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Fusion Gene Summary | |
Fusion Gene ORF analysis | |
Fusion Genomic Features | |
Fusion Protein Features | |
Fusion Gene Sequence | |
Fusion Gene PPI analysis | |
Related Drugs | |
Related Diseases |
Fusion gene:CCDC129-DEFB118 (FusionGDB2 ID:13662) |
Fusion Gene Summary for CCDC129-DEFB118 |
Fusion gene summary |
Fusion gene information | Fusion gene name: CCDC129-DEFB118 | Fusion gene ID: 13662 | Hgene | Tgene | Gene symbol | CCDC129 | DEFB118 | Gene ID | 223075 | 117285 |
Gene name | ITPR interacting domain containing 1 | defensin beta 118 | |
Synonyms | CCDC129 | C20orf63|DEFB-18|ESC42|ESP13.6 | |
Cytomap | 7p14.3 | 20q11.21 | |
Type of gene | protein-coding | protein-coding | |
Description | protein ITPRID1ITPR-interacting domain-containing protein 1coiled-coil domain containing 129coiled-coil domain-containing protein 129 | beta-defensin 118defensin, beta 18epididymal secretory protein 13.6epididymis secretory sperm binding proteinepididymus specific clone 42 | |
Modification date | 20200313 | 20200313 | |
UniProtAcc | . | . | |
Ensembl transtripts involved in fusion gene | ENST00000319386, ENST00000407970, ENST00000482748, ENST00000451887, ENST00000409210, | ENST00000253381, | |
Fusion gene scores | * DoF score | 3 X 3 X 3=27 | 5 X 2 X 6=60 |
# samples | 3 | 7 | |
** MAII score | log2(3/27*10)=0.15200309344505 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | log2(7/60*10)=0.222392421336448 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | |
Context | PubMed: CCDC129 [Title/Abstract] AND DEFB118 [Title/Abstract] AND fusion [Title/Abstract] | ||
Most frequent breakpoint | CCDC129(31618048)-DEFB118(29960660), # samples:2 | ||
Anticipated loss of major functional domain due to fusion event. |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
Partner | Gene | GO ID | GO term | PubMed ID |
Tgene | DEFB118 | GO:0031640 | killing of cells of other organism | 15033915 |
Tgene | DEFB118 | GO:0050829 | defense response to Gram-negative bacterium | 15033915 |
Tgene | DEFB118 | GO:0051673 | membrane disruption in other organism | 15033915 |
Tgene | DEFB118 | GO:0061844 | antimicrobial humoral immune response mediated by antimicrobial peptide | 15033915 |
Fusion gene breakpoints across CCDC129 (5'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
Fusion gene breakpoints across DEFB118 (3'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Source | Disease | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
ChimerDB4 | BRCA | TCGA-E2-A150-01A | CCDC129 | chr7 | 31618048 | + | DEFB118 | chr20 | 29960660 | + |
ChimerDB4 | BRCA | TCGA-E2-A150-01A | CCDC129 | chr7 | 31618048 | - | DEFB118 | chr20 | 29960660 | + |
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Fusion Gene ORF analysis for CCDC129-DEFB118 |
Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
intron-3CDS | ENST00000319386 | ENST00000253381 | CCDC129 | chr7 | 31618048 | + | DEFB118 | chr20 | 29960660 | + |
In-frame | ENST00000407970 | ENST00000253381 | CCDC129 | chr7 | 31618048 | + | DEFB118 | chr20 | 29960660 | + |
intron-3CDS | ENST00000482748 | ENST00000253381 | CCDC129 | chr7 | 31618048 | + | DEFB118 | chr20 | 29960660 | + |
In-frame | ENST00000451887 | ENST00000253381 | CCDC129 | chr7 | 31618048 | + | DEFB118 | chr20 | 29960660 | + |
In-frame | ENST00000409210 | ENST00000253381 | CCDC129 | chr7 | 31618048 | + | DEFB118 | chr20 | 29960660 | + |
ORFfinder result based on the fusion transcript sequence of in-frame fusion genes. |
Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | Seq length (transcript) | BP loci (transcript) | Predicted start (transcript) | Predicted stop (transcript) | Seq length (amino acids) |
ENST00000407970 | CCDC129 | chr7 | 31618048 | + | ENST00000253381 | DEFB118 | chr20 | 29960660 | + | 2275 | 1208 | 20 | 1282 | 420 |
ENST00000451887 | CCDC129 | chr7 | 31618048 | + | ENST00000253381 | DEFB118 | chr20 | 29960660 | + | 2327 | 1260 | 9 | 1334 | 441 |
ENST00000409210 | CCDC129 | chr7 | 31618048 | + | ENST00000253381 | DEFB118 | chr20 | 29960660 | + | 2145 | 1078 | 46 | 1152 | 368 |
DeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated. |
Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | No-coding score | Coding score |
ENST00000407970 | ENST00000253381 | CCDC129 | chr7 | 31618048 | + | DEFB118 | chr20 | 29960660 | + | 0.002147613 | 0.99785244 |
ENST00000451887 | ENST00000253381 | CCDC129 | chr7 | 31618048 | + | DEFB118 | chr20 | 29960660 | + | 0.002442754 | 0.9975573 |
ENST00000409210 | ENST00000253381 | CCDC129 | chr7 | 31618048 | + | DEFB118 | chr20 | 29960660 | + | 0.003199051 | 0.9968009 |
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Fusion Genomic Features for CCDC129-DEFB118 |
FusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints. |
Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | 1-p | p (fusion gene breakpoint) |
CCDC129 | chr7 | 31618048 | + | DEFB118 | chr20 | 29960659 | + | 0.004880888 | 0.9951191 |
CCDC129 | chr7 | 31618048 | + | DEFB118 | chr20 | 29960659 | + | 0.004880888 | 0.9951191 |
Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page. |
Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page. |
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Fusion Protein Features for CCDC129-DEFB118 |
Go to FGviewer for the breakpoints of chr7:31618048-chr20:29960660 - FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels. |
Main function of each fusion partner protein. (from UniProt) |
Hgene | Tgene |
. | . |
FUNCTION: Might normally function as a transcriptional repressor. EWS-fusion-proteins (EFPS) may play a role in the tumorigenic process. They may disturb gene expression by mimicking, or interfering with the normal function of CTD-POLII within the transcription initiation complex. They may also contribute to an aberrant activation of the fusion protein target genes. | FUNCTION: Might normally function as a transcriptional repressor. EWS-fusion-proteins (EFPS) may play a role in the tumorigenic process. They may disturb gene expression by mimicking, or interfering with the normal function of CTD-POLII within the transcription initiation complex. They may also contribute to an aberrant activation of the fusion protein target genes. |
Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | CCDC129 | chr7:31618048 | chr20:29960660 | ENST00000319386 | + | 1 | 14 | 896_937 | 0 | 897.0 | Coiled coil | Ontology_term=ECO:0000255 |
Hgene | CCDC129 | chr7:31618048 | chr20:29960660 | ENST00000407970 | + | 8 | 14 | 896_937 | 390.0 | 1045.0 | Coiled coil | Ontology_term=ECO:0000255 |
Hgene | CCDC129 | chr7:31618048 | chr20:29960660 | ENST00000409210 | + | 6 | 13 | 896_937 | 298.0 | 1153.0 | Coiled coil | Ontology_term=ECO:0000255 |
Hgene | CCDC129 | chr7:31618048 | chr20:29960660 | ENST00000451887 | + | 8 | 15 | 896_937 | 416.0 | 1063.0 | Coiled coil | Ontology_term=ECO:0000255 |
Hgene | CCDC129 | chr7:31618048 | chr20:29960660 | ENST00000319386 | + | 1 | 14 | 793_834 | 0 | 897.0 | Compositional bias | Note=Cys-rich |
Hgene | CCDC129 | chr7:31618048 | chr20:29960660 | ENST00000407970 | + | 8 | 14 | 793_834 | 390.0 | 1045.0 | Compositional bias | Note=Cys-rich |
Hgene | CCDC129 | chr7:31618048 | chr20:29960660 | ENST00000409210 | + | 6 | 13 | 793_834 | 298.0 | 1153.0 | Compositional bias | Note=Cys-rich |
Hgene | CCDC129 | chr7:31618048 | chr20:29960660 | ENST00000451887 | + | 8 | 15 | 793_834 | 416.0 | 1063.0 | Compositional bias | Note=Cys-rich |
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Fusion Gene Sequence for CCDC129-DEFB118 |
For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones. |
>In-frame_ENST00000407970_ENST00000253381_TCGA-E2-A150-01A_CCDC129_chr7_31618048_+_DEFB118_chr20_29960660_length(transcript)=2275nt_BP=1208nt TGACTTCCAGGACCGTAAGTTTGCAGAATTACTCTCCTATGATGGCACAGAAATCACAAGGATCTGACAACCTTCAGGAAGGCCAGGAAA AGAGCAAGAGAGAGATCCTGAAGTGCACCAAAAGCGCGTGGGCTCCGCTGGATGAGTGGCTGCCCCCTGACCCTGAGGAGGAAAGCCAGA GTCTCACCATCCCCATGCTGGAAGATTCCAAGCAAGAAAGTATTCAGCAGTGGCTGGACTCTGGATTCTTTGTCTCTGCAAATGAAAACT TTCAACAAGTCATTGACCGCACTGTTTCTTTGTATGAACAAGGGATGGTTCAAATGACTGTGAAAGACTACATGAGATCTTTGCATCAGT TTTCAGAAACTCCCATCCTATCCAGAGGGACCAGTTTCAACTCTTGCTATTCTACTGCAAGTGTACCACAAAGCATTCCTGAATGGCTGG AATTTTGGGAGATAGATCCAGTGGAGATTCTCTTGGATCTGGGGTTTGGTGCTGATGAGCCAGACATCTGCATGCAAATCCCAGCCAGAT TCCTTGGTTGTGGCTCAGCAGCCAGAGGAATCAACATCCGTGTTTTTCTTGAAGCTCAAAAGCAGCGAATGGACATTGAGAACCCCAACT TGTACGGTCGTTTCCGACAGCTGGAAATCCTGGACCATGTGACCAATGCCTTCTCATCTCTGCTGAGTGATGTCAGCATCCTGCCAAACA GAGCTGAAGAGAAAGCTGGAGGAGAGAGTGTGCAAAGAACCTCAGTGAGTGCCGCCAAAGAGCATCGAAGAAGAATGGGTAAACTCTTAA GGAGAGCTTCCAAACAGAACATCAGGCGGGATTGTAACCCAGAGGTATCAGAGTCCTTCAAGGTGAAGGATGAAGTTTTTGTTCCCTTTA CAAAACCATGGGATTGTGGAGCAGAGCTAGCAGCAACCTCAATCAACCACAAGCAAAATCATTTGTCTCTGTCAGTAGAACATCAGTCTC TCCAAGCCTGTGATGATTTGCTACCTTATCCTCCTCATGGTCTTCTGAGCAAGCAGTGGCCTTGCTCATCTATGCCGGCCAAGCAGGCTC CTCCTTCCTGTGTGTCTGAGGGGTCAGTCAAGGGCAGAACTCAGAAGGAGAACTTATTTCAGACTAACAAGCTCAAGAGCTTGTCTCATC TTGCAGGCAAAGGACCAGACTCATTTGAAATGGAAGAGCCTATAGTGGTGAAAAAAAATGCTGGAACAGATCAGGGCACTGCAGGAAACA ATGCAAAGATGGAGAAGCAGTGAAAGATACATGCAAAAATCTTCGAGCTTGCTGCATTCCATCCAATGAAGACCACAGGCGAGTTCCTGC GACATCTCCCACACCCTTGAGTGACTCAACACCAGGAATTATTGATGATATTTTAACAGTAAGGTTCACGACAGACTACTTTGAAGTAAG CAGCAAGAAAGATATGGTTGAAGAGTCTGAGGCGGGAAGGGGAACTGAGACCTCTCTTCCAAATGTTCACCATAGCTCATGACTTCCTCT CGGCTATCACTCACCCCTGTCCTCAGAGTGATAAACTAAGTCACATACAGATAAAGCACTGAAAACACCACAGTGACCCTCCCACCCCCC ACCAATATGTAATTCTATTAATAGAAACAGCTGTGTAAAGAAGTCTAAAATTTTCACTATTTCCAATGATAAACTCTTCAGTGCTCTTCT TGAAATGTCACATTATTTCCACAACAAGTTATAACCTATTTTTAGTATTTCTTGTTTGCTAGTGACCTATGCACAACTTCAATAGCTTAG TTAGCTATTCCAACAACAATTTCTTCATGTATCGTTCTGTCTTCTCAACAGCTGTCTTCATGGCAGCATAAGTGGTCATGATCAAAATTC TAAATCTTTGCATCTGTGAGAGTAGCTACTATGACACTAAAAGCTTTTTTTCTAGAACAGGAGACACTTCAGGTGAAAGCATTCATTCTC CTACTAACTATGGCCTTGGAGCCAGGTTTTATCTCTCACTGTAGGAAATTGGCCGCCCCAGGTGTGAGCTATGAAGACTCCTTTTTGCCC CAGTGGCTTTGGGGTTGAAATGCTGTCGAAAAGCTTTTATGGCTCTGTAGACCCATCTTTTTGACCAAGCCTTGATCACACATGGACATC CAAGGGTAATCATGGACCCCCAATTGTGGGTGAAAGGATGGATCATTTATCTACCTGATTACTGAGAGCTTTATTTGTCTCCCTCTGATA >In-frame_ENST00000407970_ENST00000253381_TCGA-E2-A150-01A_CCDC129_chr7_31618048_+_DEFB118_chr20_29960660_length(amino acids)=420AA_start in transcript=20_stop in transcript=1282 MQNYSPMMAQKSQGSDNLQEGQEKSKREILKCTKSAWAPLDEWLPPDPEEESQSLTIPMLEDSKQESIQQWLDSGFFVSANENFQQVIDR TVSLYEQGMVQMTVKDYMRSLHQFSETPILSRGTSFNSCYSTASVPQSIPEWLEFWEIDPVEILLDLGFGADEPDICMQIPARFLGCGSA ARGINIRVFLEAQKQRMDIENPNLYGRFRQLEILDHVTNAFSSLLSDVSILPNRAEEKAGGESVQRTSVSAAKEHRRRMGKLLRRASKQN IRRDCNPEVSESFKVKDEVFVPFTKPWDCGAELAATSINHKQNHLSLSVEHQSLQACDDLLPYPPHGLLSKQWPCSSMPAKQAPPSCVSE -------------------------------------------------------------- >In-frame_ENST00000451887_ENST00000253381_TCGA-E2-A150-01A_CCDC129_chr7_31618048_+_DEFB118_chr20_29960660_length(transcript)=2327nt_BP=1260nt ACACATACTTTGATGCCAACTACAGCAAGTTGCAAGACCATTTCTCTGCTGAAACTCCTTTATTCTGTTAGTTTGCAGAATTACTCTCCT ATGATGGCACAGAAATCACAAGGATCTGACAACCTTCAGGAAGGCCAGGAAAAGAGCAAGAGAGAGATCCTGAAGTGCACCAAAAGCGCG TGGGCTCCGCTGGATGAGTGGCTGCCCCCTGACCCTGAGGAGGAAAGCCAGAGTCTCACCATCCCCATGCTGGAAGATTCCAAGCAAGAA AGTATTCAGCAGTGGCTGGACTCTGGATTCTTTGTCTCTGCAAATGAAAACTTTCAACAAGTCATTGACCGCACTGTTTCTTTGTATGAA CAAGGGATGGTTCAAATGACTGTGAAAGACTACATGAGATCTTTGCATCAGTTTTCAGAAACTCCCATCCTATCCAGAGGGACCAGTTTC AACTCTTGCTATTCTACTGCAAGTGTACCACAAAGCATTCCTGAATGGCTGGAATTTTGGGAGATAGATCCAGTGGAGATTCTCTTGGAT CTGGGGTTTGGTGCTGATGAGCCAGACATCTGCATGCAAATCCCAGCCAGATTCCTTGGTTGTGGCTCAGCAGCCAGAGGAATCAACATC CGTGTTTTTCTTGAAGCTCAAAAGCAGCGAATGGACATTGAGAACCCCAACTTGTACGGTCGTTTCCGACAGCTGGAAATCCTGGACCAT GTGACCAATGCCTTCTCATCTCTGCTGAGTGATGTCAGCATCCTGCCAAACAGAGCTGAAGAGAAAGCTGGAGGAGAGAGTGTGCAAAGA ACCTCAGTGAGTGCCGCCAAAGAGCATCGAAGAAGAATGGGTAAACTCTTAAGGAGAGCTTCCAAACAGAACATCAGGCGGGATTGTAAC CCAGAGGTATCAGAGTCCTTCAAGGTGAAGGATGAAGTTTTTGTTCCCTTTACAAAACCATGGGATTGTGGAGCAGAGCTAGCAGCAACC TCAATCAACCACAAGCAAAATCATTTGTCTCTGTCAGTAGAACATCAGTCTCTCCAAGCCTGTGATGATTTGCTACCTTATCCTCCTCAT GGTCTTCTGAGCAAGCAGTGGCCTTGCTCATCTATGCCGGCCAAGCAGGCTCCTCCTTCCTGTGTGTCTGAGGGGTCAGTCAAGGGCAGA ACTCAGAAGGAGAACTTATTTCAGACTAACAAGCTCAAGAGCTTGTCTCATCTTGCAGGCAAAGGACCAGACTCATTTGAAATGGAAGAG CCTATAGTGGTGAAAAAAAATGCTGGAACAGATCAGGGCACTGCAGGAAACAATGCAAAGATGGAGAAGCAGTGAAAGATACATGCAAAA ATCTTCGAGCTTGCTGCATTCCATCCAATGAAGACCACAGGCGAGTTCCTGCGACATCTCCCACACCCTTGAGTGACTCAACACCAGGAA TTATTGATGATATTTTAACAGTAAGGTTCACGACAGACTACTTTGAAGTAAGCAGCAAGAAAGATATGGTTGAAGAGTCTGAGGCGGGAA GGGGAACTGAGACCTCTCTTCCAAATGTTCACCATAGCTCATGACTTCCTCTCGGCTATCACTCACCCCTGTCCTCAGAGTGATAAACTA AGTCACATACAGATAAAGCACTGAAAACACCACAGTGACCCTCCCACCCCCCACCAATATGTAATTCTATTAATAGAAACAGCTGTGTAA AGAAGTCTAAAATTTTCACTATTTCCAATGATAAACTCTTCAGTGCTCTTCTTGAAATGTCACATTATTTCCACAACAAGTTATAACCTA TTTTTAGTATTTCTTGTTTGCTAGTGACCTATGCACAACTTCAATAGCTTAGTTAGCTATTCCAACAACAATTTCTTCATGTATCGTTCT GTCTTCTCAACAGCTGTCTTCATGGCAGCATAAGTGGTCATGATCAAAATTCTAAATCTTTGCATCTGTGAGAGTAGCTACTATGACACT AAAAGCTTTTTTTCTAGAACAGGAGACACTTCAGGTGAAAGCATTCATTCTCCTACTAACTATGGCCTTGGAGCCAGGTTTTATCTCTCA CTGTAGGAAATTGGCCGCCCCAGGTGTGAGCTATGAAGACTCCTTTTTGCCCCAGTGGCTTTGGGGTTGAAATGCTGTCGAAAAGCTTTT ATGGCTCTGTAGACCCATCTTTTTGACCAAGCCTTGATCACACATGGACATCCAAGGGTAATCATGGACCCCCAATTGTGGGTGAAAGGA >In-frame_ENST00000451887_ENST00000253381_TCGA-E2-A150-01A_CCDC129_chr7_31618048_+_DEFB118_chr20_29960660_length(amino acids)=441AA_start in transcript=9_stop in transcript=1334 MMPTTASCKTISLLKLLYSVSLQNYSPMMAQKSQGSDNLQEGQEKSKREILKCTKSAWAPLDEWLPPDPEEESQSLTIPMLEDSKQESIQ QWLDSGFFVSANENFQQVIDRTVSLYEQGMVQMTVKDYMRSLHQFSETPILSRGTSFNSCYSTASVPQSIPEWLEFWEIDPVEILLDLGF GADEPDICMQIPARFLGCGSAARGINIRVFLEAQKQRMDIENPNLYGRFRQLEILDHVTNAFSSLLSDVSILPNRAEEKAGGESVQRTSV SAAKEHRRRMGKLLRRASKQNIRRDCNPEVSESFKVKDEVFVPFTKPWDCGAELAATSINHKQNHLSLSVEHQSLQACDDLLPYPPHGLL -------------------------------------------------------------- >In-frame_ENST00000409210_ENST00000253381_TCGA-E2-A150-01A_CCDC129_chr7_31618048_+_DEFB118_chr20_29960660_length(transcript)=2145nt_BP=1078nt TGAGTAAACAGGGTAGCATCCTTTTAGCTGGTTGTGCTTTGACTAACTGATCTGTTCTTTCTTACTTGTAGAAGATTCCAAGCAAGAAAG TATTCAGCAGTGGCTGGACTCTGGATTCTTTGTCTCTGCAAATGAAAACTTTCAACAAGTCATTGACCGCACTGTTTCTTTGTATGAACA AGGGATGGTTCAAATGACTGTGAAAGACTACATGAGATCTTTGCATCAGTTTTCAGAAACTCCCATCCTATCCAGAGGGACCAGTTTCAA CTCTTGCTATTCTACTGCAAGTGTACCACAAAGCATTCCTGAATGGCTGGAATTTTGGGAGATAGATCCAGTGGAGATTCTCTTGGATCT GGGGTTTGGTGCTGATGAGCCAGACATCTGCATGCAAATCCCAGCCAGATTCCTTGGTTGTGGCTCAGCAGCCAGAGGAATCAACATCCG TGTTTTTCTTGAAGCTCAAAAGCAGCGAATGGACATTGAGAACCCCAACTTGTACGGTCGTTTCCGACAGCTGGAAATCCTGGACCATGT GACCAATGCCTTCTCATCTCTGCTGAGTGATGTCAGCATCCTGCCAAACAGAGCTGAAGAGAAAGCTGGAGGAGAGAGTGTGCAAAGAAC CTCAGTGAGTGCCGCCAAAGAGCATCGAAGAAGAATGGGTAAACTCTTAAGGAGAGCTTCCAAACAGAACATCAGGCGGGATTGTAACCC AGAGGTATCAGAGTCCTTCAAGGTGAAGGATGAAGTTTTTGTTCCCTTTACAAAACCATGGGATTGTGGAGCAGAGCTAGCAGCAACCTC AATCAACCACAAGCAAAATCATTTGTCTCTGTCAGTAGAACATCAGTCTCTCCAAGCCTGTGATGATTTGCTACCTTATCCTCCTCATGG TCTTCTGAGCAAGCAGTGGCCTTGCTCATCTATGCCGGCCAAGCAGGCTCCTCCTTCCTGTGTGTCTGAGGGGTCAGTCAAGGGCAGAAC TCAGAAGGAGAACTTATTTCAGACTAACAAGCTCAAGAGCTTGTCTCATCTTGCAGGCAAAGGACCAGACTCATTTGAAATGGAAGAGCC TATAGTGGTGAAAAAAAATGCTGGAACAGATCAGGGCACTGCAGGAAACAATGCAAAGATGGAGAAGCAGTGAAAGATACATGCAAAAAT CTTCGAGCTTGCTGCATTCCATCCAATGAAGACCACAGGCGAGTTCCTGCGACATCTCCCACACCCTTGAGTGACTCAACACCAGGAATT ATTGATGATATTTTAACAGTAAGGTTCACGACAGACTACTTTGAAGTAAGCAGCAAGAAAGATATGGTTGAAGAGTCTGAGGCGGGAAGG GGAACTGAGACCTCTCTTCCAAATGTTCACCATAGCTCATGACTTCCTCTCGGCTATCACTCACCCCTGTCCTCAGAGTGATAAACTAAG TCACATACAGATAAAGCACTGAAAACACCACAGTGACCCTCCCACCCCCCACCAATATGTAATTCTATTAATAGAAACAGCTGTGTAAAG AAGTCTAAAATTTTCACTATTTCCAATGATAAACTCTTCAGTGCTCTTCTTGAAATGTCACATTATTTCCACAACAAGTTATAACCTATT TTTAGTATTTCTTGTTTGCTAGTGACCTATGCACAACTTCAATAGCTTAGTTAGCTATTCCAACAACAATTTCTTCATGTATCGTTCTGT CTTCTCAACAGCTGTCTTCATGGCAGCATAAGTGGTCATGATCAAAATTCTAAATCTTTGCATCTGTGAGAGTAGCTACTATGACACTAA AAGCTTTTTTTCTAGAACAGGAGACACTTCAGGTGAAAGCATTCATTCTCCTACTAACTATGGCCTTGGAGCCAGGTTTTATCTCTCACT GTAGGAAATTGGCCGCCCCAGGTGTGAGCTATGAAGACTCCTTTTTGCCCCAGTGGCTTTGGGGTTGAAATGCTGTCGAAAAGCTTTTAT GGCTCTGTAGACCCATCTTTTTGACCAAGCCTTGATCACACATGGACATCCAAGGGTAATCATGGACCCCCAATTGTGGGTGAAAGGATG >In-frame_ENST00000409210_ENST00000253381_TCGA-E2-A150-01A_CCDC129_chr7_31618048_+_DEFB118_chr20_29960660_length(amino acids)=368AA_start in transcript=46_stop in transcript=1152 MICSFLLVEDSKQESIQQWLDSGFFVSANENFQQVIDRTVSLYEQGMVQMTVKDYMRSLHQFSETPILSRGTSFNSCYSTASVPQSIPEW LEFWEIDPVEILLDLGFGADEPDICMQIPARFLGCGSAARGINIRVFLEAQKQRMDIENPNLYGRFRQLEILDHVTNAFSSLLSDVSILP NRAEEKAGGESVQRTSVSAAKEHRRRMGKLLRRASKQNIRRDCNPEVSESFKVKDEVFVPFTKPWDCGAELAATSINHKQNHLSLSVEHQ SLQACDDLLPYPPHGLLSKQWPCSSMPAKQAPPSCVSEGSVKGRTQKENLFQTNKLKSLSHLAGKGPDSFEMEEPIVVKKNAGTDQGTAG -------------------------------------------------------------- |
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Fusion Gene PPI Analysis for CCDC129-DEFB118 |
Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in |
Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
Hgene | Hgene's interactors | Tgene | Tgene's interactors |
- Retained PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
- Lost PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
- Retained PPIs, but lost function due to frame-shift fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Related Drugs for CCDC129-DEFB118 |
Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.8 2021-05-08) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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Related Diseases for CCDC129-DEFB118 |
Diseases associated with fusion partners. (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |