 | C1720189 | Episodic Ataxia | 1 | GENOMICS_ENGLAND |
Tgene | UBR4 | C4015108 | Episodic ataxia with slurred speech | 1 | GENOMICS_ENGLAND |