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	Fusion Gene Summary
	Fusion Gene ORF analysis
	Fusion Genomic Features
	Fusion Protein Features
	Fusion Gene Sequence
	Fusion Gene PPI analysis
	Related Drugs
	Related Diseases

Fusion gene:CD44-CD44 (FusionGDB2 ID:14553)

Fusion Gene Summary for CD44-CD44

Fusion gene summary

Fusion gene information	Fusion gene name: CD44-CD44
	Fusion gene ID: 14553
		Hgene	Tgene
	Gene symbol	CD44	CD44
	Gene ID	960	960
	Gene name	CD44 molecule (Indian blood group)	CD44 molecule (Indian blood group)
	Synonyms	CDW44\|CSPG8\|ECMR-III\|HCELL\|HUTCH-I\|IN\|LHR\|MC56\|MDU2\|MDU3\|MIC4\|Pgp1	CDW44\|CSPG8\|ECMR-III\|HCELL\|HUTCH-I\|IN\|LHR\|MC56\|MDU2\|MDU3\|MIC4\|Pgp1
	Cytomap	11p13	11p13
	Type of gene	protein-coding	protein-coding
	Description	CD44 antigenGP90 lymphocyte homing/adhesion receptorHermes antigenIndian blood group antigencell surface glycoprotein CD44chondroitin sulfate proteoglycan 8epicanextracellular matrix receptor IIIhematopoietic cell E- and L-selectin ligandheparan	CD44 antigenGP90 lymphocyte homing/adhesion receptorHermes antigenIndian blood group antigencell surface glycoprotein CD44chondroitin sulfate proteoglycan 8epicanextracellular matrix receptor IIIhematopoietic cell E- and L-selectin ligandheparan
	Modification date	20200329	20200329
	UniProtAcc	P16070	P16070
	Ensembl transtripts involved in fusion gene	ENST00000263398, ENST00000526025, ENST00000449691, ENST00000360158, ENST00000415148, ENST00000437706, ENST00000433354, ENST00000428726, ENST00000526669, ENST00000433892, ENST00000278386, ENST00000434472, ENST00000352818, ENST00000528922,	ENST00000263398, ENST00000526025, ENST00000449691, ENST00000360158, ENST00000415148, ENST00000437706, ENST00000433354, ENST00000428726, ENST00000526669, ENST00000433892, ENST00000278386, ENST00000434472, ENST00000352818, ENST00000528922,
Fusion gene scores	* DoF score	24 X 25 X 12=7200	12 X 14 X 4=672
	# samples	36	16
	** MAII score	log2(36/7200*10)=-4.32192809488736 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0	log2(16/672*10)=-2.0703893278914 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0
Context	PubMed: CD44 [Title/Abstract] AND CD44 [Title/Abstract] AND fusion [Title/Abstract]
Most frequent breakpoint	CD44(35252818)-CD44(35252927), # samples:1 CD44(35222883)-CD44(35223063), # samples:1 CD44(35250886)-CD44(35250675), # samples:1
Anticipated loss of major functional domain due to fusion event.	CD44-CD44 seems lost the major protein functional domain in Hgene partner, which is a tumor suppressor due to the frame-shifted ORF. CD44-CD44 seems lost the major protein functional domain in Hgene partner, which is a cell metabolism gene due to the frame-shifted ORF. CD44-CD44 seems lost the major protein functional domain in Tgene partner, which is a tumor suppressor due to the frame-shifted ORF. CD44-CD44 seems lost the major protein functional domain in Tgene partner, which is a cell metabolism gene due to the frame-shifted ORF.

* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez

Partner	Gene	GO ID	GO term	PubMed ID
Hgene	CD44	GO:0007155	cell adhesion	19703720
Hgene	CD44	GO:0016477	cell migration	22726066
Hgene	CD44	GO:0030214	hyaluronan catabolic process	17170110
Hgene	CD44	GO:0033138	positive regulation of peptidyl-serine phosphorylation	17045821
Hgene	CD44	GO:0042110	T cell activation	7528188
Hgene	CD44	GO:0043518	negative regulation of DNA damage response, signal transduction by p53 class mediator	17045821
Hgene	CD44	GO:0044344	cellular response to fibroblast growth factor stimulus	19577615
Hgene	CD44	GO:0050731	positive regulation of peptidyl-tyrosine phosphorylation	17045821
Hgene	CD44	GO:0070374	positive regulation of ERK1 and ERK2 cascade	17045821
Hgene	CD44	GO:1902166	negative regulation of intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator	17045821
Tgene	CD44	GO:0007155	cell adhesion	19703720
Tgene	CD44	GO:0016477	cell migration	22726066
Tgene	CD44	GO:0030214	hyaluronan catabolic process	17170110
Tgene	CD44	GO:0033138	positive regulation of peptidyl-serine phosphorylation	17045821
Tgene	CD44	GO:0042110	T cell activation	7528188
Tgene	CD44	GO:0043518	negative regulation of DNA damage response, signal transduction by p53 class mediator	17045821
Tgene	CD44	GO:0044344	cellular response to fibroblast growth factor stimulus	19577615
Tgene	CD44	GO:0050731	positive regulation of peptidyl-tyrosine phosphorylation	17045821
Tgene	CD44	GO:0070374	positive regulation of ERK1 and ERK2 cascade	17045821
Tgene	CD44	GO:1902166	negative regulation of intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator	17045821

Fusion gene breakpoints across CD44 (5'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.

Fusion gene breakpoints across CD44 (3'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.

Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0)
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.

Source	Disease	Sample	Hgene	Hchr	Hbp	Hstrand	Tgene	Tchr	Tbp	Tstrand
ChiTaRS5.0	N/A	AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
ChiTaRS5.0	N/A	AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
ChiTaRS5.0	N/A	BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+

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Fusion Gene ORF analysis for CD44-CD44

Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.

ORF	Henst	Tenst	Hgene	Hchr	Hbp	Hstrand	Tgene	Tchr	Tbp	Tstrand
3UTR-3UTR	ENST00000263398	ENST00000263398	CD44	chr11	35252818	-	CD44	chr11	35252927	+
3UTR-intron	ENST00000263398	ENST00000526025	CD44	chr11	35252818	-	CD44	chr11	35252927	+
3UTR-intron	ENST00000263398	ENST00000449691	CD44	chr11	35252818	-	CD44	chr11	35252927	+
3UTR-intron	ENST00000263398	ENST00000360158	CD44	chr11	35252818	-	CD44	chr11	35252927	+
3UTR-intron	ENST00000263398	ENST00000415148	CD44	chr11	35252818	-	CD44	chr11	35252927	+
3UTR-intron	ENST00000263398	ENST00000437706	CD44	chr11	35252818	-	CD44	chr11	35252927	+
3UTR-intron	ENST00000263398	ENST00000433354	CD44	chr11	35252818	-	CD44	chr11	35252927	+
3UTR-intron	ENST00000263398	ENST00000428726	CD44	chr11	35252818	-	CD44	chr11	35252927	+
3UTR-intron	ENST00000263398	ENST00000526669	CD44	chr11	35252818	-	CD44	chr11	35252927	+
3UTR-intron	ENST00000263398	ENST00000433892	CD44	chr11	35252818	-	CD44	chr11	35252927	+
3UTR-intron	ENST00000263398	ENST00000278386	CD44	chr11	35252818	-	CD44	chr11	35252927	+
3UTR-intron	ENST00000263398	ENST00000434472	CD44	chr11	35252818	-	CD44	chr11	35252927	+
3UTR-intron	ENST00000263398	ENST00000352818	CD44	chr11	35252818	-	CD44	chr11	35252927	+
3UTR-intron	ENST00000263398	ENST00000528922	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-3UTR	ENST00000526025	ENST00000263398	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000526025	ENST00000526025	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000526025	ENST00000449691	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000526025	ENST00000360158	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000526025	ENST00000415148	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000526025	ENST00000437706	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000526025	ENST00000433354	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000526025	ENST00000428726	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000526025	ENST00000526669	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000526025	ENST00000433892	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000526025	ENST00000278386	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000526025	ENST00000434472	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000526025	ENST00000352818	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000526025	ENST00000528922	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-3UTR	ENST00000449691	ENST00000263398	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000449691	ENST00000526025	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000449691	ENST00000449691	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000449691	ENST00000360158	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000449691	ENST00000415148	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000449691	ENST00000437706	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000449691	ENST00000433354	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000449691	ENST00000428726	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000449691	ENST00000526669	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000449691	ENST00000433892	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000449691	ENST00000278386	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000449691	ENST00000434472	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000449691	ENST00000352818	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000449691	ENST00000528922	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-3UTR	ENST00000360158	ENST00000263398	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000360158	ENST00000526025	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000360158	ENST00000449691	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000360158	ENST00000360158	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000360158	ENST00000415148	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000360158	ENST00000437706	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000360158	ENST00000433354	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000360158	ENST00000428726	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000360158	ENST00000526669	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000360158	ENST00000433892	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000360158	ENST00000278386	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000360158	ENST00000434472	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000360158	ENST00000352818	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000360158	ENST00000528922	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-3UTR	ENST00000415148	ENST00000263398	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000415148	ENST00000526025	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000415148	ENST00000449691	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000415148	ENST00000360158	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000415148	ENST00000415148	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000415148	ENST00000437706	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000415148	ENST00000433354	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000415148	ENST00000428726	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000415148	ENST00000526669	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000415148	ENST00000433892	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000415148	ENST00000278386	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000415148	ENST00000434472	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000415148	ENST00000352818	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000415148	ENST00000528922	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-3UTR	ENST00000437706	ENST00000263398	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000437706	ENST00000526025	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000437706	ENST00000449691	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000437706	ENST00000360158	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000437706	ENST00000415148	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000437706	ENST00000437706	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000437706	ENST00000433354	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000437706	ENST00000428726	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000437706	ENST00000526669	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000437706	ENST00000433892	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000437706	ENST00000278386	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000437706	ENST00000434472	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000437706	ENST00000352818	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000437706	ENST00000528922	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-3UTR	ENST00000433354	ENST00000263398	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000433354	ENST00000526025	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000433354	ENST00000449691	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000433354	ENST00000360158	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000433354	ENST00000415148	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000433354	ENST00000437706	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000433354	ENST00000433354	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000433354	ENST00000428726	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000433354	ENST00000526669	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000433354	ENST00000433892	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000433354	ENST00000278386	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000433354	ENST00000434472	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000433354	ENST00000352818	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000433354	ENST00000528922	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-3UTR	ENST00000428726	ENST00000263398	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000428726	ENST00000526025	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000428726	ENST00000449691	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000428726	ENST00000360158	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000428726	ENST00000415148	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000428726	ENST00000437706	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000428726	ENST00000433354	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000428726	ENST00000428726	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000428726	ENST00000526669	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000428726	ENST00000433892	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000428726	ENST00000278386	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000428726	ENST00000434472	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000428726	ENST00000352818	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000428726	ENST00000528922	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-3UTR	ENST00000526669	ENST00000263398	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000526669	ENST00000526025	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000526669	ENST00000449691	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000526669	ENST00000360158	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000526669	ENST00000415148	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000526669	ENST00000437706	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000526669	ENST00000433354	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000526669	ENST00000428726	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000526669	ENST00000526669	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000526669	ENST00000433892	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000526669	ENST00000278386	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000526669	ENST00000434472	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000526669	ENST00000352818	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000526669	ENST00000528922	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-3UTR	ENST00000433892	ENST00000263398	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000433892	ENST00000526025	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000433892	ENST00000449691	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000433892	ENST00000360158	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000433892	ENST00000415148	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000433892	ENST00000437706	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000433892	ENST00000433354	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000433892	ENST00000428726	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000433892	ENST00000526669	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000433892	ENST00000433892	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000433892	ENST00000278386	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000433892	ENST00000434472	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000433892	ENST00000352818	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000433892	ENST00000528922	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-3UTR	ENST00000278386	ENST00000263398	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000278386	ENST00000526025	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000278386	ENST00000449691	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000278386	ENST00000360158	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000278386	ENST00000415148	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000278386	ENST00000437706	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000278386	ENST00000433354	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000278386	ENST00000428726	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000278386	ENST00000526669	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000278386	ENST00000433892	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000278386	ENST00000278386	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000278386	ENST00000434472	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000278386	ENST00000352818	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000278386	ENST00000528922	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-3UTR	ENST00000434472	ENST00000263398	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000434472	ENST00000526025	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000434472	ENST00000449691	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000434472	ENST00000360158	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000434472	ENST00000415148	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000434472	ENST00000437706	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000434472	ENST00000433354	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000434472	ENST00000428726	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000434472	ENST00000526669	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000434472	ENST00000433892	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000434472	ENST00000278386	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000434472	ENST00000434472	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000434472	ENST00000352818	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000434472	ENST00000528922	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-3UTR	ENST00000352818	ENST00000263398	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000352818	ENST00000526025	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000352818	ENST00000449691	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000352818	ENST00000360158	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000352818	ENST00000415148	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000352818	ENST00000437706	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000352818	ENST00000433354	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000352818	ENST00000428726	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000352818	ENST00000526669	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000352818	ENST00000433892	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000352818	ENST00000278386	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000352818	ENST00000434472	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000352818	ENST00000352818	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000352818	ENST00000528922	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-3UTR	ENST00000528922	ENST00000263398	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000528922	ENST00000526025	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000528922	ENST00000449691	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000528922	ENST00000360158	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000528922	ENST00000415148	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000528922	ENST00000437706	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000528922	ENST00000433354	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000528922	ENST00000428726	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000528922	ENST00000526669	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000528922	ENST00000433892	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000528922	ENST00000278386	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000528922	ENST00000434472	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000528922	ENST00000352818	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000528922	ENST00000528922	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000263398	ENST00000263398	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000263398	ENST00000526025	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000263398	ENST00000449691	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000263398	ENST00000360158	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000263398	ENST00000415148	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000263398	ENST00000437706	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000263398	ENST00000433354	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000263398	ENST00000428726	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000263398	ENST00000526669	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000263398	ENST00000433892	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000263398	ENST00000278386	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000263398	ENST00000434472	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000263398	ENST00000352818	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000263398	ENST00000528922	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000526025	ENST00000263398	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000526025	ENST00000526025	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000526025	ENST00000449691	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000526025	ENST00000360158	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000526025	ENST00000415148	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000526025	ENST00000437706	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000526025	ENST00000433354	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000526025	ENST00000428726	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000526025	ENST00000526669	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000526025	ENST00000433892	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000526025	ENST00000278386	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000526025	ENST00000434472	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000526025	ENST00000352818	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000526025	ENST00000528922	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000449691	ENST00000263398	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000449691	ENST00000526025	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000449691	ENST00000449691	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000449691	ENST00000360158	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000449691	ENST00000415148	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000449691	ENST00000437706	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000449691	ENST00000433354	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000449691	ENST00000428726	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000449691	ENST00000526669	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000449691	ENST00000433892	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000449691	ENST00000278386	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000449691	ENST00000434472	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000449691	ENST00000352818	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000449691	ENST00000528922	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000360158	ENST00000263398	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000360158	ENST00000526025	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000360158	ENST00000449691	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000360158	ENST00000360158	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000360158	ENST00000415148	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000360158	ENST00000437706	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000360158	ENST00000433354	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000360158	ENST00000428726	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000360158	ENST00000526669	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000360158	ENST00000433892	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000360158	ENST00000278386	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000360158	ENST00000434472	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000360158	ENST00000352818	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000360158	ENST00000528922	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000415148	ENST00000263398	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000415148	ENST00000526025	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000415148	ENST00000449691	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000415148	ENST00000360158	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000415148	ENST00000415148	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000415148	ENST00000437706	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000415148	ENST00000433354	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000415148	ENST00000428726	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000415148	ENST00000526669	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000415148	ENST00000433892	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000415148	ENST00000278386	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000415148	ENST00000434472	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000415148	ENST00000352818	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000415148	ENST00000528922	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000437706	ENST00000263398	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000437706	ENST00000526025	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000437706	ENST00000449691	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000437706	ENST00000360158	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000437706	ENST00000415148	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000437706	ENST00000437706	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000437706	ENST00000433354	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000437706	ENST00000428726	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000437706	ENST00000526669	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000437706	ENST00000433892	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000437706	ENST00000278386	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000437706	ENST00000434472	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000437706	ENST00000352818	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000437706	ENST00000528922	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000433354	ENST00000263398	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000433354	ENST00000526025	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000433354	ENST00000449691	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000433354	ENST00000360158	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000433354	ENST00000415148	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000433354	ENST00000437706	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000433354	ENST00000433354	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000433354	ENST00000428726	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000433354	ENST00000526669	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000433354	ENST00000433892	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000433354	ENST00000278386	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000433354	ENST00000434472	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000433354	ENST00000352818	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000433354	ENST00000528922	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000428726	ENST00000263398	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000428726	ENST00000526025	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000428726	ENST00000449691	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000428726	ENST00000360158	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000428726	ENST00000415148	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000428726	ENST00000437706	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000428726	ENST00000433354	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000428726	ENST00000428726	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000428726	ENST00000526669	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000428726	ENST00000433892	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000428726	ENST00000278386	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000428726	ENST00000434472	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000428726	ENST00000352818	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000428726	ENST00000528922	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000526669	ENST00000263398	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000526669	ENST00000526025	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000526669	ENST00000449691	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000526669	ENST00000360158	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000526669	ENST00000415148	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000526669	ENST00000437706	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000526669	ENST00000433354	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000526669	ENST00000428726	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000526669	ENST00000526669	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000526669	ENST00000433892	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000526669	ENST00000278386	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000526669	ENST00000434472	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000526669	ENST00000352818	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000526669	ENST00000528922	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000433892	ENST00000263398	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000433892	ENST00000526025	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000433892	ENST00000449691	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000433892	ENST00000360158	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000433892	ENST00000415148	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000433892	ENST00000437706	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000433892	ENST00000433354	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000433892	ENST00000428726	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000433892	ENST00000526669	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000433892	ENST00000433892	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000433892	ENST00000278386	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000433892	ENST00000434472	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000433892	ENST00000352818	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000433892	ENST00000528922	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000278386	ENST00000263398	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000278386	ENST00000526025	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000278386	ENST00000449691	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000278386	ENST00000360158	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000278386	ENST00000415148	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000278386	ENST00000437706	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000278386	ENST00000433354	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000278386	ENST00000428726	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000278386	ENST00000526669	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000278386	ENST00000433892	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000278386	ENST00000278386	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000278386	ENST00000434472	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000278386	ENST00000352818	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000278386	ENST00000528922	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000434472	ENST00000263398	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000434472	ENST00000526025	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000434472	ENST00000449691	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000434472	ENST00000360158	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000434472	ENST00000415148	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000434472	ENST00000437706	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000434472	ENST00000433354	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000434472	ENST00000428726	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000434472	ENST00000526669	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000434472	ENST00000433892	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000434472	ENST00000278386	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000434472	ENST00000434472	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000434472	ENST00000352818	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000434472	ENST00000528922	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000352818	ENST00000263398	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000352818	ENST00000526025	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000352818	ENST00000449691	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000352818	ENST00000360158	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000352818	ENST00000415148	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000352818	ENST00000437706	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000352818	ENST00000433354	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000352818	ENST00000428726	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000352818	ENST00000526669	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000352818	ENST00000433892	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000352818	ENST00000278386	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000352818	ENST00000434472	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000352818	ENST00000352818	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000352818	ENST00000528922	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000528922	ENST00000263398	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000528922	ENST00000526025	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000528922	ENST00000449691	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000528922	ENST00000360158	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000528922	ENST00000415148	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000528922	ENST00000437706	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000528922	ENST00000433354	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000528922	ENST00000428726	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000528922	ENST00000526669	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000528922	ENST00000433892	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000528922	ENST00000278386	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000528922	ENST00000434472	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000528922	ENST00000352818	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000528922	ENST00000528922	CD44	chr11	35222883	-	CD44	chr11	35223063	+
3UTR-3CDS	ENST00000263398	ENST00000263398	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000263398	ENST00000526025	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000263398	ENST00000449691	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000263398	ENST00000360158	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000263398	ENST00000415148	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000263398	ENST00000437706	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000263398	ENST00000433354	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000263398	ENST00000428726	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000263398	ENST00000526669	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000263398	ENST00000433892	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000263398	ENST00000278386	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000263398	ENST00000434472	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000263398	ENST00000352818	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000263398	ENST00000528922	CD44	chr11	35250886	-	CD44	chr11	35250675	+
intron-3CDS	ENST00000526025	ENST00000263398	CD44	chr11	35250886	-	CD44	chr11	35250675	+
intron-intron	ENST00000526025	ENST00000526025	CD44	chr11	35250886	-	CD44	chr11	35250675	+
intron-intron	ENST00000526025	ENST00000449691	CD44	chr11	35250886	-	CD44	chr11	35250675	+
intron-intron	ENST00000526025	ENST00000360158	CD44	chr11	35250886	-	CD44	chr11	35250675	+
intron-intron	ENST00000526025	ENST00000415148	CD44	chr11	35250886	-	CD44	chr11	35250675	+
intron-intron	ENST00000526025	ENST00000437706	CD44	chr11	35250886	-	CD44	chr11	35250675	+
intron-intron	ENST00000526025	ENST00000433354	CD44	chr11	35250886	-	CD44	chr11	35250675	+
intron-intron	ENST00000526025	ENST00000428726	CD44	chr11	35250886	-	CD44	chr11	35250675	+
intron-intron	ENST00000526025	ENST00000526669	CD44	chr11	35250886	-	CD44	chr11	35250675	+
intron-intron	ENST00000526025	ENST00000433892	CD44	chr11	35250886	-	CD44	chr11	35250675	+
intron-intron	ENST00000526025	ENST00000278386	CD44	chr11	35250886	-	CD44	chr11	35250675	+
intron-intron	ENST00000526025	ENST00000434472	CD44	chr11	35250886	-	CD44	chr11	35250675	+
intron-intron	ENST00000526025	ENST00000352818	CD44	chr11	35250886	-	CD44	chr11	35250675	+
intron-intron	ENST00000526025	ENST00000528922	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-3CDS	ENST00000449691	ENST00000263398	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000449691	ENST00000526025	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000449691	ENST00000449691	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000449691	ENST00000360158	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000449691	ENST00000415148	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000449691	ENST00000437706	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000449691	ENST00000433354	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000449691	ENST00000428726	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000449691	ENST00000526669	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000449691	ENST00000433892	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000449691	ENST00000278386	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000449691	ENST00000434472	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000449691	ENST00000352818	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000449691	ENST00000528922	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-3CDS	ENST00000360158	ENST00000263398	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000360158	ENST00000526025	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000360158	ENST00000449691	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000360158	ENST00000360158	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000360158	ENST00000415148	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000360158	ENST00000437706	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000360158	ENST00000433354	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000360158	ENST00000428726	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000360158	ENST00000526669	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000360158	ENST00000433892	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000360158	ENST00000278386	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000360158	ENST00000434472	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000360158	ENST00000352818	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000360158	ENST00000528922	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-3CDS	ENST00000415148	ENST00000263398	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000415148	ENST00000526025	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000415148	ENST00000449691	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000415148	ENST00000360158	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000415148	ENST00000415148	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000415148	ENST00000437706	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000415148	ENST00000433354	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000415148	ENST00000428726	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000415148	ENST00000526669	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000415148	ENST00000433892	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000415148	ENST00000278386	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000415148	ENST00000434472	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000415148	ENST00000352818	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000415148	ENST00000528922	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-3CDS	ENST00000437706	ENST00000263398	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000437706	ENST00000526025	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000437706	ENST00000449691	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000437706	ENST00000360158	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000437706	ENST00000415148	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000437706	ENST00000437706	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000437706	ENST00000433354	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000437706	ENST00000428726	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000437706	ENST00000526669	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000437706	ENST00000433892	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000437706	ENST00000278386	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000437706	ENST00000434472	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000437706	ENST00000352818	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000437706	ENST00000528922	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-3CDS	ENST00000433354	ENST00000263398	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000433354	ENST00000526025	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000433354	ENST00000449691	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000433354	ENST00000360158	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000433354	ENST00000415148	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000433354	ENST00000437706	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000433354	ENST00000433354	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000433354	ENST00000428726	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000433354	ENST00000526669	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000433354	ENST00000433892	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000433354	ENST00000278386	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000433354	ENST00000434472	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000433354	ENST00000352818	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000433354	ENST00000528922	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-3CDS	ENST00000428726	ENST00000263398	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000428726	ENST00000526025	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000428726	ENST00000449691	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000428726	ENST00000360158	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000428726	ENST00000415148	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000428726	ENST00000437706	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000428726	ENST00000433354	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000428726	ENST00000428726	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000428726	ENST00000526669	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000428726	ENST00000433892	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000428726	ENST00000278386	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000428726	ENST00000434472	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000428726	ENST00000352818	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000428726	ENST00000528922	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-3CDS	ENST00000526669	ENST00000263398	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000526669	ENST00000526025	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000526669	ENST00000449691	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000526669	ENST00000360158	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000526669	ENST00000415148	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000526669	ENST00000437706	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000526669	ENST00000433354	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000526669	ENST00000428726	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000526669	ENST00000526669	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000526669	ENST00000433892	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000526669	ENST00000278386	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000526669	ENST00000434472	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000526669	ENST00000352818	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000526669	ENST00000528922	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-3CDS	ENST00000433892	ENST00000263398	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000433892	ENST00000526025	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000433892	ENST00000449691	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000433892	ENST00000360158	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000433892	ENST00000415148	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000433892	ENST00000437706	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000433892	ENST00000433354	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000433892	ENST00000428726	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000433892	ENST00000526669	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000433892	ENST00000433892	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000433892	ENST00000278386	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000433892	ENST00000434472	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000433892	ENST00000352818	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000433892	ENST00000528922	CD44	chr11	35250886	-	CD44	chr11	35250675	+
Frame-shift	ENST00000278386	ENST00000263398	CD44	chr11	35250886	-	CD44	chr11	35250675	+
5CDS-intron	ENST00000278386	ENST00000526025	CD44	chr11	35250886	-	CD44	chr11	35250675	+
5CDS-intron	ENST00000278386	ENST00000449691	CD44	chr11	35250886	-	CD44	chr11	35250675	+
5CDS-intron	ENST00000278386	ENST00000360158	CD44	chr11	35250886	-	CD44	chr11	35250675	+
5CDS-intron	ENST00000278386	ENST00000415148	CD44	chr11	35250886	-	CD44	chr11	35250675	+
5CDS-intron	ENST00000278386	ENST00000437706	CD44	chr11	35250886	-	CD44	chr11	35250675	+
5CDS-intron	ENST00000278386	ENST00000433354	CD44	chr11	35250886	-	CD44	chr11	35250675	+
5CDS-intron	ENST00000278386	ENST00000428726	CD44	chr11	35250886	-	CD44	chr11	35250675	+
5CDS-intron	ENST00000278386	ENST00000526669	CD44	chr11	35250886	-	CD44	chr11	35250675	+
5CDS-intron	ENST00000278386	ENST00000433892	CD44	chr11	35250886	-	CD44	chr11	35250675	+
5CDS-intron	ENST00000278386	ENST00000278386	CD44	chr11	35250886	-	CD44	chr11	35250675	+
5CDS-intron	ENST00000278386	ENST00000434472	CD44	chr11	35250886	-	CD44	chr11	35250675	+
5CDS-intron	ENST00000278386	ENST00000352818	CD44	chr11	35250886	-	CD44	chr11	35250675	+
5CDS-intron	ENST00000278386	ENST00000528922	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-3CDS	ENST00000434472	ENST00000263398	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000434472	ENST00000526025	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000434472	ENST00000449691	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000434472	ENST00000360158	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000434472	ENST00000415148	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000434472	ENST00000437706	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000434472	ENST00000433354	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000434472	ENST00000428726	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000434472	ENST00000526669	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000434472	ENST00000433892	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000434472	ENST00000278386	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000434472	ENST00000434472	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000434472	ENST00000352818	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000434472	ENST00000528922	CD44	chr11	35250886	-	CD44	chr11	35250675	+
In-frame	ENST00000352818	ENST00000263398	CD44	chr11	35250886	-	CD44	chr11	35250675	+
5CDS-intron	ENST00000352818	ENST00000526025	CD44	chr11	35250886	-	CD44	chr11	35250675	+
5CDS-intron	ENST00000352818	ENST00000449691	CD44	chr11	35250886	-	CD44	chr11	35250675	+
5CDS-intron	ENST00000352818	ENST00000360158	CD44	chr11	35250886	-	CD44	chr11	35250675	+
5CDS-intron	ENST00000352818	ENST00000415148	CD44	chr11	35250886	-	CD44	chr11	35250675	+
5CDS-intron	ENST00000352818	ENST00000437706	CD44	chr11	35250886	-	CD44	chr11	35250675	+
5CDS-intron	ENST00000352818	ENST00000433354	CD44	chr11	35250886	-	CD44	chr11	35250675	+
5CDS-intron	ENST00000352818	ENST00000428726	CD44	chr11	35250886	-	CD44	chr11	35250675	+
5CDS-intron	ENST00000352818	ENST00000526669	CD44	chr11	35250886	-	CD44	chr11	35250675	+
5CDS-intron	ENST00000352818	ENST00000433892	CD44	chr11	35250886	-	CD44	chr11	35250675	+
5CDS-intron	ENST00000352818	ENST00000278386	CD44	chr11	35250886	-	CD44	chr11	35250675	+
5CDS-intron	ENST00000352818	ENST00000434472	CD44	chr11	35250886	-	CD44	chr11	35250675	+
5CDS-intron	ENST00000352818	ENST00000352818	CD44	chr11	35250886	-	CD44	chr11	35250675	+
5CDS-intron	ENST00000352818	ENST00000528922	CD44	chr11	35250886	-	CD44	chr11	35250675	+
intron-3CDS	ENST00000528922	ENST00000263398	CD44	chr11	35250886	-	CD44	chr11	35250675	+
intron-intron	ENST00000528922	ENST00000526025	CD44	chr11	35250886	-	CD44	chr11	35250675	+
intron-intron	ENST00000528922	ENST00000449691	CD44	chr11	35250886	-	CD44	chr11	35250675	+
intron-intron	ENST00000528922	ENST00000360158	CD44	chr11	35250886	-	CD44	chr11	35250675	+
intron-intron	ENST00000528922	ENST00000415148	CD44	chr11	35250886	-	CD44	chr11	35250675	+
intron-intron	ENST00000528922	ENST00000437706	CD44	chr11	35250886	-	CD44	chr11	35250675	+
intron-intron	ENST00000528922	ENST00000433354	CD44	chr11	35250886	-	CD44	chr11	35250675	+
intron-intron	ENST00000528922	ENST00000428726	CD44	chr11	35250886	-	CD44	chr11	35250675	+
intron-intron	ENST00000528922	ENST00000526669	CD44	chr11	35250886	-	CD44	chr11	35250675	+
intron-intron	ENST00000528922	ENST00000433892	CD44	chr11	35250886	-	CD44	chr11	35250675	+
intron-intron	ENST00000528922	ENST00000278386	CD44	chr11	35250886	-	CD44	chr11	35250675	+
intron-intron	ENST00000528922	ENST00000434472	CD44	chr11	35250886	-	CD44	chr11	35250675	+
intron-intron	ENST00000528922	ENST00000352818	CD44	chr11	35250886	-	CD44	chr11	35250675	+
intron-intron	ENST00000528922	ENST00000528922	CD44	chr11	35250886	-	CD44	chr11	35250675	+

ORFfinder result based on the fusion transcript sequence of in-frame fusion genes.

Henst

Tenst

Hgene

Hchr

Hbp

Hstrand

Tgene

Tchr

Tbp

Tstrand

Seq length
(transcript)

BP loci
(transcript)

Predicted start
(transcript)

Predicted stop
(transcript)

Seq length
(amino acids)

DeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated.

Henst

Tenst

Hgene

Hchr

Hbp

Hstrand

Tgene

Tchr

Tbp

Tstrand

No-coding score

Coding score

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Fusion Genomic Features for CD44-CD44

FusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints.

Hgene

Hchr

Hbp

Hstrand

Tgene

Tchr

Tbp

Tstrand

1-p

p (fusion gene breakpoint)

Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page.

Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page.

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Fusion Protein Features for CD44-CD44

Go to
FGviewer for the breakpoints of chr11:35250886-chr11:35250675
.
- FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels.

Main function of each fusion partner protein. (from UniProt)

Hgene	Tgene
CD44 P16070	CD44 P16070
FUNCTION: Cell-surface receptor that plays a role in cell-cell interactions, cell adhesion and migration, helping them to sense and respond to changes in the tissue microenvironment (PubMed:16541107, PubMed:19703720, PubMed:22726066). Participates thereby in a wide variety of cellular functions including the activation, recirculation and homing of T-lymphocytes, hematopoiesis, inflammation and response to bacterial infection (PubMed:7528188). Engages, through its ectodomain, extracellular matrix components such as hyaluronan/HA, collagen, growth factors, cytokines or proteases and serves as a platform for signal transduction by assembling, via its cytoplasmic domain, protein complexes containing receptor kinases and membrane proteases (PubMed:18757307, PubMed:23589287). Such effectors include PKN2, the RhoGTPases RAC1 and RHOA, Rho-kinases and phospholipase C that coordinate signaling pathways promoting calcium mobilization and actin-mediated cytoskeleton reorganization essential for cell migration and adhesion (PubMed:15123640). {ECO:0000269\|PubMed:15123640, ECO:0000269\|PubMed:16541107, ECO:0000269\|PubMed:18757307, ECO:0000269\|PubMed:19703720, ECO:0000269\|PubMed:22726066, ECO:0000269\|PubMed:23589287, ECO:0000269\|PubMed:7528188}.	FUNCTION: Cell-surface receptor that plays a role in cell-cell interactions, cell adhesion and migration, helping them to sense and respond to changes in the tissue microenvironment (PubMed:16541107, PubMed:19703720, PubMed:22726066). Participates thereby in a wide variety of cellular functions including the activation, recirculation and homing of T-lymphocytes, hematopoiesis, inflammation and response to bacterial infection (PubMed:7528188). Engages, through its ectodomain, extracellular matrix components such as hyaluronan/HA, collagen, growth factors, cytokines or proteases and serves as a platform for signal transduction by assembling, via its cytoplasmic domain, protein complexes containing receptor kinases and membrane proteases (PubMed:18757307, PubMed:23589287). Such effectors include PKN2, the RhoGTPases RAC1 and RHOA, Rho-kinases and phospholipase C that coordinate signaling pathways promoting calcium mobilization and actin-mediated cytoskeleton reorganization essential for cell migration and adhesion (PubMed:15123640). {ECO:0000269\|PubMed:15123640, ECO:0000269\|PubMed:16541107, ECO:0000269\|PubMed:18757307, ECO:0000269\|PubMed:19703720, ECO:0000269\|PubMed:22726066, ECO:0000269\|PubMed:23589287, ECO:0000269\|PubMed:7528188}.

Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at
download page

* Minus value of BPloci means that the break pointn is located before the CDS.

- In-frame and retained protein feature among the 13 regional features.

Partner

Gene

Hbp

Tbp

ENST

Strand

BPexon

TotalExon

Protein feature loci

*BPloci

TotalLen

Protein feature

Protein feature note

Hgene

CD44

chr11:35250886

chr11:35250675

ENST00000278386

150_158

155.33333333333334

140.0

Compositional bias

Note=Arg/Lys-rich (basic)

Hgene

CD44

chr11:35250886

chr11:35250675

ENST00000352818

150_158

341.0

Compositional bias

Note=Arg/Lys-rich (basic)

Hgene

CD44

chr11:35250886

chr11:35250675

ENST00000278386

32_120

155.33333333333334

140.0

Domain

Link

Hgene

CD44

chr11:35250886

chr11:35250675

ENST00000352818

32_120

341.0

Domain

Link

Hgene

CD44

chr11:35250886

chr11:35250675

ENST00000278386

224_649

155.33333333333334

140.0

Region

Note=Stem

Hgene

CD44

chr11:35250886

chr11:35250675

ENST00000352818

224_649

341.0

Region

Note=Stem

Hgene

CD44

chr11:35250886

chr11:35250675

ENST00000278386

21_649

155.33333333333334

140.0

Topological domain

Extracellular

Hgene

CD44

chr11:35250886

chr11:35250675

ENST00000278386

671_742

155.33333333333334

140.0

Topological domain

Cytoplasmic

Hgene

CD44

chr11:35250886

chr11:35250675

ENST00000352818

21_649

341.0

Topological domain

Extracellular

Hgene

CD44

chr11:35250886

chr11:35250675

ENST00000352818

671_742

341.0

Topological domain

Cytoplasmic

Hgene

CD44

chr11:35250886

chr11:35250675

ENST00000278386

650_670

155.33333333333334

140.0

Transmembrane

Helical

Hgene

CD44

chr11:35250886

chr11:35250675

ENST00000352818

650_670

341.0

Transmembrane

Helical

Tgene

CD44

chr11:35250886

chr11:35250675

ENST00000278386

150_158

87.0

140.0

Compositional bias

Note=Arg/Lys-rich (basic)

Tgene

CD44

chr11:35250886

chr11:35250675

ENST00000278386

224_649

87.0

140.0

Region

Note=Stem

Tgene

CD44

chr11:35250886

chr11:35250675

ENST00000263398

671_742

293.6666666666667

362.0

Topological domain

Cytoplasmic

Tgene

CD44

chr11:35250886

chr11:35250675

ENST00000278386

671_742

87.0

140.0

Topological domain

Cytoplasmic

Tgene

CD44

chr11:35250886

chr11:35250675

ENST00000352818

671_742

272.6666666666667

341.0

Topological domain

Cytoplasmic

Tgene

CD44

chr11:35250886

chr11:35250675

ENST00000360158

671_742

328.6666666666667

397.0

Topological domain

Cytoplasmic

Tgene

CD44

chr11:35250886

chr11:35250675

ENST00000415148

671_742

631.6666666666666

700.0

Topological domain

Cytoplasmic

Tgene

CD44

chr11:35250886

chr11:35250675

ENST00000433892

671_742

425.6666666666667

494.0

Topological domain

Cytoplasmic

Tgene

CD44

chr11:35250886

chr11:35250675

ENST00000434472

671_742

361.6666666666667

430.0

Topological domain

Cytoplasmic

Tgene

CD44

chr11:35250886

chr11:35250675

ENST00000437706

671_742

606.6666666666666

675.0

Topological domain

Cytoplasmic

Tgene

CD44

chr11:35250886

chr11:35250675

ENST00000449691

671_742

631.6666666666666

700.0

Topological domain

Cytoplasmic

Tgene

CD44

chr11:35250886

chr11:35250675

ENST00000263398

650_670

293.6666666666667

362.0

Transmembrane

Helical

Tgene

CD44

chr11:35250886

chr11:35250675

ENST00000278386

650_670

87.0

140.0

Transmembrane

Helical

Tgene

CD44

chr11:35250886

chr11:35250675

ENST00000352818

650_670

272.6666666666667

341.0

Transmembrane

Helical

Tgene

CD44

chr11:35250886

chr11:35250675

ENST00000360158

650_670

328.6666666666667

397.0

Transmembrane

Helical

Tgene

CD44

chr11:35250886

chr11:35250675

ENST00000415148

650_670

631.6666666666666

700.0

Transmembrane

Helical

Tgene

CD44

chr11:35250886

chr11:35250675

ENST00000433892

650_670

425.6666666666667

494.0

Transmembrane

Helical

Tgene

CD44

chr11:35250886

chr11:35250675

ENST00000434472

650_670

361.6666666666667

430.0

Transmembrane

Helical

Tgene

CD44

chr11:35250886

chr11:35250675

ENST00000437706

650_670

606.6666666666666

675.0

Transmembrane

Helical

Tgene

CD44

chr11:35250886

chr11:35250675

ENST00000449691

650_670

631.6666666666666

700.0

Transmembrane

Helical

- In-frame and not-retained protein feature among the 13 regional features.

Partner

Gene

Hbp

Tbp

ENST

Strand

BPexon

TotalExon

Protein feature loci

*BPloci

TotalLen

Protein feature

Protein feature note

Hgene

CD44

chr11:35250886

chr11:35250675

ENST00000263398

150_158

362.0

Compositional bias

Note=Arg/Lys-rich (basic)

Hgene

CD44

chr11:35250886

chr11:35250675

ENST00000360158

150_158

397.0

Compositional bias

Note=Arg/Lys-rich (basic)

Hgene

CD44

chr11:35250886

chr11:35250675

ENST00000415148

150_158

700.0

Compositional bias

Note=Arg/Lys-rich (basic)

Hgene

CD44

chr11:35250886

chr11:35250675

ENST00000428726

150_158

743.0

Compositional bias

Note=Arg/Lys-rich (basic)

Hgene

CD44

chr11:35250886

chr11:35250675

ENST00000433892

150_158

494.0

Compositional bias

Note=Arg/Lys-rich (basic)

Hgene

CD44

chr11:35250886

chr11:35250675

ENST00000434472

150_158

430.0

Compositional bias

Note=Arg/Lys-rich (basic)

Hgene

CD44

chr11:35250886

chr11:35250675

ENST00000437706

150_158

675.0

Compositional bias

Note=Arg/Lys-rich (basic)

Hgene

CD44

chr11:35250886

chr11:35250675

ENST00000449691

150_158

700.0

Compositional bias

Note=Arg/Lys-rich (basic)

Hgene

CD44

chr11:35250886

chr11:35250675

ENST00000263398

32_120

362.0

Domain

Link

Hgene

CD44

chr11:35250886

chr11:35250675

ENST00000360158

32_120

397.0

Domain

Link

Hgene

CD44

chr11:35250886

chr11:35250675

ENST00000415148

32_120

700.0

Domain

Link

Hgene

CD44

chr11:35250886

chr11:35250675

ENST00000428726

32_120

743.0

Domain

Link

Hgene

CD44

chr11:35250886

chr11:35250675

ENST00000433892

32_120

494.0

Domain

Link

Hgene

CD44

chr11:35250886

chr11:35250675

ENST00000434472

32_120

430.0

Domain

Link

Hgene

CD44

chr11:35250886

chr11:35250675

ENST00000437706

32_120

675.0

Domain

Link

Hgene

CD44

chr11:35250886

chr11:35250675

ENST00000449691

32_120

700.0

Domain

Link

Hgene

CD44

chr11:35250886

chr11:35250675

ENST00000263398

224_649

362.0

Region

Note=Stem

Hgene

CD44

chr11:35250886

chr11:35250675

ENST00000360158

224_649

397.0

Region

Note=Stem

Hgene

CD44

chr11:35250886

chr11:35250675

ENST00000415148

224_649

700.0

Region

Note=Stem

Hgene

CD44

chr11:35250886

chr11:35250675

ENST00000428726

224_649

743.0

Region

Note=Stem

Hgene

CD44

chr11:35250886

chr11:35250675

ENST00000433892

224_649

494.0

Region

Note=Stem

Hgene

CD44

chr11:35250886

chr11:35250675

ENST00000434472

224_649

430.0

Region

Note=Stem

Hgene

CD44

chr11:35250886

chr11:35250675

ENST00000437706

224_649

675.0

Region

Note=Stem

Hgene

CD44

chr11:35250886

chr11:35250675

ENST00000449691

224_649

700.0

Region

Note=Stem

Hgene

CD44

chr11:35250886

chr11:35250675

ENST00000263398

21_649

362.0

Topological domain

Extracellular

Hgene

CD44

chr11:35250886

chr11:35250675

ENST00000263398

671_742

362.0

Topological domain

Cytoplasmic

Hgene

CD44

chr11:35250886

chr11:35250675

ENST00000360158

21_649

397.0

Topological domain

Extracellular

Hgene

CD44

chr11:35250886

chr11:35250675

ENST00000360158

671_742

397.0

Topological domain

Cytoplasmic

Hgene

CD44

chr11:35250886

chr11:35250675

ENST00000415148

21_649

700.0

Topological domain

Extracellular

Hgene

CD44

chr11:35250886

chr11:35250675

ENST00000415148

671_742

700.0

Topological domain

Cytoplasmic

Hgene

CD44

chr11:35250886

chr11:35250675

ENST00000428726

21_649

743.0

Topological domain

Extracellular

Hgene

CD44

chr11:35250886

chr11:35250675

ENST00000428726

671_742

743.0

Topological domain

Cytoplasmic

Hgene

CD44

chr11:35250886

chr11:35250675

ENST00000433892

21_649

494.0

Topological domain

Extracellular

Hgene

CD44

chr11:35250886

chr11:35250675

ENST00000433892

671_742

494.0

Topological domain

Cytoplasmic

Hgene

CD44

chr11:35250886

chr11:35250675

ENST00000434472

21_649

430.0

Topological domain

Extracellular

Hgene

CD44

chr11:35250886

chr11:35250675

ENST00000434472

671_742

430.0

Topological domain

Cytoplasmic

Hgene

CD44

chr11:35250886

chr11:35250675

ENST00000437706

21_649

675.0

Topological domain

Extracellular

Hgene

CD44

chr11:35250886

chr11:35250675

ENST00000437706

671_742

675.0

Topological domain

Cytoplasmic

Hgene

CD44

chr11:35250886

chr11:35250675

ENST00000449691

21_649

700.0

Topological domain

Extracellular

Hgene

CD44

chr11:35250886

chr11:35250675

ENST00000449691

671_742

700.0

Topological domain

Cytoplasmic

Hgene

CD44

chr11:35250886

chr11:35250675

ENST00000263398

650_670

362.0

Transmembrane

Helical

Hgene

CD44

chr11:35250886

chr11:35250675

ENST00000360158

650_670

397.0

Transmembrane

Helical

Hgene

CD44

chr11:35250886

chr11:35250675

ENST00000415148

650_670

700.0

Transmembrane

Helical

Hgene

CD44

chr11:35250886

chr11:35250675

ENST00000428726

650_670

743.0

Transmembrane

Helical

Hgene

CD44

chr11:35250886

chr11:35250675

ENST00000433892

650_670

494.0

Transmembrane

Helical

Hgene

CD44

chr11:35250886

chr11:35250675

ENST00000434472

650_670

430.0

Transmembrane

Helical

Hgene

CD44

chr11:35250886

chr11:35250675

ENST00000437706

650_670

675.0

Transmembrane

Helical

Hgene

CD44

chr11:35250886

chr11:35250675

ENST00000449691

650_670

700.0

Transmembrane

Helical

Tgene

CD44

chr11:35250886

chr11:35250675

ENST00000263398

150_158

293.6666666666667

362.0

Compositional bias

Note=Arg/Lys-rich (basic)

Tgene

CD44

chr11:35250886

chr11:35250675

ENST00000352818

150_158

272.6666666666667

341.0

Compositional bias

Note=Arg/Lys-rich (basic)

Tgene

CD44

chr11:35250886

chr11:35250675

ENST00000360158

150_158

328.6666666666667

397.0

Compositional bias

Note=Arg/Lys-rich (basic)

Tgene

CD44

chr11:35250886

chr11:35250675

ENST00000415148

150_158

631.6666666666666

700.0

Compositional bias

Note=Arg/Lys-rich (basic)

Tgene

CD44

chr11:35250886

chr11:35250675

ENST00000428726

150_158

674.6666666666666

743.0

Compositional bias

Note=Arg/Lys-rich (basic)

Tgene

CD44

chr11:35250886

chr11:35250675

ENST00000433892

150_158

425.6666666666667

494.0

Compositional bias

Note=Arg/Lys-rich (basic)

Tgene

CD44

chr11:35250886

chr11:35250675

ENST00000434472

150_158

361.6666666666667

430.0

Compositional bias

Note=Arg/Lys-rich (basic)

Tgene

CD44

chr11:35250886

chr11:35250675

ENST00000437706

150_158

606.6666666666666

675.0

Compositional bias

Note=Arg/Lys-rich (basic)

Tgene

CD44

chr11:35250886

chr11:35250675

ENST00000449691

150_158

631.6666666666666

700.0

Compositional bias

Note=Arg/Lys-rich (basic)

Tgene

CD44

chr11:35250886

chr11:35250675

ENST00000263398

32_120

293.6666666666667

362.0

Domain

Link

Tgene

CD44

chr11:35250886

chr11:35250675

ENST00000278386

32_120

87.0

140.0

Domain

Link

Tgene

CD44

chr11:35250886

chr11:35250675

ENST00000352818

32_120

272.6666666666667

341.0

Domain

Link

Tgene

CD44

chr11:35250886

chr11:35250675

ENST00000360158

32_120

328.6666666666667

397.0

Domain

Link

Tgene

CD44

chr11:35250886

chr11:35250675

ENST00000415148

32_120

631.6666666666666

700.0

Domain

Link

Tgene

CD44

chr11:35250886

chr11:35250675

ENST00000428726

32_120

674.6666666666666

743.0

Domain

Link

Tgene

CD44

chr11:35250886

chr11:35250675

ENST00000433892

32_120

425.6666666666667

494.0

Domain

Link

Tgene

CD44

chr11:35250886

chr11:35250675

ENST00000434472

32_120

361.6666666666667

430.0

Domain

Link

Tgene

CD44

chr11:35250886

chr11:35250675

ENST00000437706

32_120

606.6666666666666

675.0

Domain

Link

Tgene

CD44

chr11:35250886

chr11:35250675

ENST00000449691

32_120

631.6666666666666

700.0

Domain

Link

Tgene

CD44

chr11:35250886

chr11:35250675

ENST00000263398

224_649

293.6666666666667

362.0

Region

Note=Stem

Tgene

CD44

chr11:35250886

chr11:35250675

ENST00000352818

224_649

272.6666666666667

341.0

Region

Note=Stem

Tgene

CD44

chr11:35250886

chr11:35250675

ENST00000360158

224_649

328.6666666666667

397.0

Region

Note=Stem

Tgene

CD44

chr11:35250886

chr11:35250675

ENST00000415148

224_649

631.6666666666666

700.0

Region

Note=Stem

Tgene

CD44

chr11:35250886

chr11:35250675

ENST00000428726

224_649

674.6666666666666

743.0

Region

Note=Stem

Tgene

CD44

chr11:35250886

chr11:35250675

ENST00000433892

224_649

425.6666666666667

494.0

Region

Note=Stem

Tgene

CD44

chr11:35250886

chr11:35250675

ENST00000434472

224_649

361.6666666666667

430.0

Region

Note=Stem

Tgene

CD44

chr11:35250886

chr11:35250675

ENST00000437706

224_649

606.6666666666666

675.0

Region

Note=Stem

Tgene

CD44

chr11:35250886

chr11:35250675

ENST00000449691

224_649

631.6666666666666

700.0

Region

Note=Stem

Tgene

CD44

chr11:35250886

chr11:35250675

ENST00000263398

21_649

293.6666666666667

362.0

Topological domain

Extracellular

Tgene

CD44

chr11:35250886

chr11:35250675

ENST00000278386

21_649

87.0

140.0

Topological domain

Extracellular

Tgene

CD44

chr11:35250886

chr11:35250675

ENST00000352818

21_649

272.6666666666667

341.0

Topological domain

Extracellular

Tgene

CD44

chr11:35250886

chr11:35250675

ENST00000360158

21_649

328.6666666666667

397.0

Topological domain

Extracellular

Tgene

CD44

chr11:35250886

chr11:35250675

ENST00000415148

21_649

631.6666666666666

700.0

Topological domain

Extracellular

Tgene

CD44

chr11:35250886

chr11:35250675

ENST00000428726

21_649

674.6666666666666

743.0

Topological domain

Extracellular

Tgene

CD44

chr11:35250886

chr11:35250675

ENST00000428726

671_742

674.6666666666666

743.0

Topological domain

Cytoplasmic

Tgene

CD44

chr11:35250886

chr11:35250675

ENST00000433892

21_649

425.6666666666667

494.0

Topological domain

Extracellular

Tgene

CD44

chr11:35250886

chr11:35250675

ENST00000434472

21_649

361.6666666666667

430.0

Topological domain

Extracellular

Tgene

CD44

chr11:35250886

chr11:35250675

ENST00000437706

21_649

606.6666666666666

675.0

Topological domain

Extracellular

Tgene

CD44

chr11:35250886

chr11:35250675

ENST00000449691

21_649

631.6666666666666

700.0

Topological domain

Extracellular

Tgene

CD44

chr11:35250886

chr11:35250675

ENST00000428726

650_670

674.6666666666666

743.0

Transmembrane

Helical

Top

Fusion Gene Sequence for CD44-CD44

For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones.

Top

Fusion Gene PPI Analysis for CD44-CD44

Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in
ChiPPI page.

Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)

Hgene

Hgene's interactors

Tgene

Tgene's interactors

- Retained PPIs in in-frame fusion.

Partner

Gene

Hbp

Tbp

ENST

Strand

BPexon

TotalExon

Protein feature loci

*BPloci

TotalLen

Still interaction with

- Lost PPIs in in-frame fusion.

Partner

Gene

Hbp

Tbp

ENST

Strand

BPexon

TotalExon

Protein feature loci

*BPloci

TotalLen

Interaction lost with

- Retained PPIs, but lost function due to frame-shift fusion.

Partner

Gene

Hbp

Tbp

ENST

Strand

BPexon

TotalExon

Protein feature loci

*BPloci

TotalLen

Interaction lost with

Top

Related Drugs for CD44-CD44

Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.8 2021-05-08)

Partner	Gene	UniProtAcc	DrugBank ID	Drug name	Drug activity	Drug type	Drug status
Hgene	CD44	P16070	DB08818	Hyaluronic acid		Small molecule	Approved\|Vet_approved
Hgene	CD44	P16070	DB08818	Hyaluronic acid		Small molecule	Approved\|Vet_approved
Hgene	CD44	P16070	DB08818	Hyaluronic acid		Small molecule	Approved\|Vet_approved
Hgene	CD44	P16070	DB08818	Hyaluronic acid		Small molecule	Approved\|Vet_approved
Hgene	CD44	P16070	DB08818	Hyaluronic acid		Small molecule	Approved\|Vet_approved
Tgene	CD44	P16070	DB08818	Hyaluronic acid		Small molecule	Approved\|Vet_approved
Tgene	CD44	P16070	DB08818	Hyaluronic acid		Small molecule	Approved\|Vet_approved
Tgene	CD44	P16070	DB08818	Hyaluronic acid		Small molecule	Approved\|Vet_approved
Tgene	CD44	P16070	DB08818	Hyaluronic acid		Small molecule	Approved\|Vet_approved
Tgene	CD44	P16070	DB08818	Hyaluronic acid		Small molecule	Approved\|Vet_approved

Top

Related Diseases for CD44-CD44

Diseases associated with fusion partners.
(DisGeNet 4.0)

Partner	Gene	Disease ID	Disease name	# pubmeds	Source
Hgene	CD44	C0023487	Acute Promyelocytic Leukemia	2	CTD_human
Hgene	CD44	C0009405	Hereditary Nonpolyposis Colorectal Neoplasms	1	CTD_human
Hgene	CD44	C0011616	Contact Dermatitis	1	CTD_human
Hgene	CD44	C0017661	IGA Glomerulonephritis	1	CTD_human
Hgene	CD44	C0022660	Kidney Failure, Acute	1	CTD_human
Hgene	CD44	C0023467	Leukemia, Myelocytic, Acute	1	CTD_human
Hgene	CD44	C0024623	Malignant neoplasm of stomach	1	CTD_human
Hgene	CD44	C0024668	Mammary Neoplasms, Experimental	1	CTD_human
Hgene	CD44	C0026998	Acute Myeloid Leukemia, M1	1	CTD_human
Hgene	CD44	C0027627	Neoplasm Metastasis	1	CTD_human
Hgene	CD44	C0027746	Nerve Degeneration	1	CTD_human
Hgene	CD44	C0030297	Pancreatic Neoplasm	1	CTD_human
Hgene	CD44	C0032580	Adenomatous Polyposis Coli	1	CTD_human
Hgene	CD44	C0037274	Dermatologic disorders	1	CTD_human
Hgene	CD44	C0038356	Stomach Neoplasms	1	CTD_human
Hgene	CD44	C0042900	Vitiligo	1	CTD_human
Hgene	CD44	C0162351	Contact hypersensitivity	1	CTD_human
Hgene	CD44	C0274861	Arsenic Poisoning, Inorganic	1	CTD_human
Hgene	CD44	C0274862	Nervous System, Organic Arsenic Poisoning	1	CTD_human
Hgene	CD44	C0311375	Arsenic Poisoning	1	CTD_human
Hgene	CD44	C0346647	Malignant neoplasm of pancreas	1	CTD_human
Hgene	CD44	C0751851	Arsenic Encephalopathy	1	CTD_human
Hgene	CD44	C0751852	Arsenic Induced Polyneuropathy	1	CTD_human
Hgene	CD44	C1333990	Hereditary Nonpolyposis Colorectal Cancer	1	CTD_human
Hgene	CD44	C1565662	Acute Kidney Insufficiency	1	CTD_human
Hgene	CD44	C1708349	Hereditary Diffuse Gastric Cancer	1	CTD_human
Hgene	CD44	C1879321	Acute Myeloid Leukemia (AML-M2)	1	CTD_human
Hgene	CD44	C2609414	Acute kidney injury	1	CTD_human
Hgene	CD44	C2713442	Polyposis, Adenomatous Intestinal	1	CTD_human
Hgene	CD44	C2713443	Familial Intestinal Polyposis	1	CTD_human
Hgene	CD44	C4552100	Lynch Syndrome	1	CTD_human
Tgene	CD44	C0023487	Acute Promyelocytic Leukemia	2	CTD_human
Tgene	CD44	C0009405	Hereditary Nonpolyposis Colorectal Neoplasms	1	CTD_human
Tgene	CD44	C0011616	Contact Dermatitis	1	CTD_human
Tgene	CD44	C0017661	IGA Glomerulonephritis	1	CTD_human
Tgene	CD44	C0022660	Kidney Failure, Acute	1	CTD_human
Tgene	CD44	C0023467	Leukemia, Myelocytic, Acute	1	CTD_human
Tgene	CD44	C0024623	Malignant neoplasm of stomach	1	CTD_human
Tgene	CD44	C0024668	Mammary Neoplasms, Experimental	1	CTD_human
Tgene	CD44	C0026998	Acute Myeloid Leukemia, M1	1	CTD_human
Tgene	CD44	C0027627	Neoplasm Metastasis	1	CTD_human
Tgene	CD44	C0027746	Nerve Degeneration	1	CTD_human
Tgene	CD44	C0030297	Pancreatic Neoplasm	1	CTD_human
Tgene	CD44	C0032580	Adenomatous Polyposis Coli	1	CTD_human
Tgene	CD44	C0037274	Dermatologic disorders	1	CTD_human
Tgene	CD44	C0038356	Stomach Neoplasms	1	CTD_human
Tgene	CD44	C0042900	Vitiligo	1	CTD_human
Tgene	CD44	C0162351	Contact hypersensitivity	1	CTD_human
Tgene	CD44	C0274861	Arsenic Poisoning, Inorganic	1	CTD_human
Tgene	CD44	C0274862	Nervous System, Organic Arsenic Poisoning	1	CTD_human
Tgene	CD44	C0311375	Arsenic Poisoning	1	CTD_human
Tgene	CD44	C0346647	Malignant neoplasm of pancreas	1	CTD_human
Tgene	CD44	C0751851	Arsenic Encephalopathy	1	CTD_human
Tgene	CD44	C0751852	Arsenic Induced Polyneuropathy	1	CTD_human
Tgene	CD44	C1333990	Hereditary Nonpolyposis Colorectal Cancer	1	CTD_human
Tgene	CD44	C1565662	Acute Kidney Insufficiency	1	CTD_human
Tgene	CD44	C1708349	Hereditary Diffuse Gastric Cancer	1	CTD_human
Tgene	CD44	C1879321	Acute Myeloid Leukemia (AML-M2)	1	CTD_human
Tgene	CD44	C2609414	Acute kidney injury	1	CTD_human
Tgene	CD44	C2713442	Polyposis, Adenomatous Intestinal	1	CTD_human
Tgene	CD44	C2713443	Familial Intestinal Polyposis	1	CTD_human
Tgene	CD44	C4552100	Lynch Syndrome	1	CTD_human