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Fusion Gene Summary | |
Fusion Gene ORF analysis | |
Fusion Genomic Features | |
Fusion Protein Features | |
Fusion Gene Sequence | |
Fusion Gene PPI analysis | |
Related Drugs | |
Related Diseases |
Fusion gene:CDH1-CIRH1A (FusionGDB2 ID:15019) |
Fusion Gene Summary for CDH1-CIRH1A |
Fusion gene summary |
Fusion gene information | Fusion gene name: CDH1-CIRH1A | Fusion gene ID: 15019 | Hgene | Tgene | Gene symbol | CDH1 | CIRH1A | Gene ID | 51343 | 84916 |
Gene name | fizzy and cell division cycle 20 related 1 | UTP4 small subunit processome component | |
Synonyms | CDC20C|CDH1|FZR|FZR2|HCDH|HCDH1 | CIRH1A|CIRHIN|NAIC|TEX292 | |
Cytomap | 19p13.3 | 16q22.1 | |
Type of gene | protein-coding | protein-coding | |
Description | fizzy-related protein homologCDC20 homolog 1CDC20-like 1bCDC20-like protein 1cdh1/Hct1 homologfizzy/cell division cycle 20 related 1 | U3 small nucleolar RNA-associated protein 4 homologUTP4 small subunit (SSU) processome componentUTP4, small subunit (SSU) processome component, homologcirrhosis, autosomal recessive 1A (cirhin)testis expressed gene 292 | |
Modification date | 20200313 | 20200313 | |
UniProtAcc | P12830 | . | |
Ensembl transtripts involved in fusion gene | ENST00000261769, ENST00000422392, ENST00000562836, | ENST00000314423, ENST00000352319, ENST00000563094, ENST00000569615, | |
Fusion gene scores | * DoF score | 21 X 16 X 8=2688 | 4 X 8 X 6=192 |
# samples | 29 | 8 | |
** MAII score | log2(29/2688*10)=-3.21240833276383 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(8/192*10)=-1.26303440583379 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
Context | PubMed: CDH1 [Title/Abstract] AND CIRH1A [Title/Abstract] AND fusion [Title/Abstract] | ||
Most frequent breakpoint | CDH1(68835796)-CIRH1A(69170598), # samples:1 CDH1(68849662)-CIRH1A(69194258), # samples:1 CDH1(68772314)-CIRH1A(69177080), # samples:1 | ||
Anticipated loss of major functional domain due to fusion event. | CDH1-CIRH1A seems lost the major protein functional domain in Hgene partner, which is a CGC due to the frame-shifted ORF. CDH1-CIRH1A seems lost the major protein functional domain in Hgene partner, which is a tumor suppressor due to the frame-shifted ORF. |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
Partner | Gene | GO ID | GO term | PubMed ID |
Hgene | CDH1 | GO:0031145 | anaphase-promoting complex-dependent catabolic process | 18662541|21596315 |
Hgene | CDH1 | GO:0072425 | signal transduction involved in G2 DNA damage checkpoint | 18662541 |
Hgene | CDH1 | GO:1904668 | positive regulation of ubiquitin protein ligase activity | 11459826 |
Tgene | CIRH1A | GO:0006355 | regulation of transcription, DNA-templated | 19732766 |
Fusion gene breakpoints across CDH1 (5'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
Fusion gene breakpoints across CIRH1A (3'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Source | Disease | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
ChimerDB4 | BRCA | TCGA-A7-A6VX | CDH1 | chr16 | 68835796 | + | CIRH1A | chr16 | 69170598 | + |
ChimerDB4 | ESCA | TCGA-L5-A8NF | CDH1 | chr16 | 68849662 | + | CIRH1A | chr16 | 69194258 | + |
ChimerDB4 | STAD | TCGA-D7-6518 | CDH1 | chr16 | 68772314 | + | CIRH1A | chr16 | 69177080 | + |
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Fusion Gene ORF analysis for CDH1-CIRH1A |
Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
In-frame | ENST00000261769 | ENST00000314423 | CDH1 | chr16 | 68835796 | + | CIRH1A | chr16 | 69170598 | + |
In-frame | ENST00000261769 | ENST00000352319 | CDH1 | chr16 | 68835796 | + | CIRH1A | chr16 | 69170598 | + |
In-frame | ENST00000261769 | ENST00000563094 | CDH1 | chr16 | 68835796 | + | CIRH1A | chr16 | 69170598 | + |
5CDS-intron | ENST00000261769 | ENST00000569615 | CDH1 | chr16 | 68835796 | + | CIRH1A | chr16 | 69170598 | + |
In-frame | ENST00000422392 | ENST00000314423 | CDH1 | chr16 | 68835796 | + | CIRH1A | chr16 | 69170598 | + |
In-frame | ENST00000422392 | ENST00000352319 | CDH1 | chr16 | 68835796 | + | CIRH1A | chr16 | 69170598 | + |
In-frame | ENST00000422392 | ENST00000563094 | CDH1 | chr16 | 68835796 | + | CIRH1A | chr16 | 69170598 | + |
5CDS-intron | ENST00000422392 | ENST00000569615 | CDH1 | chr16 | 68835796 | + | CIRH1A | chr16 | 69170598 | + |
3UTR-3CDS | ENST00000562836 | ENST00000314423 | CDH1 | chr16 | 68835796 | + | CIRH1A | chr16 | 69170598 | + |
3UTR-3CDS | ENST00000562836 | ENST00000352319 | CDH1 | chr16 | 68835796 | + | CIRH1A | chr16 | 69170598 | + |
3UTR-3CDS | ENST00000562836 | ENST00000563094 | CDH1 | chr16 | 68835796 | + | CIRH1A | chr16 | 69170598 | + |
3UTR-intron | ENST00000562836 | ENST00000569615 | CDH1 | chr16 | 68835796 | + | CIRH1A | chr16 | 69170598 | + |
Frame-shift | ENST00000261769 | ENST00000314423 | CDH1 | chr16 | 68849662 | + | CIRH1A | chr16 | 69194258 | + |
Frame-shift | ENST00000261769 | ENST00000352319 | CDH1 | chr16 | 68849662 | + | CIRH1A | chr16 | 69194258 | + |
Frame-shift | ENST00000261769 | ENST00000563094 | CDH1 | chr16 | 68849662 | + | CIRH1A | chr16 | 69194258 | + |
5CDS-intron | ENST00000261769 | ENST00000569615 | CDH1 | chr16 | 68849662 | + | CIRH1A | chr16 | 69194258 | + |
Frame-shift | ENST00000422392 | ENST00000314423 | CDH1 | chr16 | 68849662 | + | CIRH1A | chr16 | 69194258 | + |
Frame-shift | ENST00000422392 | ENST00000352319 | CDH1 | chr16 | 68849662 | + | CIRH1A | chr16 | 69194258 | + |
Frame-shift | ENST00000422392 | ENST00000563094 | CDH1 | chr16 | 68849662 | + | CIRH1A | chr16 | 69194258 | + |
5CDS-intron | ENST00000422392 | ENST00000569615 | CDH1 | chr16 | 68849662 | + | CIRH1A | chr16 | 69194258 | + |
3UTR-3CDS | ENST00000562836 | ENST00000314423 | CDH1 | chr16 | 68849662 | + | CIRH1A | chr16 | 69194258 | + |
3UTR-3CDS | ENST00000562836 | ENST00000352319 | CDH1 | chr16 | 68849662 | + | CIRH1A | chr16 | 69194258 | + |
3UTR-3CDS | ENST00000562836 | ENST00000563094 | CDH1 | chr16 | 68849662 | + | CIRH1A | chr16 | 69194258 | + |
3UTR-intron | ENST00000562836 | ENST00000569615 | CDH1 | chr16 | 68849662 | + | CIRH1A | chr16 | 69194258 | + |
In-frame | ENST00000261769 | ENST00000314423 | CDH1 | chr16 | 68772314 | + | CIRH1A | chr16 | 69177080 | + |
In-frame | ENST00000261769 | ENST00000352319 | CDH1 | chr16 | 68772314 | + | CIRH1A | chr16 | 69177080 | + |
In-frame | ENST00000261769 | ENST00000563094 | CDH1 | chr16 | 68772314 | + | CIRH1A | chr16 | 69177080 | + |
5CDS-3UTR | ENST00000261769 | ENST00000569615 | CDH1 | chr16 | 68772314 | + | CIRH1A | chr16 | 69177080 | + |
In-frame | ENST00000422392 | ENST00000314423 | CDH1 | chr16 | 68772314 | + | CIRH1A | chr16 | 69177080 | + |
In-frame | ENST00000422392 | ENST00000352319 | CDH1 | chr16 | 68772314 | + | CIRH1A | chr16 | 69177080 | + |
In-frame | ENST00000422392 | ENST00000563094 | CDH1 | chr16 | 68772314 | + | CIRH1A | chr16 | 69177080 | + |
5CDS-3UTR | ENST00000422392 | ENST00000569615 | CDH1 | chr16 | 68772314 | + | CIRH1A | chr16 | 69177080 | + |
intron-3CDS | ENST00000562836 | ENST00000314423 | CDH1 | chr16 | 68772314 | + | CIRH1A | chr16 | 69177080 | + |
intron-3CDS | ENST00000562836 | ENST00000352319 | CDH1 | chr16 | 68772314 | + | CIRH1A | chr16 | 69177080 | + |
intron-3CDS | ENST00000562836 | ENST00000563094 | CDH1 | chr16 | 68772314 | + | CIRH1A | chr16 | 69177080 | + |
intron-3UTR | ENST00000562836 | ENST00000569615 | CDH1 | chr16 | 68772314 | + | CIRH1A | chr16 | 69177080 | + |
ORFfinder result based on the fusion transcript sequence of in-frame fusion genes. |
Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | Seq length (transcript) | BP loci (transcript) | Predicted start (transcript) | Predicted stop (transcript) | Seq length (amino acids) |
ENST00000261769 | CDH1 | chr16 | 68835796 | + | ENST00000314423 | CIRH1A | chr16 | 69170598 | + | 2564 | 578 | 41 | 2479 | 812 |
ENST00000261769 | CDH1 | chr16 | 68835796 | + | ENST00000352319 | CIRH1A | chr16 | 69170598 | + | 2218 | 578 | 41 | 2134 | 697 |
ENST00000261769 | CDH1 | chr16 | 68835796 | + | ENST00000563094 | CIRH1A | chr16 | 69170598 | + | 4568 | 578 | 41 | 2296 | 751 |
ENST00000422392 | CDH1 | chr16 | 68835796 | + | ENST00000314423 | CIRH1A | chr16 | 69170598 | + | 2437 | 451 | 64 | 2352 | 762 |
ENST00000422392 | CDH1 | chr16 | 68835796 | + | ENST00000352319 | CIRH1A | chr16 | 69170598 | + | 2091 | 451 | 64 | 2007 | 647 |
ENST00000422392 | CDH1 | chr16 | 68835796 | + | ENST00000563094 | CIRH1A | chr16 | 69170598 | + | 4441 | 451 | 64 | 2169 | 701 |
ENST00000261769 | CDH1 | chr16 | 68772314 | + | ENST00000314423 | CIRH1A | chr16 | 69177080 | + | 1973 | 354 | 41 | 1888 | 615 |
ENST00000261769 | CDH1 | chr16 | 68772314 | + | ENST00000352319 | CIRH1A | chr16 | 69177080 | + | 1627 | 354 | 41 | 1543 | 500 |
ENST00000261769 | CDH1 | chr16 | 68772314 | + | ENST00000563094 | CIRH1A | chr16 | 69177080 | + | 3977 | 354 | 41 | 1705 | 554 |
ENST00000422392 | CDH1 | chr16 | 68772314 | + | ENST00000314423 | CIRH1A | chr16 | 69177080 | + | 1846 | 227 | 64 | 1761 | 565 |
ENST00000422392 | CDH1 | chr16 | 68772314 | + | ENST00000352319 | CIRH1A | chr16 | 69177080 | + | 1500 | 227 | 64 | 1416 | 450 |
ENST00000422392 | CDH1 | chr16 | 68772314 | + | ENST00000563094 | CIRH1A | chr16 | 69177080 | + | 3850 | 227 | 64 | 1578 | 504 |
DeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated. |
Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | No-coding score | Coding score |
ENST00000261769 | ENST00000314423 | CDH1 | chr16 | 68835796 | + | CIRH1A | chr16 | 69170598 | + | 0.002870255 | 0.99712974 |
ENST00000261769 | ENST00000352319 | CDH1 | chr16 | 68835796 | + | CIRH1A | chr16 | 69170598 | + | 0.003591472 | 0.9964085 |
ENST00000261769 | ENST00000563094 | CDH1 | chr16 | 68835796 | + | CIRH1A | chr16 | 69170598 | + | 0.001251161 | 0.9987488 |
ENST00000422392 | ENST00000314423 | CDH1 | chr16 | 68835796 | + | CIRH1A | chr16 | 69170598 | + | 0.002356841 | 0.9976432 |
ENST00000422392 | ENST00000352319 | CDH1 | chr16 | 68835796 | + | CIRH1A | chr16 | 69170598 | + | 0.002859074 | 0.997141 |
ENST00000422392 | ENST00000563094 | CDH1 | chr16 | 68835796 | + | CIRH1A | chr16 | 69170598 | + | 0.001059073 | 0.9989409 |
ENST00000261769 | ENST00000314423 | CDH1 | chr16 | 68772314 | + | CIRH1A | chr16 | 69177080 | + | 0.018080665 | 0.9819194 |
ENST00000261769 | ENST00000352319 | CDH1 | chr16 | 68772314 | + | CIRH1A | chr16 | 69177080 | + | 0.007019423 | 0.9929806 |
ENST00000261769 | ENST00000563094 | CDH1 | chr16 | 68772314 | + | CIRH1A | chr16 | 69177080 | + | 0.008966003 | 0.991034 |
ENST00000422392 | ENST00000314423 | CDH1 | chr16 | 68772314 | + | CIRH1A | chr16 | 69177080 | + | 0.01537603 | 0.9846239 |
ENST00000422392 | ENST00000352319 | CDH1 | chr16 | 68772314 | + | CIRH1A | chr16 | 69177080 | + | 0.0056893 | 0.99431074 |
ENST00000422392 | ENST00000563094 | CDH1 | chr16 | 68772314 | + | CIRH1A | chr16 | 69177080 | + | 0.007623277 | 0.9923767 |
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Fusion Genomic Features for CDH1-CIRH1A |
FusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints. |
Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | 1-p | p (fusion gene breakpoint) |
CDH1 | chr16 | 68835796 | + | CIRH1A | chr16 | 69170598 | + | 6.97E-05 | 0.99993026 |
CDH1 | chr16 | 68849662 | + | CIRH1A | chr16 | 69194258 | + | 1.98E-07 | 0.99999976 |
CDH1 | chr16 | 68772314 | + | CIRH1A | chr16 | 69177080 | + | 9.81E-10 | 1 |
CDH1 | chr16 | 68835796 | + | CIRH1A | chr16 | 69170598 | + | 6.97E-05 | 0.99993026 |
CDH1 | chr16 | 68849662 | + | CIRH1A | chr16 | 69194258 | + | 1.98E-07 | 0.99999976 |
CDH1 | chr16 | 68772314 | + | CIRH1A | chr16 | 69177080 | + | 9.81E-10 | 1 |
Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page. |
Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page. |
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Fusion Protein Features for CDH1-CIRH1A |
Go to FGviewer for the breakpoints of chr16:68835796-chr16:69170598 - FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels. |
Main function of each fusion partner protein. (from UniProt) |
Hgene | Tgene |
CDH1 | . |
FUNCTION: Cadherins are calcium-dependent cell adhesion proteins (PubMed:11976333). They preferentially interact with themselves in a homophilic manner in connecting cells; cadherins may thus contribute to the sorting of heterogeneous cell types. CDH1 is involved in mechanisms regulating cell-cell adhesions, mobility and proliferation of epithelial cells (PubMed:11976333). Has a potent invasive suppressor role. It is a ligand for integrin alpha-E/beta-7. {ECO:0000269|PubMed:11976333, ECO:0000269|PubMed:16417575}.; FUNCTION: E-Cad/CTF2 promotes non-amyloidogenic degradation of Abeta precursors. Has a strong inhibitory effect on APP C99 and C83 production. {ECO:0000269|PubMed:16417575}.; FUNCTION: (Microbial infection) Serves as a receptor for Listeria monocytogenes; internalin A (InlA) binds to this protein and promotes uptake of the bacteria. {ECO:0000269|PubMed:10406800, ECO:0000269|PubMed:17540170, ECO:0000269|PubMed:8601315}. | FUNCTION: Might normally function as a transcriptional repressor. EWS-fusion-proteins (EFPS) may play a role in the tumorigenic process. They may disturb gene expression by mimicking, or interfering with the normal function of CTD-POLII within the transcription initiation complex. They may also contribute to an aberrant activation of the fusion protein target genes. |
Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Tgene | CIRH1A | chr16:68772314 | chr16:69177080 | ENST00000314423 | 4 | 17 | 182_226 | 175.33333333333334 | 687.0 | Repeat | Note=WD 5 | |
Tgene | CIRH1A | chr16:68772314 | chr16:69177080 | ENST00000314423 | 4 | 17 | 227_275 | 175.33333333333334 | 687.0 | Repeat | Note=WD 6 | |
Tgene | CIRH1A | chr16:68772314 | chr16:69177080 | ENST00000314423 | 4 | 17 | 276_317 | 175.33333333333334 | 687.0 | Repeat | Note=WD 7 | |
Tgene | CIRH1A | chr16:68772314 | chr16:69177080 | ENST00000314423 | 4 | 17 | 318_377 | 175.33333333333334 | 687.0 | Repeat | Note=WD 8 | |
Tgene | CIRH1A | chr16:68772314 | chr16:69177080 | ENST00000314423 | 4 | 17 | 378_427 | 175.33333333333334 | 687.0 | Repeat | Note=WD 9 | |
Tgene | CIRH1A | chr16:68772314 | chr16:69177080 | ENST00000314423 | 4 | 17 | 428_475 | 175.33333333333334 | 687.0 | Repeat | Note=WD 10 | |
Tgene | CIRH1A | chr16:68772314 | chr16:69177080 | ENST00000314423 | 4 | 17 | 476_516 | 175.33333333333334 | 687.0 | Repeat | Note=WD 11 | |
Tgene | CIRH1A | chr16:68772314 | chr16:69177080 | ENST00000314423 | 4 | 17 | 517_566 | 175.33333333333334 | 687.0 | Repeat | Note=WD 12 | |
Tgene | CIRH1A | chr16:68772314 | chr16:69177080 | ENST00000314423 | 4 | 17 | 567_627 | 175.33333333333334 | 687.0 | Repeat | Note=WD 13 | |
Tgene | CIRH1A | chr16:68772314 | chr16:69177080 | ENST00000314423 | 4 | 17 | 628_666 | 175.33333333333334 | 687.0 | Repeat | Note=WD 14 | |
Tgene | CIRH1A | chr16:68772314 | chr16:69177080 | ENST00000352319 | 4 | 14 | 182_226 | 175.33333333333334 | 572.0 | Repeat | Note=WD 5 | |
Tgene | CIRH1A | chr16:68772314 | chr16:69177080 | ENST00000352319 | 4 | 14 | 227_275 | 175.33333333333334 | 572.0 | Repeat | Note=WD 6 | |
Tgene | CIRH1A | chr16:68772314 | chr16:69177080 | ENST00000352319 | 4 | 14 | 276_317 | 175.33333333333334 | 572.0 | Repeat | Note=WD 7 | |
Tgene | CIRH1A | chr16:68772314 | chr16:69177080 | ENST00000352319 | 4 | 14 | 318_377 | 175.33333333333334 | 572.0 | Repeat | Note=WD 8 | |
Tgene | CIRH1A | chr16:68772314 | chr16:69177080 | ENST00000352319 | 4 | 14 | 378_427 | 175.33333333333334 | 572.0 | Repeat | Note=WD 9 | |
Tgene | CIRH1A | chr16:68772314 | chr16:69177080 | ENST00000352319 | 4 | 14 | 428_475 | 175.33333333333334 | 572.0 | Repeat | Note=WD 10 | |
Tgene | CIRH1A | chr16:68772314 | chr16:69177080 | ENST00000352319 | 4 | 14 | 476_516 | 175.33333333333334 | 572.0 | Repeat | Note=WD 11 | |
Tgene | CIRH1A | chr16:68772314 | chr16:69177080 | ENST00000352319 | 4 | 14 | 517_566 | 175.33333333333334 | 572.0 | Repeat | Note=WD 12 | |
Tgene | CIRH1A | chr16:68772314 | chr16:69177080 | ENST00000352319 | 4 | 14 | 567_627 | 175.33333333333334 | 572.0 | Repeat | Note=WD 13 | |
Tgene | CIRH1A | chr16:68772314 | chr16:69177080 | ENST00000352319 | 4 | 14 | 628_666 | 175.33333333333334 | 572.0 | Repeat | Note=WD 14 | |
Tgene | CIRH1A | chr16:68772314 | chr16:69177080 | ENST00000563094 | 4 | 15 | 182_226 | 175.33333333333334 | 626.0 | Repeat | Note=WD 5 | |
Tgene | CIRH1A | chr16:68772314 | chr16:69177080 | ENST00000563094 | 4 | 15 | 227_275 | 175.33333333333334 | 626.0 | Repeat | Note=WD 6 | |
Tgene | CIRH1A | chr16:68772314 | chr16:69177080 | ENST00000563094 | 4 | 15 | 276_317 | 175.33333333333334 | 626.0 | Repeat | Note=WD 7 | |
Tgene | CIRH1A | chr16:68772314 | chr16:69177080 | ENST00000563094 | 4 | 15 | 318_377 | 175.33333333333334 | 626.0 | Repeat | Note=WD 8 | |
Tgene | CIRH1A | chr16:68772314 | chr16:69177080 | ENST00000563094 | 4 | 15 | 378_427 | 175.33333333333334 | 626.0 | Repeat | Note=WD 9 | |
Tgene | CIRH1A | chr16:68772314 | chr16:69177080 | ENST00000563094 | 4 | 15 | 428_475 | 175.33333333333334 | 626.0 | Repeat | Note=WD 10 | |
Tgene | CIRH1A | chr16:68772314 | chr16:69177080 | ENST00000563094 | 4 | 15 | 476_516 | 175.33333333333334 | 626.0 | Repeat | Note=WD 11 | |
Tgene | CIRH1A | chr16:68772314 | chr16:69177080 | ENST00000563094 | 4 | 15 | 517_566 | 175.33333333333334 | 626.0 | Repeat | Note=WD 12 | |
Tgene | CIRH1A | chr16:68772314 | chr16:69177080 | ENST00000563094 | 4 | 15 | 567_627 | 175.33333333333334 | 626.0 | Repeat | Note=WD 13 | |
Tgene | CIRH1A | chr16:68772314 | chr16:69177080 | ENST00000563094 | 4 | 15 | 628_666 | 175.33333333333334 | 626.0 | Repeat | Note=WD 14 | |
Tgene | CIRH1A | chr16:68835796 | chr16:69170598 | ENST00000314423 | 1 | 17 | 136_181 | 53.0 | 687.0 | Repeat | Note=WD 4 | |
Tgene | CIRH1A | chr16:68835796 | chr16:69170598 | ENST00000314423 | 1 | 17 | 182_226 | 53.0 | 687.0 | Repeat | Note=WD 5 | |
Tgene | CIRH1A | chr16:68835796 | chr16:69170598 | ENST00000314423 | 1 | 17 | 227_275 | 53.0 | 687.0 | Repeat | Note=WD 6 | |
Tgene | CIRH1A | chr16:68835796 | chr16:69170598 | ENST00000314423 | 1 | 17 | 276_317 | 53.0 | 687.0 | Repeat | Note=WD 7 | |
Tgene | CIRH1A | chr16:68835796 | chr16:69170598 | ENST00000314423 | 1 | 17 | 318_377 | 53.0 | 687.0 | Repeat | Note=WD 8 | |
Tgene | CIRH1A | chr16:68835796 | chr16:69170598 | ENST00000314423 | 1 | 17 | 378_427 | 53.0 | 687.0 | Repeat | Note=WD 9 | |
Tgene | CIRH1A | chr16:68835796 | chr16:69170598 | ENST00000314423 | 1 | 17 | 428_475 | 53.0 | 687.0 | Repeat | Note=WD 10 | |
Tgene | CIRH1A | chr16:68835796 | chr16:69170598 | ENST00000314423 | 1 | 17 | 476_516 | 53.0 | 687.0 | Repeat | Note=WD 11 | |
Tgene | CIRH1A | chr16:68835796 | chr16:69170598 | ENST00000314423 | 1 | 17 | 517_566 | 53.0 | 687.0 | Repeat | Note=WD 12 | |
Tgene | CIRH1A | chr16:68835796 | chr16:69170598 | ENST00000314423 | 1 | 17 | 51_92 | 53.0 | 687.0 | Repeat | Note=WD 2 | |
Tgene | CIRH1A | chr16:68835796 | chr16:69170598 | ENST00000314423 | 1 | 17 | 567_627 | 53.0 | 687.0 | Repeat | Note=WD 13 | |
Tgene | CIRH1A | chr16:68835796 | chr16:69170598 | ENST00000314423 | 1 | 17 | 628_666 | 53.0 | 687.0 | Repeat | Note=WD 14 | |
Tgene | CIRH1A | chr16:68835796 | chr16:69170598 | ENST00000314423 | 1 | 17 | 93_135 | 53.0 | 687.0 | Repeat | Note=WD 3 | |
Tgene | CIRH1A | chr16:68835796 | chr16:69170598 | ENST00000352319 | 1 | 14 | 136_181 | 53.0 | 572.0 | Repeat | Note=WD 4 | |
Tgene | CIRH1A | chr16:68835796 | chr16:69170598 | ENST00000352319 | 1 | 14 | 182_226 | 53.0 | 572.0 | Repeat | Note=WD 5 | |
Tgene | CIRH1A | chr16:68835796 | chr16:69170598 | ENST00000352319 | 1 | 14 | 227_275 | 53.0 | 572.0 | Repeat | Note=WD 6 | |
Tgene | CIRH1A | chr16:68835796 | chr16:69170598 | ENST00000352319 | 1 | 14 | 276_317 | 53.0 | 572.0 | Repeat | Note=WD 7 | |
Tgene | CIRH1A | chr16:68835796 | chr16:69170598 | ENST00000352319 | 1 | 14 | 318_377 | 53.0 | 572.0 | Repeat | Note=WD 8 | |
Tgene | CIRH1A | chr16:68835796 | chr16:69170598 | ENST00000352319 | 1 | 14 | 378_427 | 53.0 | 572.0 | Repeat | Note=WD 9 | |
Tgene | CIRH1A | chr16:68835796 | chr16:69170598 | ENST00000352319 | 1 | 14 | 428_475 | 53.0 | 572.0 | Repeat | Note=WD 10 | |
Tgene | CIRH1A | chr16:68835796 | chr16:69170598 | ENST00000352319 | 1 | 14 | 476_516 | 53.0 | 572.0 | Repeat | Note=WD 11 | |
Tgene | CIRH1A | chr16:68835796 | chr16:69170598 | ENST00000352319 | 1 | 14 | 517_566 | 53.0 | 572.0 | Repeat | Note=WD 12 | |
Tgene | CIRH1A | chr16:68835796 | chr16:69170598 | ENST00000352319 | 1 | 14 | 51_92 | 53.0 | 572.0 | Repeat | Note=WD 2 | |
Tgene | CIRH1A | chr16:68835796 | chr16:69170598 | ENST00000352319 | 1 | 14 | 567_627 | 53.0 | 572.0 | Repeat | Note=WD 13 | |
Tgene | CIRH1A | chr16:68835796 | chr16:69170598 | ENST00000352319 | 1 | 14 | 628_666 | 53.0 | 572.0 | Repeat | Note=WD 14 | |
Tgene | CIRH1A | chr16:68835796 | chr16:69170598 | ENST00000352319 | 1 | 14 | 93_135 | 53.0 | 572.0 | Repeat | Note=WD 3 | |
Tgene | CIRH1A | chr16:68835796 | chr16:69170598 | ENST00000563094 | 1 | 15 | 136_181 | 53.0 | 626.0 | Repeat | Note=WD 4 | |
Tgene | CIRH1A | chr16:68835796 | chr16:69170598 | ENST00000563094 | 1 | 15 | 182_226 | 53.0 | 626.0 | Repeat | Note=WD 5 | |
Tgene | CIRH1A | chr16:68835796 | chr16:69170598 | ENST00000563094 | 1 | 15 | 227_275 | 53.0 | 626.0 | Repeat | Note=WD 6 | |
Tgene | CIRH1A | chr16:68835796 | chr16:69170598 | ENST00000563094 | 1 | 15 | 276_317 | 53.0 | 626.0 | Repeat | Note=WD 7 | |
Tgene | CIRH1A | chr16:68835796 | chr16:69170598 | ENST00000563094 | 1 | 15 | 318_377 | 53.0 | 626.0 | Repeat | Note=WD 8 | |
Tgene | CIRH1A | chr16:68835796 | chr16:69170598 | ENST00000563094 | 1 | 15 | 378_427 | 53.0 | 626.0 | Repeat | Note=WD 9 | |
Tgene | CIRH1A | chr16:68835796 | chr16:69170598 | ENST00000563094 | 1 | 15 | 428_475 | 53.0 | 626.0 | Repeat | Note=WD 10 | |
Tgene | CIRH1A | chr16:68835796 | chr16:69170598 | ENST00000563094 | 1 | 15 | 476_516 | 53.0 | 626.0 | Repeat | Note=WD 11 | |
Tgene | CIRH1A | chr16:68835796 | chr16:69170598 | ENST00000563094 | 1 | 15 | 517_566 | 53.0 | 626.0 | Repeat | Note=WD 12 | |
Tgene | CIRH1A | chr16:68835796 | chr16:69170598 | ENST00000563094 | 1 | 15 | 51_92 | 53.0 | 626.0 | Repeat | Note=WD 2 | |
Tgene | CIRH1A | chr16:68835796 | chr16:69170598 | ENST00000563094 | 1 | 15 | 567_627 | 53.0 | 626.0 | Repeat | Note=WD 13 | |
Tgene | CIRH1A | chr16:68835796 | chr16:69170598 | ENST00000563094 | 1 | 15 | 628_666 | 53.0 | 626.0 | Repeat | Note=WD 14 | |
Tgene | CIRH1A | chr16:68835796 | chr16:69170598 | ENST00000563094 | 1 | 15 | 93_135 | 53.0 | 626.0 | Repeat | Note=WD 3 |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | CDH1 | chr16:68772314 | chr16:69177080 | ENST00000261769 | + | 2 | 16 | 838_851 | 54.333333333333336 | 883.0 | Compositional bias | Note=Ser-rich |
Hgene | CDH1 | chr16:68835796 | chr16:69170598 | ENST00000261769 | + | 3 | 16 | 838_851 | 129.0 | 883.0 | Compositional bias | Note=Ser-rich |
Hgene | CDH1 | chr16:68772314 | chr16:69177080 | ENST00000261769 | + | 2 | 16 | 155_262 | 54.333333333333336 | 883.0 | Domain | Cadherin 1 |
Hgene | CDH1 | chr16:68772314 | chr16:69177080 | ENST00000261769 | + | 2 | 16 | 263_375 | 54.333333333333336 | 883.0 | Domain | Cadherin 2 |
Hgene | CDH1 | chr16:68772314 | chr16:69177080 | ENST00000261769 | + | 2 | 16 | 376_486 | 54.333333333333336 | 883.0 | Domain | Cadherin 3 |
Hgene | CDH1 | chr16:68772314 | chr16:69177080 | ENST00000261769 | + | 2 | 16 | 487_593 | 54.333333333333336 | 883.0 | Domain | Cadherin 4 |
Hgene | CDH1 | chr16:68772314 | chr16:69177080 | ENST00000261769 | + | 2 | 16 | 594_697 | 54.333333333333336 | 883.0 | Domain | Cadherin 5 |
Hgene | CDH1 | chr16:68835796 | chr16:69170598 | ENST00000261769 | + | 3 | 16 | 155_262 | 129.0 | 883.0 | Domain | Cadherin 1 |
Hgene | CDH1 | chr16:68835796 | chr16:69170598 | ENST00000261769 | + | 3 | 16 | 263_375 | 129.0 | 883.0 | Domain | Cadherin 2 |
Hgene | CDH1 | chr16:68835796 | chr16:69170598 | ENST00000261769 | + | 3 | 16 | 376_486 | 129.0 | 883.0 | Domain | Cadherin 3 |
Hgene | CDH1 | chr16:68835796 | chr16:69170598 | ENST00000261769 | + | 3 | 16 | 487_593 | 129.0 | 883.0 | Domain | Cadherin 4 |
Hgene | CDH1 | chr16:68835796 | chr16:69170598 | ENST00000261769 | + | 3 | 16 | 594_697 | 129.0 | 883.0 | Domain | Cadherin 5 |
Hgene | CDH1 | chr16:68772314 | chr16:69177080 | ENST00000261769 | + | 2 | 16 | 758_769 | 54.333333333333336 | 883.0 | Region | Note=Required for binding CTNND1 and PSEN1 |
Hgene | CDH1 | chr16:68772314 | chr16:69177080 | ENST00000261769 | + | 2 | 16 | 811_882 | 54.333333333333336 | 883.0 | Region | Note=Required for binding alpha%2C beta and gamma catenins |
Hgene | CDH1 | chr16:68835796 | chr16:69170598 | ENST00000261769 | + | 3 | 16 | 758_769 | 129.0 | 883.0 | Region | Note=Required for binding CTNND1 and PSEN1 |
Hgene | CDH1 | chr16:68835796 | chr16:69170598 | ENST00000261769 | + | 3 | 16 | 811_882 | 129.0 | 883.0 | Region | Note=Required for binding alpha%2C beta and gamma catenins |
Hgene | CDH1 | chr16:68772314 | chr16:69177080 | ENST00000261769 | + | 2 | 16 | 155_709 | 54.333333333333336 | 883.0 | Topological domain | Extracellular |
Hgene | CDH1 | chr16:68772314 | chr16:69177080 | ENST00000261769 | + | 2 | 16 | 731_882 | 54.333333333333336 | 883.0 | Topological domain | Cytoplasmic |
Hgene | CDH1 | chr16:68835796 | chr16:69170598 | ENST00000261769 | + | 3 | 16 | 155_709 | 129.0 | 883.0 | Topological domain | Extracellular |
Hgene | CDH1 | chr16:68835796 | chr16:69170598 | ENST00000261769 | + | 3 | 16 | 731_882 | 129.0 | 883.0 | Topological domain | Cytoplasmic |
Hgene | CDH1 | chr16:68772314 | chr16:69177080 | ENST00000261769 | + | 2 | 16 | 710_730 | 54.333333333333336 | 883.0 | Transmembrane | Helical |
Hgene | CDH1 | chr16:68835796 | chr16:69170598 | ENST00000261769 | + | 3 | 16 | 710_730 | 129.0 | 883.0 | Transmembrane | Helical |
Tgene | CIRH1A | chr16:68772314 | chr16:69177080 | ENST00000314423 | 4 | 17 | 136_181 | 175.33333333333334 | 687.0 | Repeat | Note=WD 4 | |
Tgene | CIRH1A | chr16:68772314 | chr16:69177080 | ENST00000314423 | 4 | 17 | 51_92 | 175.33333333333334 | 687.0 | Repeat | Note=WD 2 | |
Tgene | CIRH1A | chr16:68772314 | chr16:69177080 | ENST00000314423 | 4 | 17 | 7_50 | 175.33333333333334 | 687.0 | Repeat | Note=WD 1 | |
Tgene | CIRH1A | chr16:68772314 | chr16:69177080 | ENST00000314423 | 4 | 17 | 93_135 | 175.33333333333334 | 687.0 | Repeat | Note=WD 3 | |
Tgene | CIRH1A | chr16:68772314 | chr16:69177080 | ENST00000352319 | 4 | 14 | 136_181 | 175.33333333333334 | 572.0 | Repeat | Note=WD 4 | |
Tgene | CIRH1A | chr16:68772314 | chr16:69177080 | ENST00000352319 | 4 | 14 | 51_92 | 175.33333333333334 | 572.0 | Repeat | Note=WD 2 | |
Tgene | CIRH1A | chr16:68772314 | chr16:69177080 | ENST00000352319 | 4 | 14 | 7_50 | 175.33333333333334 | 572.0 | Repeat | Note=WD 1 | |
Tgene | CIRH1A | chr16:68772314 | chr16:69177080 | ENST00000352319 | 4 | 14 | 93_135 | 175.33333333333334 | 572.0 | Repeat | Note=WD 3 | |
Tgene | CIRH1A | chr16:68772314 | chr16:69177080 | ENST00000563094 | 4 | 15 | 136_181 | 175.33333333333334 | 626.0 | Repeat | Note=WD 4 | |
Tgene | CIRH1A | chr16:68772314 | chr16:69177080 | ENST00000563094 | 4 | 15 | 51_92 | 175.33333333333334 | 626.0 | Repeat | Note=WD 2 | |
Tgene | CIRH1A | chr16:68772314 | chr16:69177080 | ENST00000563094 | 4 | 15 | 7_50 | 175.33333333333334 | 626.0 | Repeat | Note=WD 1 | |
Tgene | CIRH1A | chr16:68772314 | chr16:69177080 | ENST00000563094 | 4 | 15 | 93_135 | 175.33333333333334 | 626.0 | Repeat | Note=WD 3 | |
Tgene | CIRH1A | chr16:68835796 | chr16:69170598 | ENST00000314423 | 1 | 17 | 7_50 | 53.0 | 687.0 | Repeat | Note=WD 1 | |
Tgene | CIRH1A | chr16:68835796 | chr16:69170598 | ENST00000352319 | 1 | 14 | 7_50 | 53.0 | 572.0 | Repeat | Note=WD 1 | |
Tgene | CIRH1A | chr16:68835796 | chr16:69170598 | ENST00000563094 | 1 | 15 | 7_50 | 53.0 | 626.0 | Repeat | Note=WD 1 |
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Fusion Gene Sequence for CDH1-CIRH1A |
For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones. |
>In-frame_ENST00000261769_ENST00000314423_TCGA-A7-A6VX_CDH1_chr16_68835796_+_CIRH1A_chr16_69170598_length(transcript)=2564nt_BP=578nt AGCCAATCAGCGGTACGGGGGGCGGTGCCTCCGGGGCTCACCTGGCTGCAGCCACGCACCCCCTCTCAGTGGCGTCGGAACTGCAAAGCA CCTGTGAGCTTGCGGAAGTCAGTTCAGACTCCAGCCCGCTCCAGCCCGGCCCGACCCGACCGCACCCGGCGCCTGCCCTCGCTCGGCGTC CCCGGCCAGCCATGGGCCCTTGGAGCCGCAGCCTCTCGGCGCTGCTGCTGCTGCTGCAGGTCTCCTCTTGGCTCTGCCAGGAGCCGGAGC CCTGCCACCCTGGCTTTGACGCCGAGAGCTACACGTTCACGGTGCCCCGGCGCCACCTGGAGAGAGGCCGCGTCCTGGGCAGAGTGAATT TTGAAGATTGCACCGGTCGACAAAGGACAGCCTATTTTTCCCTCGACACCCGATTCAAAGTGGGCACAGATGGTGTGATTACAGTCAAAA GGCCTCTACGGTTTCATAACCCACAGATCCATTTCTTGGTCTACGCCTGGGACTCCACCTACAGAAAGTTTTCCACCAAAGTCACGCTGA ATACAGTGGGGCACCACCACCGCCCCCCGCCCCATCAGTTTTTCCCAGGTCATGAGTCTCGGGCTACAGAAGCTTTGTGCTGGGCAGAAG GACAGCGACTCTTTAGTGCTGGGCTCAATGGCGAGATTATGGAGTATGATTTACAGGCGTTAAACATCAAGTATGCTATGGATGCCTTTG GAGGACCTATTTGGAGCATGGCTGCCAGCCCCAGTGGCTCTCAACTTTTGGTTGGTTGTGAAGATGGATCTGTGAAACTATTTCAAATTA CCCCAGACAAAATCCAGTTTGAAAGAAATTTTGATCGGCAGAAAAGTCGCATCCTGAGTCTCAGCTGGCATCCCTCTGGTACCCACATTG CAGCTGGTTCCATAGACTACATTAGTGTGTTTGATGTCAAATCAGGCAGCGCTGTTCATAAGATGATTGTGGACAGGCAGTATATGGGCG TGTCTAAGCGGAAGTGCATCGTGTGGGGTGTCGCCTTCTTGTCCGATGGCACTATCATAAGTGTGGACTCTGCTGGGAAGGTGCAGTTCT GGGACTCAGCCACTGGGACGCTTGTGAAGAGCCATCTCATCGCTAATGCTGACGTGCAGTCCATTGCTGTAGCTGACCAAGAAGACAGTT TCGTGGTGGGCACAGCCGAGGGAACAGTCTTCCATTTTCAGCTGGTCCCTGTGACATCTAACAGCAGTGAGAAGCAGTGGGTGCGGACAA AACCGTTCCAGCATCACACTCATGACGTGCGCACTGTGGCCCACAGCCCAACAGCGCTGATATCTGGAGGCACTGACACCCACTTAGTCT TTCGTCCTCTCATGGAGAAGGTGGAAGTAAAGAATTACGATGCCGCTCTCCGAAAAATCACCTTTCCCCACCGATGTCTCATCTCCTGTT CTAAAAAGAGGCAGCTTCTCCTCTTCCAGTTTGCTCATCACTTAGAACTTTGGCGACTGGGATCCACAGTTGCAACAGGCAAGAATGGGG ATACTCTTCCACTCTCTAAAAATGCAGATCATTTACTGCACCTAAAGACAAAGGGTCCTGAGAACATTATCTGTAGCTGTATCTCCCCAT GTGGAAGTTGGATAGCCTATTCTACAGTTTCTCGGTTTTTTCTCTATCGGCTGAATTATGAACATGACAACATAAGCCTCAAAAGGGTTT CCAAAATGCCAGCATTCCTTCGCTCTGCCCTTCAGATTTTGTTTTCTGAAGATTCAACAAAGCTCTTTGTAGCATCAAATCAAGGAGCTC TGCATATTGTTCAGCTGTCAGGAGGAAGCTTCAAGCACCTGCATGCTTTCCAGCCTCAGTCAGGAACAGTGGAGGCCATGTGTCTTTTGG CAGTCAGTCCAGATGGGAATTGGCTAGCTGCATCAGGTACCAGTGCTGGAGTCCATGTCTACAACGTAAAACAGCTAAAGCTTCACTGCA CGGTGCCTGCTTACAATTTCCCAGTGACTGCTATGGCTATTGCCCCCAATACCAACAACCTTGTCATCGCTCATTCGGACCAGCAGGTAT TTGAGTACAGCATCCCAGACAAACAGTATACAGATTGGAGCCGGACTGTCCAGAAGCAGGGCTTTCACCACCTTTGGCTCCAAAGGGATA CTCCTATCACACACATCAGTTTTCATCCCAAGAGACCGATGCACATCCTTCTCCATGATGCCTACATGTTCTGCATCATTGACAAGTCAT TGCCCCTTCCAAATGACAAAACCTTACTCTACAATCCATTTCCTCCCACGAATGAATCAGATGTCATCCGGAGGCGCACAGCTCATGCTT TTAAAATTTCTAAGATATATAAGCCTCTACTCTTCATGGATCTTTTGGATGAAAGAACACTCGTGGCAGTAGAACGGCCTCTGGATGACA TCATTGCTCAGCTCCCACCACCCATTAAAAAGAAGAAATTTGGAACCTAAAACAGGGCACTGTCTGTGTCCTTCCTTGAACTGTCTACCC >In-frame_ENST00000261769_ENST00000314423_TCGA-A7-A6VX_CDH1_chr16_68835796_+_CIRH1A_chr16_69170598_length(amino acids)=812AA_start in transcript=41_stop in transcript=2479 MAAATHPLSVASELQSTCELAEVSSDSSPLQPGPTRPHPAPALARRPRPAMGPWSRSLSALLLLLQVSSWLCQEPEPCHPGFDAESYTFT VPRRHLERGRVLGRVNFEDCTGRQRTAYFSLDTRFKVGTDGVITVKRPLRFHNPQIHFLVYAWDSTYRKFSTKVTLNTVGHHHRPPPHQF FPGHESRATEALCWAEGQRLFSAGLNGEIMEYDLQALNIKYAMDAFGGPIWSMAASPSGSQLLVGCEDGSVKLFQITPDKIQFERNFDRQ KSRILSLSWHPSGTHIAAGSIDYISVFDVKSGSAVHKMIVDRQYMGVSKRKCIVWGVAFLSDGTIISVDSAGKVQFWDSATGTLVKSHLI ANADVQSIAVADQEDSFVVGTAEGTVFHFQLVPVTSNSSEKQWVRTKPFQHHTHDVRTVAHSPTALISGGTDTHLVFRPLMEKVEVKNYD AALRKITFPHRCLISCSKKRQLLLFQFAHHLELWRLGSTVATGKNGDTLPLSKNADHLLHLKTKGPENIICSCISPCGSWIAYSTVSRFF LYRLNYEHDNISLKRVSKMPAFLRSALQILFSEDSTKLFVASNQGALHIVQLSGGSFKHLHAFQPQSGTVEAMCLLAVSPDGNWLAASGT SAGVHVYNVKQLKLHCTVPAYNFPVTAMAIAPNTNNLVIAHSDQQVFEYSIPDKQYTDWSRTVQKQGFHHLWLQRDTPITHISFHPKRPM HILLHDAYMFCIIDKSLPLPNDKTLLYNPFPPTNESDVIRRRTAHAFKISKIYKPLLFMDLLDERTLVAVERPLDDIIAQLPPPIKKKKF -------------------------------------------------------------- >In-frame_ENST00000261769_ENST00000352319_TCGA-A7-A6VX_CDH1_chr16_68835796_+_CIRH1A_chr16_69170598_length(transcript)=2218nt_BP=578nt AGCCAATCAGCGGTACGGGGGGCGGTGCCTCCGGGGCTCACCTGGCTGCAGCCACGCACCCCCTCTCAGTGGCGTCGGAACTGCAAAGCA CCTGTGAGCTTGCGGAAGTCAGTTCAGACTCCAGCCCGCTCCAGCCCGGCCCGACCCGACCGCACCCGGCGCCTGCCCTCGCTCGGCGTC CCCGGCCAGCCATGGGCCCTTGGAGCCGCAGCCTCTCGGCGCTGCTGCTGCTGCTGCAGGTCTCCTCTTGGCTCTGCCAGGAGCCGGAGC CCTGCCACCCTGGCTTTGACGCCGAGAGCTACACGTTCACGGTGCCCCGGCGCCACCTGGAGAGAGGCCGCGTCCTGGGCAGAGTGAATT TTGAAGATTGCACCGGTCGACAAAGGACAGCCTATTTTTCCCTCGACACCCGATTCAAAGTGGGCACAGATGGTGTGATTACAGTCAAAA GGCCTCTACGGTTTCATAACCCACAGATCCATTTCTTGGTCTACGCCTGGGACTCCACCTACAGAAAGTTTTCCACCAAAGTCACGCTGA ATACAGTGGGGCACCACCACCGCCCCCCGCCCCATCAGTTTTTCCCAGGTCATGAGTCTCGGGCTACAGAAGCTTTGTGCTGGGCAGAAG GACAGCGACTCTTTAGTGCTGGGCTCAATGGCGAGATTATGGAGTATGATTTACAGGCGTTAAACATCAAGTATGCTATGGATGCCTTTG GAGGACCTATTTGGAGCATGGCTGCCAGCCCCAGTGGCTCTCAACTTTTGGTTGGTTGTGAAGATGGATCTGTGAAACTATTTCAAATTA CCCCAGACAAAATCCAGTTTGAAAGAAATTTTGATCGGCAGAAAAGTCGCATCCTGAGTCTCAGCTGGCATCCCTCTGGTACCCACATTG CAGCTGGTTCCATAGACTACATTAGTGTGTTTGATGTCAAATCAGGCAGCGCTGTTCATAAGATGATTGTGGACAGGCAGTATATGGGCG TGTCTAAGCGGAAGTGCATCGTGTGGGGTGTCGCCTTCTTGTCCGATGGCACTATCATAAGTGTGGACTCTGCTGGGAAGGTGCAGTTCT GGGACTCAGCCACTGGGACGCTTGTGAAGAGCCATCTCATCGCTAATGCTGACGTGCAGTCCATTGCTGTAGCTGACCAAGAAGACAGTT TCGTGGTGGGCACAGCCGAGGGAACAGTCTTCCATTTTCAGCTGGTCCCTGTGACATCTAACAGCAGTGAGAAGCAGTGGGTGCGGACAA AACCGTTCCAGCATCACACTCATGACGTGCGCACTGTGGCCCACAGCCCAACAGCGCTGATATCTGGAGGCACTGACACCCACTTAGTCT TTCGTCCTCTCATGGAGAAGGTGGAAGTAAAGAATTACGATGCCGCTCTCCGAAAAATCACCTTTCCCCACCGATGTCTCATCTCCTGTT CTAAAAAGAGGCAGCTTCTCCTCTTCCAGTTTGCTCATCACTTAGAACTTTGGCGACTGGGATCCACAGTTGCAACAGGAACAGTGGAGG CCATGTGTCTTTTGGCAGTCAGTCCAGATGGGAATTGGCTAGCTGCATCAGGTACCAGTGCTGGAGTCCATGTCTACAACGTAAAACAGC TAAAGCTTCACTGCACGGTGCCTGCTTACAATTTCCCAGTGACTGCTATGGCTATTGCCCCCAATACCAACAACCTTGTCATCGCTCATT CGGACCAGCAGGTATTTGAGTACAGCATCCCAGACAAACAGTATACAGATTGGAGCCGGACTGTCCAGAAGCAGGGCTTTCACCACCTTT GGCTCCAAAGGGATACTCCTATCACACACATCAGTTTTCATCCCAAGAGACCGATGCACATCCTTCTCCATGATGCCTACATGTTCTGCA TCATTGACAAGTCATTGCCCCTTCCAAATGACAAAACCTTACTCTACAATCCATTTCCTCCCACGAATGAATCAGATGTCATCCGGAGGC GCACAGCTCATGCTTTTAAAATTTCTAAGATATATAAGCCTCTACTCTTCATGGATCTTTTGGATGAAAGAACACTCGTGGCAGTAGAAC GGCCTCTGGATGACATCATTGCTCAGCTCCCACCACCCATTAAAAAGAAGAAATTTGGAACCTAAAACAGGGCACTGTCTGTGTCCTTCC >In-frame_ENST00000261769_ENST00000352319_TCGA-A7-A6VX_CDH1_chr16_68835796_+_CIRH1A_chr16_69170598_length(amino acids)=697AA_start in transcript=41_stop in transcript=2134 MAAATHPLSVASELQSTCELAEVSSDSSPLQPGPTRPHPAPALARRPRPAMGPWSRSLSALLLLLQVSSWLCQEPEPCHPGFDAESYTFT VPRRHLERGRVLGRVNFEDCTGRQRTAYFSLDTRFKVGTDGVITVKRPLRFHNPQIHFLVYAWDSTYRKFSTKVTLNTVGHHHRPPPHQF FPGHESRATEALCWAEGQRLFSAGLNGEIMEYDLQALNIKYAMDAFGGPIWSMAASPSGSQLLVGCEDGSVKLFQITPDKIQFERNFDRQ KSRILSLSWHPSGTHIAAGSIDYISVFDVKSGSAVHKMIVDRQYMGVSKRKCIVWGVAFLSDGTIISVDSAGKVQFWDSATGTLVKSHLI ANADVQSIAVADQEDSFVVGTAEGTVFHFQLVPVTSNSSEKQWVRTKPFQHHTHDVRTVAHSPTALISGGTDTHLVFRPLMEKVEVKNYD AALRKITFPHRCLISCSKKRQLLLFQFAHHLELWRLGSTVATGTVEAMCLLAVSPDGNWLAASGTSAGVHVYNVKQLKLHCTVPAYNFPV TAMAIAPNTNNLVIAHSDQQVFEYSIPDKQYTDWSRTVQKQGFHHLWLQRDTPITHISFHPKRPMHILLHDAYMFCIIDKSLPLPNDKTL -------------------------------------------------------------- >In-frame_ENST00000261769_ENST00000563094_TCGA-A7-A6VX_CDH1_chr16_68835796_+_CIRH1A_chr16_69170598_length(transcript)=4568nt_BP=578nt AGCCAATCAGCGGTACGGGGGGCGGTGCCTCCGGGGCTCACCTGGCTGCAGCCACGCACCCCCTCTCAGTGGCGTCGGAACTGCAAAGCA CCTGTGAGCTTGCGGAAGTCAGTTCAGACTCCAGCCCGCTCCAGCCCGGCCCGACCCGACCGCACCCGGCGCCTGCCCTCGCTCGGCGTC CCCGGCCAGCCATGGGCCCTTGGAGCCGCAGCCTCTCGGCGCTGCTGCTGCTGCTGCAGGTCTCCTCTTGGCTCTGCCAGGAGCCGGAGC CCTGCCACCCTGGCTTTGACGCCGAGAGCTACACGTTCACGGTGCCCCGGCGCCACCTGGAGAGAGGCCGCGTCCTGGGCAGAGTGAATT TTGAAGATTGCACCGGTCGACAAAGGACAGCCTATTTTTCCCTCGACACCCGATTCAAAGTGGGCACAGATGGTGTGATTACAGTCAAAA GGCCTCTACGGTTTCATAACCCACAGATCCATTTCTTGGTCTACGCCTGGGACTCCACCTACAGAAAGTTTTCCACCAAAGTCACGCTGA ATACAGTGGGGCACCACCACCGCCCCCCGCCCCATCAGTTTTTCCCAGGTCATGAGTCTCGGGCTACAGAAGCTTTGTGCTGGGCAGAAG GACAGCGACTCTTTAGTGCTGGGCTCAATGGCGAGATTATGGAGTATGATTTACAGGCGTTAAACATCAAGTATGCTATGGATGCCTTTG GAGGACCTATTTGGAGCATGGCTGCCAGCCCCAGTGGCTCTCAACTTTTGGTTGGTTGTGAAGATGGATCTGTGAAACTATTTCAAATTA CCCCAGACAAAATCCAGTTTGAAAGAAATTTTGATCGGCAGAAAAGTCGCATCCTGAGTCTCAGCTGGCATCCCTCTGGTACCCACATTG CAGCTGGTTCCATAGACTACATTAGTGTGTTTGATGTCAAATCAGGCAGCGCTGTTCATAAGATGATTGTGGACAGGCAGTATATGGGCG TGTCTAAGCGGAAGTGCATCGTGTGGGGTGTCGCCTTCTTGTCCGATGGCACTATCATAAGTGTGGACTCTGCTGGGAAGGTGCAGTTCT GGGACTCAGCCACTGGGACGCTTGTGAAGAGCCATCTCATCGCTAATGCTGACGTGCAGTCCATTGCTGTAGCTGACCAAGAAGACAGTT TCGTGGTGGGCACAGCCGAGGGAACAGTCTTCCATTTTCAGCTGGTCCCTGTGACATCTAACAGCAGTGAGAAGCAGTGGGTGCGGACAA AACCGTTCCAGCATCACACTCATGACGTGCGCACTGTGGCCCACAGCCCAACAGCGCTGATATCTGGAGGCACTGACACCCACTTAGTCT TTCGTCCTCTCATGGAGAAGGTGGAAGTAAAGAATTACGATGCCGCTCTCCGAAAAATCACCTTTCCCCACCGATGTCTCATCTCCTGTT CTAAAAAGAGGCAGCTTCTCCTCTTCCAGTTTGCTCATCACTTAGAACTTTGGCGACTGGGATCCACAGTTGCAACAGGCAAGAATGGGG ATACTCTTCCACTCTCTAAAAATGCAGATCATTTACTGCACCTAAAGACAAAGGGTCCTGAGAACATTATCTGTAGCTGTATCTCCCCAT GTGGAAGTTGGATAGCCTATTCTACAGTTTCTCGGTTTTTTCTCTATCGGCTGAATTATGAACATGACAACATAAGCCTCAAAAGGGTTT CCAAAATGCCAGCATTCCTTCGCTCTGCCCTTCAGATTTTGTTTTCTGAAGATTCAACAAAGCTCTTTGTAGCATCAAATCAAGGAGCTC TGCATATTGTTCAGCTGTCAGGAGGAAGCTTCAAGCACCTGCATGCTTTCCAGCCTCAGTCAGGAACAGTGGAGGCCATGTGTCTTTTGG CAGTCAGTCCAGATGGGAATTGGCTAGCTGCATCAGGTACCAGTGCTGGAGTCCATGTCTACAACGTAAAACAGCTAAAGCTTCACTGCA CGGTGCCTGCTTACAATTTCCCAGTGACTGCTATGGCTATTGCCCCCAATACCAACAACCTTGTCATCGCTCATTCGGACCAGCAGGTAT TTGAGTACAGCATCCCAGACAAACAGTATACAGATTGGAGCCGGACTGTCCAGAAGCAGGGCTTTCACCACCTTTGGCTCCAAAGGGATA CTCCTATCACACACATCAGTTTTCATCCCAAGAGACCGATGCACATCCTTCTCCATGATGCCTACATGTTCTGCATCATTGACAAGTCAT TGGTGAGTTCTTCACTGCTACCTCCCAAATCTTCTTCTGAATCTTAAAGTTCTAAAAGCAACAAGTACAATAAGGTAAGAGGACAGAGAC TCAGAATAAAGGTAGCTAGTAAATCAGAATACAGGTAGCTAGTACATTTCTTGGAGGAGAGGGGCTTTTGTTTTACAGATTCCCTGGTTT GTGTTCCCACAGTTCTTCGGGAGGCTCTCGGGGAAGGGGCTGGCCTTTGTATACTGGCTTTTGCTGATTTGACTATTTGTCTACTTTGCG AGTAAGCACATAAATCTTACACAGAAAAGTGATTAGGCCAGTATTCGGAAGGTGACCCTCATCCGGAAGTATCATTGATTTGGCTAACTT GCTTTCAACTTTGAACTCTGGGGTATCTGAATAACCTGGTTTCATTAAAGGAGGTACAGGCTGAGGTTTTGACCTCTGTGCCCCTTCGCT AAAGCTACTAAAACGCTGTCTGCAGGCTTGAGGAACTGGTCTTAACATCTTCGAAAAACCCAGCTAGGAAAATTCTTCATGGCTGTGATT TACATGGGATACGAGCATTTTCTTCAGTTTTAGATTCTGTCCTCTTTGCCAGCTGCTGTTTTGATTCACCCTGAATTTGTATGGCTTTTC TGGGCAGGTGCTTTGTTTCCTAGGAGCATTGTGGCCATGCCTGTCCTGCACTTTGGGCTTAGATTACAACCATCACACGGTGTTTTGGTG TGTTTGTGAAGGTGGGGGTGGAAGGAACATGGGGGAAAGCAGCAGATGGCTCTAAAGGAGGTGTGCACGGGGATGTGTCACTGGAATCAT CTCGTGGGCCCTGCGACCTCTGGGTGTGGGAAGCAGAGCTGGCTGACAAGTGCCTTCTGCAAGATGAGTGATACAGGAAGGGCCCCTCCC ACTCTCTTGCCTCTTTGTAATTGAGCCCAGATCATTTTTTCCAAAGCATTGGCTTTAAGTTCATCGCTTCCTTACAGTAGGCATAGCTAT TTCCCAGGAAGTCAGAGACAAAATATCATTTCTTTGGCCAGAGGCCACCTCGAGGTGTCAGTGACATCAGCACAGGTGGTTTGTGTTGAG GTTTCGCCTGGGGAGAACTCCAGTCACTTGTCCAGTCTGTGATCTGGTTGGGGGAGAGTCTAGAAAGCACAGACCCTGTGTGGGCTGAGC TCCTGCACTTGCCAGTTTGTTCCATTCTGACAAAGTGATACTGATGAGACAGGCCAGAAGCCGCAGAAGGGCCCTTTGATCTTGCTGCAT GGAGTTAACAAGCTCTCTTTGCCTCATACACCCACCCTCTACAGTGTGGCTGCAAGAGTAGCTTCAGCTCTTTCTCCCTCTCTCTCCTTT TCTTCTTTTTTTCCCCCCTAGTTTTTCTGAATAGAGGTATTATGGCTACAGCTGTTTTCCCGAATTAACGAATGTCAGGGAGGTACTGAA TATATATGATGGTTAGAAGATGATGTTGGGCTCAAAATGCACTACAGATCTTTGGTCTGCAGAAGCCCAATAAAAGTAACCATTTAAACA ATGTGTCTTTGTTTTTTTAGCCCCTTCCAAATGACAAAACCTTACTCTACAATCCATTTCCTCCCACGAATGAATCAGATGTCATCCGGA GGCGCACAGCTCATGCTTTTAAAATTTCTAAGATATATAAGGTAAAACATCTTGTGTTGTTATTCTGGATAGTTGGTTCCTTTGTGATAC CAAAATGTAATAAACTCCACAATCGGAAGATAAGAGCACCTTCAGTTTCCATGCAGAGAACCTGGCTTGTGGGAGACAAGTCACCTTTTT GAGGCTGGCTGTCCCTTGTATATGTTTTATTGTTCTTGCCTTAGTAGGTTAGAGGCAGGCACATCATACTTAACCAAAATGAAATGCGTA AGTAGTGAGAAATGTTGGCGCTGAGGGTAGAGTCTTTGTTGTCATGAGAGCTGGCTTTAAATTTTACTTGTTGGAGTGTTCCATAGGATA AATGTCAAGCAGGCTGGGCTTGGTAGCTCATACCTGTAATCCCAGCACTTTGGGAGGCCAAGGCAGGTGGATCTCCTCAGCCCAGGAATT CAAAACCAGCCTGGGCACCATGGTGAAACCCCATCACTATTAACAAAAAAAAAAAAAGGAGAGTTCTGTAAATTACTGATTACTCAAATG ACTCAAATGTGATTAGCTTCTTGATGCATTTGTAGCTTGCCAGTTGTCAGTTGCCTTAGGCTGGGTATGGTGATTCACGCCTGTAATCTC >In-frame_ENST00000261769_ENST00000563094_TCGA-A7-A6VX_CDH1_chr16_68835796_+_CIRH1A_chr16_69170598_length(amino acids)=751AA_start in transcript=41_stop in transcript=2296 MAAATHPLSVASELQSTCELAEVSSDSSPLQPGPTRPHPAPALARRPRPAMGPWSRSLSALLLLLQVSSWLCQEPEPCHPGFDAESYTFT VPRRHLERGRVLGRVNFEDCTGRQRTAYFSLDTRFKVGTDGVITVKRPLRFHNPQIHFLVYAWDSTYRKFSTKVTLNTVGHHHRPPPHQF FPGHESRATEALCWAEGQRLFSAGLNGEIMEYDLQALNIKYAMDAFGGPIWSMAASPSGSQLLVGCEDGSVKLFQITPDKIQFERNFDRQ KSRILSLSWHPSGTHIAAGSIDYISVFDVKSGSAVHKMIVDRQYMGVSKRKCIVWGVAFLSDGTIISVDSAGKVQFWDSATGTLVKSHLI ANADVQSIAVADQEDSFVVGTAEGTVFHFQLVPVTSNSSEKQWVRTKPFQHHTHDVRTVAHSPTALISGGTDTHLVFRPLMEKVEVKNYD AALRKITFPHRCLISCSKKRQLLLFQFAHHLELWRLGSTVATGKNGDTLPLSKNADHLLHLKTKGPENIICSCISPCGSWIAYSTVSRFF LYRLNYEHDNISLKRVSKMPAFLRSALQILFSEDSTKLFVASNQGALHIVQLSGGSFKHLHAFQPQSGTVEAMCLLAVSPDGNWLAASGT SAGVHVYNVKQLKLHCTVPAYNFPVTAMAIAPNTNNLVIAHSDQQVFEYSIPDKQYTDWSRTVQKQGFHHLWLQRDTPITHISFHPKRPM -------------------------------------------------------------- >In-frame_ENST00000422392_ENST00000314423_TCGA-A7-A6VX_CDH1_chr16_68835796_+_CIRH1A_chr16_69170598_length(transcript)=2437nt_BP=451nt GCTCCAGCCCGGCCCGACCCGACCGCACCCGGCGCCTGCCCTCGCTCGGCGTCCCCGGCCAGCCATGGGCCCTTGGAGCCGCAGCCTCTC GGCGCTGCTGCTGCTGCTGCAGGTCTCCTCTTGGCTCTGCCAGGAGCCGGAGCCCTGCCACCCTGGCTTTGACGCCGAGAGCTACACGTT CACGGTGCCCCGGCGCCACCTGGAGAGAGGCCGCGTCCTGGGCAGAGTGAATTTTGAAGATTGCACCGGTCGACAAAGGACAGCCTATTT TTCCCTCGACACCCGATTCAAAGTGGGCACAGATGGTGTGATTACAGTCAAAAGGCCTCTACGGTTTCATAACCCACAGATCCATTTCTT GGTCTACGCCTGGGACTCCACCTACAGAAAGTTTTCCACCAAAGTCACGCTGAATACAGTGGGGCACCACCACCGCCCCCCGCCCCATCA GTTTTTCCCAGGTCATGAGTCTCGGGCTACAGAAGCTTTGTGCTGGGCAGAAGGACAGCGACTCTTTAGTGCTGGGCTCAATGGCGAGAT TATGGAGTATGATTTACAGGCGTTAAACATCAAGTATGCTATGGATGCCTTTGGAGGACCTATTTGGAGCATGGCTGCCAGCCCCAGTGG CTCTCAACTTTTGGTTGGTTGTGAAGATGGATCTGTGAAACTATTTCAAATTACCCCAGACAAAATCCAGTTTGAAAGAAATTTTGATCG GCAGAAAAGTCGCATCCTGAGTCTCAGCTGGCATCCCTCTGGTACCCACATTGCAGCTGGTTCCATAGACTACATTAGTGTGTTTGATGT CAAATCAGGCAGCGCTGTTCATAAGATGATTGTGGACAGGCAGTATATGGGCGTGTCTAAGCGGAAGTGCATCGTGTGGGGTGTCGCCTT CTTGTCCGATGGCACTATCATAAGTGTGGACTCTGCTGGGAAGGTGCAGTTCTGGGACTCAGCCACTGGGACGCTTGTGAAGAGCCATCT CATCGCTAATGCTGACGTGCAGTCCATTGCTGTAGCTGACCAAGAAGACAGTTTCGTGGTGGGCACAGCCGAGGGAACAGTCTTCCATTT TCAGCTGGTCCCTGTGACATCTAACAGCAGTGAGAAGCAGTGGGTGCGGACAAAACCGTTCCAGCATCACACTCATGACGTGCGCACTGT GGCCCACAGCCCAACAGCGCTGATATCTGGAGGCACTGACACCCACTTAGTCTTTCGTCCTCTCATGGAGAAGGTGGAAGTAAAGAATTA CGATGCCGCTCTCCGAAAAATCACCTTTCCCCACCGATGTCTCATCTCCTGTTCTAAAAAGAGGCAGCTTCTCCTCTTCCAGTTTGCTCA TCACTTAGAACTTTGGCGACTGGGATCCACAGTTGCAACAGGCAAGAATGGGGATACTCTTCCACTCTCTAAAAATGCAGATCATTTACT GCACCTAAAGACAAAGGGTCCTGAGAACATTATCTGTAGCTGTATCTCCCCATGTGGAAGTTGGATAGCCTATTCTACAGTTTCTCGGTT TTTTCTCTATCGGCTGAATTATGAACATGACAACATAAGCCTCAAAAGGGTTTCCAAAATGCCAGCATTCCTTCGCTCTGCCCTTCAGAT TTTGTTTTCTGAAGATTCAACAAAGCTCTTTGTAGCATCAAATCAAGGAGCTCTGCATATTGTTCAGCTGTCAGGAGGAAGCTTCAAGCA CCTGCATGCTTTCCAGCCTCAGTCAGGAACAGTGGAGGCCATGTGTCTTTTGGCAGTCAGTCCAGATGGGAATTGGCTAGCTGCATCAGG TACCAGTGCTGGAGTCCATGTCTACAACGTAAAACAGCTAAAGCTTCACTGCACGGTGCCTGCTTACAATTTCCCAGTGACTGCTATGGC TATTGCCCCCAATACCAACAACCTTGTCATCGCTCATTCGGACCAGCAGGTATTTGAGTACAGCATCCCAGACAAACAGTATACAGATTG GAGCCGGACTGTCCAGAAGCAGGGCTTTCACCACCTTTGGCTCCAAAGGGATACTCCTATCACACACATCAGTTTTCATCCCAAGAGACC GATGCACATCCTTCTCCATGATGCCTACATGTTCTGCATCATTGACAAGTCATTGCCCCTTCCAAATGACAAAACCTTACTCTACAATCC ATTTCCTCCCACGAATGAATCAGATGTCATCCGGAGGCGCACAGCTCATGCTTTTAAAATTTCTAAGATATATAAGCCTCTACTCTTCAT GGATCTTTTGGATGAAAGAACACTCGTGGCAGTAGAACGGCCTCTGGATGACATCATTGCTCAGCTCCCACCACCCATTAAAAAGAAGAA ATTTGGAACCTAAAACAGGGCACTGTCTGTGTCCTTCCTTGAACTGTCTACCCTGTTGCTTTTCACAAATCATGGTAATAAAACAAGTTA >In-frame_ENST00000422392_ENST00000314423_TCGA-A7-A6VX_CDH1_chr16_68835796_+_CIRH1A_chr16_69170598_length(amino acids)=762AA_start in transcript=64_stop in transcript=2352 MGPWSRSLSALLLLLQVSSWLCQEPEPCHPGFDAESYTFTVPRRHLERGRVLGRVNFEDCTGRQRTAYFSLDTRFKVGTDGVITVKRPLR FHNPQIHFLVYAWDSTYRKFSTKVTLNTVGHHHRPPPHQFFPGHESRATEALCWAEGQRLFSAGLNGEIMEYDLQALNIKYAMDAFGGPI WSMAASPSGSQLLVGCEDGSVKLFQITPDKIQFERNFDRQKSRILSLSWHPSGTHIAAGSIDYISVFDVKSGSAVHKMIVDRQYMGVSKR KCIVWGVAFLSDGTIISVDSAGKVQFWDSATGTLVKSHLIANADVQSIAVADQEDSFVVGTAEGTVFHFQLVPVTSNSSEKQWVRTKPFQ HHTHDVRTVAHSPTALISGGTDTHLVFRPLMEKVEVKNYDAALRKITFPHRCLISCSKKRQLLLFQFAHHLELWRLGSTVATGKNGDTLP LSKNADHLLHLKTKGPENIICSCISPCGSWIAYSTVSRFFLYRLNYEHDNISLKRVSKMPAFLRSALQILFSEDSTKLFVASNQGALHIV QLSGGSFKHLHAFQPQSGTVEAMCLLAVSPDGNWLAASGTSAGVHVYNVKQLKLHCTVPAYNFPVTAMAIAPNTNNLVIAHSDQQVFEYS IPDKQYTDWSRTVQKQGFHHLWLQRDTPITHISFHPKRPMHILLHDAYMFCIIDKSLPLPNDKTLLYNPFPPTNESDVIRRRTAHAFKIS -------------------------------------------------------------- >In-frame_ENST00000422392_ENST00000352319_TCGA-A7-A6VX_CDH1_chr16_68835796_+_CIRH1A_chr16_69170598_length(transcript)=2091nt_BP=451nt GCTCCAGCCCGGCCCGACCCGACCGCACCCGGCGCCTGCCCTCGCTCGGCGTCCCCGGCCAGCCATGGGCCCTTGGAGCCGCAGCCTCTC GGCGCTGCTGCTGCTGCTGCAGGTCTCCTCTTGGCTCTGCCAGGAGCCGGAGCCCTGCCACCCTGGCTTTGACGCCGAGAGCTACACGTT CACGGTGCCCCGGCGCCACCTGGAGAGAGGCCGCGTCCTGGGCAGAGTGAATTTTGAAGATTGCACCGGTCGACAAAGGACAGCCTATTT TTCCCTCGACACCCGATTCAAAGTGGGCACAGATGGTGTGATTACAGTCAAAAGGCCTCTACGGTTTCATAACCCACAGATCCATTTCTT GGTCTACGCCTGGGACTCCACCTACAGAAAGTTTTCCACCAAAGTCACGCTGAATACAGTGGGGCACCACCACCGCCCCCCGCCCCATCA GTTTTTCCCAGGTCATGAGTCTCGGGCTACAGAAGCTTTGTGCTGGGCAGAAGGACAGCGACTCTTTAGTGCTGGGCTCAATGGCGAGAT TATGGAGTATGATTTACAGGCGTTAAACATCAAGTATGCTATGGATGCCTTTGGAGGACCTATTTGGAGCATGGCTGCCAGCCCCAGTGG CTCTCAACTTTTGGTTGGTTGTGAAGATGGATCTGTGAAACTATTTCAAATTACCCCAGACAAAATCCAGTTTGAAAGAAATTTTGATCG GCAGAAAAGTCGCATCCTGAGTCTCAGCTGGCATCCCTCTGGTACCCACATTGCAGCTGGTTCCATAGACTACATTAGTGTGTTTGATGT CAAATCAGGCAGCGCTGTTCATAAGATGATTGTGGACAGGCAGTATATGGGCGTGTCTAAGCGGAAGTGCATCGTGTGGGGTGTCGCCTT CTTGTCCGATGGCACTATCATAAGTGTGGACTCTGCTGGGAAGGTGCAGTTCTGGGACTCAGCCACTGGGACGCTTGTGAAGAGCCATCT CATCGCTAATGCTGACGTGCAGTCCATTGCTGTAGCTGACCAAGAAGACAGTTTCGTGGTGGGCACAGCCGAGGGAACAGTCTTCCATTT TCAGCTGGTCCCTGTGACATCTAACAGCAGTGAGAAGCAGTGGGTGCGGACAAAACCGTTCCAGCATCACACTCATGACGTGCGCACTGT GGCCCACAGCCCAACAGCGCTGATATCTGGAGGCACTGACACCCACTTAGTCTTTCGTCCTCTCATGGAGAAGGTGGAAGTAAAGAATTA CGATGCCGCTCTCCGAAAAATCACCTTTCCCCACCGATGTCTCATCTCCTGTTCTAAAAAGAGGCAGCTTCTCCTCTTCCAGTTTGCTCA TCACTTAGAACTTTGGCGACTGGGATCCACAGTTGCAACAGGAACAGTGGAGGCCATGTGTCTTTTGGCAGTCAGTCCAGATGGGAATTG GCTAGCTGCATCAGGTACCAGTGCTGGAGTCCATGTCTACAACGTAAAACAGCTAAAGCTTCACTGCACGGTGCCTGCTTACAATTTCCC AGTGACTGCTATGGCTATTGCCCCCAATACCAACAACCTTGTCATCGCTCATTCGGACCAGCAGGTATTTGAGTACAGCATCCCAGACAA ACAGTATACAGATTGGAGCCGGACTGTCCAGAAGCAGGGCTTTCACCACCTTTGGCTCCAAAGGGATACTCCTATCACACACATCAGTTT TCATCCCAAGAGACCGATGCACATCCTTCTCCATGATGCCTACATGTTCTGCATCATTGACAAGTCATTGCCCCTTCCAAATGACAAAAC CTTACTCTACAATCCATTTCCTCCCACGAATGAATCAGATGTCATCCGGAGGCGCACAGCTCATGCTTTTAAAATTTCTAAGATATATAA GCCTCTACTCTTCATGGATCTTTTGGATGAAAGAACACTCGTGGCAGTAGAACGGCCTCTGGATGACATCATTGCTCAGCTCCCACCACC CATTAAAAAGAAGAAATTTGGAACCTAAAACAGGGCACTGTCTGTGTCCTTCCTTGAACTGTCTACCCTGTTGCTTTTCACAAATCATGG >In-frame_ENST00000422392_ENST00000352319_TCGA-A7-A6VX_CDH1_chr16_68835796_+_CIRH1A_chr16_69170598_length(amino acids)=647AA_start in transcript=64_stop in transcript=2007 MGPWSRSLSALLLLLQVSSWLCQEPEPCHPGFDAESYTFTVPRRHLERGRVLGRVNFEDCTGRQRTAYFSLDTRFKVGTDGVITVKRPLR FHNPQIHFLVYAWDSTYRKFSTKVTLNTVGHHHRPPPHQFFPGHESRATEALCWAEGQRLFSAGLNGEIMEYDLQALNIKYAMDAFGGPI WSMAASPSGSQLLVGCEDGSVKLFQITPDKIQFERNFDRQKSRILSLSWHPSGTHIAAGSIDYISVFDVKSGSAVHKMIVDRQYMGVSKR KCIVWGVAFLSDGTIISVDSAGKVQFWDSATGTLVKSHLIANADVQSIAVADQEDSFVVGTAEGTVFHFQLVPVTSNSSEKQWVRTKPFQ HHTHDVRTVAHSPTALISGGTDTHLVFRPLMEKVEVKNYDAALRKITFPHRCLISCSKKRQLLLFQFAHHLELWRLGSTVATGTVEAMCL LAVSPDGNWLAASGTSAGVHVYNVKQLKLHCTVPAYNFPVTAMAIAPNTNNLVIAHSDQQVFEYSIPDKQYTDWSRTVQKQGFHHLWLQR DTPITHISFHPKRPMHILLHDAYMFCIIDKSLPLPNDKTLLYNPFPPTNESDVIRRRTAHAFKISKIYKPLLFMDLLDERTLVAVERPLD -------------------------------------------------------------- >In-frame_ENST00000422392_ENST00000563094_TCGA-A7-A6VX_CDH1_chr16_68835796_+_CIRH1A_chr16_69170598_length(transcript)=4441nt_BP=451nt GCTCCAGCCCGGCCCGACCCGACCGCACCCGGCGCCTGCCCTCGCTCGGCGTCCCCGGCCAGCCATGGGCCCTTGGAGCCGCAGCCTCTC GGCGCTGCTGCTGCTGCTGCAGGTCTCCTCTTGGCTCTGCCAGGAGCCGGAGCCCTGCCACCCTGGCTTTGACGCCGAGAGCTACACGTT CACGGTGCCCCGGCGCCACCTGGAGAGAGGCCGCGTCCTGGGCAGAGTGAATTTTGAAGATTGCACCGGTCGACAAAGGACAGCCTATTT TTCCCTCGACACCCGATTCAAAGTGGGCACAGATGGTGTGATTACAGTCAAAAGGCCTCTACGGTTTCATAACCCACAGATCCATTTCTT GGTCTACGCCTGGGACTCCACCTACAGAAAGTTTTCCACCAAAGTCACGCTGAATACAGTGGGGCACCACCACCGCCCCCCGCCCCATCA GTTTTTCCCAGGTCATGAGTCTCGGGCTACAGAAGCTTTGTGCTGGGCAGAAGGACAGCGACTCTTTAGTGCTGGGCTCAATGGCGAGAT TATGGAGTATGATTTACAGGCGTTAAACATCAAGTATGCTATGGATGCCTTTGGAGGACCTATTTGGAGCATGGCTGCCAGCCCCAGTGG CTCTCAACTTTTGGTTGGTTGTGAAGATGGATCTGTGAAACTATTTCAAATTACCCCAGACAAAATCCAGTTTGAAAGAAATTTTGATCG GCAGAAAAGTCGCATCCTGAGTCTCAGCTGGCATCCCTCTGGTACCCACATTGCAGCTGGTTCCATAGACTACATTAGTGTGTTTGATGT CAAATCAGGCAGCGCTGTTCATAAGATGATTGTGGACAGGCAGTATATGGGCGTGTCTAAGCGGAAGTGCATCGTGTGGGGTGTCGCCTT CTTGTCCGATGGCACTATCATAAGTGTGGACTCTGCTGGGAAGGTGCAGTTCTGGGACTCAGCCACTGGGACGCTTGTGAAGAGCCATCT CATCGCTAATGCTGACGTGCAGTCCATTGCTGTAGCTGACCAAGAAGACAGTTTCGTGGTGGGCACAGCCGAGGGAACAGTCTTCCATTT TCAGCTGGTCCCTGTGACATCTAACAGCAGTGAGAAGCAGTGGGTGCGGACAAAACCGTTCCAGCATCACACTCATGACGTGCGCACTGT GGCCCACAGCCCAACAGCGCTGATATCTGGAGGCACTGACACCCACTTAGTCTTTCGTCCTCTCATGGAGAAGGTGGAAGTAAAGAATTA CGATGCCGCTCTCCGAAAAATCACCTTTCCCCACCGATGTCTCATCTCCTGTTCTAAAAAGAGGCAGCTTCTCCTCTTCCAGTTTGCTCA TCACTTAGAACTTTGGCGACTGGGATCCACAGTTGCAACAGGCAAGAATGGGGATACTCTTCCACTCTCTAAAAATGCAGATCATTTACT GCACCTAAAGACAAAGGGTCCTGAGAACATTATCTGTAGCTGTATCTCCCCATGTGGAAGTTGGATAGCCTATTCTACAGTTTCTCGGTT TTTTCTCTATCGGCTGAATTATGAACATGACAACATAAGCCTCAAAAGGGTTTCCAAAATGCCAGCATTCCTTCGCTCTGCCCTTCAGAT TTTGTTTTCTGAAGATTCAACAAAGCTCTTTGTAGCATCAAATCAAGGAGCTCTGCATATTGTTCAGCTGTCAGGAGGAAGCTTCAAGCA CCTGCATGCTTTCCAGCCTCAGTCAGGAACAGTGGAGGCCATGTGTCTTTTGGCAGTCAGTCCAGATGGGAATTGGCTAGCTGCATCAGG TACCAGTGCTGGAGTCCATGTCTACAACGTAAAACAGCTAAAGCTTCACTGCACGGTGCCTGCTTACAATTTCCCAGTGACTGCTATGGC TATTGCCCCCAATACCAACAACCTTGTCATCGCTCATTCGGACCAGCAGGTATTTGAGTACAGCATCCCAGACAAACAGTATACAGATTG GAGCCGGACTGTCCAGAAGCAGGGCTTTCACCACCTTTGGCTCCAAAGGGATACTCCTATCACACACATCAGTTTTCATCCCAAGAGACC GATGCACATCCTTCTCCATGATGCCTACATGTTCTGCATCATTGACAAGTCATTGGTGAGTTCTTCACTGCTACCTCCCAAATCTTCTTC TGAATCTTAAAGTTCTAAAAGCAACAAGTACAATAAGGTAAGAGGACAGAGACTCAGAATAAAGGTAGCTAGTAAATCAGAATACAGGTA GCTAGTACATTTCTTGGAGGAGAGGGGCTTTTGTTTTACAGATTCCCTGGTTTGTGTTCCCACAGTTCTTCGGGAGGCTCTCGGGGAAGG GGCTGGCCTTTGTATACTGGCTTTTGCTGATTTGACTATTTGTCTACTTTGCGAGTAAGCACATAAATCTTACACAGAAAAGTGATTAGG CCAGTATTCGGAAGGTGACCCTCATCCGGAAGTATCATTGATTTGGCTAACTTGCTTTCAACTTTGAACTCTGGGGTATCTGAATAACCT GGTTTCATTAAAGGAGGTACAGGCTGAGGTTTTGACCTCTGTGCCCCTTCGCTAAAGCTACTAAAACGCTGTCTGCAGGCTTGAGGAACT GGTCTTAACATCTTCGAAAAACCCAGCTAGGAAAATTCTTCATGGCTGTGATTTACATGGGATACGAGCATTTTCTTCAGTTTTAGATTC TGTCCTCTTTGCCAGCTGCTGTTTTGATTCACCCTGAATTTGTATGGCTTTTCTGGGCAGGTGCTTTGTTTCCTAGGAGCATTGTGGCCA TGCCTGTCCTGCACTTTGGGCTTAGATTACAACCATCACACGGTGTTTTGGTGTGTTTGTGAAGGTGGGGGTGGAAGGAACATGGGGGAA AGCAGCAGATGGCTCTAAAGGAGGTGTGCACGGGGATGTGTCACTGGAATCATCTCGTGGGCCCTGCGACCTCTGGGTGTGGGAAGCAGA GCTGGCTGACAAGTGCCTTCTGCAAGATGAGTGATACAGGAAGGGCCCCTCCCACTCTCTTGCCTCTTTGTAATTGAGCCCAGATCATTT TTTCCAAAGCATTGGCTTTAAGTTCATCGCTTCCTTACAGTAGGCATAGCTATTTCCCAGGAAGTCAGAGACAAAATATCATTTCTTTGG CCAGAGGCCACCTCGAGGTGTCAGTGACATCAGCACAGGTGGTTTGTGTTGAGGTTTCGCCTGGGGAGAACTCCAGTCACTTGTCCAGTC TGTGATCTGGTTGGGGGAGAGTCTAGAAAGCACAGACCCTGTGTGGGCTGAGCTCCTGCACTTGCCAGTTTGTTCCATTCTGACAAAGTG ATACTGATGAGACAGGCCAGAAGCCGCAGAAGGGCCCTTTGATCTTGCTGCATGGAGTTAACAAGCTCTCTTTGCCTCATACACCCACCC TCTACAGTGTGGCTGCAAGAGTAGCTTCAGCTCTTTCTCCCTCTCTCTCCTTTTCTTCTTTTTTTCCCCCCTAGTTTTTCTGAATAGAGG TATTATGGCTACAGCTGTTTTCCCGAATTAACGAATGTCAGGGAGGTACTGAATATATATGATGGTTAGAAGATGATGTTGGGCTCAAAA TGCACTACAGATCTTTGGTCTGCAGAAGCCCAATAAAAGTAACCATTTAAACAATGTGTCTTTGTTTTTTTAGCCCCTTCCAAATGACAA AACCTTACTCTACAATCCATTTCCTCCCACGAATGAATCAGATGTCATCCGGAGGCGCACAGCTCATGCTTTTAAAATTTCTAAGATATA TAAGGTAAAACATCTTGTGTTGTTATTCTGGATAGTTGGTTCCTTTGTGATACCAAAATGTAATAAACTCCACAATCGGAAGATAAGAGC ACCTTCAGTTTCCATGCAGAGAACCTGGCTTGTGGGAGACAAGTCACCTTTTTGAGGCTGGCTGTCCCTTGTATATGTTTTATTGTTCTT GCCTTAGTAGGTTAGAGGCAGGCACATCATACTTAACCAAAATGAAATGCGTAAGTAGTGAGAAATGTTGGCGCTGAGGGTAGAGTCTTT GTTGTCATGAGAGCTGGCTTTAAATTTTACTTGTTGGAGTGTTCCATAGGATAAATGTCAAGCAGGCTGGGCTTGGTAGCTCATACCTGT AATCCCAGCACTTTGGGAGGCCAAGGCAGGTGGATCTCCTCAGCCCAGGAATTCAAAACCAGCCTGGGCACCATGGTGAAACCCCATCAC TATTAACAAAAAAAAAAAAAGGAGAGTTCTGTAAATTACTGATTACTCAAATGACTCAAATGTGATTAGCTTCTTGATGCATTTGTAGCT TGCCAGTTGTCAGTTGCCTTAGGCTGGGTATGGTGATTCACGCCTGTAATCTCAGTACTTTAGGAGGTTGAGGCTGGAGTTCAAGACCAG >In-frame_ENST00000422392_ENST00000563094_TCGA-A7-A6VX_CDH1_chr16_68835796_+_CIRH1A_chr16_69170598_length(amino acids)=701AA_start in transcript=64_stop in transcript=2169 MGPWSRSLSALLLLLQVSSWLCQEPEPCHPGFDAESYTFTVPRRHLERGRVLGRVNFEDCTGRQRTAYFSLDTRFKVGTDGVITVKRPLR FHNPQIHFLVYAWDSTYRKFSTKVTLNTVGHHHRPPPHQFFPGHESRATEALCWAEGQRLFSAGLNGEIMEYDLQALNIKYAMDAFGGPI WSMAASPSGSQLLVGCEDGSVKLFQITPDKIQFERNFDRQKSRILSLSWHPSGTHIAAGSIDYISVFDVKSGSAVHKMIVDRQYMGVSKR KCIVWGVAFLSDGTIISVDSAGKVQFWDSATGTLVKSHLIANADVQSIAVADQEDSFVVGTAEGTVFHFQLVPVTSNSSEKQWVRTKPFQ HHTHDVRTVAHSPTALISGGTDTHLVFRPLMEKVEVKNYDAALRKITFPHRCLISCSKKRQLLLFQFAHHLELWRLGSTVATGKNGDTLP LSKNADHLLHLKTKGPENIICSCISPCGSWIAYSTVSRFFLYRLNYEHDNISLKRVSKMPAFLRSALQILFSEDSTKLFVASNQGALHIV QLSGGSFKHLHAFQPQSGTVEAMCLLAVSPDGNWLAASGTSAGVHVYNVKQLKLHCTVPAYNFPVTAMAIAPNTNNLVIAHSDQQVFEYS -------------------------------------------------------------- >In-frame_ENST00000261769_ENST00000314423_TCGA-D7-6518_CDH1_chr16_68772314_+_CIRH1A_chr16_69177080_length(transcript)=1973nt_BP=354nt AGCCAATCAGCGGTACGGGGGGCGGTGCCTCCGGGGCTCACCTGGCTGCAGCCACGCACCCCCTCTCAGTGGCGTCGGAACTGCAAAGCA CCTGTGAGCTTGCGGAAGTCAGTTCAGACTCCAGCCCGCTCCAGCCCGGCCCGACCCGACCGCACCCGGCGCCTGCCCTCGCTCGGCGTC CCCGGCCAGCCATGGGCCCTTGGAGCCGCAGCCTCTCGGCGCTGCTGCTGCTGCTGCAGGTCTCCTCTTGGCTCTGCCAGGAGCCGGAGC CCTGCCACCCTGGCTTTGACGCCGAGAGCTACACGTTCACGGTGCCCCGGCGCCACCTGGAGAGAGGCCGCGTCCTGGGCAGAGGCAGCG CTGTTCATAAGATGATTGTGGACAGGCAGTATATGGGCGTGTCTAAGCGGAAGTGCATCGTGTGGGGTGTCGCCTTCTTGTCCGATGGCA CTATCATAAGTGTGGACTCTGCTGGGAAGGTGCAGTTCTGGGACTCAGCCACTGGGACGCTTGTGAAGAGCCATCTCATCGCTAATGCTG ACGTGCAGTCCATTGCTGTAGCTGACCAAGAAGACAGTTTCGTGGTGGGCACAGCCGAGGGAACAGTCTTCCATTTTCAGCTGGTCCCTG TGACATCTAACAGCAGTGAGAAGCAGTGGGTGCGGACAAAACCGTTCCAGCATCACACTCATGACGTGCGCACTGTGGCCCACAGCCCAA CAGCGCTGATATCTGGAGGCACTGACACCCACTTAGTCTTTCGTCCTCTCATGGAGAAGGTGGAAGTAAAGAATTACGATGCCGCTCTCC GAAAAATCACCTTTCCCCACCGATGTCTCATCTCCTGTTCTAAAAAGAGGCAGCTTCTCCTCTTCCAGTTTGCTCATCACTTAGAACTTT GGCGACTGGGATCCACAGTTGCAACAGGCAAGAATGGGGATACTCTTCCACTCTCTAAAAATGCAGATCATTTACTGCACCTAAAGACAA AGGGTCCTGAGAACATTATCTGTAGCTGTATCTCCCCATGTGGAAGTTGGATAGCCTATTCTACAGTTTCTCGGTTTTTTCTCTATCGGC TGAATTATGAACATGACAACATAAGCCTCAAAAGGGTTTCCAAAATGCCAGCATTCCTTCGCTCTGCCCTTCAGATTTTGTTTTCTGAAG ATTCAACAAAGCTCTTTGTAGCATCAAATCAAGGAGCTCTGCATATTGTTCAGCTGTCAGGAGGAAGCTTCAAGCACCTGCATGCTTTCC AGCCTCAGTCAGGAACAGTGGAGGCCATGTGTCTTTTGGCAGTCAGTCCAGATGGGAATTGGCTAGCTGCATCAGGTACCAGTGCTGGAG TCCATGTCTACAACGTAAAACAGCTAAAGCTTCACTGCACGGTGCCTGCTTACAATTTCCCAGTGACTGCTATGGCTATTGCCCCCAATA CCAACAACCTTGTCATCGCTCATTCGGACCAGCAGGTATTTGAGTACAGCATCCCAGACAAACAGTATACAGATTGGAGCCGGACTGTCC AGAAGCAGGGCTTTCACCACCTTTGGCTCCAAAGGGATACTCCTATCACACACATCAGTTTTCATCCCAAGAGACCGATGCACATCCTTC TCCATGATGCCTACATGTTCTGCATCATTGACAAGTCATTGCCCCTTCCAAATGACAAAACCTTACTCTACAATCCATTTCCTCCCACGA ATGAATCAGATGTCATCCGGAGGCGCACAGCTCATGCTTTTAAAATTTCTAAGATATATAAGCCTCTACTCTTCATGGATCTTTTGGATG AAAGAACACTCGTGGCAGTAGAACGGCCTCTGGATGACATCATTGCTCAGCTCCCACCACCCATTAAAAAGAAGAAATTTGGAACCTAAA >In-frame_ENST00000261769_ENST00000314423_TCGA-D7-6518_CDH1_chr16_68772314_+_CIRH1A_chr16_69177080_length(amino acids)=615AA_start in transcript=41_stop in transcript=1888 MAAATHPLSVASELQSTCELAEVSSDSSPLQPGPTRPHPAPALARRPRPAMGPWSRSLSALLLLLQVSSWLCQEPEPCHPGFDAESYTFT VPRRHLERGRVLGRGSAVHKMIVDRQYMGVSKRKCIVWGVAFLSDGTIISVDSAGKVQFWDSATGTLVKSHLIANADVQSIAVADQEDSF VVGTAEGTVFHFQLVPVTSNSSEKQWVRTKPFQHHTHDVRTVAHSPTALISGGTDTHLVFRPLMEKVEVKNYDAALRKITFPHRCLISCS KKRQLLLFQFAHHLELWRLGSTVATGKNGDTLPLSKNADHLLHLKTKGPENIICSCISPCGSWIAYSTVSRFFLYRLNYEHDNISLKRVS KMPAFLRSALQILFSEDSTKLFVASNQGALHIVQLSGGSFKHLHAFQPQSGTVEAMCLLAVSPDGNWLAASGTSAGVHVYNVKQLKLHCT VPAYNFPVTAMAIAPNTNNLVIAHSDQQVFEYSIPDKQYTDWSRTVQKQGFHHLWLQRDTPITHISFHPKRPMHILLHDAYMFCIIDKSL -------------------------------------------------------------- >In-frame_ENST00000261769_ENST00000352319_TCGA-D7-6518_CDH1_chr16_68772314_+_CIRH1A_chr16_69177080_length(transcript)=1627nt_BP=354nt AGCCAATCAGCGGTACGGGGGGCGGTGCCTCCGGGGCTCACCTGGCTGCAGCCACGCACCCCCTCTCAGTGGCGTCGGAACTGCAAAGCA CCTGTGAGCTTGCGGAAGTCAGTTCAGACTCCAGCCCGCTCCAGCCCGGCCCGACCCGACCGCACCCGGCGCCTGCCCTCGCTCGGCGTC CCCGGCCAGCCATGGGCCCTTGGAGCCGCAGCCTCTCGGCGCTGCTGCTGCTGCTGCAGGTCTCCTCTTGGCTCTGCCAGGAGCCGGAGC CCTGCCACCCTGGCTTTGACGCCGAGAGCTACACGTTCACGGTGCCCCGGCGCCACCTGGAGAGAGGCCGCGTCCTGGGCAGAGGCAGCG CTGTTCATAAGATGATTGTGGACAGGCAGTATATGGGCGTGTCTAAGCGGAAGTGCATCGTGTGGGGTGTCGCCTTCTTGTCCGATGGCA CTATCATAAGTGTGGACTCTGCTGGGAAGGTGCAGTTCTGGGACTCAGCCACTGGGACGCTTGTGAAGAGCCATCTCATCGCTAATGCTG ACGTGCAGTCCATTGCTGTAGCTGACCAAGAAGACAGTTTCGTGGTGGGCACAGCCGAGGGAACAGTCTTCCATTTTCAGCTGGTCCCTG TGACATCTAACAGCAGTGAGAAGCAGTGGGTGCGGACAAAACCGTTCCAGCATCACACTCATGACGTGCGCACTGTGGCCCACAGCCCAA CAGCGCTGATATCTGGAGGCACTGACACCCACTTAGTCTTTCGTCCTCTCATGGAGAAGGTGGAAGTAAAGAATTACGATGCCGCTCTCC GAAAAATCACCTTTCCCCACCGATGTCTCATCTCCTGTTCTAAAAAGAGGCAGCTTCTCCTCTTCCAGTTTGCTCATCACTTAGAACTTT GGCGACTGGGATCCACAGTTGCAACAGGAACAGTGGAGGCCATGTGTCTTTTGGCAGTCAGTCCAGATGGGAATTGGCTAGCTGCATCAG GTACCAGTGCTGGAGTCCATGTCTACAACGTAAAACAGCTAAAGCTTCACTGCACGGTGCCTGCTTACAATTTCCCAGTGACTGCTATGG CTATTGCCCCCAATACCAACAACCTTGTCATCGCTCATTCGGACCAGCAGGTATTTGAGTACAGCATCCCAGACAAACAGTATACAGATT GGAGCCGGACTGTCCAGAAGCAGGGCTTTCACCACCTTTGGCTCCAAAGGGATACTCCTATCACACACATCAGTTTTCATCCCAAGAGAC CGATGCACATCCTTCTCCATGATGCCTACATGTTCTGCATCATTGACAAGTCATTGCCCCTTCCAAATGACAAAACCTTACTCTACAATC CATTTCCTCCCACGAATGAATCAGATGTCATCCGGAGGCGCACAGCTCATGCTTTTAAAATTTCTAAGATATATAAGCCTCTACTCTTCA TGGATCTTTTGGATGAAAGAACACTCGTGGCAGTAGAACGGCCTCTGGATGACATCATTGCTCAGCTCCCACCACCCATTAAAAAGAAGA AATTTGGAACCTAAAACAGGGCACTGTCTGTGTCCTTCCTTGAACTGTCTACCCTGTTGCTTTTCACAAATCATGGTAATAAAACAAGTT >In-frame_ENST00000261769_ENST00000352319_TCGA-D7-6518_CDH1_chr16_68772314_+_CIRH1A_chr16_69177080_length(amino acids)=500AA_start in transcript=41_stop in transcript=1543 MAAATHPLSVASELQSTCELAEVSSDSSPLQPGPTRPHPAPALARRPRPAMGPWSRSLSALLLLLQVSSWLCQEPEPCHPGFDAESYTFT VPRRHLERGRVLGRGSAVHKMIVDRQYMGVSKRKCIVWGVAFLSDGTIISVDSAGKVQFWDSATGTLVKSHLIANADVQSIAVADQEDSF VVGTAEGTVFHFQLVPVTSNSSEKQWVRTKPFQHHTHDVRTVAHSPTALISGGTDTHLVFRPLMEKVEVKNYDAALRKITFPHRCLISCS KKRQLLLFQFAHHLELWRLGSTVATGTVEAMCLLAVSPDGNWLAASGTSAGVHVYNVKQLKLHCTVPAYNFPVTAMAIAPNTNNLVIAHS DQQVFEYSIPDKQYTDWSRTVQKQGFHHLWLQRDTPITHISFHPKRPMHILLHDAYMFCIIDKSLPLPNDKTLLYNPFPPTNESDVIRRR -------------------------------------------------------------- >In-frame_ENST00000261769_ENST00000563094_TCGA-D7-6518_CDH1_chr16_68772314_+_CIRH1A_chr16_69177080_length(transcript)=3977nt_BP=354nt AGCCAATCAGCGGTACGGGGGGCGGTGCCTCCGGGGCTCACCTGGCTGCAGCCACGCACCCCCTCTCAGTGGCGTCGGAACTGCAAAGCA CCTGTGAGCTTGCGGAAGTCAGTTCAGACTCCAGCCCGCTCCAGCCCGGCCCGACCCGACCGCACCCGGCGCCTGCCCTCGCTCGGCGTC CCCGGCCAGCCATGGGCCCTTGGAGCCGCAGCCTCTCGGCGCTGCTGCTGCTGCTGCAGGTCTCCTCTTGGCTCTGCCAGGAGCCGGAGC CCTGCCACCCTGGCTTTGACGCCGAGAGCTACACGTTCACGGTGCCCCGGCGCCACCTGGAGAGAGGCCGCGTCCTGGGCAGAGGCAGCG CTGTTCATAAGATGATTGTGGACAGGCAGTATATGGGCGTGTCTAAGCGGAAGTGCATCGTGTGGGGTGTCGCCTTCTTGTCCGATGGCA CTATCATAAGTGTGGACTCTGCTGGGAAGGTGCAGTTCTGGGACTCAGCCACTGGGACGCTTGTGAAGAGCCATCTCATCGCTAATGCTG ACGTGCAGTCCATTGCTGTAGCTGACCAAGAAGACAGTTTCGTGGTGGGCACAGCCGAGGGAACAGTCTTCCATTTTCAGCTGGTCCCTG TGACATCTAACAGCAGTGAGAAGCAGTGGGTGCGGACAAAACCGTTCCAGCATCACACTCATGACGTGCGCACTGTGGCCCACAGCCCAA CAGCGCTGATATCTGGAGGCACTGACACCCACTTAGTCTTTCGTCCTCTCATGGAGAAGGTGGAAGTAAAGAATTACGATGCCGCTCTCC GAAAAATCACCTTTCCCCACCGATGTCTCATCTCCTGTTCTAAAAAGAGGCAGCTTCTCCTCTTCCAGTTTGCTCATCACTTAGAACTTT GGCGACTGGGATCCACAGTTGCAACAGGCAAGAATGGGGATACTCTTCCACTCTCTAAAAATGCAGATCATTTACTGCACCTAAAGACAA AGGGTCCTGAGAACATTATCTGTAGCTGTATCTCCCCATGTGGAAGTTGGATAGCCTATTCTACAGTTTCTCGGTTTTTTCTCTATCGGC TGAATTATGAACATGACAACATAAGCCTCAAAAGGGTTTCCAAAATGCCAGCATTCCTTCGCTCTGCCCTTCAGATTTTGTTTTCTGAAG ATTCAACAAAGCTCTTTGTAGCATCAAATCAAGGAGCTCTGCATATTGTTCAGCTGTCAGGAGGAAGCTTCAAGCACCTGCATGCTTTCC AGCCTCAGTCAGGAACAGTGGAGGCCATGTGTCTTTTGGCAGTCAGTCCAGATGGGAATTGGCTAGCTGCATCAGGTACCAGTGCTGGAG TCCATGTCTACAACGTAAAACAGCTAAAGCTTCACTGCACGGTGCCTGCTTACAATTTCCCAGTGACTGCTATGGCTATTGCCCCCAATA CCAACAACCTTGTCATCGCTCATTCGGACCAGCAGGTATTTGAGTACAGCATCCCAGACAAACAGTATACAGATTGGAGCCGGACTGTCC AGAAGCAGGGCTTTCACCACCTTTGGCTCCAAAGGGATACTCCTATCACACACATCAGTTTTCATCCCAAGAGACCGATGCACATCCTTC TCCATGATGCCTACATGTTCTGCATCATTGACAAGTCATTGGTGAGTTCTTCACTGCTACCTCCCAAATCTTCTTCTGAATCTTAAAGTT CTAAAAGCAACAAGTACAATAAGGTAAGAGGACAGAGACTCAGAATAAAGGTAGCTAGTAAATCAGAATACAGGTAGCTAGTACATTTCT TGGAGGAGAGGGGCTTTTGTTTTACAGATTCCCTGGTTTGTGTTCCCACAGTTCTTCGGGAGGCTCTCGGGGAAGGGGCTGGCCTTTGTA TACTGGCTTTTGCTGATTTGACTATTTGTCTACTTTGCGAGTAAGCACATAAATCTTACACAGAAAAGTGATTAGGCCAGTATTCGGAAG GTGACCCTCATCCGGAAGTATCATTGATTTGGCTAACTTGCTTTCAACTTTGAACTCTGGGGTATCTGAATAACCTGGTTTCATTAAAGG AGGTACAGGCTGAGGTTTTGACCTCTGTGCCCCTTCGCTAAAGCTACTAAAACGCTGTCTGCAGGCTTGAGGAACTGGTCTTAACATCTT CGAAAAACCCAGCTAGGAAAATTCTTCATGGCTGTGATTTACATGGGATACGAGCATTTTCTTCAGTTTTAGATTCTGTCCTCTTTGCCA GCTGCTGTTTTGATTCACCCTGAATTTGTATGGCTTTTCTGGGCAGGTGCTTTGTTTCCTAGGAGCATTGTGGCCATGCCTGTCCTGCAC TTTGGGCTTAGATTACAACCATCACACGGTGTTTTGGTGTGTTTGTGAAGGTGGGGGTGGAAGGAACATGGGGGAAAGCAGCAGATGGCT CTAAAGGAGGTGTGCACGGGGATGTGTCACTGGAATCATCTCGTGGGCCCTGCGACCTCTGGGTGTGGGAAGCAGAGCTGGCTGACAAGT GCCTTCTGCAAGATGAGTGATACAGGAAGGGCCCCTCCCACTCTCTTGCCTCTTTGTAATTGAGCCCAGATCATTTTTTCCAAAGCATTG GCTTTAAGTTCATCGCTTCCTTACAGTAGGCATAGCTATTTCCCAGGAAGTCAGAGACAAAATATCATTTCTTTGGCCAGAGGCCACCTC GAGGTGTCAGTGACATCAGCACAGGTGGTTTGTGTTGAGGTTTCGCCTGGGGAGAACTCCAGTCACTTGTCCAGTCTGTGATCTGGTTGG GGGAGAGTCTAGAAAGCACAGACCCTGTGTGGGCTGAGCTCCTGCACTTGCCAGTTTGTTCCATTCTGACAAAGTGATACTGATGAGACA GGCCAGAAGCCGCAGAAGGGCCCTTTGATCTTGCTGCATGGAGTTAACAAGCTCTCTTTGCCTCATACACCCACCCTCTACAGTGTGGCT GCAAGAGTAGCTTCAGCTCTTTCTCCCTCTCTCTCCTTTTCTTCTTTTTTTCCCCCCTAGTTTTTCTGAATAGAGGTATTATGGCTACAG CTGTTTTCCCGAATTAACGAATGTCAGGGAGGTACTGAATATATATGATGGTTAGAAGATGATGTTGGGCTCAAAATGCACTACAGATCT TTGGTCTGCAGAAGCCCAATAAAAGTAACCATTTAAACAATGTGTCTTTGTTTTTTTAGCCCCTTCCAAATGACAAAACCTTACTCTACA ATCCATTTCCTCCCACGAATGAATCAGATGTCATCCGGAGGCGCACAGCTCATGCTTTTAAAATTTCTAAGATATATAAGGTAAAACATC TTGTGTTGTTATTCTGGATAGTTGGTTCCTTTGTGATACCAAAATGTAATAAACTCCACAATCGGAAGATAAGAGCACCTTCAGTTTCCA TGCAGAGAACCTGGCTTGTGGGAGACAAGTCACCTTTTTGAGGCTGGCTGTCCCTTGTATATGTTTTATTGTTCTTGCCTTAGTAGGTTA GAGGCAGGCACATCATACTTAACCAAAATGAAATGCGTAAGTAGTGAGAAATGTTGGCGCTGAGGGTAGAGTCTTTGTTGTCATGAGAGC TGGCTTTAAATTTTACTTGTTGGAGTGTTCCATAGGATAAATGTCAAGCAGGCTGGGCTTGGTAGCTCATACCTGTAATCCCAGCACTTT GGGAGGCCAAGGCAGGTGGATCTCCTCAGCCCAGGAATTCAAAACCAGCCTGGGCACCATGGTGAAACCCCATCACTATTAACAAAAAAA AAAAAAGGAGAGTTCTGTAAATTACTGATTACTCAAATGACTCAAATGTGATTAGCTTCTTGATGCATTTGTAGCTTGCCAGTTGTCAGT TGCCTTAGGCTGGGTATGGTGATTCACGCCTGTAATCTCAGTACTTTAGGAGGTTGAGGCTGGAGTTCAAGACCAGTCTGGGCAACATAG >In-frame_ENST00000261769_ENST00000563094_TCGA-D7-6518_CDH1_chr16_68772314_+_CIRH1A_chr16_69177080_length(amino acids)=554AA_start in transcript=41_stop in transcript=1705 MAAATHPLSVASELQSTCELAEVSSDSSPLQPGPTRPHPAPALARRPRPAMGPWSRSLSALLLLLQVSSWLCQEPEPCHPGFDAESYTFT VPRRHLERGRVLGRGSAVHKMIVDRQYMGVSKRKCIVWGVAFLSDGTIISVDSAGKVQFWDSATGTLVKSHLIANADVQSIAVADQEDSF VVGTAEGTVFHFQLVPVTSNSSEKQWVRTKPFQHHTHDVRTVAHSPTALISGGTDTHLVFRPLMEKVEVKNYDAALRKITFPHRCLISCS KKRQLLLFQFAHHLELWRLGSTVATGKNGDTLPLSKNADHLLHLKTKGPENIICSCISPCGSWIAYSTVSRFFLYRLNYEHDNISLKRVS KMPAFLRSALQILFSEDSTKLFVASNQGALHIVQLSGGSFKHLHAFQPQSGTVEAMCLLAVSPDGNWLAASGTSAGVHVYNVKQLKLHCT VPAYNFPVTAMAIAPNTNNLVIAHSDQQVFEYSIPDKQYTDWSRTVQKQGFHHLWLQRDTPITHISFHPKRPMHILLHDAYMFCIIDKSL -------------------------------------------------------------- >In-frame_ENST00000422392_ENST00000314423_TCGA-D7-6518_CDH1_chr16_68772314_+_CIRH1A_chr16_69177080_length(transcript)=1846nt_BP=227nt GCTCCAGCCCGGCCCGACCCGACCGCACCCGGCGCCTGCCCTCGCTCGGCGTCCCCGGCCAGCCATGGGCCCTTGGAGCCGCAGCCTCTC GGCGCTGCTGCTGCTGCTGCAGGTCTCCTCTTGGCTCTGCCAGGAGCCGGAGCCCTGCCACCCTGGCTTTGACGCCGAGAGCTACACGTT CACGGTGCCCCGGCGCCACCTGGAGAGAGGCCGCGTCCTGGGCAGAGGCAGCGCTGTTCATAAGATGATTGTGGACAGGCAGTATATGGG CGTGTCTAAGCGGAAGTGCATCGTGTGGGGTGTCGCCTTCTTGTCCGATGGCACTATCATAAGTGTGGACTCTGCTGGGAAGGTGCAGTT CTGGGACTCAGCCACTGGGACGCTTGTGAAGAGCCATCTCATCGCTAATGCTGACGTGCAGTCCATTGCTGTAGCTGACCAAGAAGACAG TTTCGTGGTGGGCACAGCCGAGGGAACAGTCTTCCATTTTCAGCTGGTCCCTGTGACATCTAACAGCAGTGAGAAGCAGTGGGTGCGGAC AAAACCGTTCCAGCATCACACTCATGACGTGCGCACTGTGGCCCACAGCCCAACAGCGCTGATATCTGGAGGCACTGACACCCACTTAGT CTTTCGTCCTCTCATGGAGAAGGTGGAAGTAAAGAATTACGATGCCGCTCTCCGAAAAATCACCTTTCCCCACCGATGTCTCATCTCCTG TTCTAAAAAGAGGCAGCTTCTCCTCTTCCAGTTTGCTCATCACTTAGAACTTTGGCGACTGGGATCCACAGTTGCAACAGGCAAGAATGG GGATACTCTTCCACTCTCTAAAAATGCAGATCATTTACTGCACCTAAAGACAAAGGGTCCTGAGAACATTATCTGTAGCTGTATCTCCCC ATGTGGAAGTTGGATAGCCTATTCTACAGTTTCTCGGTTTTTTCTCTATCGGCTGAATTATGAACATGACAACATAAGCCTCAAAAGGGT TTCCAAAATGCCAGCATTCCTTCGCTCTGCCCTTCAGATTTTGTTTTCTGAAGATTCAACAAAGCTCTTTGTAGCATCAAATCAAGGAGC TCTGCATATTGTTCAGCTGTCAGGAGGAAGCTTCAAGCACCTGCATGCTTTCCAGCCTCAGTCAGGAACAGTGGAGGCCATGTGTCTTTT GGCAGTCAGTCCAGATGGGAATTGGCTAGCTGCATCAGGTACCAGTGCTGGAGTCCATGTCTACAACGTAAAACAGCTAAAGCTTCACTG CACGGTGCCTGCTTACAATTTCCCAGTGACTGCTATGGCTATTGCCCCCAATACCAACAACCTTGTCATCGCTCATTCGGACCAGCAGGT ATTTGAGTACAGCATCCCAGACAAACAGTATACAGATTGGAGCCGGACTGTCCAGAAGCAGGGCTTTCACCACCTTTGGCTCCAAAGGGA TACTCCTATCACACACATCAGTTTTCATCCCAAGAGACCGATGCACATCCTTCTCCATGATGCCTACATGTTCTGCATCATTGACAAGTC ATTGCCCCTTCCAAATGACAAAACCTTACTCTACAATCCATTTCCTCCCACGAATGAATCAGATGTCATCCGGAGGCGCACAGCTCATGC TTTTAAAATTTCTAAGATATATAAGCCTCTACTCTTCATGGATCTTTTGGATGAAAGAACACTCGTGGCAGTAGAACGGCCTCTGGATGA CATCATTGCTCAGCTCCCACCACCCATTAAAAAGAAGAAATTTGGAACCTAAAACAGGGCACTGTCTGTGTCCTTCCTTGAACTGTCTAC >In-frame_ENST00000422392_ENST00000314423_TCGA-D7-6518_CDH1_chr16_68772314_+_CIRH1A_chr16_69177080_length(amino acids)=565AA_start in transcript=64_stop in transcript=1761 MGPWSRSLSALLLLLQVSSWLCQEPEPCHPGFDAESYTFTVPRRHLERGRVLGRGSAVHKMIVDRQYMGVSKRKCIVWGVAFLSDGTIIS VDSAGKVQFWDSATGTLVKSHLIANADVQSIAVADQEDSFVVGTAEGTVFHFQLVPVTSNSSEKQWVRTKPFQHHTHDVRTVAHSPTALI SGGTDTHLVFRPLMEKVEVKNYDAALRKITFPHRCLISCSKKRQLLLFQFAHHLELWRLGSTVATGKNGDTLPLSKNADHLLHLKTKGPE NIICSCISPCGSWIAYSTVSRFFLYRLNYEHDNISLKRVSKMPAFLRSALQILFSEDSTKLFVASNQGALHIVQLSGGSFKHLHAFQPQS GTVEAMCLLAVSPDGNWLAASGTSAGVHVYNVKQLKLHCTVPAYNFPVTAMAIAPNTNNLVIAHSDQQVFEYSIPDKQYTDWSRTVQKQG FHHLWLQRDTPITHISFHPKRPMHILLHDAYMFCIIDKSLPLPNDKTLLYNPFPPTNESDVIRRRTAHAFKISKIYKPLLFMDLLDERTL -------------------------------------------------------------- >In-frame_ENST00000422392_ENST00000352319_TCGA-D7-6518_CDH1_chr16_68772314_+_CIRH1A_chr16_69177080_length(transcript)=1500nt_BP=227nt GCTCCAGCCCGGCCCGACCCGACCGCACCCGGCGCCTGCCCTCGCTCGGCGTCCCCGGCCAGCCATGGGCCCTTGGAGCCGCAGCCTCTC GGCGCTGCTGCTGCTGCTGCAGGTCTCCTCTTGGCTCTGCCAGGAGCCGGAGCCCTGCCACCCTGGCTTTGACGCCGAGAGCTACACGTT CACGGTGCCCCGGCGCCACCTGGAGAGAGGCCGCGTCCTGGGCAGAGGCAGCGCTGTTCATAAGATGATTGTGGACAGGCAGTATATGGG CGTGTCTAAGCGGAAGTGCATCGTGTGGGGTGTCGCCTTCTTGTCCGATGGCACTATCATAAGTGTGGACTCTGCTGGGAAGGTGCAGTT CTGGGACTCAGCCACTGGGACGCTTGTGAAGAGCCATCTCATCGCTAATGCTGACGTGCAGTCCATTGCTGTAGCTGACCAAGAAGACAG TTTCGTGGTGGGCACAGCCGAGGGAACAGTCTTCCATTTTCAGCTGGTCCCTGTGACATCTAACAGCAGTGAGAAGCAGTGGGTGCGGAC AAAACCGTTCCAGCATCACACTCATGACGTGCGCACTGTGGCCCACAGCCCAACAGCGCTGATATCTGGAGGCACTGACACCCACTTAGT CTTTCGTCCTCTCATGGAGAAGGTGGAAGTAAAGAATTACGATGCCGCTCTCCGAAAAATCACCTTTCCCCACCGATGTCTCATCTCCTG TTCTAAAAAGAGGCAGCTTCTCCTCTTCCAGTTTGCTCATCACTTAGAACTTTGGCGACTGGGATCCACAGTTGCAACAGGAACAGTGGA GGCCATGTGTCTTTTGGCAGTCAGTCCAGATGGGAATTGGCTAGCTGCATCAGGTACCAGTGCTGGAGTCCATGTCTACAACGTAAAACA GCTAAAGCTTCACTGCACGGTGCCTGCTTACAATTTCCCAGTGACTGCTATGGCTATTGCCCCCAATACCAACAACCTTGTCATCGCTCA TTCGGACCAGCAGGTATTTGAGTACAGCATCCCAGACAAACAGTATACAGATTGGAGCCGGACTGTCCAGAAGCAGGGCTTTCACCACCT TTGGCTCCAAAGGGATACTCCTATCACACACATCAGTTTTCATCCCAAGAGACCGATGCACATCCTTCTCCATGATGCCTACATGTTCTG CATCATTGACAAGTCATTGCCCCTTCCAAATGACAAAACCTTACTCTACAATCCATTTCCTCCCACGAATGAATCAGATGTCATCCGGAG GCGCACAGCTCATGCTTTTAAAATTTCTAAGATATATAAGCCTCTACTCTTCATGGATCTTTTGGATGAAAGAACACTCGTGGCAGTAGA ACGGCCTCTGGATGACATCATTGCTCAGCTCCCACCACCCATTAAAAAGAAGAAATTTGGAACCTAAAACAGGGCACTGTCTGTGTCCTT >In-frame_ENST00000422392_ENST00000352319_TCGA-D7-6518_CDH1_chr16_68772314_+_CIRH1A_chr16_69177080_length(amino acids)=450AA_start in transcript=64_stop in transcript=1416 MGPWSRSLSALLLLLQVSSWLCQEPEPCHPGFDAESYTFTVPRRHLERGRVLGRGSAVHKMIVDRQYMGVSKRKCIVWGVAFLSDGTIIS VDSAGKVQFWDSATGTLVKSHLIANADVQSIAVADQEDSFVVGTAEGTVFHFQLVPVTSNSSEKQWVRTKPFQHHTHDVRTVAHSPTALI SGGTDTHLVFRPLMEKVEVKNYDAALRKITFPHRCLISCSKKRQLLLFQFAHHLELWRLGSTVATGTVEAMCLLAVSPDGNWLAASGTSA GVHVYNVKQLKLHCTVPAYNFPVTAMAIAPNTNNLVIAHSDQQVFEYSIPDKQYTDWSRTVQKQGFHHLWLQRDTPITHISFHPKRPMHI LLHDAYMFCIIDKSLPLPNDKTLLYNPFPPTNESDVIRRRTAHAFKISKIYKPLLFMDLLDERTLVAVERPLDDIIAQLPPPIKKKKFGT -------------------------------------------------------------- >In-frame_ENST00000422392_ENST00000563094_TCGA-D7-6518_CDH1_chr16_68772314_+_CIRH1A_chr16_69177080_length(transcript)=3850nt_BP=227nt GCTCCAGCCCGGCCCGACCCGACCGCACCCGGCGCCTGCCCTCGCTCGGCGTCCCCGGCCAGCCATGGGCCCTTGGAGCCGCAGCCTCTC GGCGCTGCTGCTGCTGCTGCAGGTCTCCTCTTGGCTCTGCCAGGAGCCGGAGCCCTGCCACCCTGGCTTTGACGCCGAGAGCTACACGTT CACGGTGCCCCGGCGCCACCTGGAGAGAGGCCGCGTCCTGGGCAGAGGCAGCGCTGTTCATAAGATGATTGTGGACAGGCAGTATATGGG CGTGTCTAAGCGGAAGTGCATCGTGTGGGGTGTCGCCTTCTTGTCCGATGGCACTATCATAAGTGTGGACTCTGCTGGGAAGGTGCAGTT CTGGGACTCAGCCACTGGGACGCTTGTGAAGAGCCATCTCATCGCTAATGCTGACGTGCAGTCCATTGCTGTAGCTGACCAAGAAGACAG TTTCGTGGTGGGCACAGCCGAGGGAACAGTCTTCCATTTTCAGCTGGTCCCTGTGACATCTAACAGCAGTGAGAAGCAGTGGGTGCGGAC AAAACCGTTCCAGCATCACACTCATGACGTGCGCACTGTGGCCCACAGCCCAACAGCGCTGATATCTGGAGGCACTGACACCCACTTAGT CTTTCGTCCTCTCATGGAGAAGGTGGAAGTAAAGAATTACGATGCCGCTCTCCGAAAAATCACCTTTCCCCACCGATGTCTCATCTCCTG TTCTAAAAAGAGGCAGCTTCTCCTCTTCCAGTTTGCTCATCACTTAGAACTTTGGCGACTGGGATCCACAGTTGCAACAGGCAAGAATGG GGATACTCTTCCACTCTCTAAAAATGCAGATCATTTACTGCACCTAAAGACAAAGGGTCCTGAGAACATTATCTGTAGCTGTATCTCCCC ATGTGGAAGTTGGATAGCCTATTCTACAGTTTCTCGGTTTTTTCTCTATCGGCTGAATTATGAACATGACAACATAAGCCTCAAAAGGGT TTCCAAAATGCCAGCATTCCTTCGCTCTGCCCTTCAGATTTTGTTTTCTGAAGATTCAACAAAGCTCTTTGTAGCATCAAATCAAGGAGC TCTGCATATTGTTCAGCTGTCAGGAGGAAGCTTCAAGCACCTGCATGCTTTCCAGCCTCAGTCAGGAACAGTGGAGGCCATGTGTCTTTT GGCAGTCAGTCCAGATGGGAATTGGCTAGCTGCATCAGGTACCAGTGCTGGAGTCCATGTCTACAACGTAAAACAGCTAAAGCTTCACTG CACGGTGCCTGCTTACAATTTCCCAGTGACTGCTATGGCTATTGCCCCCAATACCAACAACCTTGTCATCGCTCATTCGGACCAGCAGGT ATTTGAGTACAGCATCCCAGACAAACAGTATACAGATTGGAGCCGGACTGTCCAGAAGCAGGGCTTTCACCACCTTTGGCTCCAAAGGGA TACTCCTATCACACACATCAGTTTTCATCCCAAGAGACCGATGCACATCCTTCTCCATGATGCCTACATGTTCTGCATCATTGACAAGTC ATTGGTGAGTTCTTCACTGCTACCTCCCAAATCTTCTTCTGAATCTTAAAGTTCTAAAAGCAACAAGTACAATAAGGTAAGAGGACAGAG ACTCAGAATAAAGGTAGCTAGTAAATCAGAATACAGGTAGCTAGTACATTTCTTGGAGGAGAGGGGCTTTTGTTTTACAGATTCCCTGGT TTGTGTTCCCACAGTTCTTCGGGAGGCTCTCGGGGAAGGGGCTGGCCTTTGTATACTGGCTTTTGCTGATTTGACTATTTGTCTACTTTG CGAGTAAGCACATAAATCTTACACAGAAAAGTGATTAGGCCAGTATTCGGAAGGTGACCCTCATCCGGAAGTATCATTGATTTGGCTAAC TTGCTTTCAACTTTGAACTCTGGGGTATCTGAATAACCTGGTTTCATTAAAGGAGGTACAGGCTGAGGTTTTGACCTCTGTGCCCCTTCG CTAAAGCTACTAAAACGCTGTCTGCAGGCTTGAGGAACTGGTCTTAACATCTTCGAAAAACCCAGCTAGGAAAATTCTTCATGGCTGTGA TTTACATGGGATACGAGCATTTTCTTCAGTTTTAGATTCTGTCCTCTTTGCCAGCTGCTGTTTTGATTCACCCTGAATTTGTATGGCTTT TCTGGGCAGGTGCTTTGTTTCCTAGGAGCATTGTGGCCATGCCTGTCCTGCACTTTGGGCTTAGATTACAACCATCACACGGTGTTTTGG TGTGTTTGTGAAGGTGGGGGTGGAAGGAACATGGGGGAAAGCAGCAGATGGCTCTAAAGGAGGTGTGCACGGGGATGTGTCACTGGAATC ATCTCGTGGGCCCTGCGACCTCTGGGTGTGGGAAGCAGAGCTGGCTGACAAGTGCCTTCTGCAAGATGAGTGATACAGGAAGGGCCCCTC CCACTCTCTTGCCTCTTTGTAATTGAGCCCAGATCATTTTTTCCAAAGCATTGGCTTTAAGTTCATCGCTTCCTTACAGTAGGCATAGCT ATTTCCCAGGAAGTCAGAGACAAAATATCATTTCTTTGGCCAGAGGCCACCTCGAGGTGTCAGTGACATCAGCACAGGTGGTTTGTGTTG AGGTTTCGCCTGGGGAGAACTCCAGTCACTTGTCCAGTCTGTGATCTGGTTGGGGGAGAGTCTAGAAAGCACAGACCCTGTGTGGGCTGA GCTCCTGCACTTGCCAGTTTGTTCCATTCTGACAAAGTGATACTGATGAGACAGGCCAGAAGCCGCAGAAGGGCCCTTTGATCTTGCTGC ATGGAGTTAACAAGCTCTCTTTGCCTCATACACCCACCCTCTACAGTGTGGCTGCAAGAGTAGCTTCAGCTCTTTCTCCCTCTCTCTCCT TTTCTTCTTTTTTTCCCCCCTAGTTTTTCTGAATAGAGGTATTATGGCTACAGCTGTTTTCCCGAATTAACGAATGTCAGGGAGGTACTG AATATATATGATGGTTAGAAGATGATGTTGGGCTCAAAATGCACTACAGATCTTTGGTCTGCAGAAGCCCAATAAAAGTAACCATTTAAA CAATGTGTCTTTGTTTTTTTAGCCCCTTCCAAATGACAAAACCTTACTCTACAATCCATTTCCTCCCACGAATGAATCAGATGTCATCCG GAGGCGCACAGCTCATGCTTTTAAAATTTCTAAGATATATAAGGTAAAACATCTTGTGTTGTTATTCTGGATAGTTGGTTCCTTTGTGAT ACCAAAATGTAATAAACTCCACAATCGGAAGATAAGAGCACCTTCAGTTTCCATGCAGAGAACCTGGCTTGTGGGAGACAAGTCACCTTT TTGAGGCTGGCTGTCCCTTGTATATGTTTTATTGTTCTTGCCTTAGTAGGTTAGAGGCAGGCACATCATACTTAACCAAAATGAAATGCG TAAGTAGTGAGAAATGTTGGCGCTGAGGGTAGAGTCTTTGTTGTCATGAGAGCTGGCTTTAAATTTTACTTGTTGGAGTGTTCCATAGGA TAAATGTCAAGCAGGCTGGGCTTGGTAGCTCATACCTGTAATCCCAGCACTTTGGGAGGCCAAGGCAGGTGGATCTCCTCAGCCCAGGAA TTCAAAACCAGCCTGGGCACCATGGTGAAACCCCATCACTATTAACAAAAAAAAAAAAAGGAGAGTTCTGTAAATTACTGATTACTCAAA TGACTCAAATGTGATTAGCTTCTTGATGCATTTGTAGCTTGCCAGTTGTCAGTTGCCTTAGGCTGGGTATGGTGATTCACGCCTGTAATC >In-frame_ENST00000422392_ENST00000563094_TCGA-D7-6518_CDH1_chr16_68772314_+_CIRH1A_chr16_69177080_length(amino acids)=504AA_start in transcript=64_stop in transcript=1578 MGPWSRSLSALLLLLQVSSWLCQEPEPCHPGFDAESYTFTVPRRHLERGRVLGRGSAVHKMIVDRQYMGVSKRKCIVWGVAFLSDGTIIS VDSAGKVQFWDSATGTLVKSHLIANADVQSIAVADQEDSFVVGTAEGTVFHFQLVPVTSNSSEKQWVRTKPFQHHTHDVRTVAHSPTALI SGGTDTHLVFRPLMEKVEVKNYDAALRKITFPHRCLISCSKKRQLLLFQFAHHLELWRLGSTVATGKNGDTLPLSKNADHLLHLKTKGPE NIICSCISPCGSWIAYSTVSRFFLYRLNYEHDNISLKRVSKMPAFLRSALQILFSEDSTKLFVASNQGALHIVQLSGGSFKHLHAFQPQS GTVEAMCLLAVSPDGNWLAASGTSAGVHVYNVKQLKLHCTVPAYNFPVTAMAIAPNTNNLVIAHSDQQVFEYSIPDKQYTDWSRTVQKQG -------------------------------------------------------------- |
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Fusion Gene PPI Analysis for CDH1-CIRH1A |
Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in |
Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
Hgene | Hgene's interactors | Tgene | Tgene's interactors |
- Retained PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
- Lost PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
- Retained PPIs, but lost function due to frame-shift fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Related Drugs for CDH1-CIRH1A |
Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.8 2021-05-08) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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Related Diseases for CDH1-CIRH1A |
Diseases associated with fusion partners. (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Hgene | CDH1 | C1708349 | Hereditary Diffuse Gastric Cancer | 15 | CLINGEN;CTD_human;GENOMICS_ENGLAND;ORPHANET;UNIPROT |
Hgene | CDH1 | C0346153 | Breast Cancer, Familial | 12 | CLINGEN |
Hgene | CDH1 | C0009405 | Hereditary Nonpolyposis Colorectal Neoplasms | 6 | CLINGEN |
Hgene | CDH1 | C0024623 | Malignant neoplasm of stomach | 6 | CGI;CTD_human;UNIPROT |
Hgene | CDH1 | C0038356 | Stomach Neoplasms | 6 | CGI;CTD_human |
Hgene | CDH1 | C1112155 | Hereditary non-polyposis colorectal cancer syndrome | 6 | CLINGEN |
Hgene | CDH1 | C1333990 | Hereditary Nonpolyposis Colorectal Cancer | 6 | CLINGEN |
Hgene | CDH1 | C1333991 | Hereditary Non-Polyposis Colon Cancer Type 2 | 6 | CLINGEN |
Hgene | CDH1 | C2936783 | Colorectal cancer, hereditary nonpolyposis, type 1 | 6 | CLINGEN |
Hgene | CDH1 | C0006142 | Malignant neoplasm of breast | 4 | CTD_human;GENOMICS_ENGLAND;UNIPROT |
Hgene | CDH1 | C0033578 | Prostatic Neoplasms | 4 | CTD_human |
Hgene | CDH1 | C0376358 | Malignant neoplasm of prostate | 4 | CTD_human;GENOMICS_ENGLAND |
Hgene | CDH1 | C0678222 | Breast Carcinoma | 4 | CTD_human |
Hgene | CDH1 | C1257931 | Mammary Neoplasms, Human | 4 | CTD_human |
Hgene | CDH1 | C1458155 | Mammary Neoplasms | 4 | CTD_human |
Hgene | CDH1 | C4704874 | Mammary Carcinoma, Human | 4 | CTD_human |
Hgene | CDH1 | C0007097 | Carcinoma | 3 | CTD_human |
Hgene | CDH1 | C0205696 | Anaplastic carcinoma | 3 | CTD_human |
Hgene | CDH1 | C0205697 | Carcinoma, Spindle-Cell | 3 | CTD_human |
Hgene | CDH1 | C0205698 | Undifferentiated carcinoma | 3 | CTD_human |
Hgene | CDH1 | C0205699 | Carcinomatosis | 3 | CTD_human |
Hgene | CDH1 | C0005684 | Malignant neoplasm of urinary bladder | 2 | CTD_human |
Hgene | CDH1 | C0005695 | Bladder Neoplasm | 2 | CTD_human |
Hgene | CDH1 | C0009402 | Colorectal Carcinoma | 2 | CTD_human |
Hgene | CDH1 | C0009404 | Colorectal Neoplasms | 2 | CTD_human |
Hgene | CDH1 | C0019207 | Hepatoma, Morris | 2 | CTD_human |
Hgene | CDH1 | C0019208 | Hepatoma, Novikoff | 2 | CTD_human |
Hgene | CDH1 | C0021367 | Mammary Ductal Carcinoma | 2 | CTD_human |
Hgene | CDH1 | C0023904 | Liver Neoplasms, Experimental | 2 | CTD_human |
Hgene | CDH1 | C0027626 | Neoplasm Invasiveness | 2 | CTD_human |
Hgene | CDH1 | C0027627 | Neoplasm Metastasis | 2 | CTD_human |
Hgene | CDH1 | C0086404 | Experimental Hepatoma | 2 | CTD_human |
Hgene | CDH1 | C0206692 | Carcinoma, Lobular | 2 | CGI;CTD_human;UNIPROT |
Hgene | CDH1 | C1134719 | Invasive Ductal Breast Carcinoma | 2 | CTD_human |
Hgene | CDH1 | C2931456 | Prostate cancer, familial | 2 | CTD_human |
Hgene | CDH1 | C4551988 | BLEPHAROCHEILODONTIC SYNDROME 1 | 2 | GENOMICS_ENGLAND;UNIPROT |
Hgene | CDH1 | C4722327 | PROSTATE CANCER, HEREDITARY, 1 | 2 | CTD_human |
Hgene | CDH1 | C0007137 | Squamous cell carcinoma | 1 | CTD_human |
Hgene | CDH1 | C0007621 | Neoplastic Cell Transformation | 1 | CTD_human |
Hgene | CDH1 | C0009324 | Ulcerative Colitis | 1 | CTD_human |
Hgene | CDH1 | C0010606 | Adenoid Cystic Carcinoma | 1 | CTD_human |
Hgene | CDH1 | C0014170 | Endometrial Neoplasms | 1 | CTD_human |
Hgene | CDH1 | C0014476 | Eperythrozoonosis | 1 | CTD_human |
Hgene | CDH1 | C0024667 | Animal Mammary Neoplasms | 1 | CTD_human |
Hgene | CDH1 | C0024668 | Mammary Neoplasms, Experimental | 1 | CTD_human |
Hgene | CDH1 | C0025500 | Mesothelioma | 1 | CTD_human |
Hgene | CDH1 | C0026936 | Mycoplasma Infections | 1 | CTD_human |
Hgene | CDH1 | C0027645 | Neoplasm Seeding | 1 | CTD_human |
Hgene | CDH1 | C0027659 | Neoplasms, Experimental | 1 | CTD_human |
Hgene | CDH1 | C0027746 | Nerve Degeneration | 1 | CTD_human |
Hgene | CDH1 | C0030297 | Pancreatic Neoplasm | 1 | CTD_human |
Hgene | CDH1 | C0032927 | Precancerous Conditions | 1 | CTD_human |
Hgene | CDH1 | C0036095 | Salivary Gland Neoplasms | 1 | CTD_human |
Hgene | CDH1 | C0079487 | Helicobacter Infections | 1 | CTD_human |
Hgene | CDH1 | C0158646 | Cleft palate with cleft lip | 1 | ORPHANET |
Hgene | CDH1 | C0220636 | Malignant neoplasm of salivary gland | 1 | CTD_human |
Hgene | CDH1 | C0235874 | Disease Exacerbation | 1 | CTD_human |
Hgene | CDH1 | C0282313 | Condition, Preneoplastic | 1 | CTD_human |
Hgene | CDH1 | C0282612 | Prostatic Intraepithelial Neoplasias | 1 | CTD_human |
Hgene | CDH1 | C0346647 | Malignant neoplasm of pancreas | 1 | CTD_human |
Hgene | CDH1 | C0476089 | Endometrial Carcinoma | 1 | CTD_human;GENOMICS_ENGLAND |
Hgene | CDH1 | C0919267 | ovarian neoplasm | 1 | CTD_human |
Hgene | CDH1 | C1140680 | Malignant neoplasm of ovary | 1 | CTD_human;GENOMICS_ENGLAND;UNIPROT |
Hgene | CDH1 | C1176475 | Ductal Carcinoma | 1 | CTD_human |
Hgene | CDH1 | C1257925 | Mammary Carcinoma, Animal | 1 | CTD_human |
Hgene | CDH1 | C1861536 | Blepharo-cheilo-dontic syndrome | 1 | ORPHANET |