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Fusion Gene Summary | |
Fusion Gene ORF analysis | |
Fusion Genomic Features | |
Fusion Protein Features | |
Fusion Gene Sequence | |
Fusion Gene PPI analysis | |
Related Drugs | |
Related Diseases |
Fusion gene:CDC27-C17orf53 (FusionGDB2 ID:14839) |
Fusion Gene Summary for CDC27-C17orf53 |
Fusion gene summary |
Fusion gene information | Fusion gene name: CDC27-C17orf53 | Fusion gene ID: 14839 | Hgene | Tgene | Gene symbol | CDC27 | C17orf53 | Gene ID | 996 | 78995 |
Gene name | cell division cycle 27 | homologous recombination factor with OB-fold | |
Synonyms | ANAPC3|APC3|CDC27Hs|D0S1430E|D17S978E|H-NUC|HNUC|NUC2 | C17orf53|MCM8IP | |
Cytomap | 17q21.32 | 17q21.31 | |
Type of gene | protein-coding | protein-coding | |
Description | cell division cycle protein 27 homologD0S1430E, D17S978Eanaphase promoting complex subunit 3anaphase-promoting complex, protein 3cell division cycle 27 homolognuc2 homolog | uncharacterized protein C17orf53MCM8-9-Interacting Protein)homologous recombincation factor with OB-fold | |
Modification date | 20200313 | 20200313 | |
UniProtAcc | P30260 | . | |
Ensembl transtripts involved in fusion gene | ENST00000066544, ENST00000531206, ENST00000446365, ENST00000527547, ENST00000528748, | ENST00000319977, ENST00000585683, ENST00000245382, | |
Fusion gene scores | * DoF score | 12 X 8 X 10=960 | 2 X 2 X 2=8 |
# samples | 16 | 2 | |
** MAII score | log2(16/960*10)=-2.58496250072116 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(2/8*10)=1.32192809488736 | |
Context | PubMed: CDC27 [Title/Abstract] AND C17orf53 [Title/Abstract] AND fusion [Title/Abstract] | ||
Most frequent breakpoint | CDC27(45219219)-C17orf53(42231924), # samples:2 | ||
Anticipated loss of major functional domain due to fusion event. | CDC27-C17orf53 seems lost the major protein functional domain in Hgene partner, which is a essential gene due to the frame-shifted ORF. CDC27-C17orf53 seems lost the major protein functional domain in Tgene partner, which is a essential gene due to the frame-shifted ORF. |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
Partner | Gene | GO ID | GO term | PubMed ID |
Hgene | CDC27 | GO:0070979 | protein K11-linked ubiquitination | 18485873 |
Fusion gene breakpoints across CDC27 (5'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
Fusion gene breakpoints across C17orf53 (3'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Source | Disease | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
ChimerDB4 | CESC | TCGA-4J-AA1J-01A | CDC27 | chr17 | 45219219 | - | C17orf53 | chr17 | 42231924 | + |
ChimerDB4 | CESC | TCGA-4J-AA1J-01A | CDC27 | chr17 | 45219219 | - | C17orf53 | chr17 | 42231924 | + |
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Fusion Gene ORF analysis for CDC27-C17orf53 |
Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
In-frame | ENST00000066544 | ENST00000319977 | CDC27 | chr17 | 45219219 | - | C17orf53 | chr17 | 42231924 | + |
In-frame | ENST00000066544 | ENST00000585683 | CDC27 | chr17 | 45219219 | - | C17orf53 | chr17 | 42231924 | + |
In-frame | ENST00000066544 | ENST00000245382 | CDC27 | chr17 | 45219219 | - | C17orf53 | chr17 | 42231924 | + |
In-frame | ENST00000531206 | ENST00000319977 | CDC27 | chr17 | 45219219 | - | C17orf53 | chr17 | 42231924 | + |
In-frame | ENST00000531206 | ENST00000585683 | CDC27 | chr17 | 45219219 | - | C17orf53 | chr17 | 42231924 | + |
In-frame | ENST00000531206 | ENST00000245382 | CDC27 | chr17 | 45219219 | - | C17orf53 | chr17 | 42231924 | + |
Frame-shift | ENST00000446365 | ENST00000319977 | CDC27 | chr17 | 45219219 | - | C17orf53 | chr17 | 42231924 | + |
Frame-shift | ENST00000446365 | ENST00000585683 | CDC27 | chr17 | 45219219 | - | C17orf53 | chr17 | 42231924 | + |
Frame-shift | ENST00000446365 | ENST00000245382 | CDC27 | chr17 | 45219219 | - | C17orf53 | chr17 | 42231924 | + |
In-frame | ENST00000527547 | ENST00000319977 | CDC27 | chr17 | 45219219 | - | C17orf53 | chr17 | 42231924 | + |
In-frame | ENST00000527547 | ENST00000585683 | CDC27 | chr17 | 45219219 | - | C17orf53 | chr17 | 42231924 | + |
In-frame | ENST00000527547 | ENST00000245382 | CDC27 | chr17 | 45219219 | - | C17orf53 | chr17 | 42231924 | + |
intron-3CDS | ENST00000528748 | ENST00000319977 | CDC27 | chr17 | 45219219 | - | C17orf53 | chr17 | 42231924 | + |
intron-3CDS | ENST00000528748 | ENST00000585683 | CDC27 | chr17 | 45219219 | - | C17orf53 | chr17 | 42231924 | + |
intron-3CDS | ENST00000528748 | ENST00000245382 | CDC27 | chr17 | 45219219 | - | C17orf53 | chr17 | 42231924 | + |
ORFfinder result based on the fusion transcript sequence of in-frame fusion genes. |
Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | Seq length (transcript) | BP loci (transcript) | Predicted start (transcript) | Predicted stop (transcript) | Seq length (amino acids) |
ENST00000066544 | CDC27 | chr17 | 45219219 | - | ENST00000319977 | C17orf53 | chr17 | 42231924 | + | 2684 | 1645 | 94 | 2139 | 681 |
ENST00000066544 | CDC27 | chr17 | 45219219 | - | ENST00000585683 | C17orf53 | chr17 | 42231924 | + | 2490 | 1645 | 94 | 2136 | 680 |
ENST00000066544 | CDC27 | chr17 | 45219219 | - | ENST00000245382 | C17orf53 | chr17 | 42231924 | + | 2572 | 1645 | 94 | 1986 | 630 |
ENST00000531206 | CDC27 | chr17 | 45219219 | - | ENST00000319977 | C17orf53 | chr17 | 42231924 | + | 2612 | 1573 | 4 | 2067 | 687 |
ENST00000531206 | CDC27 | chr17 | 45219219 | - | ENST00000585683 | C17orf53 | chr17 | 42231924 | + | 2418 | 1573 | 4 | 2064 | 686 |
ENST00000531206 | CDC27 | chr17 | 45219219 | - | ENST00000245382 | C17orf53 | chr17 | 42231924 | + | 2500 | 1573 | 4 | 1914 | 636 |
ENST00000527547 | CDC27 | chr17 | 45219219 | - | ENST00000319977 | C17orf53 | chr17 | 42231924 | + | 2639 | 1600 | 52 | 2094 | 680 |
ENST00000527547 | CDC27 | chr17 | 45219219 | - | ENST00000585683 | C17orf53 | chr17 | 42231924 | + | 2445 | 1600 | 52 | 2091 | 679 |
ENST00000527547 | CDC27 | chr17 | 45219219 | - | ENST00000245382 | C17orf53 | chr17 | 42231924 | + | 2527 | 1600 | 52 | 1941 | 629 |
DeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated. |
Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | No-coding score | Coding score |
ENST00000066544 | ENST00000319977 | CDC27 | chr17 | 45219219 | - | C17orf53 | chr17 | 42231924 | + | 0.001300819 | 0.9986992 |
ENST00000066544 | ENST00000585683 | CDC27 | chr17 | 45219219 | - | C17orf53 | chr17 | 42231924 | + | 0.001140754 | 0.9988593 |
ENST00000066544 | ENST00000245382 | CDC27 | chr17 | 45219219 | - | C17orf53 | chr17 | 42231924 | + | 0.001570288 | 0.9984297 |
ENST00000531206 | ENST00000319977 | CDC27 | chr17 | 45219219 | - | C17orf53 | chr17 | 42231924 | + | 0.001080695 | 0.99891937 |
ENST00000531206 | ENST00000585683 | CDC27 | chr17 | 45219219 | - | C17orf53 | chr17 | 42231924 | + | 0.000982807 | 0.99901724 |
ENST00000531206 | ENST00000245382 | CDC27 | chr17 | 45219219 | - | C17orf53 | chr17 | 42231924 | + | 0.00147377 | 0.9985262 |
ENST00000527547 | ENST00000319977 | CDC27 | chr17 | 45219219 | - | C17orf53 | chr17 | 42231924 | + | 0.001264385 | 0.9987356 |
ENST00000527547 | ENST00000585683 | CDC27 | chr17 | 45219219 | - | C17orf53 | chr17 | 42231924 | + | 0.001254738 | 0.9987452 |
ENST00000527547 | ENST00000245382 | CDC27 | chr17 | 45219219 | - | C17orf53 | chr17 | 42231924 | + | 0.00171154 | 0.99828845 |
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Fusion Genomic Features for CDC27-C17orf53 |
FusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints. |
Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | 1-p | p (fusion gene breakpoint) |
CDC27 | chr17 | 45219218 | - | C17orf53 | chr17 | 42231923 | + | 7.89E-08 | 0.9999999 |
CDC27 | chr17 | 45219218 | - | C17orf53 | chr17 | 42231923 | + | 7.89E-08 | 0.9999999 |
Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page. |
Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page. |
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Fusion Protein Features for CDC27-C17orf53 |
Go to FGviewer for the breakpoints of chr17:45219219-chr17:42231924 - FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels. |
Main function of each fusion partner protein. (from UniProt) |
Hgene | Tgene |
CDC27 | . |
FUNCTION: Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin ligase that controls progression through mitosis and the G1 phase of the cell cycle. The APC/C complex acts by mediating ubiquitination and subsequent degradation of target proteins: it mainly mediates the formation of 'Lys-11'-linked polyubiquitin chains and, to a lower extent, the formation of 'Lys-48'- and 'Lys-63'-linked polyubiquitin chains. {ECO:0000269|PubMed:18485873}. | FUNCTION: Might normally function as a transcriptional repressor. EWS-fusion-proteins (EFPS) may play a role in the tumorigenic process. They may disturb gene expression by mimicking, or interfering with the normal function of CTD-POLII within the transcription initiation complex. They may also contribute to an aberrant activation of the fusion protein target genes. |
Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | CDC27 | chr17:45219219 | chr17:42231924 | ENST00000066544 | - | 12 | 19 | 115_145 | 517.0 | 825.0 | Repeat | Note=TPR 4 |
Hgene | CDC27 | chr17:45219219 | chr17:42231924 | ENST00000066544 | - | 12 | 19 | 38_65 | 517.0 | 825.0 | Repeat | Note=TPR 2 |
Hgene | CDC27 | chr17:45219219 | chr17:42231924 | ENST00000066544 | - | 12 | 19 | 465_495 | 517.0 | 825.0 | Repeat | Note=TPR 5 |
Hgene | CDC27 | chr17:45219219 | chr17:42231924 | ENST00000066544 | - | 12 | 19 | 67_99 | 517.0 | 825.0 | Repeat | Note=TPR 3 |
Hgene | CDC27 | chr17:45219219 | chr17:42231924 | ENST00000066544 | - | 12 | 19 | 6_35 | 517.0 | 825.0 | Repeat | Note=TPR 1 |
Hgene | CDC27 | chr17:45219219 | chr17:42231924 | ENST00000531206 | - | 12 | 19 | 115_145 | 523.0 | 831.0 | Repeat | Note=TPR 4 |
Hgene | CDC27 | chr17:45219219 | chr17:42231924 | ENST00000531206 | - | 12 | 19 | 38_65 | 523.0 | 831.0 | Repeat | Note=TPR 2 |
Hgene | CDC27 | chr17:45219219 | chr17:42231924 | ENST00000531206 | - | 12 | 19 | 465_495 | 523.0 | 831.0 | Repeat | Note=TPR 5 |
Hgene | CDC27 | chr17:45219219 | chr17:42231924 | ENST00000531206 | - | 12 | 19 | 67_99 | 523.0 | 831.0 | Repeat | Note=TPR 3 |
Hgene | CDC27 | chr17:45219219 | chr17:42231924 | ENST00000531206 | - | 12 | 19 | 6_35 | 523.0 | 831.0 | Repeat | Note=TPR 1 |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | CDC27 | chr17:45219219 | chr17:42231924 | ENST00000066544 | - | 12 | 19 | 499_528 | 517.0 | 825.0 | Repeat | Note=TPR 6 |
Hgene | CDC27 | chr17:45219219 | chr17:42231924 | ENST00000066544 | - | 12 | 19 | 533_563 | 517.0 | 825.0 | Repeat | Note=TPR 7 |
Hgene | CDC27 | chr17:45219219 | chr17:42231924 | ENST00000066544 | - | 12 | 19 | 567_598 | 517.0 | 825.0 | Repeat | Note=TPR 8 |
Hgene | CDC27 | chr17:45219219 | chr17:42231924 | ENST00000066544 | - | 12 | 19 | 601_631 | 517.0 | 825.0 | Repeat | Note=TPR 9 |
Hgene | CDC27 | chr17:45219219 | chr17:42231924 | ENST00000066544 | - | 12 | 19 | 635_667 | 517.0 | 825.0 | Repeat | Note=TPR 10 |
Hgene | CDC27 | chr17:45219219 | chr17:42231924 | ENST00000066544 | - | 12 | 19 | 670_702 | 517.0 | 825.0 | Repeat | Note=TPR 11 |
Hgene | CDC27 | chr17:45219219 | chr17:42231924 | ENST00000066544 | - | 12 | 19 | 704_734 | 517.0 | 825.0 | Repeat | Note=TPR 12 |
Hgene | CDC27 | chr17:45219219 | chr17:42231924 | ENST00000066544 | - | 12 | 19 | 737_768 | 517.0 | 825.0 | Repeat | Note=TPR 13 |
Hgene | CDC27 | chr17:45219219 | chr17:42231924 | ENST00000531206 | - | 12 | 19 | 499_528 | 523.0 | 831.0 | Repeat | Note=TPR 6 |
Hgene | CDC27 | chr17:45219219 | chr17:42231924 | ENST00000531206 | - | 12 | 19 | 533_563 | 523.0 | 831.0 | Repeat | Note=TPR 7 |
Hgene | CDC27 | chr17:45219219 | chr17:42231924 | ENST00000531206 | - | 12 | 19 | 567_598 | 523.0 | 831.0 | Repeat | Note=TPR 8 |
Hgene | CDC27 | chr17:45219219 | chr17:42231924 | ENST00000531206 | - | 12 | 19 | 601_631 | 523.0 | 831.0 | Repeat | Note=TPR 9 |
Hgene | CDC27 | chr17:45219219 | chr17:42231924 | ENST00000531206 | - | 12 | 19 | 635_667 | 523.0 | 831.0 | Repeat | Note=TPR 10 |
Hgene | CDC27 | chr17:45219219 | chr17:42231924 | ENST00000531206 | - | 12 | 19 | 670_702 | 523.0 | 831.0 | Repeat | Note=TPR 11 |
Hgene | CDC27 | chr17:45219219 | chr17:42231924 | ENST00000531206 | - | 12 | 19 | 704_734 | 523.0 | 831.0 | Repeat | Note=TPR 12 |
Hgene | CDC27 | chr17:45219219 | chr17:42231924 | ENST00000531206 | - | 12 | 19 | 737_768 | 523.0 | 831.0 | Repeat | Note=TPR 13 |
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Fusion Gene Sequence for CDC27-C17orf53 |
For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones. |
>In-frame_ENST00000066544_ENST00000319977_TCGA-4J-AA1J-01A_CDC27_chr17_45219219_-_C17orf53_chr17_42231924_length(transcript)=2684nt_BP=1645nt TCGCTGGTGAGTTTAAATGAGCAGGGGCTGGCCGGGCCGGAGCCGCTACAGGGGGGGCCTGAGGCACTGCAGAAAGTGGGCCTGAGCCTC GAGGATGACGGTGCTGCAGGAACCCGTCCAGGCTGCTATATGGCAAGCACTAAACCACTATGCTTACCGAGATGCGGTTTTCCTCGCAGA ACGCCTTTATGCAGAAGTACACTCAGAAGAAGCCTTGTTTTTACTGGCAACCTGTTATTACCGCTCAGGAAAGGCATATAAAGCATATAG ACTCTTGAAAGGACACAGTTGTACTACACCGCAATGCAAATACCTGCTTGCAAAATGTTGTGTTGATCTCAGCAAGCTTGCAGAAGGGGA ACAAATCTTATCTGGTGGAGTGTTTAATAAGCAGAAAAGCCATGATGATATTGTTACTGAGTTTGGTGATTCAGCTTGCTTTACTCTTTC ATTGTTGGGACATGTATATTGCAAGACAGATCGGCTTGCCAAAGGATCAGAATGTTACCAAAAGAGCCTTAGTTTAAATCCTTTCCTCTG GTCTCCCTTTGAATCATTATGTGAAATAGGTGAAAAGCCAGATCCTGACCAAACATTTAAATTCACATCTTTACAGAACTTTAGCAACTG TCTGCCCAACTCTTGCACAACACAAGTACCTAATCATAGTTTATCTCACAGACAGCCTGAGACAGTTCTTACGGAAACACCCCAGGACAC AATTGAATTAAACAGATTGAATTTAGAATCTTCCAATTCAAAGTACTCCTTGAATACAGATTCCTCAGTGTCTTATATTGATTCAGCTGT AATTTCACCTGATACTGTCCCACTGGGAACAGGAACTTCCATATTATCTAAACAGGTTCAAAATAAACCAAAAACTGGTCGAAGTTTATT AGGAGGACCAGCAGCTCTTAGTCCATTAACCCCAAGTTTTGGGATTTTGCCATTAGAAACCCCAAGTCCTGGAGATGGATCCTATTTACA AAACTACACTAATACACCTCCTGTAATTGATGTGCCATCCACCGGAGCCCCTTCAAAAAAGTCTGTTGCCAGAATCGGCCAAACTGGAAC AAAGTCTGTCTTCTCACAGAGTGGAAATAGCCGAGAGGTAACTCCAATTCTTGCACAAACACAAAGTTCTGGTCCACAAACAAGTACAAC ACCTCAGGTATTGAGCCCCACTATTACATCTCCCCCAAACGCACTGCCTCGAAGAAGTTCACGACTCTTTACTAGTGACAGCTCCACAAC CAAGGAGAATAGCAAAAAATTAAAAATGAAGTTTCCACCTAAAATCCCAAACAGAAAAACAAAAAGTAAAACTAATAAAGGAGGAATAAC TCAACCTAACATAAATGATAGCCTGGAAATTACAAAATTGGACTCTTCCATCATTTCAGAAGGGAAAATATCCACAATCACACCTCAGAT TCAGGCCTTTAATCTACAAAAAGCAGCAGCAGAAGGTTTGATGAGCCTTCTTCGTGAAATGGGGAAAGGTTATTTAGCTTTGTGTTCATA CAACTGCAAAGAAGCTATAAATATTTTGAGCCATCTACCTTCTCACCACTACAATACTGGTTGGGTACTGTGCCAAATTGGAAGGGCCTA TTTTGAACTTTCAGAGTACATGCAACAGGCAGCCCTGAAGCAGCTTCCTAGGAACAAGGTCCCCAACATGGCGGTGATGATCAAGTCCCT GACTCGGAGCACAATGGACGCCAGTGTGGTTTTCAAGGACCCCACGGGAGAGATGCAGGGGACGGTGCACAGGTTGCTGCTGGAGACGTG CCAGAATGAGCTGAAGCCTGGCTCAGTGCTGCTGCTGAAGCAGATTGGAGTGTTTTCTCCTTCACTTCGAAATCACTACCTCAACGTGAC ACCCAACAACCTGGTCCATATTTACAGCCCGGATTCTGGGGATGGGAGCTTCCTCAAGCCATCTCAGCCCTTCCCCAAGGATTCAGGGAG CTTCCAGCATGATGTGGCTGCAAAGCCCGAGGAAGGCTTCAGAACAGCACAGAACCTAGAGGCAGAGGCGTCCCCTGAGGAAGAACTCCC AGAAGCAGATGACCTGGATGGACTCCTGAGTGAGCTTCCTGAAGACTTCTTCTGTGGGACCAGTAGTTGAGACTGCCCCAACGCAGGACA ACCCACCATGAGCAGGCAGCTCTGGGCATGTGTCTGGTCACATCCAAGGGGGAGAAGAAGGCCAGCATGATTGGAGAGTGGACACAGCCG GGGGGCTTCTGTGGTTGCTCCCACCCTGGGTGTTTTCCCTGAGAGCCCCCTCATCTCTGCGCTGCCCTCACTTTGGGCCTTCCTTTGCCG TTGGCACCAGAATCCGGCCGGAGACTGGCTCTCCAGCCAACAAGAAAGGCCTGTCACCCTCGCCTTGGGTGTCCCTCTCCTGCCTCAGCT TAATTTTAGAGGATATTGGGCCTGGTTTTCTTGTCCCTTCATACCCTAGTCCCTGGACAGCTGAGGAGATGAAAGGAGCCACACCACAAC AATGGCGGCCTGCCCCTCCACACAGGGGAGAAGCACGCTCAGGCTTCCTCTGCTTTGTCTCTTCAGACCTGTGGTTGCTCTGCTCATCCA >In-frame_ENST00000066544_ENST00000319977_TCGA-4J-AA1J-01A_CDC27_chr17_45219219_-_C17orf53_chr17_42231924_length(amino acids)=681AA_start in transcript=94_stop in transcript=2139 MTVLQEPVQAAIWQALNHYAYRDAVFLAERLYAEVHSEEALFLLATCYYRSGKAYKAYRLLKGHSCTTPQCKYLLAKCCVDLSKLAEGEQ ILSGGVFNKQKSHDDIVTEFGDSACFTLSLLGHVYCKTDRLAKGSECYQKSLSLNPFLWSPFESLCEIGEKPDPDQTFKFTSLQNFSNCL PNSCTTQVPNHSLSHRQPETVLTETPQDTIELNRLNLESSNSKYSLNTDSSVSYIDSAVISPDTVPLGTGTSILSKQVQNKPKTGRSLLG GPAALSPLTPSFGILPLETPSPGDGSYLQNYTNTPPVIDVPSTGAPSKKSVARIGQTGTKSVFSQSGNSREVTPILAQTQSSGPQTSTTP QVLSPTITSPPNALPRRSSRLFTSDSSTTKENSKKLKMKFPPKIPNRKTKSKTNKGGITQPNINDSLEITKLDSSIISEGKISTITPQIQ AFNLQKAAAEGLMSLLREMGKGYLALCSYNCKEAINILSHLPSHHYNTGWVLCQIGRAYFELSEYMQQAALKQLPRNKVPNMAVMIKSLT RSTMDASVVFKDPTGEMQGTVHRLLLETCQNELKPGSVLLLKQIGVFSPSLRNHYLNVTPNNLVHIYSPDSGDGSFLKPSQPFPKDSGSF -------------------------------------------------------------- >In-frame_ENST00000066544_ENST00000585683_TCGA-4J-AA1J-01A_CDC27_chr17_45219219_-_C17orf53_chr17_42231924_length(transcript)=2490nt_BP=1645nt TCGCTGGTGAGTTTAAATGAGCAGGGGCTGGCCGGGCCGGAGCCGCTACAGGGGGGGCCTGAGGCACTGCAGAAAGTGGGCCTGAGCCTC GAGGATGACGGTGCTGCAGGAACCCGTCCAGGCTGCTATATGGCAAGCACTAAACCACTATGCTTACCGAGATGCGGTTTTCCTCGCAGA ACGCCTTTATGCAGAAGTACACTCAGAAGAAGCCTTGTTTTTACTGGCAACCTGTTATTACCGCTCAGGAAAGGCATATAAAGCATATAG ACTCTTGAAAGGACACAGTTGTACTACACCGCAATGCAAATACCTGCTTGCAAAATGTTGTGTTGATCTCAGCAAGCTTGCAGAAGGGGA ACAAATCTTATCTGGTGGAGTGTTTAATAAGCAGAAAAGCCATGATGATATTGTTACTGAGTTTGGTGATTCAGCTTGCTTTACTCTTTC ATTGTTGGGACATGTATATTGCAAGACAGATCGGCTTGCCAAAGGATCAGAATGTTACCAAAAGAGCCTTAGTTTAAATCCTTTCCTCTG GTCTCCCTTTGAATCATTATGTGAAATAGGTGAAAAGCCAGATCCTGACCAAACATTTAAATTCACATCTTTACAGAACTTTAGCAACTG TCTGCCCAACTCTTGCACAACACAAGTACCTAATCATAGTTTATCTCACAGACAGCCTGAGACAGTTCTTACGGAAACACCCCAGGACAC AATTGAATTAAACAGATTGAATTTAGAATCTTCCAATTCAAAGTACTCCTTGAATACAGATTCCTCAGTGTCTTATATTGATTCAGCTGT AATTTCACCTGATACTGTCCCACTGGGAACAGGAACTTCCATATTATCTAAACAGGTTCAAAATAAACCAAAAACTGGTCGAAGTTTATT AGGAGGACCAGCAGCTCTTAGTCCATTAACCCCAAGTTTTGGGATTTTGCCATTAGAAACCCCAAGTCCTGGAGATGGATCCTATTTACA AAACTACACTAATACACCTCCTGTAATTGATGTGCCATCCACCGGAGCCCCTTCAAAAAAGTCTGTTGCCAGAATCGGCCAAACTGGAAC AAAGTCTGTCTTCTCACAGAGTGGAAATAGCCGAGAGGTAACTCCAATTCTTGCACAAACACAAAGTTCTGGTCCACAAACAAGTACAAC ACCTCAGGTATTGAGCCCCACTATTACATCTCCCCCAAACGCACTGCCTCGAAGAAGTTCACGACTCTTTACTAGTGACAGCTCCACAAC CAAGGAGAATAGCAAAAAATTAAAAATGAAGTTTCCACCTAAAATCCCAAACAGAAAAACAAAAAGTAAAACTAATAAAGGAGGAATAAC TCAACCTAACATAAATGATAGCCTGGAAATTACAAAATTGGACTCTTCCATCATTTCAGAAGGGAAAATATCCACAATCACACCTCAGAT TCAGGCCTTTAATCTACAAAAAGCAGCAGCAGAAGGTTTGATGAGCCTTCTTCGTGAAATGGGGAAAGGTTATTTAGCTTTGTGTTCATA CAACTGCAAAGAAGCTATAAATATTTTGAGCCATCTACCTTCTCACCACTACAATACTGGTTGGGTACTGTGCCAAATTGGAAGGGCCTA TTTTGAACTTTCAGAGTACATGCAAGCAGCCCTGAAGCAGCTTCCTAGGAACAAGGTCCCCAACATGGCGGTGATGATCAAGTCCCTGAC TCGGAGCACAATGGACGCCAGTGTGGTTTTCAAGGACCCCACGGGAGAGATGCAGGGGACGGTGCACAGGTTGCTGCTGGAGACGTGCCA GAATGAGCTGAAGCCTGGCTCAGTGCTGCTGCTGAAGCAGATTGGAGTGTTTTCTCCTTCACTTCGAAATCACTACCTCAACGTGACACC CAACAACCTGGTCCATATTTACAGCCCGGATTCTGGGGATGGGAGCTTCCTCAAGCCATCTCAGCCCTTCCCCAAGGATTCAGGGAGCTT CCAGCATGATGTGGCTGCAAAGCCCGAGGAAGGCTTCAGAACAGCACAGAACCTAGAGGCAGAGGCGTCCCCTGAGGAAGAACTCCCAGA AGCAGATGACCTGGATGGACTCCTGAGTGAGCTTCCTGAAGACTTCTTCTGTGGGACCAGTAGTTGAGACTGCCCCAACGCAGGACAACC CACCATGAGCAGGCAGCTCTGGGCATGTGTCTGGTCACATCCAAGGGGGAGAAGAAGGCCAGCATGATTGGAGAGTGGACACAGCCGGGG GGCTTCTGTGGTTGCTCCCACCCTGGGTGTTTTCCCTGAGAGCCCCCTCATCTCTGCGCTGCCCTCACTTTGGGCCTTCCTTTGCCGTTG GCACCAGAATCCGGCCGGAGACTGGCTCTCCAGCCAACAAGAAAGGCCTGTCACCCTCGCCTTGGGTGTCCCTCTCCTGCCTCAGCTTAA >In-frame_ENST00000066544_ENST00000585683_TCGA-4J-AA1J-01A_CDC27_chr17_45219219_-_C17orf53_chr17_42231924_length(amino acids)=680AA_start in transcript=94_stop in transcript=2136 MTVLQEPVQAAIWQALNHYAYRDAVFLAERLYAEVHSEEALFLLATCYYRSGKAYKAYRLLKGHSCTTPQCKYLLAKCCVDLSKLAEGEQ ILSGGVFNKQKSHDDIVTEFGDSACFTLSLLGHVYCKTDRLAKGSECYQKSLSLNPFLWSPFESLCEIGEKPDPDQTFKFTSLQNFSNCL PNSCTTQVPNHSLSHRQPETVLTETPQDTIELNRLNLESSNSKYSLNTDSSVSYIDSAVISPDTVPLGTGTSILSKQVQNKPKTGRSLLG GPAALSPLTPSFGILPLETPSPGDGSYLQNYTNTPPVIDVPSTGAPSKKSVARIGQTGTKSVFSQSGNSREVTPILAQTQSSGPQTSTTP QVLSPTITSPPNALPRRSSRLFTSDSSTTKENSKKLKMKFPPKIPNRKTKSKTNKGGITQPNINDSLEITKLDSSIISEGKISTITPQIQ AFNLQKAAAEGLMSLLREMGKGYLALCSYNCKEAINILSHLPSHHYNTGWVLCQIGRAYFELSEYMQAALKQLPRNKVPNMAVMIKSLTR STMDASVVFKDPTGEMQGTVHRLLLETCQNELKPGSVLLLKQIGVFSPSLRNHYLNVTPNNLVHIYSPDSGDGSFLKPSQPFPKDSGSFQ -------------------------------------------------------------- >In-frame_ENST00000066544_ENST00000245382_TCGA-4J-AA1J-01A_CDC27_chr17_45219219_-_C17orf53_chr17_42231924_length(transcript)=2572nt_BP=1645nt TCGCTGGTGAGTTTAAATGAGCAGGGGCTGGCCGGGCCGGAGCCGCTACAGGGGGGGCCTGAGGCACTGCAGAAAGTGGGCCTGAGCCTC GAGGATGACGGTGCTGCAGGAACCCGTCCAGGCTGCTATATGGCAAGCACTAAACCACTATGCTTACCGAGATGCGGTTTTCCTCGCAGA ACGCCTTTATGCAGAAGTACACTCAGAAGAAGCCTTGTTTTTACTGGCAACCTGTTATTACCGCTCAGGAAAGGCATATAAAGCATATAG ACTCTTGAAAGGACACAGTTGTACTACACCGCAATGCAAATACCTGCTTGCAAAATGTTGTGTTGATCTCAGCAAGCTTGCAGAAGGGGA ACAAATCTTATCTGGTGGAGTGTTTAATAAGCAGAAAAGCCATGATGATATTGTTACTGAGTTTGGTGATTCAGCTTGCTTTACTCTTTC ATTGTTGGGACATGTATATTGCAAGACAGATCGGCTTGCCAAAGGATCAGAATGTTACCAAAAGAGCCTTAGTTTAAATCCTTTCCTCTG GTCTCCCTTTGAATCATTATGTGAAATAGGTGAAAAGCCAGATCCTGACCAAACATTTAAATTCACATCTTTACAGAACTTTAGCAACTG TCTGCCCAACTCTTGCACAACACAAGTACCTAATCATAGTTTATCTCACAGACAGCCTGAGACAGTTCTTACGGAAACACCCCAGGACAC AATTGAATTAAACAGATTGAATTTAGAATCTTCCAATTCAAAGTACTCCTTGAATACAGATTCCTCAGTGTCTTATATTGATTCAGCTGT AATTTCACCTGATACTGTCCCACTGGGAACAGGAACTTCCATATTATCTAAACAGGTTCAAAATAAACCAAAAACTGGTCGAAGTTTATT AGGAGGACCAGCAGCTCTTAGTCCATTAACCCCAAGTTTTGGGATTTTGCCATTAGAAACCCCAAGTCCTGGAGATGGATCCTATTTACA AAACTACACTAATACACCTCCTGTAATTGATGTGCCATCCACCGGAGCCCCTTCAAAAAAGTCTGTTGCCAGAATCGGCCAAACTGGAAC AAAGTCTGTCTTCTCACAGAGTGGAAATAGCCGAGAGGTAACTCCAATTCTTGCACAAACACAAAGTTCTGGTCCACAAACAAGTACAAC ACCTCAGGTATTGAGCCCCACTATTACATCTCCCCCAAACGCACTGCCTCGAAGAAGTTCACGACTCTTTACTAGTGACAGCTCCACAAC CAAGGAGAATAGCAAAAAATTAAAAATGAAGTTTCCACCTAAAATCCCAAACAGAAAAACAAAAAGTAAAACTAATAAAGGAGGAATAAC TCAACCTAACATAAATGATAGCCTGGAAATTACAAAATTGGACTCTTCCATCATTTCAGAAGGGAAAATATCCACAATCACACCTCAGAT TCAGGCCTTTAATCTACAAAAAGCAGCAGCAGAAGGTTTGATGAGCCTTCTTCGTGAAATGGGGAAAGGTTATTTAGCTTTGTGTTCATA CAACTGCAAAGAAGCTATAAATATTTTGAGCCATCTACCTTCTCACCACTACAATACTGGTTGGGTACTGTGCCAAATTGGAAGGGCCTA TTTTGAACTTTCAGAGTACATGCAAGCAGCCCTGAAGCAGCTTCCTAGGAACAAGGTCCCCAACATGGCGGTGATGATCAAGTCCCTGAC TCGGAGCACAATGGACGCCAGTGTGGTTTTCAAGGACCCCACGGGAGAGATGCAGGGGACGGTGCACAGGTTGCTGCTGGAGACGTGCCA GAATGAGCTGAAGCCTGGCTCAGTGCTGCTGCTGAAGCAGATTGGAGTGTTTTCTCCTTCACTTCGAAATCACTACCTCAACGTGACACC CAACAACCTGGTCCATATTTACAGCCCGGATTCTGGGGATGGGAGCTTCCTCAAGCCATCTCAGCCCTTCCCCAAGATGACCTGGATGGA CTCCTGAGTGAGCTTCCTGAAGACTTCTTCTGTGGGACCAGTAGTTGAGACTGCCCCAACGCAGGACAACCCACCATGAGCAGGCAGCTC TGGGCATGTGTCTGGTCACATCCAAGGGGGAGAAGAAGGCCAGCATGATTGGAGAGTGGACACAGCCGGGGGGCTTCTGTGGTTGCTCCC ACCCTGGGTGTTTTCCCTGAGAGCCCCCTCATCTCTGCGCTGCCCTCACTTTGGGCCTTCCTTTGCCGTTGGCACCAGAATCCGGCCGGA GACTGGCTCTCCAGCCAACAAGAAAGGCCTGTCACCCTCGCCTTGGGTGTCCCTCTCCTGCCTCAGCTTAATTTTAGAGGATATTGGGCC TGGTTTTCTTGTCCCTTCATACCCTAGTCCCTGGACAGCTGAGGAGATGAAAGGAGCCACACCACAACAATGGCGGCCTGCCCCTCCACA CAGGGGAGAAGCACGCTCAGGCTTCCTCTGCTTTGTCTCTTCAGACCTGTGGTTGCTCTGCTCATCCATGCCCAAGGTTCCCAGGTGCAG >In-frame_ENST00000066544_ENST00000245382_TCGA-4J-AA1J-01A_CDC27_chr17_45219219_-_C17orf53_chr17_42231924_length(amino acids)=630AA_start in transcript=94_stop in transcript=1986 MTVLQEPVQAAIWQALNHYAYRDAVFLAERLYAEVHSEEALFLLATCYYRSGKAYKAYRLLKGHSCTTPQCKYLLAKCCVDLSKLAEGEQ ILSGGVFNKQKSHDDIVTEFGDSACFTLSLLGHVYCKTDRLAKGSECYQKSLSLNPFLWSPFESLCEIGEKPDPDQTFKFTSLQNFSNCL PNSCTTQVPNHSLSHRQPETVLTETPQDTIELNRLNLESSNSKYSLNTDSSVSYIDSAVISPDTVPLGTGTSILSKQVQNKPKTGRSLLG GPAALSPLTPSFGILPLETPSPGDGSYLQNYTNTPPVIDVPSTGAPSKKSVARIGQTGTKSVFSQSGNSREVTPILAQTQSSGPQTSTTP QVLSPTITSPPNALPRRSSRLFTSDSSTTKENSKKLKMKFPPKIPNRKTKSKTNKGGITQPNINDSLEITKLDSSIISEGKISTITPQIQ AFNLQKAAAEGLMSLLREMGKGYLALCSYNCKEAINILSHLPSHHYNTGWVLCQIGRAYFELSEYMQAALKQLPRNKVPNMAVMIKSLTR STMDASVVFKDPTGEMQGTVHRLLLETCQNELKPGSVLLLKQIGVFSPSLRNHYLNVTPNNLVHIYSPDSGDGSFLKPSQPFPKMTWMDS -------------------------------------------------------------- >In-frame_ENST00000531206_ENST00000319977_TCGA-4J-AA1J-01A_CDC27_chr17_45219219_-_C17orf53_chr17_42231924_length(transcript)=2612nt_BP=1573nt GAGGATGACGGTGCTGCAGGAACCCGTCCAGGCTGCTATATGGCAAGCACTAAACCACTATGCTTACCGAGATGCGGTTTTCCTCGCAGA ACGCCTTTATGCAGAAGTACACTCAGAAGAAGCCTTGTTTTTACTGGCAACCTGTTATTACCGCTCAGGAAAGGCATATAAAGCATATAG ACTCTTGAAAGGACACAGTTGTACTACACCGCAATGCAAATACCTGCTTGCAAAATGTTGTGTTGATCTCAGCAAGCTTGCAGAAGGGGA ACAAATCTTATCTGGTGGAGTGTTTAATAAGCAGAAAAGCCATGATGATATTGTTACTGAGTTTGGTGATTCAGCTTGCTTTACTCTTTC ATTGTTGGGACATGTATATTGCAAGACAGATCGGCTTGCCAAAGGATCAGAATGTTACCAAAAGAGCCTTAGTTTAAATCCTTTCCTCTG GTCTCCCTTTGAATCATTATGTGAAATAGGTGAAAAGCCAGATCCTGACCAAACATTTAAATTCACATCTTTACAGAACTTTAGCAACTG TCTGCCCAACTCTTGCACAACACAAGTACCTAATCATAGTTTATCTCACAGACAGCCTGAGACAGTTCTTACGGAAACACCCCAGGACAC AATTGAATTAAACAGATTGAATTTAGAATCTTCCAATTCAAAGTACTCCTTGAATACAGATTCCTCAGTGTCTTATATTGATTCAGCTGT AATTTCACCTGATACTGTCCCACTGGGAACAGGAACTTCCATATTATCTAAACAGGTTCAAAATAAACCAAAAACTGGTCGAAGTTTATT AGGAGGACCAGCAGCTCTTAGTCCATTAACCCCAAGTTTTGGGATTTTGCCATTAGAAACCCCAAGTCCTGGAGATGGATCCTATTTACA AAACTACACTAATACACCTCCTGTAATTGATGTGCCATCCACCGGAGCCCCTTCAAAAAAGACTTTTCGTGTTTTACAGTCTGTTGCCAG AATCGGCCAAACTGGAACAAAGTCTGTCTTCTCACAGAGTGGAAATAGCCGAGAGGTAACTCCAATTCTTGCACAAACACAAAGTTCTGG TCCACAAACAAGTACAACACCTCAGGTATTGAGCCCCACTATTACATCTCCCCCAAACGCACTGCCTCGAAGAAGTTCACGACTCTTTAC TAGTGACAGCTCCACAACCAAGGAGAATAGCAAAAAATTAAAAATGAAGTTTCCACCTAAAATCCCAAACAGAAAAACAAAAAGTAAAAC TAATAAAGGAGGAATAACTCAACCTAACATAAATGATAGCCTGGAAATTACAAAATTGGACTCTTCCATCATTTCAGAAGGGAAAATATC CACAATCACACCTCAGATTCAGGCCTTTAATCTACAAAAAGCAGCAGCAGAAGGTTTGATGAGCCTTCTTCGTGAAATGGGGAAAGGTTA TTTAGCTTTGTGTTCATACAACTGCAAAGAAGCTATAAATATTTTGAGCCATCTACCTTCTCACCACTACAATACTGGTTGGGTACTGTG CCAAATTGGAAGGGCCTATTTTGAACTTTCAGAGTACATGCAACAGGCAGCCCTGAAGCAGCTTCCTAGGAACAAGGTCCCCAACATGGC GGTGATGATCAAGTCCCTGACTCGGAGCACAATGGACGCCAGTGTGGTTTTCAAGGACCCCACGGGAGAGATGCAGGGGACGGTGCACAG GTTGCTGCTGGAGACGTGCCAGAATGAGCTGAAGCCTGGCTCAGTGCTGCTGCTGAAGCAGATTGGAGTGTTTTCTCCTTCACTTCGAAA TCACTACCTCAACGTGACACCCAACAACCTGGTCCATATTTACAGCCCGGATTCTGGGGATGGGAGCTTCCTCAAGCCATCTCAGCCCTT CCCCAAGGATTCAGGGAGCTTCCAGCATGATGTGGCTGCAAAGCCCGAGGAAGGCTTCAGAACAGCACAGAACCTAGAGGCAGAGGCGTC CCCTGAGGAAGAACTCCCAGAAGCAGATGACCTGGATGGACTCCTGAGTGAGCTTCCTGAAGACTTCTTCTGTGGGACCAGTAGTTGAGA CTGCCCCAACGCAGGACAACCCACCATGAGCAGGCAGCTCTGGGCATGTGTCTGGTCACATCCAAGGGGGAGAAGAAGGCCAGCATGATT GGAGAGTGGACACAGCCGGGGGGCTTCTGTGGTTGCTCCCACCCTGGGTGTTTTCCCTGAGAGCCCCCTCATCTCTGCGCTGCCCTCACT TTGGGCCTTCCTTTGCCGTTGGCACCAGAATCCGGCCGGAGACTGGCTCTCCAGCCAACAAGAAAGGCCTGTCACCCTCGCCTTGGGTGT CCCTCTCCTGCCTCAGCTTAATTTTAGAGGATATTGGGCCTGGTTTTCTTGTCCCTTCATACCCTAGTCCCTGGACAGCTGAGGAGATGA AAGGAGCCACACCACAACAATGGCGGCCTGCCCCTCCACACAGGGGAGAAGCACGCTCAGGCTTCCTCTGCTTTGTCTCTTCAGACCTGT GGTTGCTCTGCTCATCCATGCCCAAGGTTCCCAGGTGCAGGACAGAGGTGTGGCCTATTGTACCTTGTTCTGAAATAAAGCATCTCCTGC >In-frame_ENST00000531206_ENST00000319977_TCGA-4J-AA1J-01A_CDC27_chr17_45219219_-_C17orf53_chr17_42231924_length(amino acids)=687AA_start in transcript=4_stop in transcript=2067 MTVLQEPVQAAIWQALNHYAYRDAVFLAERLYAEVHSEEALFLLATCYYRSGKAYKAYRLLKGHSCTTPQCKYLLAKCCVDLSKLAEGEQ ILSGGVFNKQKSHDDIVTEFGDSACFTLSLLGHVYCKTDRLAKGSECYQKSLSLNPFLWSPFESLCEIGEKPDPDQTFKFTSLQNFSNCL PNSCTTQVPNHSLSHRQPETVLTETPQDTIELNRLNLESSNSKYSLNTDSSVSYIDSAVISPDTVPLGTGTSILSKQVQNKPKTGRSLLG GPAALSPLTPSFGILPLETPSPGDGSYLQNYTNTPPVIDVPSTGAPSKKTFRVLQSVARIGQTGTKSVFSQSGNSREVTPILAQTQSSGP QTSTTPQVLSPTITSPPNALPRRSSRLFTSDSSTTKENSKKLKMKFPPKIPNRKTKSKTNKGGITQPNINDSLEITKLDSSIISEGKIST ITPQIQAFNLQKAAAEGLMSLLREMGKGYLALCSYNCKEAINILSHLPSHHYNTGWVLCQIGRAYFELSEYMQQAALKQLPRNKVPNMAV MIKSLTRSTMDASVVFKDPTGEMQGTVHRLLLETCQNELKPGSVLLLKQIGVFSPSLRNHYLNVTPNNLVHIYSPDSGDGSFLKPSQPFP -------------------------------------------------------------- >In-frame_ENST00000531206_ENST00000585683_TCGA-4J-AA1J-01A_CDC27_chr17_45219219_-_C17orf53_chr17_42231924_length(transcript)=2418nt_BP=1573nt GAGGATGACGGTGCTGCAGGAACCCGTCCAGGCTGCTATATGGCAAGCACTAAACCACTATGCTTACCGAGATGCGGTTTTCCTCGCAGA ACGCCTTTATGCAGAAGTACACTCAGAAGAAGCCTTGTTTTTACTGGCAACCTGTTATTACCGCTCAGGAAAGGCATATAAAGCATATAG ACTCTTGAAAGGACACAGTTGTACTACACCGCAATGCAAATACCTGCTTGCAAAATGTTGTGTTGATCTCAGCAAGCTTGCAGAAGGGGA ACAAATCTTATCTGGTGGAGTGTTTAATAAGCAGAAAAGCCATGATGATATTGTTACTGAGTTTGGTGATTCAGCTTGCTTTACTCTTTC ATTGTTGGGACATGTATATTGCAAGACAGATCGGCTTGCCAAAGGATCAGAATGTTACCAAAAGAGCCTTAGTTTAAATCCTTTCCTCTG GTCTCCCTTTGAATCATTATGTGAAATAGGTGAAAAGCCAGATCCTGACCAAACATTTAAATTCACATCTTTACAGAACTTTAGCAACTG TCTGCCCAACTCTTGCACAACACAAGTACCTAATCATAGTTTATCTCACAGACAGCCTGAGACAGTTCTTACGGAAACACCCCAGGACAC AATTGAATTAAACAGATTGAATTTAGAATCTTCCAATTCAAAGTACTCCTTGAATACAGATTCCTCAGTGTCTTATATTGATTCAGCTGT AATTTCACCTGATACTGTCCCACTGGGAACAGGAACTTCCATATTATCTAAACAGGTTCAAAATAAACCAAAAACTGGTCGAAGTTTATT AGGAGGACCAGCAGCTCTTAGTCCATTAACCCCAAGTTTTGGGATTTTGCCATTAGAAACCCCAAGTCCTGGAGATGGATCCTATTTACA AAACTACACTAATACACCTCCTGTAATTGATGTGCCATCCACCGGAGCCCCTTCAAAAAAGACTTTTCGTGTTTTACAGTCTGTTGCCAG AATCGGCCAAACTGGAACAAAGTCTGTCTTCTCACAGAGTGGAAATAGCCGAGAGGTAACTCCAATTCTTGCACAAACACAAAGTTCTGG TCCACAAACAAGTACAACACCTCAGGTATTGAGCCCCACTATTACATCTCCCCCAAACGCACTGCCTCGAAGAAGTTCACGACTCTTTAC TAGTGACAGCTCCACAACCAAGGAGAATAGCAAAAAATTAAAAATGAAGTTTCCACCTAAAATCCCAAACAGAAAAACAAAAAGTAAAAC TAATAAAGGAGGAATAACTCAACCTAACATAAATGATAGCCTGGAAATTACAAAATTGGACTCTTCCATCATTTCAGAAGGGAAAATATC CACAATCACACCTCAGATTCAGGCCTTTAATCTACAAAAAGCAGCAGCAGAAGGTTTGATGAGCCTTCTTCGTGAAATGGGGAAAGGTTA TTTAGCTTTGTGTTCATACAACTGCAAAGAAGCTATAAATATTTTGAGCCATCTACCTTCTCACCACTACAATACTGGTTGGGTACTGTG CCAAATTGGAAGGGCCTATTTTGAACTTTCAGAGTACATGCAAGCAGCCCTGAAGCAGCTTCCTAGGAACAAGGTCCCCAACATGGCGGT GATGATCAAGTCCCTGACTCGGAGCACAATGGACGCCAGTGTGGTTTTCAAGGACCCCACGGGAGAGATGCAGGGGACGGTGCACAGGTT GCTGCTGGAGACGTGCCAGAATGAGCTGAAGCCTGGCTCAGTGCTGCTGCTGAAGCAGATTGGAGTGTTTTCTCCTTCACTTCGAAATCA CTACCTCAACGTGACACCCAACAACCTGGTCCATATTTACAGCCCGGATTCTGGGGATGGGAGCTTCCTCAAGCCATCTCAGCCCTTCCC CAAGGATTCAGGGAGCTTCCAGCATGATGTGGCTGCAAAGCCCGAGGAAGGCTTCAGAACAGCACAGAACCTAGAGGCAGAGGCGTCCCC TGAGGAAGAACTCCCAGAAGCAGATGACCTGGATGGACTCCTGAGTGAGCTTCCTGAAGACTTCTTCTGTGGGACCAGTAGTTGAGACTG CCCCAACGCAGGACAACCCACCATGAGCAGGCAGCTCTGGGCATGTGTCTGGTCACATCCAAGGGGGAGAAGAAGGCCAGCATGATTGGA GAGTGGACACAGCCGGGGGGCTTCTGTGGTTGCTCCCACCCTGGGTGTTTTCCCTGAGAGCCCCCTCATCTCTGCGCTGCCCTCACTTTG GGCCTTCCTTTGCCGTTGGCACCAGAATCCGGCCGGAGACTGGCTCTCCAGCCAACAAGAAAGGCCTGTCACCCTCGCCTTGGGTGTCCC >In-frame_ENST00000531206_ENST00000585683_TCGA-4J-AA1J-01A_CDC27_chr17_45219219_-_C17orf53_chr17_42231924_length(amino acids)=686AA_start in transcript=4_stop in transcript=2064 MTVLQEPVQAAIWQALNHYAYRDAVFLAERLYAEVHSEEALFLLATCYYRSGKAYKAYRLLKGHSCTTPQCKYLLAKCCVDLSKLAEGEQ ILSGGVFNKQKSHDDIVTEFGDSACFTLSLLGHVYCKTDRLAKGSECYQKSLSLNPFLWSPFESLCEIGEKPDPDQTFKFTSLQNFSNCL PNSCTTQVPNHSLSHRQPETVLTETPQDTIELNRLNLESSNSKYSLNTDSSVSYIDSAVISPDTVPLGTGTSILSKQVQNKPKTGRSLLG GPAALSPLTPSFGILPLETPSPGDGSYLQNYTNTPPVIDVPSTGAPSKKTFRVLQSVARIGQTGTKSVFSQSGNSREVTPILAQTQSSGP QTSTTPQVLSPTITSPPNALPRRSSRLFTSDSSTTKENSKKLKMKFPPKIPNRKTKSKTNKGGITQPNINDSLEITKLDSSIISEGKIST ITPQIQAFNLQKAAAEGLMSLLREMGKGYLALCSYNCKEAINILSHLPSHHYNTGWVLCQIGRAYFELSEYMQAALKQLPRNKVPNMAVM IKSLTRSTMDASVVFKDPTGEMQGTVHRLLLETCQNELKPGSVLLLKQIGVFSPSLRNHYLNVTPNNLVHIYSPDSGDGSFLKPSQPFPK -------------------------------------------------------------- >In-frame_ENST00000531206_ENST00000245382_TCGA-4J-AA1J-01A_CDC27_chr17_45219219_-_C17orf53_chr17_42231924_length(transcript)=2500nt_BP=1573nt GAGGATGACGGTGCTGCAGGAACCCGTCCAGGCTGCTATATGGCAAGCACTAAACCACTATGCTTACCGAGATGCGGTTTTCCTCGCAGA ACGCCTTTATGCAGAAGTACACTCAGAAGAAGCCTTGTTTTTACTGGCAACCTGTTATTACCGCTCAGGAAAGGCATATAAAGCATATAG ACTCTTGAAAGGACACAGTTGTACTACACCGCAATGCAAATACCTGCTTGCAAAATGTTGTGTTGATCTCAGCAAGCTTGCAGAAGGGGA ACAAATCTTATCTGGTGGAGTGTTTAATAAGCAGAAAAGCCATGATGATATTGTTACTGAGTTTGGTGATTCAGCTTGCTTTACTCTTTC ATTGTTGGGACATGTATATTGCAAGACAGATCGGCTTGCCAAAGGATCAGAATGTTACCAAAAGAGCCTTAGTTTAAATCCTTTCCTCTG GTCTCCCTTTGAATCATTATGTGAAATAGGTGAAAAGCCAGATCCTGACCAAACATTTAAATTCACATCTTTACAGAACTTTAGCAACTG TCTGCCCAACTCTTGCACAACACAAGTACCTAATCATAGTTTATCTCACAGACAGCCTGAGACAGTTCTTACGGAAACACCCCAGGACAC AATTGAATTAAACAGATTGAATTTAGAATCTTCCAATTCAAAGTACTCCTTGAATACAGATTCCTCAGTGTCTTATATTGATTCAGCTGT AATTTCACCTGATACTGTCCCACTGGGAACAGGAACTTCCATATTATCTAAACAGGTTCAAAATAAACCAAAAACTGGTCGAAGTTTATT AGGAGGACCAGCAGCTCTTAGTCCATTAACCCCAAGTTTTGGGATTTTGCCATTAGAAACCCCAAGTCCTGGAGATGGATCCTATTTACA AAACTACACTAATACACCTCCTGTAATTGATGTGCCATCCACCGGAGCCCCTTCAAAAAAGACTTTTCGTGTTTTACAGTCTGTTGCCAG AATCGGCCAAACTGGAACAAAGTCTGTCTTCTCACAGAGTGGAAATAGCCGAGAGGTAACTCCAATTCTTGCACAAACACAAAGTTCTGG TCCACAAACAAGTACAACACCTCAGGTATTGAGCCCCACTATTACATCTCCCCCAAACGCACTGCCTCGAAGAAGTTCACGACTCTTTAC TAGTGACAGCTCCACAACCAAGGAGAATAGCAAAAAATTAAAAATGAAGTTTCCACCTAAAATCCCAAACAGAAAAACAAAAAGTAAAAC TAATAAAGGAGGAATAACTCAACCTAACATAAATGATAGCCTGGAAATTACAAAATTGGACTCTTCCATCATTTCAGAAGGGAAAATATC CACAATCACACCTCAGATTCAGGCCTTTAATCTACAAAAAGCAGCAGCAGAAGGTTTGATGAGCCTTCTTCGTGAAATGGGGAAAGGTTA TTTAGCTTTGTGTTCATACAACTGCAAAGAAGCTATAAATATTTTGAGCCATCTACCTTCTCACCACTACAATACTGGTTGGGTACTGTG CCAAATTGGAAGGGCCTATTTTGAACTTTCAGAGTACATGCAAGCAGCCCTGAAGCAGCTTCCTAGGAACAAGGTCCCCAACATGGCGGT GATGATCAAGTCCCTGACTCGGAGCACAATGGACGCCAGTGTGGTTTTCAAGGACCCCACGGGAGAGATGCAGGGGACGGTGCACAGGTT GCTGCTGGAGACGTGCCAGAATGAGCTGAAGCCTGGCTCAGTGCTGCTGCTGAAGCAGATTGGAGTGTTTTCTCCTTCACTTCGAAATCA CTACCTCAACGTGACACCCAACAACCTGGTCCATATTTACAGCCCGGATTCTGGGGATGGGAGCTTCCTCAAGCCATCTCAGCCCTTCCC CAAGATGACCTGGATGGACTCCTGAGTGAGCTTCCTGAAGACTTCTTCTGTGGGACCAGTAGTTGAGACTGCCCCAACGCAGGACAACCC ACCATGAGCAGGCAGCTCTGGGCATGTGTCTGGTCACATCCAAGGGGGAGAAGAAGGCCAGCATGATTGGAGAGTGGACACAGCCGGGGG GCTTCTGTGGTTGCTCCCACCCTGGGTGTTTTCCCTGAGAGCCCCCTCATCTCTGCGCTGCCCTCACTTTGGGCCTTCCTTTGCCGTTGG CACCAGAATCCGGCCGGAGACTGGCTCTCCAGCCAACAAGAAAGGCCTGTCACCCTCGCCTTGGGTGTCCCTCTCCTGCCTCAGCTTAAT TTTAGAGGATATTGGGCCTGGTTTTCTTGTCCCTTCATACCCTAGTCCCTGGACAGCTGAGGAGATGAAAGGAGCCACACCACAACAATG GCGGCCTGCCCCTCCACACAGGGGAGAAGCACGCTCAGGCTTCCTCTGCTTTGTCTCTTCAGACCTGTGGTTGCTCTGCTCATCCATGCC >In-frame_ENST00000531206_ENST00000245382_TCGA-4J-AA1J-01A_CDC27_chr17_45219219_-_C17orf53_chr17_42231924_length(amino acids)=636AA_start in transcript=4_stop in transcript=1914 MTVLQEPVQAAIWQALNHYAYRDAVFLAERLYAEVHSEEALFLLATCYYRSGKAYKAYRLLKGHSCTTPQCKYLLAKCCVDLSKLAEGEQ ILSGGVFNKQKSHDDIVTEFGDSACFTLSLLGHVYCKTDRLAKGSECYQKSLSLNPFLWSPFESLCEIGEKPDPDQTFKFTSLQNFSNCL PNSCTTQVPNHSLSHRQPETVLTETPQDTIELNRLNLESSNSKYSLNTDSSVSYIDSAVISPDTVPLGTGTSILSKQVQNKPKTGRSLLG GPAALSPLTPSFGILPLETPSPGDGSYLQNYTNTPPVIDVPSTGAPSKKTFRVLQSVARIGQTGTKSVFSQSGNSREVTPILAQTQSSGP QTSTTPQVLSPTITSPPNALPRRSSRLFTSDSSTTKENSKKLKMKFPPKIPNRKTKSKTNKGGITQPNINDSLEITKLDSSIISEGKIST ITPQIQAFNLQKAAAEGLMSLLREMGKGYLALCSYNCKEAINILSHLPSHHYNTGWVLCQIGRAYFELSEYMQAALKQLPRNKVPNMAVM IKSLTRSTMDASVVFKDPTGEMQGTVHRLLLETCQNELKPGSVLLLKQIGVFSPSLRNHYLNVTPNNLVHIYSPDSGDGSFLKPSQPFPK -------------------------------------------------------------- >In-frame_ENST00000527547_ENST00000319977_TCGA-4J-AA1J-01A_CDC27_chr17_45219219_-_C17orf53_chr17_42231924_length(transcript)=2639nt_BP=1600nt CCGCTACAGGGGGGGCCTGAGGCACTGCAGAAAGTGGGCCTGAGCCTCGAGGATGACGGTGCTGCAGGAACCCGTCCAGGCTGCTATATG GCAAGCACTAAACCACTATGCTTACCGAGATGCGGTTTTCCTCGCAGAACGCCTTTATGCAGAAGTACACTCAGAAGAAGCCTTGTTTTT ACTGGCAACCTGTTATTACCGCTCAGGAAAGGCATATAAAGCATATAGACTCTTGAAAGGACACAGTTGTACTACACCGCAATGCAAATA CCTGCTTGCAAAATGTTGTGTTGATCTCAGCAAGCTTGCAGAAGGGGAACAAATCTTATCTGGTGGAGTGTTTAATAAGCAGAAAAGCCA TGATGATATTGTTACTGAGTTTGGTGATTCAGCTTGCTTTACTCTTTCATTGTTGGGACATGTATATTGCAAGACAGATCGGCTTGCCAA AGGATCAGAATGTTACCAAAAGAGCCTTAGTTTAAATCCTTTCCTCTGGTCTCCCTTTGAATCATTATGTGAAATAGGTGAAAAGCCAGA TCCTGACCAAACATTTAAATTCACATCTTTACAGAACTTTAGCAACTGTCTGCCCAACTCTTGCACAACACAAGTACCTAATCATAGTTT ATCTCACAGACAGCCTGAGACAGTTCTTACGGAAACACCCCAGGACACAATTGAATTAAACAGATTGAATTTAGAATCTTCCAATTCAAA GTACTCCTTGAATACAGATTCCTCAGTGTCTTATATTGATTCAGCTGTAATTTCACCTGATACTGTCCCACTGGGAACAGGAACTTCCAT ATTATCTAAACAGGTTCAAAATAAACCAAAAACTGGTCGAAGTTTATTAGGAGGACCAGCAGCTCTTAGTCCATTAACCCCAAGTTTTGG GATTTTGCCATTAGAAACCCCAAGTCCTGGAGATGGATCCTATTTACAAAACTACACTAATACACCTCCTGTAATTGATGTGCCATCCAC CGGAGCCCCTTCAAAAAAGTCTGTTGCCAGAATCGGCCAAACTGGAACAAAGTCTGTCTTCTCACAGAGTGGAAATAGCCGAGAGGTAAC TCCAATTCTTGCACAAACACAAAGTTCTGGTCCACAAACAAGTACAACACCTCAGGTATTGAGCCCCACTATTACATCTCCCCCAAACGC ACTGCCTCGAAGAAGTTCACGACTCTTTACTAGTGACAGCTCCACAACCAAGGAGAATAGCAAAAAATTAAAAATGAAGTTTCCACCTAA AATCCCAAACAGAAAAACAAAAAGTAAAACTAATAAAGGAGGAATAACTCAACCTAACATAAATGATAGCCTGGAAATTACAAAATTGGA CTCTTCCATCATTTCAGAAGGGAAAATATCCACAATCACACCTCAGATTCAGGCCTTTAATCTACAAAAAGCAGCAGCAGGTTTGATGAG CCTTCTTCGTGAAATGGGGAAAGGTTATTTAGCTTTGTGTTCATACAACTGCAAAGAAGCTATAAATATTTTGAGCCATCTACCTTCTCA CCACTACAATACTGGTTGGGTACTGTGCCAAATTGGAAGGGCCTATTTTGAACTTTCAGAGTACATGCAACAGGCAGCCCTGAAGCAGCT TCCTAGGAACAAGGTCCCCAACATGGCGGTGATGATCAAGTCCCTGACTCGGAGCACAATGGACGCCAGTGTGGTTTTCAAGGACCCCAC GGGAGAGATGCAGGGGACGGTGCACAGGTTGCTGCTGGAGACGTGCCAGAATGAGCTGAAGCCTGGCTCAGTGCTGCTGCTGAAGCAGAT TGGAGTGTTTTCTCCTTCACTTCGAAATCACTACCTCAACGTGACACCCAACAACCTGGTCCATATTTACAGCCCGGATTCTGGGGATGG GAGCTTCCTCAAGCCATCTCAGCCCTTCCCCAAGGATTCAGGGAGCTTCCAGCATGATGTGGCTGCAAAGCCCGAGGAAGGCTTCAGAAC AGCACAGAACCTAGAGGCAGAGGCGTCCCCTGAGGAAGAACTCCCAGAAGCAGATGACCTGGATGGACTCCTGAGTGAGCTTCCTGAAGA CTTCTTCTGTGGGACCAGTAGTTGAGACTGCCCCAACGCAGGACAACCCACCATGAGCAGGCAGCTCTGGGCATGTGTCTGGTCACATCC AAGGGGGAGAAGAAGGCCAGCATGATTGGAGAGTGGACACAGCCGGGGGGCTTCTGTGGTTGCTCCCACCCTGGGTGTTTTCCCTGAGAG CCCCCTCATCTCTGCGCTGCCCTCACTTTGGGCCTTCCTTTGCCGTTGGCACCAGAATCCGGCCGGAGACTGGCTCTCCAGCCAACAAGA AAGGCCTGTCACCCTCGCCTTGGGTGTCCCTCTCCTGCCTCAGCTTAATTTTAGAGGATATTGGGCCTGGTTTTCTTGTCCCTTCATACC CTAGTCCCTGGACAGCTGAGGAGATGAAAGGAGCCACACCACAACAATGGCGGCCTGCCCCTCCACACAGGGGAGAAGCACGCTCAGGCT TCCTCTGCTTTGTCTCTTCAGACCTGTGGTTGCTCTGCTCATCCATGCCCAAGGTTCCCAGGTGCAGGACAGAGGTGTGGCCTATTGTAC >In-frame_ENST00000527547_ENST00000319977_TCGA-4J-AA1J-01A_CDC27_chr17_45219219_-_C17orf53_chr17_42231924_length(amino acids)=680AA_start in transcript=52_stop in transcript=2094 MTVLQEPVQAAIWQALNHYAYRDAVFLAERLYAEVHSEEALFLLATCYYRSGKAYKAYRLLKGHSCTTPQCKYLLAKCCVDLSKLAEGEQ ILSGGVFNKQKSHDDIVTEFGDSACFTLSLLGHVYCKTDRLAKGSECYQKSLSLNPFLWSPFESLCEIGEKPDPDQTFKFTSLQNFSNCL PNSCTTQVPNHSLSHRQPETVLTETPQDTIELNRLNLESSNSKYSLNTDSSVSYIDSAVISPDTVPLGTGTSILSKQVQNKPKTGRSLLG GPAALSPLTPSFGILPLETPSPGDGSYLQNYTNTPPVIDVPSTGAPSKKSVARIGQTGTKSVFSQSGNSREVTPILAQTQSSGPQTSTTP QVLSPTITSPPNALPRRSSRLFTSDSSTTKENSKKLKMKFPPKIPNRKTKSKTNKGGITQPNINDSLEITKLDSSIISEGKISTITPQIQ AFNLQKAAAGLMSLLREMGKGYLALCSYNCKEAINILSHLPSHHYNTGWVLCQIGRAYFELSEYMQQAALKQLPRNKVPNMAVMIKSLTR STMDASVVFKDPTGEMQGTVHRLLLETCQNELKPGSVLLLKQIGVFSPSLRNHYLNVTPNNLVHIYSPDSGDGSFLKPSQPFPKDSGSFQ -------------------------------------------------------------- >In-frame_ENST00000527547_ENST00000585683_TCGA-4J-AA1J-01A_CDC27_chr17_45219219_-_C17orf53_chr17_42231924_length(transcript)=2445nt_BP=1600nt CCGCTACAGGGGGGGCCTGAGGCACTGCAGAAAGTGGGCCTGAGCCTCGAGGATGACGGTGCTGCAGGAACCCGTCCAGGCTGCTATATG GCAAGCACTAAACCACTATGCTTACCGAGATGCGGTTTTCCTCGCAGAACGCCTTTATGCAGAAGTACACTCAGAAGAAGCCTTGTTTTT ACTGGCAACCTGTTATTACCGCTCAGGAAAGGCATATAAAGCATATAGACTCTTGAAAGGACACAGTTGTACTACACCGCAATGCAAATA CCTGCTTGCAAAATGTTGTGTTGATCTCAGCAAGCTTGCAGAAGGGGAACAAATCTTATCTGGTGGAGTGTTTAATAAGCAGAAAAGCCA TGATGATATTGTTACTGAGTTTGGTGATTCAGCTTGCTTTACTCTTTCATTGTTGGGACATGTATATTGCAAGACAGATCGGCTTGCCAA AGGATCAGAATGTTACCAAAAGAGCCTTAGTTTAAATCCTTTCCTCTGGTCTCCCTTTGAATCATTATGTGAAATAGGTGAAAAGCCAGA TCCTGACCAAACATTTAAATTCACATCTTTACAGAACTTTAGCAACTGTCTGCCCAACTCTTGCACAACACAAGTACCTAATCATAGTTT ATCTCACAGACAGCCTGAGACAGTTCTTACGGAAACACCCCAGGACACAATTGAATTAAACAGATTGAATTTAGAATCTTCCAATTCAAA GTACTCCTTGAATACAGATTCCTCAGTGTCTTATATTGATTCAGCTGTAATTTCACCTGATACTGTCCCACTGGGAACAGGAACTTCCAT ATTATCTAAACAGGTTCAAAATAAACCAAAAACTGGTCGAAGTTTATTAGGAGGACCAGCAGCTCTTAGTCCATTAACCCCAAGTTTTGG GATTTTGCCATTAGAAACCCCAAGTCCTGGAGATGGATCCTATTTACAAAACTACACTAATACACCTCCTGTAATTGATGTGCCATCCAC CGGAGCCCCTTCAAAAAAGTCTGTTGCCAGAATCGGCCAAACTGGAACAAAGTCTGTCTTCTCACAGAGTGGAAATAGCCGAGAGGTAAC TCCAATTCTTGCACAAACACAAAGTTCTGGTCCACAAACAAGTACAACACCTCAGGTATTGAGCCCCACTATTACATCTCCCCCAAACGC ACTGCCTCGAAGAAGTTCACGACTCTTTACTAGTGACAGCTCCACAACCAAGGAGAATAGCAAAAAATTAAAAATGAAGTTTCCACCTAA AATCCCAAACAGAAAAACAAAAAGTAAAACTAATAAAGGAGGAATAACTCAACCTAACATAAATGATAGCCTGGAAATTACAAAATTGGA CTCTTCCATCATTTCAGAAGGGAAAATATCCACAATCACACCTCAGATTCAGGCCTTTAATCTACAAAAAGCAGCAGCAGGTTTGATGAG CCTTCTTCGTGAAATGGGGAAAGGTTATTTAGCTTTGTGTTCATACAACTGCAAAGAAGCTATAAATATTTTGAGCCATCTACCTTCTCA CCACTACAATACTGGTTGGGTACTGTGCCAAATTGGAAGGGCCTATTTTGAACTTTCAGAGTACATGCAAGCAGCCCTGAAGCAGCTTCC TAGGAACAAGGTCCCCAACATGGCGGTGATGATCAAGTCCCTGACTCGGAGCACAATGGACGCCAGTGTGGTTTTCAAGGACCCCACGGG AGAGATGCAGGGGACGGTGCACAGGTTGCTGCTGGAGACGTGCCAGAATGAGCTGAAGCCTGGCTCAGTGCTGCTGCTGAAGCAGATTGG AGTGTTTTCTCCTTCACTTCGAAATCACTACCTCAACGTGACACCCAACAACCTGGTCCATATTTACAGCCCGGATTCTGGGGATGGGAG CTTCCTCAAGCCATCTCAGCCCTTCCCCAAGGATTCAGGGAGCTTCCAGCATGATGTGGCTGCAAAGCCCGAGGAAGGCTTCAGAACAGC ACAGAACCTAGAGGCAGAGGCGTCCCCTGAGGAAGAACTCCCAGAAGCAGATGACCTGGATGGACTCCTGAGTGAGCTTCCTGAAGACTT CTTCTGTGGGACCAGTAGTTGAGACTGCCCCAACGCAGGACAACCCACCATGAGCAGGCAGCTCTGGGCATGTGTCTGGTCACATCCAAG GGGGAGAAGAAGGCCAGCATGATTGGAGAGTGGACACAGCCGGGGGGCTTCTGTGGTTGCTCCCACCCTGGGTGTTTTCCCTGAGAGCCC CCTCATCTCTGCGCTGCCCTCACTTTGGGCCTTCCTTTGCCGTTGGCACCAGAATCCGGCCGGAGACTGGCTCTCCAGCCAACAAGAAAG GCCTGTCACCCTCGCCTTGGGTGTCCCTCTCCTGCCTCAGCTTAATTTTAGAGGATATTGGGCCTGGTTTTCTTGTCCCTTCATACCCTA >In-frame_ENST00000527547_ENST00000585683_TCGA-4J-AA1J-01A_CDC27_chr17_45219219_-_C17orf53_chr17_42231924_length(amino acids)=679AA_start in transcript=52_stop in transcript=2091 MTVLQEPVQAAIWQALNHYAYRDAVFLAERLYAEVHSEEALFLLATCYYRSGKAYKAYRLLKGHSCTTPQCKYLLAKCCVDLSKLAEGEQ ILSGGVFNKQKSHDDIVTEFGDSACFTLSLLGHVYCKTDRLAKGSECYQKSLSLNPFLWSPFESLCEIGEKPDPDQTFKFTSLQNFSNCL PNSCTTQVPNHSLSHRQPETVLTETPQDTIELNRLNLESSNSKYSLNTDSSVSYIDSAVISPDTVPLGTGTSILSKQVQNKPKTGRSLLG GPAALSPLTPSFGILPLETPSPGDGSYLQNYTNTPPVIDVPSTGAPSKKSVARIGQTGTKSVFSQSGNSREVTPILAQTQSSGPQTSTTP QVLSPTITSPPNALPRRSSRLFTSDSSTTKENSKKLKMKFPPKIPNRKTKSKTNKGGITQPNINDSLEITKLDSSIISEGKISTITPQIQ AFNLQKAAAGLMSLLREMGKGYLALCSYNCKEAINILSHLPSHHYNTGWVLCQIGRAYFELSEYMQAALKQLPRNKVPNMAVMIKSLTRS TMDASVVFKDPTGEMQGTVHRLLLETCQNELKPGSVLLLKQIGVFSPSLRNHYLNVTPNNLVHIYSPDSGDGSFLKPSQPFPKDSGSFQH -------------------------------------------------------------- >In-frame_ENST00000527547_ENST00000245382_TCGA-4J-AA1J-01A_CDC27_chr17_45219219_-_C17orf53_chr17_42231924_length(transcript)=2527nt_BP=1600nt CCGCTACAGGGGGGGCCTGAGGCACTGCAGAAAGTGGGCCTGAGCCTCGAGGATGACGGTGCTGCAGGAACCCGTCCAGGCTGCTATATG GCAAGCACTAAACCACTATGCTTACCGAGATGCGGTTTTCCTCGCAGAACGCCTTTATGCAGAAGTACACTCAGAAGAAGCCTTGTTTTT ACTGGCAACCTGTTATTACCGCTCAGGAAAGGCATATAAAGCATATAGACTCTTGAAAGGACACAGTTGTACTACACCGCAATGCAAATA CCTGCTTGCAAAATGTTGTGTTGATCTCAGCAAGCTTGCAGAAGGGGAACAAATCTTATCTGGTGGAGTGTTTAATAAGCAGAAAAGCCA TGATGATATTGTTACTGAGTTTGGTGATTCAGCTTGCTTTACTCTTTCATTGTTGGGACATGTATATTGCAAGACAGATCGGCTTGCCAA AGGATCAGAATGTTACCAAAAGAGCCTTAGTTTAAATCCTTTCCTCTGGTCTCCCTTTGAATCATTATGTGAAATAGGTGAAAAGCCAGA TCCTGACCAAACATTTAAATTCACATCTTTACAGAACTTTAGCAACTGTCTGCCCAACTCTTGCACAACACAAGTACCTAATCATAGTTT ATCTCACAGACAGCCTGAGACAGTTCTTACGGAAACACCCCAGGACACAATTGAATTAAACAGATTGAATTTAGAATCTTCCAATTCAAA GTACTCCTTGAATACAGATTCCTCAGTGTCTTATATTGATTCAGCTGTAATTTCACCTGATACTGTCCCACTGGGAACAGGAACTTCCAT ATTATCTAAACAGGTTCAAAATAAACCAAAAACTGGTCGAAGTTTATTAGGAGGACCAGCAGCTCTTAGTCCATTAACCCCAAGTTTTGG GATTTTGCCATTAGAAACCCCAAGTCCTGGAGATGGATCCTATTTACAAAACTACACTAATACACCTCCTGTAATTGATGTGCCATCCAC CGGAGCCCCTTCAAAAAAGTCTGTTGCCAGAATCGGCCAAACTGGAACAAAGTCTGTCTTCTCACAGAGTGGAAATAGCCGAGAGGTAAC TCCAATTCTTGCACAAACACAAAGTTCTGGTCCACAAACAAGTACAACACCTCAGGTATTGAGCCCCACTATTACATCTCCCCCAAACGC ACTGCCTCGAAGAAGTTCACGACTCTTTACTAGTGACAGCTCCACAACCAAGGAGAATAGCAAAAAATTAAAAATGAAGTTTCCACCTAA AATCCCAAACAGAAAAACAAAAAGTAAAACTAATAAAGGAGGAATAACTCAACCTAACATAAATGATAGCCTGGAAATTACAAAATTGGA CTCTTCCATCATTTCAGAAGGGAAAATATCCACAATCACACCTCAGATTCAGGCCTTTAATCTACAAAAAGCAGCAGCAGGTTTGATGAG CCTTCTTCGTGAAATGGGGAAAGGTTATTTAGCTTTGTGTTCATACAACTGCAAAGAAGCTATAAATATTTTGAGCCATCTACCTTCTCA CCACTACAATACTGGTTGGGTACTGTGCCAAATTGGAAGGGCCTATTTTGAACTTTCAGAGTACATGCAAGCAGCCCTGAAGCAGCTTCC TAGGAACAAGGTCCCCAACATGGCGGTGATGATCAAGTCCCTGACTCGGAGCACAATGGACGCCAGTGTGGTTTTCAAGGACCCCACGGG AGAGATGCAGGGGACGGTGCACAGGTTGCTGCTGGAGACGTGCCAGAATGAGCTGAAGCCTGGCTCAGTGCTGCTGCTGAAGCAGATTGG AGTGTTTTCTCCTTCACTTCGAAATCACTACCTCAACGTGACACCCAACAACCTGGTCCATATTTACAGCCCGGATTCTGGGGATGGGAG CTTCCTCAAGCCATCTCAGCCCTTCCCCAAGATGACCTGGATGGACTCCTGAGTGAGCTTCCTGAAGACTTCTTCTGTGGGACCAGTAGT TGAGACTGCCCCAACGCAGGACAACCCACCATGAGCAGGCAGCTCTGGGCATGTGTCTGGTCACATCCAAGGGGGAGAAGAAGGCCAGCA TGATTGGAGAGTGGACACAGCCGGGGGGCTTCTGTGGTTGCTCCCACCCTGGGTGTTTTCCCTGAGAGCCCCCTCATCTCTGCGCTGCCC TCACTTTGGGCCTTCCTTTGCCGTTGGCACCAGAATCCGGCCGGAGACTGGCTCTCCAGCCAACAAGAAAGGCCTGTCACCCTCGCCTTG GGTGTCCCTCTCCTGCCTCAGCTTAATTTTAGAGGATATTGGGCCTGGTTTTCTTGTCCCTTCATACCCTAGTCCCTGGACAGCTGAGGA GATGAAAGGAGCCACACCACAACAATGGCGGCCTGCCCCTCCACACAGGGGAGAAGCACGCTCAGGCTTCCTCTGCTTTGTCTCTTCAGA CCTGTGGTTGCTCTGCTCATCCATGCCCAAGGTTCCCAGGTGCAGGACAGAGGTGTGGCCTATTGTACCTTGTTCTGAAATAAAGCATCT >In-frame_ENST00000527547_ENST00000245382_TCGA-4J-AA1J-01A_CDC27_chr17_45219219_-_C17orf53_chr17_42231924_length(amino acids)=629AA_start in transcript=52_stop in transcript=1941 MTVLQEPVQAAIWQALNHYAYRDAVFLAERLYAEVHSEEALFLLATCYYRSGKAYKAYRLLKGHSCTTPQCKYLLAKCCVDLSKLAEGEQ ILSGGVFNKQKSHDDIVTEFGDSACFTLSLLGHVYCKTDRLAKGSECYQKSLSLNPFLWSPFESLCEIGEKPDPDQTFKFTSLQNFSNCL PNSCTTQVPNHSLSHRQPETVLTETPQDTIELNRLNLESSNSKYSLNTDSSVSYIDSAVISPDTVPLGTGTSILSKQVQNKPKTGRSLLG GPAALSPLTPSFGILPLETPSPGDGSYLQNYTNTPPVIDVPSTGAPSKKSVARIGQTGTKSVFSQSGNSREVTPILAQTQSSGPQTSTTP QVLSPTITSPPNALPRRSSRLFTSDSSTTKENSKKLKMKFPPKIPNRKTKSKTNKGGITQPNINDSLEITKLDSSIISEGKISTITPQIQ AFNLQKAAAGLMSLLREMGKGYLALCSYNCKEAINILSHLPSHHYNTGWVLCQIGRAYFELSEYMQAALKQLPRNKVPNMAVMIKSLTRS -------------------------------------------------------------- |
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Fusion Gene PPI Analysis for CDC27-C17orf53 |
Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in |
Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
Hgene | Hgene's interactors | Tgene | Tgene's interactors |
- Retained PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
- Lost PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
- Retained PPIs, but lost function due to frame-shift fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Related Drugs for CDC27-C17orf53 |
Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.8 2021-05-08) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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Related Diseases for CDC27-C17orf53 |
Diseases associated with fusion partners. (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Hgene | CDC27 | C0033578 | Prostatic Neoplasms | 1 | CTD_human |
Hgene | CDC27 | C0376358 | Malignant neoplasm of prostate | 1 | CTD_human |