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Fusion Gene Summary | |
Fusion Gene ORF analysis | |
Fusion Genomic Features | |
Fusion Protein Features | |
Fusion Gene Sequence | |
Fusion Gene PPI analysis | |
Related Drugs | |
Related Diseases |
Fusion gene:CDH2-LAMA3 (FusionGDB2 ID:15094) |
Fusion Gene Summary for CDH2-LAMA3 |
Fusion gene summary |
Fusion gene information | Fusion gene name: CDH2-LAMA3 | Fusion gene ID: 15094 | Hgene | Tgene | Gene symbol | CDH2 | LAMA3 | Gene ID | 1000 | 3910 |
Gene name | cadherin 2 | laminin subunit alpha 4 | |
Synonyms | CD325|CDHN|CDw325|NCAD | CMD1JJ|LAMA3|LAMA4*-1 | |
Cytomap | 18q12.1 | 6q21 | |
Type of gene | protein-coding | protein-coding | |
Description | cadherin-2N-cadherin 1cadherin 2, type 1, N-cadherin (neuronal)calcium-dependent adhesion protein, neuronalneural cadherin | laminin subunit alpha-4laminin alpha 4 chainlaminin, alpha 4 | |
Modification date | 20200313 | 20200313 | |
UniProtAcc | P19022 | Q16787 | |
Ensembl transtripts involved in fusion gene | ENST00000269141, ENST00000399380, | ENST00000313654, ENST00000399516, ENST00000269217, ENST00000587184, ENST00000588770, | |
Fusion gene scores | * DoF score | 6 X 6 X 4=144 | 20 X 22 X 6=2640 |
# samples | 8 | 21 | |
** MAII score | log2(8/144*10)=-0.84799690655495 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(21/2640*10)=-3.65207669657969 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
Context | PubMed: CDH2 [Title/Abstract] AND LAMA3 [Title/Abstract] AND fusion [Title/Abstract] | ||
Most frequent breakpoint | CDH2(25727637)-LAMA3(21393021), # samples:2 CDH2(25727637)-LAMA3(21394367), # samples:2 | ||
Anticipated loss of major functional domain due to fusion event. |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
Partner | Gene | GO ID | GO term | PubMed ID |
Fusion gene breakpoints across CDH2 (5'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
Fusion gene breakpoints across LAMA3 (3'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Source | Disease | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
ChimerDB4 | LUAD | TCGA-44-7669-01A | CDH2 | chr18 | 25727637 | - | LAMA3 | chr18 | 21393021 | + |
ChimerDB4 | LUAD | TCGA-44-7669-01A | CDH2 | chr18 | 25727637 | - | LAMA3 | chr18 | 21393021 | + |
ChimerDB4 | LUAD | TCGA-44-7669-01A | CDH2 | chr18 | 25727637 | - | LAMA3 | chr18 | 21394367 | + |
ChimerDB4 | LUAD | TCGA-44-7669-01A | CDH2 | chr18 | 25727637 | - | LAMA3 | chr18 | 21394367 | + |
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Fusion Gene ORF analysis for CDH2-LAMA3 |
Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
In-frame | ENST00000269141 | ENST00000313654 | CDH2 | chr18 | 25727637 | - | LAMA3 | chr18 | 21393021 | + |
In-frame | ENST00000269141 | ENST00000399516 | CDH2 | chr18 | 25727637 | - | LAMA3 | chr18 | 21393021 | + |
5CDS-intron | ENST00000269141 | ENST00000269217 | CDH2 | chr18 | 25727637 | - | LAMA3 | chr18 | 21393021 | + |
5CDS-intron | ENST00000269141 | ENST00000587184 | CDH2 | chr18 | 25727637 | - | LAMA3 | chr18 | 21393021 | + |
5CDS-intron | ENST00000269141 | ENST00000588770 | CDH2 | chr18 | 25727637 | - | LAMA3 | chr18 | 21393021 | + |
intron-3CDS | ENST00000399380 | ENST00000313654 | CDH2 | chr18 | 25727637 | - | LAMA3 | chr18 | 21393021 | + |
intron-3CDS | ENST00000399380 | ENST00000399516 | CDH2 | chr18 | 25727637 | - | LAMA3 | chr18 | 21393021 | + |
intron-intron | ENST00000399380 | ENST00000269217 | CDH2 | chr18 | 25727637 | - | LAMA3 | chr18 | 21393021 | + |
intron-intron | ENST00000399380 | ENST00000587184 | CDH2 | chr18 | 25727637 | - | LAMA3 | chr18 | 21393021 | + |
intron-intron | ENST00000399380 | ENST00000588770 | CDH2 | chr18 | 25727637 | - | LAMA3 | chr18 | 21393021 | + |
Frame-shift | ENST00000269141 | ENST00000313654 | CDH2 | chr18 | 25727637 | - | LAMA3 | chr18 | 21394367 | + |
Frame-shift | ENST00000269141 | ENST00000399516 | CDH2 | chr18 | 25727637 | - | LAMA3 | chr18 | 21394367 | + |
5CDS-intron | ENST00000269141 | ENST00000269217 | CDH2 | chr18 | 25727637 | - | LAMA3 | chr18 | 21394367 | + |
5CDS-intron | ENST00000269141 | ENST00000587184 | CDH2 | chr18 | 25727637 | - | LAMA3 | chr18 | 21394367 | + |
5CDS-intron | ENST00000269141 | ENST00000588770 | CDH2 | chr18 | 25727637 | - | LAMA3 | chr18 | 21394367 | + |
intron-3CDS | ENST00000399380 | ENST00000313654 | CDH2 | chr18 | 25727637 | - | LAMA3 | chr18 | 21394367 | + |
intron-3CDS | ENST00000399380 | ENST00000399516 | CDH2 | chr18 | 25727637 | - | LAMA3 | chr18 | 21394367 | + |
intron-intron | ENST00000399380 | ENST00000269217 | CDH2 | chr18 | 25727637 | - | LAMA3 | chr18 | 21394367 | + |
intron-intron | ENST00000399380 | ENST00000587184 | CDH2 | chr18 | 25727637 | - | LAMA3 | chr18 | 21394367 | + |
intron-intron | ENST00000399380 | ENST00000588770 | CDH2 | chr18 | 25727637 | - | LAMA3 | chr18 | 21394367 | + |
ORFfinder result based on the fusion transcript sequence of in-frame fusion genes. |
Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | Seq length (transcript) | BP loci (transcript) | Predicted start (transcript) | Predicted stop (transcript) | Seq length (amino acids) |
ENST00000269141 | CDH2 | chr18 | 25727637 | - | ENST00000313654 | LAMA3 | chr18 | 21393021 | + | 9275 | 596 | 25 | 8856 | 2943 |
ENST00000269141 | CDH2 | chr18 | 25727637 | - | ENST00000399516 | LAMA3 | chr18 | 21393021 | + | 8689 | 596 | 25 | 8688 | 2888 |
DeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated. |
Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | No-coding score | Coding score |
ENST00000269141 | ENST00000313654 | CDH2 | chr18 | 25727637 | - | LAMA3 | chr18 | 21393021 | + | 0.000503359 | 0.9994966 |
ENST00000269141 | ENST00000399516 | CDH2 | chr18 | 25727637 | - | LAMA3 | chr18 | 21393021 | + | 0.000665409 | 0.9993345 |
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Fusion Genomic Features for CDH2-LAMA3 |
FusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints. |
Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | 1-p | p (fusion gene breakpoint) |
CDH2 | chr18 | 25727636 | - | LAMA3 | chr18 | 21393020 | + | 0.000578183 | 0.99942183 |
CDH2 | chr18 | 25727636 | - | LAMA3 | chr18 | 21394366 | + | 3.21E-06 | 0.9999968 |
CDH2 | chr18 | 25727636 | - | LAMA3 | chr18 | 21393020 | + | 0.000578183 | 0.99942183 |
CDH2 | chr18 | 25727636 | - | LAMA3 | chr18 | 21394366 | + | 3.21E-06 | 0.9999968 |
Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page. |
Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page. |
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Fusion Protein Features for CDH2-LAMA3 |
Go to FGviewer for the breakpoints of chr18:25727637-chr18:21393021 - FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels. |
Main function of each fusion partner protein. (from UniProt) |
Hgene | Tgene |
CDH2 | LAMA3 |
FUNCTION: Calcium-dependent cell adhesion protein; preferentially mediates homotypic cell-cell adhesion by dimerization with a CDH2 chain from another cell. Cadherins may thus contribute to the sorting of heterogeneous cell types. Acts as a regulator of neural stem cells quiescence by mediating anchorage of neural stem cells to ependymocytes in the adult subependymal zone: upon cleavage by MMP24, CDH2-mediated anchorage is affected, leading to modulate neural stem cell quiescence. Plays a role in cell-to-cell junction formation between pancreatic beta cells and neural crest stem (NCS) cells, promoting the formation of processes by NCS cells (By similarity). CDH2 may be involved in neuronal recognition mechanism. In hippocampal neurons, may regulate dendritic spine density. {ECO:0000250|UniProtKB:P15116}. | FUNCTION: Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organization of cells into tissues during embryonic development by interacting with other extracellular matrix components.; FUNCTION: Laminin-5 is thought to be involved in (1) cell adhesion via integrin alpha-3/beta-1 in focal adhesion and integrin alpha-6/beta-4 in hemidesmosomes, (2) signal transduction via tyrosine phosphorylation of pp125-FAK and p80, (3) differentiation of keratinocytes. |
Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Tgene | LAMA3 | chr18:25727637 | chr18:21393021 | ENST00000313654 | 12 | 75 | 1852_1941 | 580.3333333333334 | 3334.0 | Coiled coil | Ontology_term=ECO:0000255 | |
Tgene | LAMA3 | chr18:25727637 | chr18:21393021 | ENST00000313654 | 12 | 75 | 1987_2169 | 580.3333333333334 | 3334.0 | Coiled coil | Ontology_term=ECO:0000255 | |
Tgene | LAMA3 | chr18:25727637 | chr18:21393021 | ENST00000313654 | 12 | 75 | 2322_2388 | 580.3333333333334 | 3334.0 | Coiled coil | Ontology_term=ECO:0000255 | |
Tgene | LAMA3 | chr18:25727637 | chr18:21393021 | ENST00000399516 | 12 | 74 | 1852_1941 | 580.3333333333334 | 3278.0 | Coiled coil | Ontology_term=ECO:0000255 | |
Tgene | LAMA3 | chr18:25727637 | chr18:21393021 | ENST00000399516 | 12 | 74 | 1987_2169 | 580.3333333333334 | 3278.0 | Coiled coil | Ontology_term=ECO:0000255 | |
Tgene | LAMA3 | chr18:25727637 | chr18:21393021 | ENST00000399516 | 12 | 74 | 2322_2388 | 580.3333333333334 | 3278.0 | Coiled coil | Ontology_term=ECO:0000255 | |
Tgene | LAMA3 | chr18:25727637 | chr18:21393021 | ENST00000587184 | 0 | 37 | 1852_1941 | 0.0 | 1669.0 | Coiled coil | Ontology_term=ECO:0000255 | |
Tgene | LAMA3 | chr18:25727637 | chr18:21393021 | ENST00000587184 | 0 | 37 | 1987_2169 | 0.0 | 1669.0 | Coiled coil | Ontology_term=ECO:0000255 | |
Tgene | LAMA3 | chr18:25727637 | chr18:21393021 | ENST00000587184 | 0 | 37 | 2322_2388 | 0.0 | 1669.0 | Coiled coil | Ontology_term=ECO:0000255 | |
Tgene | LAMA3 | chr18:25727637 | chr18:21393021 | ENST00000313654 | 12 | 75 | 1266_1311 | 580.3333333333334 | 3334.0 | Domain | Laminin EGF-like 9 | |
Tgene | LAMA3 | chr18:25727637 | chr18:21393021 | ENST00000313654 | 12 | 75 | 1312_1355 | 580.3333333333334 | 3334.0 | Domain | Laminin EGF-like 10 | |
Tgene | LAMA3 | chr18:25727637 | chr18:21393021 | ENST00000313654 | 12 | 75 | 1356_1404 | 580.3333333333334 | 3334.0 | Domain | Laminin EGF-like 11 | |
Tgene | LAMA3 | chr18:25727637 | chr18:21393021 | ENST00000313654 | 12 | 75 | 1405_1455 | 580.3333333333334 | 3334.0 | Domain | Laminin EGF-like 12 | |
Tgene | LAMA3 | chr18:25727637 | chr18:21393021 | ENST00000313654 | 12 | 75 | 1476_1653 | 580.3333333333334 | 3334.0 | Domain | Laminin IV type A | |
Tgene | LAMA3 | chr18:25727637 | chr18:21393021 | ENST00000313654 | 12 | 75 | 1687_1733 | 580.3333333333334 | 3334.0 | Domain | Laminin EGF-like 13 | |
Tgene | LAMA3 | chr18:25727637 | chr18:21393021 | ENST00000313654 | 12 | 75 | 1734_1786 | 580.3333333333334 | 3334.0 | Domain | Laminin EGF-like 14 | |
Tgene | LAMA3 | chr18:25727637 | chr18:21393021 | ENST00000313654 | 12 | 75 | 1787_1821 | 580.3333333333334 | 3334.0 | Domain | Laminin EGF-like 15%3B truncated | |
Tgene | LAMA3 | chr18:25727637 | chr18:21393021 | ENST00000313654 | 12 | 75 | 2390_2591 | 580.3333333333334 | 3334.0 | Domain | Laminin G-like 1 | |
Tgene | LAMA3 | chr18:25727637 | chr18:21393021 | ENST00000313654 | 12 | 75 | 2598_2760 | 580.3333333333334 | 3334.0 | Domain | Laminin G-like 2 | |
Tgene | LAMA3 | chr18:25727637 | chr18:21393021 | ENST00000313654 | 12 | 75 | 2767_2927 | 580.3333333333334 | 3334.0 | Domain | Laminin G-like 3 | |
Tgene | LAMA3 | chr18:25727637 | chr18:21393021 | ENST00000313654 | 12 | 75 | 2986_3150 | 580.3333333333334 | 3334.0 | Domain | Laminin G-like 4 | |
Tgene | LAMA3 | chr18:25727637 | chr18:21393021 | ENST00000313654 | 12 | 75 | 3157_3330 | 580.3333333333334 | 3334.0 | Domain | Laminin G-like 5 | |
Tgene | LAMA3 | chr18:25727637 | chr18:21393021 | ENST00000313654 | 12 | 75 | 590_630 | 580.3333333333334 | 3334.0 | Domain | Laminin EGF-like 6 | |
Tgene | LAMA3 | chr18:25727637 | chr18:21393021 | ENST00000313654 | 12 | 75 | 631_683 | 580.3333333333334 | 3334.0 | Domain | Laminin EGF-like 7 | |
Tgene | LAMA3 | chr18:25727637 | chr18:21393021 | ENST00000313654 | 12 | 75 | 684_728 | 580.3333333333334 | 3334.0 | Domain | Laminin EGF-like 8 | |
Tgene | LAMA3 | chr18:25727637 | chr18:21393021 | ENST00000399516 | 12 | 74 | 1266_1311 | 580.3333333333334 | 3278.0 | Domain | Laminin EGF-like 9 | |
Tgene | LAMA3 | chr18:25727637 | chr18:21393021 | ENST00000399516 | 12 | 74 | 1312_1355 | 580.3333333333334 | 3278.0 | Domain | Laminin EGF-like 10 | |
Tgene | LAMA3 | chr18:25727637 | chr18:21393021 | ENST00000399516 | 12 | 74 | 1356_1404 | 580.3333333333334 | 3278.0 | Domain | Laminin EGF-like 11 | |
Tgene | LAMA3 | chr18:25727637 | chr18:21393021 | ENST00000399516 | 12 | 74 | 1405_1455 | 580.3333333333334 | 3278.0 | Domain | Laminin EGF-like 12 | |
Tgene | LAMA3 | chr18:25727637 | chr18:21393021 | ENST00000399516 | 12 | 74 | 1476_1653 | 580.3333333333334 | 3278.0 | Domain | Laminin IV type A | |
Tgene | LAMA3 | chr18:25727637 | chr18:21393021 | ENST00000399516 | 12 | 74 | 1687_1733 | 580.3333333333334 | 3278.0 | Domain | Laminin EGF-like 13 | |
Tgene | LAMA3 | chr18:25727637 | chr18:21393021 | ENST00000399516 | 12 | 74 | 1734_1786 | 580.3333333333334 | 3278.0 | Domain | Laminin EGF-like 14 | |
Tgene | LAMA3 | chr18:25727637 | chr18:21393021 | ENST00000399516 | 12 | 74 | 1787_1821 | 580.3333333333334 | 3278.0 | Domain | Laminin EGF-like 15%3B truncated | |
Tgene | LAMA3 | chr18:25727637 | chr18:21393021 | ENST00000399516 | 12 | 74 | 2390_2591 | 580.3333333333334 | 3278.0 | Domain | Laminin G-like 1 | |
Tgene | LAMA3 | chr18:25727637 | chr18:21393021 | ENST00000399516 | 12 | 74 | 2598_2760 | 580.3333333333334 | 3278.0 | Domain | Laminin G-like 2 | |
Tgene | LAMA3 | chr18:25727637 | chr18:21393021 | ENST00000399516 | 12 | 74 | 2767_2927 | 580.3333333333334 | 3278.0 | Domain | Laminin G-like 3 | |
Tgene | LAMA3 | chr18:25727637 | chr18:21393021 | ENST00000399516 | 12 | 74 | 2986_3150 | 580.3333333333334 | 3278.0 | Domain | Laminin G-like 4 | |
Tgene | LAMA3 | chr18:25727637 | chr18:21393021 | ENST00000399516 | 12 | 74 | 3157_3330 | 580.3333333333334 | 3278.0 | Domain | Laminin G-like 5 | |
Tgene | LAMA3 | chr18:25727637 | chr18:21393021 | ENST00000399516 | 12 | 74 | 590_630 | 580.3333333333334 | 3278.0 | Domain | Laminin EGF-like 6 | |
Tgene | LAMA3 | chr18:25727637 | chr18:21393021 | ENST00000399516 | 12 | 74 | 631_683 | 580.3333333333334 | 3278.0 | Domain | Laminin EGF-like 7 | |
Tgene | LAMA3 | chr18:25727637 | chr18:21393021 | ENST00000399516 | 12 | 74 | 684_728 | 580.3333333333334 | 3278.0 | Domain | Laminin EGF-like 8 | |
Tgene | LAMA3 | chr18:25727637 | chr18:21393021 | ENST00000587184 | 0 | 37 | 1266_1311 | 0.0 | 1669.0 | Domain | Laminin EGF-like 9 | |
Tgene | LAMA3 | chr18:25727637 | chr18:21393021 | ENST00000587184 | 0 | 37 | 1312_1355 | 0.0 | 1669.0 | Domain | Laminin EGF-like 10 | |
Tgene | LAMA3 | chr18:25727637 | chr18:21393021 | ENST00000587184 | 0 | 37 | 1356_1404 | 0.0 | 1669.0 | Domain | Laminin EGF-like 11 | |
Tgene | LAMA3 | chr18:25727637 | chr18:21393021 | ENST00000587184 | 0 | 37 | 1405_1455 | 0.0 | 1669.0 | Domain | Laminin EGF-like 12 | |
Tgene | LAMA3 | chr18:25727637 | chr18:21393021 | ENST00000587184 | 0 | 37 | 1476_1653 | 0.0 | 1669.0 | Domain | Laminin IV type A | |
Tgene | LAMA3 | chr18:25727637 | chr18:21393021 | ENST00000587184 | 0 | 37 | 1687_1733 | 0.0 | 1669.0 | Domain | Laminin EGF-like 13 | |
Tgene | LAMA3 | chr18:25727637 | chr18:21393021 | ENST00000587184 | 0 | 37 | 1734_1786 | 0.0 | 1669.0 | Domain | Laminin EGF-like 14 | |
Tgene | LAMA3 | chr18:25727637 | chr18:21393021 | ENST00000587184 | 0 | 37 | 1787_1821 | 0.0 | 1669.0 | Domain | Laminin EGF-like 15%3B truncated | |
Tgene | LAMA3 | chr18:25727637 | chr18:21393021 | ENST00000587184 | 0 | 37 | 2390_2591 | 0.0 | 1669.0 | Domain | Laminin G-like 1 | |
Tgene | LAMA3 | chr18:25727637 | chr18:21393021 | ENST00000587184 | 0 | 37 | 2598_2760 | 0.0 | 1669.0 | Domain | Laminin G-like 2 | |
Tgene | LAMA3 | chr18:25727637 | chr18:21393021 | ENST00000587184 | 0 | 37 | 2767_2927 | 0.0 | 1669.0 | Domain | Laminin G-like 3 | |
Tgene | LAMA3 | chr18:25727637 | chr18:21393021 | ENST00000587184 | 0 | 37 | 2986_3150 | 0.0 | 1669.0 | Domain | Laminin G-like 4 | |
Tgene | LAMA3 | chr18:25727637 | chr18:21393021 | ENST00000587184 | 0 | 37 | 299_355 | 0.0 | 1669.0 | Domain | Laminin EGF-like 1 | |
Tgene | LAMA3 | chr18:25727637 | chr18:21393021 | ENST00000587184 | 0 | 37 | 3157_3330 | 0.0 | 1669.0 | Domain | Laminin G-like 5 | |
Tgene | LAMA3 | chr18:25727637 | chr18:21393021 | ENST00000587184 | 0 | 37 | 356_425 | 0.0 | 1669.0 | Domain | Laminin EGF-like 2 | |
Tgene | LAMA3 | chr18:25727637 | chr18:21393021 | ENST00000587184 | 0 | 37 | 426_469 | 0.0 | 1669.0 | Domain | Laminin EGF-like 3 | |
Tgene | LAMA3 | chr18:25727637 | chr18:21393021 | ENST00000587184 | 0 | 37 | 43_298 | 0.0 | 1669.0 | Domain | Laminin N-terminal | |
Tgene | LAMA3 | chr18:25727637 | chr18:21393021 | ENST00000587184 | 0 | 37 | 491_535 | 0.0 | 1669.0 | Domain | Laminin EGF-like 4 | |
Tgene | LAMA3 | chr18:25727637 | chr18:21393021 | ENST00000587184 | 0 | 37 | 536_588 | 0.0 | 1669.0 | Domain | Laminin EGF-like 5 | |
Tgene | LAMA3 | chr18:25727637 | chr18:21393021 | ENST00000587184 | 0 | 37 | 590_630 | 0.0 | 1669.0 | Domain | Laminin EGF-like 6 | |
Tgene | LAMA3 | chr18:25727637 | chr18:21393021 | ENST00000587184 | 0 | 37 | 631_683 | 0.0 | 1669.0 | Domain | Laminin EGF-like 7 | |
Tgene | LAMA3 | chr18:25727637 | chr18:21393021 | ENST00000587184 | 0 | 37 | 684_728 | 0.0 | 1669.0 | Domain | Laminin EGF-like 8 | |
Tgene | LAMA3 | chr18:25727637 | chr18:21393021 | ENST00000313654 | 12 | 75 | 2278_2280 | 580.3333333333334 | 3334.0 | Motif | Cell attachment site | |
Tgene | LAMA3 | chr18:25727637 | chr18:21393021 | ENST00000399516 | 12 | 74 | 2278_2280 | 580.3333333333334 | 3278.0 | Motif | Cell attachment site | |
Tgene | LAMA3 | chr18:25727637 | chr18:21393021 | ENST00000587184 | 0 | 37 | 2278_2280 | 0.0 | 1669.0 | Motif | Cell attachment site | |
Tgene | LAMA3 | chr18:25727637 | chr18:21393021 | ENST00000313654 | 12 | 75 | 1266_1465 | 580.3333333333334 | 3334.0 | Region | Note=Domain III B | |
Tgene | LAMA3 | chr18:25727637 | chr18:21393021 | ENST00000313654 | 12 | 75 | 1654_1821 | 580.3333333333334 | 3334.0 | Region | Note=Domain III A | |
Tgene | LAMA3 | chr18:25727637 | chr18:21393021 | ENST00000313654 | 12 | 75 | 1822_2389 | 580.3333333333334 | 3334.0 | Region | Note=Domain II and I | |
Tgene | LAMA3 | chr18:25727637 | chr18:21393021 | ENST00000313654 | 12 | 75 | 796_1265 | 580.3333333333334 | 3334.0 | Region | Note=Domain IV 1 (domain IV B) | |
Tgene | LAMA3 | chr18:25727637 | chr18:21393021 | ENST00000399516 | 12 | 74 | 1266_1465 | 580.3333333333334 | 3278.0 | Region | Note=Domain III B | |
Tgene | LAMA3 | chr18:25727637 | chr18:21393021 | ENST00000399516 | 12 | 74 | 1654_1821 | 580.3333333333334 | 3278.0 | Region | Note=Domain III A | |
Tgene | LAMA3 | chr18:25727637 | chr18:21393021 | ENST00000399516 | 12 | 74 | 1822_2389 | 580.3333333333334 | 3278.0 | Region | Note=Domain II and I | |
Tgene | LAMA3 | chr18:25727637 | chr18:21393021 | ENST00000399516 | 12 | 74 | 796_1265 | 580.3333333333334 | 3278.0 | Region | Note=Domain IV 1 (domain IV B) | |
Tgene | LAMA3 | chr18:25727637 | chr18:21393021 | ENST00000587184 | 0 | 37 | 1266_1465 | 0.0 | 1669.0 | Region | Note=Domain III B | |
Tgene | LAMA3 | chr18:25727637 | chr18:21393021 | ENST00000587184 | 0 | 37 | 1654_1821 | 0.0 | 1669.0 | Region | Note=Domain III A | |
Tgene | LAMA3 | chr18:25727637 | chr18:21393021 | ENST00000587184 | 0 | 37 | 1822_2389 | 0.0 | 1669.0 | Region | Note=Domain II and I | |
Tgene | LAMA3 | chr18:25727637 | chr18:21393021 | ENST00000587184 | 0 | 37 | 298_728 | 0.0 | 1669.0 | Region | Note=Domain V | |
Tgene | LAMA3 | chr18:25727637 | chr18:21393021 | ENST00000587184 | 0 | 37 | 796_1265 | 0.0 | 1669.0 | Region | Note=Domain IV 1 (domain IV B) |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | CDH2 | chr18:25727637 | chr18:21393021 | ENST00000269141 | - | 2 | 16 | 863_878 | 57.333333333333336 | 907.0 | Compositional bias | Note=Ser-rich |
Hgene | CDH2 | chr18:25727637 | chr18:21393021 | ENST00000269141 | - | 2 | 16 | 160_267 | 57.333333333333336 | 907.0 | Domain | Cadherin 1 |
Hgene | CDH2 | chr18:25727637 | chr18:21393021 | ENST00000269141 | - | 2 | 16 | 268_382 | 57.333333333333336 | 907.0 | Domain | Cadherin 2 |
Hgene | CDH2 | chr18:25727637 | chr18:21393021 | ENST00000269141 | - | 2 | 16 | 383_497 | 57.333333333333336 | 907.0 | Domain | Cadherin 3 |
Hgene | CDH2 | chr18:25727637 | chr18:21393021 | ENST00000269141 | - | 2 | 16 | 498_603 | 57.333333333333336 | 907.0 | Domain | Cadherin 4 |
Hgene | CDH2 | chr18:25727637 | chr18:21393021 | ENST00000269141 | - | 2 | 16 | 604_714 | 57.333333333333336 | 907.0 | Domain | Cadherin 5 |
Hgene | CDH2 | chr18:25727637 | chr18:21393021 | ENST00000269141 | - | 2 | 16 | 160_724 | 57.333333333333336 | 907.0 | Topological domain | Extracellular |
Hgene | CDH2 | chr18:25727637 | chr18:21393021 | ENST00000269141 | - | 2 | 16 | 746_906 | 57.333333333333336 | 907.0 | Topological domain | Cytoplasmic |
Hgene | CDH2 | chr18:25727637 | chr18:21393021 | ENST00000269141 | - | 2 | 16 | 725_745 | 57.333333333333336 | 907.0 | Transmembrane | Helical |
Tgene | LAMA3 | chr18:25727637 | chr18:21393021 | ENST00000313654 | 12 | 75 | 299_355 | 580.3333333333334 | 3334.0 | Domain | Laminin EGF-like 1 | |
Tgene | LAMA3 | chr18:25727637 | chr18:21393021 | ENST00000313654 | 12 | 75 | 356_425 | 580.3333333333334 | 3334.0 | Domain | Laminin EGF-like 2 | |
Tgene | LAMA3 | chr18:25727637 | chr18:21393021 | ENST00000313654 | 12 | 75 | 426_469 | 580.3333333333334 | 3334.0 | Domain | Laminin EGF-like 3 | |
Tgene | LAMA3 | chr18:25727637 | chr18:21393021 | ENST00000313654 | 12 | 75 | 43_298 | 580.3333333333334 | 3334.0 | Domain | Laminin N-terminal | |
Tgene | LAMA3 | chr18:25727637 | chr18:21393021 | ENST00000313654 | 12 | 75 | 491_535 | 580.3333333333334 | 3334.0 | Domain | Laminin EGF-like 4 | |
Tgene | LAMA3 | chr18:25727637 | chr18:21393021 | ENST00000313654 | 12 | 75 | 536_588 | 580.3333333333334 | 3334.0 | Domain | Laminin EGF-like 5 | |
Tgene | LAMA3 | chr18:25727637 | chr18:21393021 | ENST00000399516 | 12 | 74 | 299_355 | 580.3333333333334 | 3278.0 | Domain | Laminin EGF-like 1 | |
Tgene | LAMA3 | chr18:25727637 | chr18:21393021 | ENST00000399516 | 12 | 74 | 356_425 | 580.3333333333334 | 3278.0 | Domain | Laminin EGF-like 2 | |
Tgene | LAMA3 | chr18:25727637 | chr18:21393021 | ENST00000399516 | 12 | 74 | 426_469 | 580.3333333333334 | 3278.0 | Domain | Laminin EGF-like 3 | |
Tgene | LAMA3 | chr18:25727637 | chr18:21393021 | ENST00000399516 | 12 | 74 | 43_298 | 580.3333333333334 | 3278.0 | Domain | Laminin N-terminal | |
Tgene | LAMA3 | chr18:25727637 | chr18:21393021 | ENST00000399516 | 12 | 74 | 491_535 | 580.3333333333334 | 3278.0 | Domain | Laminin EGF-like 4 | |
Tgene | LAMA3 | chr18:25727637 | chr18:21393021 | ENST00000399516 | 12 | 74 | 536_588 | 580.3333333333334 | 3278.0 | Domain | Laminin EGF-like 5 | |
Tgene | LAMA3 | chr18:25727637 | chr18:21393021 | ENST00000313654 | 12 | 75 | 298_728 | 580.3333333333334 | 3334.0 | Region | Note=Domain V | |
Tgene | LAMA3 | chr18:25727637 | chr18:21393021 | ENST00000399516 | 12 | 74 | 298_728 | 580.3333333333334 | 3278.0 | Region | Note=Domain V |
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Fusion Gene Sequence for CDH2-LAMA3 |
For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones. |
>In-frame_ENST00000269141_ENST00000313654_TCGA-44-7669-01A_CDH2_chr18_25727637_-_LAMA3_chr18_21393021_length(transcript)=9275nt_BP=596nt CCTCCACCGGCCAAGGTCCCCGCCGCTGCATCCCTCGCGGCTTCCGCTGCGCTCCGGGCCGGAGCCGAGCCGCCTGCGCTGCCACAGCAG CCGCCTCCACACACTCGCAGACGCTCACACGCTCTCCCTCCCTGTTCCCCCGCCCCCTCCCCAGCTCCTTGATCTCTGGGTCTGTTTTAT TACTCCTGGTGCGAGTCCCGCGGACTCCGCGGCCCGCTATTTGTCATCAGCTCGCTCTCCATTGGCGGGGAGCGGAGAGCAGCGAAGAAG GGGGTGGGGAGGGGAGGGGAAGGGAAGGGGGTGGAAACTGCCTGGAGCCGTTTCTCCGCGCCGCTGTTGGTGCTGCCGCTGCCTCCTCCT CCTCCGCCGCCGCCGCCGCCGCCGCCGCCTCCTCCGGCTCTTCGCTCGGCCCCTCTCCGCCTCCATGTGCCGGATAGCGGGAGCGCTGCG GACCCTGCTGCCGCTGCTGGCGGCCCTGCTTCAGGCGTCTGTAGAGGCTTCTGGTGAAATCGCATTATGCAAGACTGGATTTCCTGAAGA TGTTTACAGTGCAGTCTTATCGAAGGATGTGCATGAAGGACAGCCTCTTCTCAATGGTTCCAGCAGTGCTTGTGACCCAGCTGGTACCAT CAACTCCAATTTGGGGTATTGCCAATGCAAGCTTCATGTTGAAGGTCCTACTTGTAGCCGCTGCAAACTGTTATATTGGAATCTGGACAA AGAAAACCCCAGTGGATGTTCAGAATGCAAGTGCCATAAGGCGGGAACAGTGAGTGGAACTGGAGAGTGTAGGCAGGGAGATGGTGACTG TCACTGCAAGTCCCATGTGGGTGGCGATTCCTGCGACACCTGTGAAGATGGATATTTTGCTTTGGAAAAGAGCAATTACTTTGGGTGTCA AGGGTGTCAGTGTGACATTGGTGGGGCATTGTCCTCCATGTGCAGTGGGCCCTCGGGAGTGTGCCAGTGCCGAGAGCATGTCGTGGGAAA GGTGTGCCAGCGGCCTGAAAACAACTACTATTTCCCAGATTTGCATCATATGAAGTATGAGATTGAAGACGGCAGCACACCTAATGGGAG AGACCTTCGATTTGGATTTGATCCGCTGGCATTTCCTGAGTTTAGCTGGAGAGGATATGCCCAAATGACCTCAGTACAGAATGATGTAAG AATAACATTGAATGTAGGGAAGTCAAGTGGCTCCTTGTTTCGTGTTATTCTGAGATACGTTAACCCTGGAACTGAAGCAGTATCTGGCCA TATAACTATTTATCCATCCTGGGGTGCTGCTCAAAGCAAAGAGATCATCTTCCTGCCGAGTAAGGAGCCAGCCTTTGTCACTGTCCCTGG AAATGGTTTTGCAGACCCATTTTCAATCACACCAGGAATATGGGTTGCTTGTATTAAGGCAGAAGGAGTCCTTCTGGATTACCTGGTGCT GCTCCCCAGGGACTACTATGAAGCCTCTGTACTGCAGCTGCCAGTCACAGAACCATGTGCCTACGCAGGACCTCCCCAAGAAAATTGCTT ACTCTACCAGCATTTGCCAGTGACCAGATTCCCCTGTACCCTGGCTTGTGAGGCCAGACACTTCCTGCTTGATGGGGAGCCAAGACCCGT GGCAGTGAGGCAGCCCACACCTGCACACCCTGTCATGGTGGACCTCAGCGGGAGAGAGGTGGAATTGCATCTGCGGCTGCGCATCCCACA GGTTGGCCACTACGTGGTTGTGGTCGAGTATTCCACGGAGGCAGCTCAGCTGTTTGTGGTTGATGTGAATGTGAAGAGCTCCGGGTCTGT TCTGGCAGGCCAGGTGAACATTTACAGCTGCAACTACAGTGTTCTCTGCCGGAGTGCTGTGATTGATCACATGAGCCGCATCGCCATGTA TGAGCTATTGGCAGATGCAGACATTCAGCTCAAGGGACACATGGCCCGATTCCTTCTGCATCAAGTTTGTATCATACCTATTGAAGAATT CTCAGCTGAGTATGTGAGACCACAAGTCCACTGCATTGCCAGTTATGGGCGATTTGTCAATCAAAGTGCCACCTGTGTCTCCTTGGCCCA TGAAACTCCTCCAACAGCATTAATTTTGGATGTTCTAAGTGGCAGGCCTTTCCCTCACCTGCCCCAGCAGTCGTCACCTTCTGTTGATGT TCTTCCTGGGGTCACCTTGAAGGCACCGCAGAATCAAGTGACCCTGAGAGGACGTGTACCACACCTGGGCCGATACGTCTTTGTCATCCA TTTTTACCAAGCAGCGCACCCGACGTTTCCCGCGCAGGTGTCGGTGGATGGCGGGTGGCCACGGGCAGGCTCCTTCCATGCCTCTTTTTG CCCCCATGTGCTTGGCTGCCGGGATCAAGTGATTGCCGAAGGCCAGATTGAGTTTGACATCTCAGAGCCTGAAGTGGCCGCAACTGTGAA GGTTCCAGAAGGAAAGTCCTTGGTTTTGGTCCGTGTTCTAGTGGTGCCTGCAGAAAACTATGACTACCAAATACTTCACAAAAAATCCAT GGACAAGTCACTCGAGTTTATCACCAATTGTGGAAAAAACAGCTTTTACCTTGACCCCCAGACAGCCTCCAGATTCTGTAAGAATTCCGC CAGGTCCCTGGTGGCCTTTTACCACAAGGGCGCCCTGCCTTGTGAGTGCCACCCCACTGGGGCCACCGGCCCTCACTGCAGCCCTGAGGG TGGGCAGTGCCCATGCCAGCCCAACGTCATCGGGCGGCAGTGCACCCGCTGTGCAACAGGCCACTACGGATTCCCACGCTGCAAGCCGTG CAGCTGTGGTCGGCGCCTTTGTGAAGAGATGACGGGGCAGTGCCGCTGCCCTCCCCGCACGGTCAGGCCCCAGTGTGAGGTGTGTGAGAC ACACTCATTCAGCTTCCACCCCATGGCCGGCTGCGAAGGCTGCAACTGTTCCAGGAGGGGCACCATCGAGGCTGCCATGCCGGAGTGTGA CCGGGACAGCGGGCAGTGCAGATGCAAGCCCAGAATCACAGGGCGGCAGTGTGACCGATGTGCTTCCGGGTTTTACCGCTTTCCTGAGTG TGTTCCCTGCAATTGCAACAGAGATGGGACTGAGCCAGGAGTGTGTGACCCAGGGACCGGGGCTTGCCTCTGCAAGGAAAATGTAGAAGG CACAGAGTGTAATGTGTGTCGAGAAGGCTCATTCCATTTGGACCCAGCCAATCTCAAGGGTTGTACCAGCTGTTTCTGTTTTGGAGTAAA TAATCAATGTCACAGCTCACATAAGCGAAGGACTAAGTTTGTGGATATGCTGGGCTGGCACCTGGAGACAGCAGACAGAGTGGACATCCC TGTCTCTTTCAACCCAGGCAGCAACAGTATGGTGGCGGATCTCCAGGAGCTGCCCGCAACCATCCACAGCGCGTCCTGGGTCGCACCCAC CTCCTACCTGGGGGACAAGGTTTCTTCATATGGTGGTTACCTCACTTACCAAGCCAAGTCCTTTGGCTTGCCTGGCGACATGGTTCTTCT GGAAAAGAAGCCGGATGTACAGCTCACTGGTCAGCACATGTCCATCATCTATGAGGAGACAAACACCCCACGGCCAGACCGGCTGCATCA TGGACGAGTGCACGTGGTCGAGGGAAACTTCAGACATGCCAGCAGCCGTGCCCCAGTGTCTAGGGAGGAGCTGATGACAGTGCTGTCTAG ACTGGCAGATGTGCGCATCCAAGGCCTCTACTTCACAGAGACTCAAAGGCTCACCCTGAGCGAGGTGGGGCTAGAGGAAGCCTCTGACAC AGGAAGTGGGCGCATAGCACTTGCTGTGGAAATCTGTGCCTGCCCCCCTGCCTACGCTGGTGACTCTTGTCAGGGTTGTAGCCCTGGATA CTATCGGGATCATAAAGGCTTGTATACCGGACGGTGTGTTCCCTGCAATTGCAACGGACATTCAAATCAATGCCAGGATGGCTCAGGCAT ATGTGTTAACTGTCAGCACAACACCGCGGGAGAGCACTGTGAACGCTGCCAGGAGGGCTACTATGGCAACGCCGTCCACGGATCCTGCAG GGCCTGCCCATGTCCTCACACTAACAGCTTTGCCACTGGCTGTGTGGTGAATGGGGGAGACGTGCGGTGCTCCTGCAAAGCTGGGTACAC AGGAACACAGTGTGAAAGGTGTGCACCGGGATATTTCGGGAATCCCCAGAAATTCGGAGGTAGCTGCCAACCATGCAGTTGTAACAGCAA TGGCCAGCTGGGCAGCTGTCATCCCCTGACTGGAGACTGCATAAACCAAGAACCCAAAGATAGCAGCCCTGCAGAAGAATGTGATGATTG CGACAGCTGTGTGATGACCCTCCTGAACGACCTGGCCACCATGGGCGAGCAGCTCCGCCTGGTCAAGTCTCAGCTGCAGGGCCTGAGTGC CAGCGCAGGGCTTCTGGAGCAGATGAGGCACATGGAGACCCAGGCCAAGGACCTGAGGAATCAGTTGCTCAACTACCGTTCTGCCATTTC AAATCATGGATCAAAAATAGAAGGCCTGGAAAGAGAACTGACTGATTTGAATCAAGAATTTGAGACTTTGCAAGAAAAGGCTCAAGTAAA TTCCAGAAAAGCACAAACATTAAACAACAATGTTAATCGGGCAACACAAAGCGCAAAAGAACTGGATGTGAAGATTAAAAATGTCATCCG GAATGTGCACATTCTTTTAAAGCAGATCTCTGGGACAGATGGAGAGGGAAACAACGTGCCTTCAGGTGACTTTTCCAGAGAGTGGGCTGA AGCCCAGCGCATGATGAGGGAACTGCGGAACAGGAACTTTGGAAAGCACCTCAGAGAAGCAGAAGCTGATAAAAGGGAGTCGCAGCTCTT GCTGAACCGGATAAGGACCTGGCAGAAAACCCACCAGGGGGAGAACAATGGGCTTGCTAACAGTATCCGGGATTCTTTAAATGAATACGA AGCCAAACTCAGTGACCTTCGTGCTCGGCTGCAGGAGGCAGCTGCCCAAGCCAAGCAGGCAAATGGCTTGAACCAAGAAAACGAGAGAGC TTTGGGAGCCATTCAGAGACAAGTGAAAGAAATAAATTCCCTGCAGAGTGATTTCACCAAGTATCTAACCACTGCAGACTCATCTTTGTT GCAAACCAACATTGCGCTGCAGCTGATGGAGAAAAGCCAGAAGGAATATGAAAAATTAGCTGCCAGTTTAAATGAAGCAAGACAAGAACT AAGTGACAAAGTAAGAGAACTTTCCAGATCTGCTGGCAAAACATCCCTTGTGGAGGAGGCAGAAAAGCACGCGCGGTCCTTACAAGAGCT GGCAAAGCAGCTGGAAGAGATCAAGAGAAACGCCAGCGGGGATGAGCTGGTGCGCTGTGCTGTGGATGCCGCCACCGCCTACGAGAACAT CCTCAATGCCATCAAAGCGGCCGAGGACGCAGCCAACAGGGCTGCCAGTGCATCTGAATCTGCCCTCCAGACAGTGATAAAGGAAGATCT GCCAAGAAAAGCTAAAACCCTGAGTTCCAACAGTGATAAACTGTTAAATGAAGCCAAGATGACACAAAAGAAGCTAAAGCAAGAAGTCAG TCCAGCTCTCAACAACCTACAGCAAACCCTGAATATTGTGACAGTTCAGAAAGAAGTGATAGACACCAATCTCACAACTCTCCGAGATGG TCTTCATGGGATACAGAGAGGTGATATTGATGCTATGATCAGTAGTGCAAAGAGCATGGTCAGAAAGGCCAACGACATCACAGATGAGGT TCTGGATGGGCTCAACCCCATCCAGACAGATGTGGAAAGAATTAAGGACACCTATGGGAGGACACAGAACGAAGACTTCAAAAAGGCTCT GACTGATGCAGATAACTCGGTGAATAAGTTAACCAACAAACTACCTGATCTTTGGCGCAAGATTGAAAGTATCAACCAACAGCTGTTGCC CTTGGGAAACATCTCTGACAACATGGACAGAATACGAGAACTAATTCAGCAGGCCAGAGATGCTGCCAGTAAGGTTGCTGTCCCCATGAG GTTCAATGGTAAATCTGGAGTCGAAGTCCGACTGCCAAATGACCTGGAAGATTTGAAAGGATATACATCTCTGTCCTTGTTTCTCCAAAG GCCCAACTCAAGAGAAAATGGGGGTACTGAGAATATGTTTGTGATGTACCTTGGAAATAAAGATGCCTCCCGGGACTACATCGGCATGGC AGTTGTGGATGGCCAGCTCACCTGTGTCTACAACCTGGGGGACCGTGAGGCTGAACTCCAAGTGGACCAGATCTTGACCAAGAGTGAGAC TAAGGAGGCAGTTATGGATCGGGTGAAATTTCAGAGAATTTATCAGTTTGCAAGGCTTAATTACACCAAAGGAGCCACATCCAGTAAACC AGAAACACCCGGAGTCTATGACATGGATGGTAGAAATAGCAATACACTCCTTAATTTGGATCCTGAAAATGTTGTATTTTATGTTGGAGG TTACCCACCTGATTTTAAACTTCCCAGTCGACTAAGTTTCCCTCCATACAAAGGTTGTATTGAATTAGATGACCTCAATGAAAATGTTCT GAGCTTGTACAACTTCAAAAAAACATTCAATCTCAACACAACTGAAGTGGAGCCTTGTAGAAGGAGGAAGGAAGAGTCAGACAAAAATTA TTTTGAAGGTACGGGCTATGCTCGAGTTCCAACTCAACCACATGCTCCCATCCCAACCTTTGGACAGACAATTCAGACCACCGTGGATAG AGGCTTGCTGTTCTTTGCAGAAAACGGGGATCGCTTCATATCTCTAAATATAGAAGATGGCAAGCTCATGGTGAGATACAAACTGAATTC AGAGCTACCAAAAGAGAGAGGAGTTGGAGACGCCATAAACAACGGCAGAGACCATTCGATTCAGATCAAAATTGGAAAACTCCAAAAGCG TATGTGGATAAATGTGGACGTTCAAAACACTATAATTGATGGTGAAGTATTTGATTTCAGCACATATTATCTGGGAGGAATTCCAATTGC AATCAGGGAAAGATTTAACATTTCTACGCCTGCTTTCCGAGGCTGCATGAAAAATTTGAAGAAAACCAGTGGTGTCGTTAGATTGAATGA TACTGTGGGAGTAACCAAAAAGTGCTCGGAAGACTGGAAGCTTGTGCGATCTGCCTCATTCTCCAGAGGAGGACAATTGAGTTTCACTGA TTTGGGCTTACCACCTACTGACCACCTCCAGGCCTCATTTGGATTTCAGACCTTTCAACCCAGTGGCATATTATTAGATCATCAGACATG GACAAGGAACCTGCAGGTCACTCTGGAAGATGGTTACATTGAATTGAGCACCAGCGATAGCGGCAGCCCAATTTTTAAATCTCCACAGAC GTATATGGATGGTTTACTGCATTATGTATCTGTAATAAGCGACAACTCTGGACTACGGCTTCTCATCGATGACCAGCTTCTGAGAAATAG CAAAAGGCTAAAACACATTTCAAGTTCCCGGCAGTCTCTGCGTCTGGGCGGGAGCAATTTTGAGGGTTGTATTAGCAATGTTTTTGTCCA GAGGTTATCACTGAGTCCTGAAGTCCTAGATTTGACCAGTAACTCTCTCAAGAGAGATGTGTCCCTGGGAGGCTGCAGTTTAAACAAACC ACCTTTTCTAATGTTGCTTAAAGGTTCTACCAGGTTTAACAAGACCAAGACTTTTCGTATCAACCAGCTGTTGCAGGACACACCAGTGGC CTCCCCAAGGAGCGTGAAGGTGTGGCAAGATGCTTGCTCACCACTTCCCAAGACCCAGGCCAATCATGGAGCCCTCCAGTTTGGGGACAT TCCCACCAGCCACTTGCTATTCAAGCTTCCTCAGGAGCTGCTGAAACCCAGGTCACAGTTTGCTGTGGACATGCAGACAACATCCTCCAG AGGACTGGTGTTTCACACGGGCACTAAGAACTCCTTTATGGCTCTTTATCTTTCAAAAGGACGTCTGGTCTTTGCACTGGGGACAGATGG GAAAAAATTGAGGATCAAAAGCAAGGAGAAATGCAATGATGGGAAATGGCACACGGTGGTGTTTGGCCATGATGGGGAAAAGGGGCGCTT GGTTGTGGATGGACTGAGGGCCCGGGAGGGAAGTTTGCCTGGAAACTCCACCATCAGCATCAGAGCGCCAGTTTACCTGGGATCACCTCC ATCAGGGAAACCAAAGAGCCTCCCCACAAACAGCTTTGTGGGATGCCTGAAGAACTTTCAGCTGGATTCAAAACCCTTGTATACCCCTTC TTCAAGCTTCGGGGTGTCTTCCTGCTTGGGTGGTCCTTTGGAGAAAGGCATTTATTTCTCTGAAGAAGGAGGTCATGTCGTCTTGGCTCA CTCTGTATTGTTGGGGCCAGAATTTAAGCTTGTTTTCAGCATCCGCCCAAGAAGTCTCACTGGGATCCTAATACACATCGGAAGTCAGCC CGGGAAGCACTTATGTGTTTACCTGGAGGCAGGAAAGGTCACGGCCTCTATGGACAGTGGGGCAGGTGGGACCTCAACGTCGGTCACACC AAAGCAGTCTCTGTGTGATGGACAGTGGCACTCGGTGGCAGTCACCATAAAACAACACATCCTGCACCTGGAACTGGACACAGACAGTAG CTACACAGCTGGACAGATCCCCTTCCCACCTGCCAGCACTCAAGAGCCACTACACCTTGGAGGTGCTCCAGCCAATTTGACGACACTGAG GATCCCTGTGTGGAAATCATTCTTTGGCTGTCTGAGGAATATTCATGTCAATCACATCCCTGTCCCTGTCACTGAAGCCTTGGAAGTCCA GGGGCCTGTCAGTCTGAATGGTTGTCCTGACCAGTAACCCAAGCCTATTTCACAGCAAGGAAATTCACCTTCAAAAGCACTGATTACCCA ATGCACCTCCCTCCCCAGCTCGAGATCATTCTTCACTCAGGACACAAACCAGACAGGTTTAATAGCGAATCTAATTTTGAATTCTGACCA TGGATACCCATCACTTTGGCATTCAGTGCTACATGTGTATTTTATATAAAAATCCCATTTCTTGAAGATAAAAAAATTGTTATTCAAATT GTTATGCACAGAATGTTTTTGGTAATATTAATTTCCACTAAAAAATTAAATGTCTTTTAAGAAACATTCTTTTCCACTTGTTAAAAAAAT TAAATATATTTTAAAGCACTTTAAGAATATGAAACTTTCATATATGTTAAAGGATTATAATTTATGGAATTAAAAAATGCAGTGTAGTCC >In-frame_ENST00000269141_ENST00000313654_TCGA-44-7669-01A_CDH2_chr18_25727637_-_LAMA3_chr18_21393021_length(amino acids)=2943AA_start in transcript=25_stop in transcript=8856 MHPSRLPLRSGPEPSRLRCHSSRLHTLADAHTLSLPVPPPPPQLLDLWVCFITPGASPADSAARYLSSARSPLAGSGEQRRRGWGGEGKG RGWKLPGAVSPRRCWCCRCLLLLRRRRRRRRLLRLFARPLSASMCRIAGALRTLLPLLAALLQASVEASGEIALCKTGFPEDVYSAVLSK DVHEGQPLLNGSSSACDPAGTINSNLGYCQCKLHVEGPTCSRCKLLYWNLDKENPSGCSECKCHKAGTVSGTGECRQGDGDCHCKSHVGG DSCDTCEDGYFALEKSNYFGCQGCQCDIGGALSSMCSGPSGVCQCREHVVGKVCQRPENNYYFPDLHHMKYEIEDGSTPNGRDLRFGFDP LAFPEFSWRGYAQMTSVQNDVRITLNVGKSSGSLFRVILRYVNPGTEAVSGHITIYPSWGAAQSKEIIFLPSKEPAFVTVPGNGFADPFS ITPGIWVACIKAEGVLLDYLVLLPRDYYEASVLQLPVTEPCAYAGPPQENCLLYQHLPVTRFPCTLACEARHFLLDGEPRPVAVRQPTPA HPVMVDLSGREVELHLRLRIPQVGHYVVVVEYSTEAAQLFVVDVNVKSSGSVLAGQVNIYSCNYSVLCRSAVIDHMSRIAMYELLADADI QLKGHMARFLLHQVCIIPIEEFSAEYVRPQVHCIASYGRFVNQSATCVSLAHETPPTALILDVLSGRPFPHLPQQSSPSVDVLPGVTLKA PQNQVTLRGRVPHLGRYVFVIHFYQAAHPTFPAQVSVDGGWPRAGSFHASFCPHVLGCRDQVIAEGQIEFDISEPEVAATVKVPEGKSLV LVRVLVVPAENYDYQILHKKSMDKSLEFITNCGKNSFYLDPQTASRFCKNSARSLVAFYHKGALPCECHPTGATGPHCSPEGGQCPCQPN VIGRQCTRCATGHYGFPRCKPCSCGRRLCEEMTGQCRCPPRTVRPQCEVCETHSFSFHPMAGCEGCNCSRRGTIEAAMPECDRDSGQCRC KPRITGRQCDRCASGFYRFPECVPCNCNRDGTEPGVCDPGTGACLCKENVEGTECNVCREGSFHLDPANLKGCTSCFCFGVNNQCHSSHK RRTKFVDMLGWHLETADRVDIPVSFNPGSNSMVADLQELPATIHSASWVAPTSYLGDKVSSYGGYLTYQAKSFGLPGDMVLLEKKPDVQL TGQHMSIIYEETNTPRPDRLHHGRVHVVEGNFRHASSRAPVSREELMTVLSRLADVRIQGLYFTETQRLTLSEVGLEEASDTGSGRIALA VEICACPPAYAGDSCQGCSPGYYRDHKGLYTGRCVPCNCNGHSNQCQDGSGICVNCQHNTAGEHCERCQEGYYGNAVHGSCRACPCPHTN SFATGCVVNGGDVRCSCKAGYTGTQCERCAPGYFGNPQKFGGSCQPCSCNSNGQLGSCHPLTGDCINQEPKDSSPAEECDDCDSCVMTLL NDLATMGEQLRLVKSQLQGLSASAGLLEQMRHMETQAKDLRNQLLNYRSAISNHGSKIEGLERELTDLNQEFETLQEKAQVNSRKAQTLN NNVNRATQSAKELDVKIKNVIRNVHILLKQISGTDGEGNNVPSGDFSREWAEAQRMMRELRNRNFGKHLREAEADKRESQLLLNRIRTWQ KTHQGENNGLANSIRDSLNEYEAKLSDLRARLQEAAAQAKQANGLNQENERALGAIQRQVKEINSLQSDFTKYLTTADSSLLQTNIALQL MEKSQKEYEKLAASLNEARQELSDKVRELSRSAGKTSLVEEAEKHARSLQELAKQLEEIKRNASGDELVRCAVDAATAYENILNAIKAAE DAANRAASASESALQTVIKEDLPRKAKTLSSNSDKLLNEAKMTQKKLKQEVSPALNNLQQTLNIVTVQKEVIDTNLTTLRDGLHGIQRGD IDAMISSAKSMVRKANDITDEVLDGLNPIQTDVERIKDTYGRTQNEDFKKALTDADNSVNKLTNKLPDLWRKIESINQQLLPLGNISDNM DRIRELIQQARDAASKVAVPMRFNGKSGVEVRLPNDLEDLKGYTSLSLFLQRPNSRENGGTENMFVMYLGNKDASRDYIGMAVVDGQLTC VYNLGDREAELQVDQILTKSETKEAVMDRVKFQRIYQFARLNYTKGATSSKPETPGVYDMDGRNSNTLLNLDPENVVFYVGGYPPDFKLP SRLSFPPYKGCIELDDLNENVLSLYNFKKTFNLNTTEVEPCRRRKEESDKNYFEGTGYARVPTQPHAPIPTFGQTIQTTVDRGLLFFAEN GDRFISLNIEDGKLMVRYKLNSELPKERGVGDAINNGRDHSIQIKIGKLQKRMWINVDVQNTIIDGEVFDFSTYYLGGIPIAIRERFNIS TPAFRGCMKNLKKTSGVVRLNDTVGVTKKCSEDWKLVRSASFSRGGQLSFTDLGLPPTDHLQASFGFQTFQPSGILLDHQTWTRNLQVTL EDGYIELSTSDSGSPIFKSPQTYMDGLLHYVSVISDNSGLRLLIDDQLLRNSKRLKHISSSRQSLRLGGSNFEGCISNVFVQRLSLSPEV LDLTSNSLKRDVSLGGCSLNKPPFLMLLKGSTRFNKTKTFRINQLLQDTPVASPRSVKVWQDACSPLPKTQANHGALQFGDIPTSHLLFK LPQELLKPRSQFAVDMQTTSSRGLVFHTGTKNSFMALYLSKGRLVFALGTDGKKLRIKSKEKCNDGKWHTVVFGHDGEKGRLVVDGLRAR EGSLPGNSTISIRAPVYLGSPPSGKPKSLPTNSFVGCLKNFQLDSKPLYTPSSSFGVSSCLGGPLEKGIYFSEEGGHVVLAHSVLLGPEF KLVFSIRPRSLTGILIHIGSQPGKHLCVYLEAGKVTASMDSGAGGTSTSVTPKQSLCDGQWHSVAVTIKQHILHLELDTDSSYTAGQIPF -------------------------------------------------------------- >In-frame_ENST00000269141_ENST00000399516_TCGA-44-7669-01A_CDH2_chr18_25727637_-_LAMA3_chr18_21393021_length(transcript)=8689nt_BP=596nt CCTCCACCGGCCAAGGTCCCCGCCGCTGCATCCCTCGCGGCTTCCGCTGCGCTCCGGGCCGGAGCCGAGCCGCCTGCGCTGCCACAGCAG CCGCCTCCACACACTCGCAGACGCTCACACGCTCTCCCTCCCTGTTCCCCCGCCCCCTCCCCAGCTCCTTGATCTCTGGGTCTGTTTTAT TACTCCTGGTGCGAGTCCCGCGGACTCCGCGGCCCGCTATTTGTCATCAGCTCGCTCTCCATTGGCGGGGAGCGGAGAGCAGCGAAGAAG GGGGTGGGGAGGGGAGGGGAAGGGAAGGGGGTGGAAACTGCCTGGAGCCGTTTCTCCGCGCCGCTGTTGGTGCTGCCGCTGCCTCCTCCT CCTCCGCCGCCGCCGCCGCCGCCGCCGCCTCCTCCGGCTCTTCGCTCGGCCCCTCTCCGCCTCCATGTGCCGGATAGCGGGAGCGCTGCG GACCCTGCTGCCGCTGCTGGCGGCCCTGCTTCAGGCGTCTGTAGAGGCTTCTGGTGAAATCGCATTATGCAAGACTGGATTTCCTGAAGA TGTTTACAGTGCAGTCTTATCGAAGGATGTGCATGAAGGACAGCCTCTTCTCAATGGTTCCAGCAGTGCTTGTGACCCAGCTGGTACCAT CAACTCCAATTTGGGGTATTGCCAATGCAAGCTTCATGTTGAAGGTCCTACTTGTAGCCGCTGCAAACTGTTATATTGGAATCTGGACAA AGAAAACCCCAGTGGATGTTCAGAATGCAAGTGCCATAAGGCGGGAACAGTGAGTGGAACTGGAGAGTGTAGGCAGGGAGATGGTGACTG TCACTGCAAGTCCCATGTGGGTGGCGATTCCTGCGACACCTGTGAAGATGGATATTTTGCTTTGGAAAAGAGCAATTACTTTGGGTGTCA AGGGTGTCAGTGTGACATTGGTGGGGCATTGTCCTCCATGTGCAGTGGGCCCTCGGGAGTGTGCCAGTGCCGAGAGCATGTCGTGGGAAA GGTGTGCCAGCGGCCTGAAAACAACTACTATTTCCCAGATTTGCATCATATGAAGTATGAGATTGAAGACGGCAGCACACCTAATGGGAG AGACCTTCGATTTGGATTTGATCCGCTGGCATTTCCTGAGTTTAGCTGGAGAGGATATGCCCAAATGACCTCAGTACAGAATGATGTAAG AATAACATTGAATGTAGGGAAGTCAAGTGGCTCCTTGTTTCGTGTTATTCTGAGATACGTTAACCCTGGAACTGAAGCAGTATCTGGCCA TATAACTATTTATCCATCCTGGGGTGCTGCTCAAAGCAAAGAGATCATCTTCCTGCCGAGTAAGGAGCCAGCCTTTGTCACTGTCCCTGG AAATGGTTTTGCAGACCCATTTTCAATCACACCAGGAATATGGGTTGCTTGTATTAAGGCAGAAGGAGTCCTTCTGGATTACCTGGTGCT GCTCCCCAGGGACTACTATGAAGCCTCTGTACTGCAGCTGCCAGTCACAGAACCATGTGCCTACGCAGGACCTCCCCAAGAAAATTGCTT ACTCTACCAGCATTTGCCAGTGACCAGATTCCCCTGTACCCTGGCTTGTGAGGCCAGACACTTCCTGCTTGATGGGGAGCCAAGACCCGT GGCAGTGAGGCAGCCCACACCTGCACACCCTGTCATGGTGGACCTCAGCGGGAGAGAGGTGGAATTGCATCTGCGGCTGCGCATCCCACA GGTTGGCCACTACGTGGTTGTGGTCGAGTATTCCACGGAGGCAGCTCAGCTGTTTGTGGTTGATGTGAATGTGAAGAGCTCCGGGTCTGT TCTGGCAGGCCAGGTGAACATTTACAGCTGCAACTACAGTGTTCTCTGCCGGAGTGCTGTGATTGATCACATGAGCCGCATCGCCATGTA TGAGCTATTGGCAGATGCAGACATTCAGCTCAAGGGACACATGGCCCGATTCCTTCTGCATCAAGTTTGTATCATACCTATTGAAGAATT CTCAGCTGAGTATGTGAGACCACAAGTCCACTGCATTGCCAGTTATGGGCGATTTGTCAATCAAAGTGCCACCTGTGTCTCCTTGGCCCA TGAAACTCCTCCAACAGCATTAATTTTGGATGTTCTAAGTGGCAGGCCTTTCCCTCACCTGCCCCAGCAGTCGTCACCTTCTGTTGATGT TCTTCCTGGGGTCACCTTGAAGGCACCGCAGAATCAAGTGACCCTGAGAGGACGTGTACCACACCTGGGCCGATACGTCTTTGTCATCCA TTTTTACCAAGCAGCGCACCCGACGTTTCCCGCGCAGGTGTCGGTGGATGGCGGGTGGCCACGGGCAGGCTCCTTCCATGCCTCTTTTTG CCCCCATGTGCTTGGCTGCCGGGATCAAGTGATTGCCGAAGGCCAGATTGAGTTTGACATCTCAGAGCCTGAAGTGGCCGCAACTGTGAA GGTTCCAGAAGGAAAGTCCTTGGTTTTGGTCCGTGTTCTAGTGGTGCCTGCAGAAAACTATGACTACCAAATACTTCACAAAAAATCCAT GGACAAGTCACTCGAGTTTATCACCAATTGTGGAAAAAACAGCTTTTACCTTGACCCCCAGACAGCCTCCAGATTCTGTAAGAATTCCGC CAGGTCCCTGGTGGCCTTTTACCACAAGGGCGCCCTGCCTTGTGAGTGCCACCCCACTGGGGCCACCGGCCCTCACTGCAGCCCTGAGGG TGGGCAGTGCCCATGCCAGCCCAACGTCATCGGGCGGCAGTGCACCCGCTGTGCAACAGGCCACTACGGATTCCCACGCTGCAAGCCGTG CAGCTGTGGTCGGCGCCTTTGTGAAGAGATGACGGGGCAGTGCCGCTGCCCTCCCCGCACGGTCAGGCCCCAGTGTGAGGTGTGTGAGAC ACACTCATTCAGCTTCCACCCCATGGCCGGCTGCGAAGGCTGCAACTGTTCCAGGAGGGGCACCATCGAGGCTGCCATGCCGGAGTGTGA CCGGGACAGCGGGCAGTGCAGATGCAAGCCCAGAATCACAGGGCGGCAGTGTGACCGATGTGCTTCCGGGTTTTACCGCTTTCCTGAGTG TGTTCCCTGCAATTGCAACAGAGATGGGACTGAGCCAGGAGTGTGTGACCCAGGGACCGGGGCTTGCCTCTGCAAGGAAAATGTAGAAGG CACAGAGTGTAATGTGTGTCGAGAAGGCTCATTCCATTTGGACCCAGCCAATCTCAAGGGTTGTACCAGCTGTTTCTGTTTTGGAGTAAA TAATCAATGTCACAGCTCACATAAGCGAAGGACTAAGTTTGTGGATATGCTGGGCTGGCACCTGGAGACAGCAGACAGAGTGGACATCCC TGTCTCTTTCAACCCAGGCAGCAACAGTATGGTGGCGGATCTCCAGGAGCTGCCCGCAACCATCCACAGCGCGTCCTGGGTCGCACCCAC CTCCTACCTGGGGGACAAGGTTTCTTCATATGGTGGTTACCTCACTTACCAAGCCAAGTCCTTTGGCTTGCCTGGCGACATGGTTCTTCT GGAAAAGAAGCCGGATGTACAGCTCACTGGTCAGCACATGTCCATCATCTATGAGGAGACAAACACCCCACGGCCAGACCGGCTGCATCA TGGACGAGTGCACGTGGTCGAGGGAAACTTCAGACATGCCAGCAGCCGTGCCCCAGTGTCTAGGGAGGAGCTGATGACAGTGCTGTCTAG ACTGGCAGATGTGCGCATCCAAGGCCTCTACTTCACAGAGACTCAAAGGCTCACCCTGAGCGAGGTGGGGCTAGAGGAAGCCTCTGACAC AGGAAGTGGGCGCATAGCACTTGCTGTGGAAATCTGTGCCTGCCCCCCTGCCTACGCTGGTGACTCTTGTCAGGGTTGTAGCCCTGGATA CTATCGGGATCATAAAGGCTTGTATACCGGACGGTGTGTTCCCTGCAATTGCAACGGACATTCAAATCAATGCCAGGATGGCTCAGGCAT ATGTGTTAACTGTCAGCACAACACCGCGGGAGAGCACTGTGAACGCTGCCAGGAGGGCTACTATGGCAACGCCGTCCACGGATCCTGCAG GGCCTGCCCATGTCCTCACACTAACAGCTTTGCCACTGGCTGTGTGGTGAATGGGGGAGACGTGCGGTGCTCCTGCAAAGCTGGGTACAC AGGAACACAGTGTGAAAGGTGTGCACCGGGATATTTCGGGAATCCCCAGAAATTCGGAGGTAGCTGCCAACCATGCAGTTGTAACAGCAA TGGCCAGCTGGGCAGCTGTCATCCCCTGACTGGAGACTGCATAAACCAAGAACCCAAAGATAGCAGCCCTGCAGAAGAATGTGATGATTG CGACAGCTGTGTGATGACCCTCCTGAACGACCTGGCCACCATGGGCGAGCAGCTCCGCCTGGTCAAGTCTCAGCTGCAGGGCCTGAGTGC CAGCGCAGGGCTTCTGGAGCAGATGAGGCACATGGAGACCCAGGCCAAGGACCTGAGGAATCAGTTGCTCAACTACCGTTCTGCCATTTC AAATCATGGATCAAAAATAGAAGGCCTGGAAAGAGAACTGACTGATTTGAATCAAGAATTTGAGACTTTGCAAGAAAAGGCTCAAGTAAA TTCCAGAAAAGCACAAACATTAAACAACAATGTTAATCGGGCAACACAAAGCGCAAAAGAACTGGATGTGAAGATTAAAAATGTCATCCG GAATGTGCACATGCTGAACCGGATAAGGACCTGGCAGAAAACCCACCAGGGGGAGAACAATGGGCTTGCTAACAGTATCCGGGATTCTTT AAATGAATACGAAGCCAAACTCAGTGACCTTCGTGCTCGGCTGCAGGAGGCAGCTGCCCAAGCCAAGCAGGCAAATGGCTTGAACCAAGA AAACGAGAGAGCTTTGGGAGCCATTCAGAGACAAGTGAAAGAAATAAATTCCCTGCAGAGTGATTTCACCAAGTATCTAACCACTGCAGA CTCATCTTTGTTGCAAACCAACATTGCGCTGCAGCTGATGGAGAAAAGCCAGAAGGAATATGAAAAATTAGCTGCCAGTTTAAATGAAGC AAGACAAGAACTAAGTGACAAAGTAAGAGAACTTTCCAGATCTGCTGGCAAAACATCCCTTGTGGAGGAGGCAGAAAAGCACGCGCGGTC CTTACAAGAGCTGGCAAAGCAGCTGGAAGAGATCAAGAGAAACGCCAGCGGGGATGAGCTGGTGCGCTGTGCTGTGGATGCCGCCACCGC CTACGAGAACATCCTCAATGCCATCAAAGCGGCCGAGGACGCAGCCAACAGGGCTGCCAGTGCATCTGAATCTGCCCTCCAGACAGTGAT AAAGGAAGATCTGCCAAGAAAAGCTAAAACCCTGAGTTCCAACAGTGATAAACTGTTAAATGAAGCCAAGATGACACAAAAGAAGCTAAA GCAAGAAGTCAGTCCAGCTCTCAACAACCTACAGCAAACCCTGAATATTGTGACAGTTCAGAAAGAAGTGATAGACACCAATCTCACAAC TCTCCGAGATGGTCTTCATGGGATACAGAGAGGTGATATTGATGCTATGATCAGTAGTGCAAAGAGCATGGTCAGAAAGGCCAACGACAT CACAGATGAGGTTCTGGATGGGCTCAACCCCATCCAGACAGATGTGGAAAGAATTAAGGACACCTATGGGAGGACACAGAACGAAGACTT CAAAAAGGCTCTGACTGATGCAGATAACTCGGTGAATAAGTTAACCAACAAACTACCTGATCTTTGGCGCAAGATTGAAAGTATCAACCA ACAGCTGTTGCCCTTGGGAAACATCTCTGACAACATGGACAGAATACGAGAACTAATTCAGCAGGCCAGAGATGCTGCCAGTAAGGTTGC TGTCCCCATGAGGTTCAATGGTAAATCTGGAGTCGAAGTCCGACTGCCAAATGACCTGGAAGATTTGAAAGGATATACATCTCTGTCCTT GTTTCTCCAAAGGCCCAACTCAAGAGAAAATGGGGGTACTGAGAATATGTTTGTGATGTACCTTGGAAATAAAGATGCCTCCCGGGACTA CATCGGCATGGCAGTTGTGGATGGCCAGCTCACCTGTGTCTACAACCTGGGGGACCGTGAGGCTGAACTCCAAGTGGACCAGATCTTGAC CAAGAGTGAGACTAAGGAGGCAGTTATGGATCGGGTGAAATTTCAGAGAATTTATCAGTTTGCAAGGCTTAATTACACCAAAGGAGCCAC ATCCAGTAAACCAGAAACACCCGGAGTCTATGACATGGATGGTAGAAATAGCAATACACTCCTTAATTTGGATCCTGAAAATGTTGTATT TTATGTTGGAGGTTACCCACCTGATTTTAAACTTCCCAGTCGACTAAGTTTCCCTCCATACAAAGGTTGTATTGAATTAGATGACCTCAA TGAAAATGTTCTGAGCTTGTACAACTTCAAAAAAACATTCAATCTCAACACAACTGAAGTGGAGCCTTGTAGAAGGAGGAAGGAAGAGTC AGACAAAAATTATTTTGAAGGTACGGGCTATGCTCGAGTTCCAACTCAACCACATGCTCCCATCCCAACCTTTGGACAGACAATTCAGAC CACCGTGGATAGAGGCTTGCTGTTCTTTGCAGAAAACGGGGATCGCTTCATATCTCTAAATATAGAAGATGGCAAGCTCATGGTGAGATA CAAACTGAATTCAGAGCTACCAAAAGAGAGAGGAGTTGGAGACGCCATAAACAACGGCAGAGACCATTCGATTCAGATCAAAATTGGAAA ACTCCAAAAGCGTATGTGGATAAATGTGGACGTTCAAAACACTATAATTGATGGTGAAGTATTTGATTTCAGCACATATTATCTGGGAGG AATTCCAATTGCAATCAGGGAAAGATTTAACATTTCTACGCCTGCTTTCCGAGGCTGCATGAAAAATTTGAAGAAAACCAGTGGTGTCGT TAGATTGAATGATACTGTGGGAGTAACCAAAAAGTGCTCGGAAGACTGGAAGCTTGTGCGATCTGCCTCATTCTCCAGAGGAGGACAATT GAGTTTCACTGATTTGGGCTTACCACCTACTGACCACCTCCAGGCCTCATTTGGATTTCAGACCTTTCAACCCAGTGGCATATTATTAGA TCATCAGACATGGACAAGGAACCTGCAGGTCACTCTGGAAGATGGTTACATTGAATTGAGCACCAGCGATAGCGGCAGCCCAATTTTTAA ATCTCCACAGACGTATATGGATGGTTTACTGCATTATGTATCTGTAATAAGCGACAACTCTGGACTACGGCTTCTCATCGATGACCAGCT TCTGAGAAATAGCAAAAGGCTAAAACACATTTCAAGTTCCCGGCAGTCTCTGCGTCTGGGCGGGAGCAATTTTGAGGGTTGTATTAGCAA TGTTTTTGTCCAGAGGTTATCACTGAGTCCTGAAGTCCTAGATTTGACCAGTAACTCTCTCAAGAGAGATGTGTCCCTGGGAGGCTGCAG TTTAAACAAACCACCTTTTCTAATGTTGCTTAAAGGTTCTACCAGGTTTAACAAGACCAAGACTTTTCGTATCAACCAGCTGTTGCAGGA CACACCAGTGGCCTCCCCAAGGAGCGTGAAGGTGTGGCAAGATGCTTGCTCACCACTTCCCAAGACCCAGGCCAATCATGGAGCCCTCCA GTTTGGGGACATTCCCACCAGCCACTTGCTATTCAAGCTTCCTCAGGAGCTGCTGAAACCCAGGTCACAGTTTGCTGTGGACATGCAGAC AACATCCTCCAGAGGACTGGTGTTTCACACGGGCACTAAGAACTCCTTTATGGCTCTTTATCTTTCAAAAGGACGTCTGGTCTTTGCACT GGGGACAGATGGGAAAAAATTGAGGATCAAAAGCAAGGAGAAATGCAATGATGGGAAATGGCACACGGTGGTGTTTGGCCATGATGGGGA AAAGGGGCGCTTGGTTGTGGATGGACTGAGGGCCCGGGAGGGAAGTTTGCCTGGAAACTCCACCATCAGCATCAGAGCGCCAGTTTACCT GGGATCACCTCCATCAGGGAAACCAAAGAGCCTCCCCACAAACAGCTTTGTGGGATGCCTGAAGAACTTTCAGCTGGATTCAAAACCCTT GTATACCCCTTCTTCAAGCTTCGGGGTGTCTTCCTGCTTGGGTGGTCCTTTGGAGAAAGGCATTTATTTCTCTGAAGAAGGAGGTCATGT CGTCTTGGCTCACTCTGTATTGTTGGGGCCAGAATTTAAGCTTGTTTTCAGCATCCGCCCAAGAAGTCTCACTGGGATCCTAATACACAT CGGAAGTCAGCCCGGGAAGCACTTATGTGTTTACCTGGAGGCAGGAAAGGTCACGGCCTCTATGGACAGTGGGGCAGGTGGGACCTCAAC GTCGGTCACACCAAAGCAGTCTCTGTGTGATGGACAGTGGCACTCGGTGGCAGTCACCATAAAACAACACATCCTGCACCTGGAACTGGA CACAGACAGTAGCTACACAGCTGGACAGATCCCCTTCCCACCTGCCAGCACTCAAGAGCCACTACACCTTGGAGGTGCTCCAGCCAATTT GACGACACTGAGGATCCCTGTGTGGAAATCATTCTTTGGCTGTCTGAGGAATATTCATGTCAATCACATCCCTGTCCCTGTCACTGAAGC >In-frame_ENST00000269141_ENST00000399516_TCGA-44-7669-01A_CDH2_chr18_25727637_-_LAMA3_chr18_21393021_length(amino acids)=2888AA_start in transcript=25_stop in transcript=8688 MHPSRLPLRSGPEPSRLRCHSSRLHTLADAHTLSLPVPPPPPQLLDLWVCFITPGASPADSAARYLSSARSPLAGSGEQRRRGWGGEGKG RGWKLPGAVSPRRCWCCRCLLLLRRRRRRRRLLRLFARPLSASMCRIAGALRTLLPLLAALLQASVEASGEIALCKTGFPEDVYSAVLSK DVHEGQPLLNGSSSACDPAGTINSNLGYCQCKLHVEGPTCSRCKLLYWNLDKENPSGCSECKCHKAGTVSGTGECRQGDGDCHCKSHVGG DSCDTCEDGYFALEKSNYFGCQGCQCDIGGALSSMCSGPSGVCQCREHVVGKVCQRPENNYYFPDLHHMKYEIEDGSTPNGRDLRFGFDP LAFPEFSWRGYAQMTSVQNDVRITLNVGKSSGSLFRVILRYVNPGTEAVSGHITIYPSWGAAQSKEIIFLPSKEPAFVTVPGNGFADPFS ITPGIWVACIKAEGVLLDYLVLLPRDYYEASVLQLPVTEPCAYAGPPQENCLLYQHLPVTRFPCTLACEARHFLLDGEPRPVAVRQPTPA HPVMVDLSGREVELHLRLRIPQVGHYVVVVEYSTEAAQLFVVDVNVKSSGSVLAGQVNIYSCNYSVLCRSAVIDHMSRIAMYELLADADI QLKGHMARFLLHQVCIIPIEEFSAEYVRPQVHCIASYGRFVNQSATCVSLAHETPPTALILDVLSGRPFPHLPQQSSPSVDVLPGVTLKA PQNQVTLRGRVPHLGRYVFVIHFYQAAHPTFPAQVSVDGGWPRAGSFHASFCPHVLGCRDQVIAEGQIEFDISEPEVAATVKVPEGKSLV LVRVLVVPAENYDYQILHKKSMDKSLEFITNCGKNSFYLDPQTASRFCKNSARSLVAFYHKGALPCECHPTGATGPHCSPEGGQCPCQPN VIGRQCTRCATGHYGFPRCKPCSCGRRLCEEMTGQCRCPPRTVRPQCEVCETHSFSFHPMAGCEGCNCSRRGTIEAAMPECDRDSGQCRC KPRITGRQCDRCASGFYRFPECVPCNCNRDGTEPGVCDPGTGACLCKENVEGTECNVCREGSFHLDPANLKGCTSCFCFGVNNQCHSSHK RRTKFVDMLGWHLETADRVDIPVSFNPGSNSMVADLQELPATIHSASWVAPTSYLGDKVSSYGGYLTYQAKSFGLPGDMVLLEKKPDVQL TGQHMSIIYEETNTPRPDRLHHGRVHVVEGNFRHASSRAPVSREELMTVLSRLADVRIQGLYFTETQRLTLSEVGLEEASDTGSGRIALA VEICACPPAYAGDSCQGCSPGYYRDHKGLYTGRCVPCNCNGHSNQCQDGSGICVNCQHNTAGEHCERCQEGYYGNAVHGSCRACPCPHTN SFATGCVVNGGDVRCSCKAGYTGTQCERCAPGYFGNPQKFGGSCQPCSCNSNGQLGSCHPLTGDCINQEPKDSSPAEECDDCDSCVMTLL NDLATMGEQLRLVKSQLQGLSASAGLLEQMRHMETQAKDLRNQLLNYRSAISNHGSKIEGLERELTDLNQEFETLQEKAQVNSRKAQTLN NNVNRATQSAKELDVKIKNVIRNVHMLNRIRTWQKTHQGENNGLANSIRDSLNEYEAKLSDLRARLQEAAAQAKQANGLNQENERALGAI QRQVKEINSLQSDFTKYLTTADSSLLQTNIALQLMEKSQKEYEKLAASLNEARQELSDKVRELSRSAGKTSLVEEAEKHARSLQELAKQL EEIKRNASGDELVRCAVDAATAYENILNAIKAAEDAANRAASASESALQTVIKEDLPRKAKTLSSNSDKLLNEAKMTQKKLKQEVSPALN NLQQTLNIVTVQKEVIDTNLTTLRDGLHGIQRGDIDAMISSAKSMVRKANDITDEVLDGLNPIQTDVERIKDTYGRTQNEDFKKALTDAD NSVNKLTNKLPDLWRKIESINQQLLPLGNISDNMDRIRELIQQARDAASKVAVPMRFNGKSGVEVRLPNDLEDLKGYTSLSLFLQRPNSR ENGGTENMFVMYLGNKDASRDYIGMAVVDGQLTCVYNLGDREAELQVDQILTKSETKEAVMDRVKFQRIYQFARLNYTKGATSSKPETPG VYDMDGRNSNTLLNLDPENVVFYVGGYPPDFKLPSRLSFPPYKGCIELDDLNENVLSLYNFKKTFNLNTTEVEPCRRRKEESDKNYFEGT GYARVPTQPHAPIPTFGQTIQTTVDRGLLFFAENGDRFISLNIEDGKLMVRYKLNSELPKERGVGDAINNGRDHSIQIKIGKLQKRMWIN VDVQNTIIDGEVFDFSTYYLGGIPIAIRERFNISTPAFRGCMKNLKKTSGVVRLNDTVGVTKKCSEDWKLVRSASFSRGGQLSFTDLGLP PTDHLQASFGFQTFQPSGILLDHQTWTRNLQVTLEDGYIELSTSDSGSPIFKSPQTYMDGLLHYVSVISDNSGLRLLIDDQLLRNSKRLK HISSSRQSLRLGGSNFEGCISNVFVQRLSLSPEVLDLTSNSLKRDVSLGGCSLNKPPFLMLLKGSTRFNKTKTFRINQLLQDTPVASPRS VKVWQDACSPLPKTQANHGALQFGDIPTSHLLFKLPQELLKPRSQFAVDMQTTSSRGLVFHTGTKNSFMALYLSKGRLVFALGTDGKKLR IKSKEKCNDGKWHTVVFGHDGEKGRLVVDGLRAREGSLPGNSTISIRAPVYLGSPPSGKPKSLPTNSFVGCLKNFQLDSKPLYTPSSSFG VSSCLGGPLEKGIYFSEEGGHVVLAHSVLLGPEFKLVFSIRPRSLTGILIHIGSQPGKHLCVYLEAGKVTASMDSGAGGTSTSVTPKQSL CDGQWHSVAVTIKQHILHLELDTDSSYTAGQIPFPPASTQEPLHLGGAPANLTTLRIPVWKSFFGCLRNIHVNHIPVPVTEALEVQGPVS -------------------------------------------------------------- |
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Fusion Gene PPI Analysis for CDH2-LAMA3 |
Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in |
Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
Hgene | Hgene's interactors | Tgene | Tgene's interactors |
- Retained PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
- Lost PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
- Retained PPIs, but lost function due to frame-shift fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Related Drugs for CDH2-LAMA3 |
Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.8 2021-05-08) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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Related Diseases for CDH2-LAMA3 |
Diseases associated with fusion partners. (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Hgene | CDH2 | C0006142 | Malignant neoplasm of breast | 1 | CTD_human |
Hgene | CDH2 | C0013261 | Duane Retraction Syndrome | 1 | GENOMICS_ENGLAND |
Hgene | CDH2 | C0024623 | Malignant neoplasm of stomach | 1 | CTD_human |
Hgene | CDH2 | C0027626 | Neoplasm Invasiveness | 1 | CTD_human |
Hgene | CDH2 | C0027627 | Neoplasm Metastasis | 1 | CTD_human |
Hgene | CDH2 | C0027746 | Nerve Degeneration | 1 | CTD_human |
Hgene | CDH2 | C0038220 | Status Epilepticus | 1 | CTD_human |
Hgene | CDH2 | C0038356 | Stomach Neoplasms | 1 | CTD_human |
Hgene | CDH2 | C0151744 | Myocardial Ischemia | 1 | CTD_human |
Hgene | CDH2 | C0235874 | Disease Exacerbation | 1 | CTD_human |
Hgene | CDH2 | C0270823 | Petit mal status | 1 | CTD_human |
Hgene | CDH2 | C0311335 | Grand Mal Status Epilepticus | 1 | CTD_human |
Hgene | CDH2 | C0393734 | Complex Partial Status Epilepticus | 1 | CTD_human |
Hgene | CDH2 | C0454455 | Mirror movements disorder | 1 | GENOMICS_ENGLAND |
Hgene | CDH2 | C0557874 | Global developmental delay | 1 | GENOMICS_ENGLAND |
Hgene | CDH2 | C0678222 | Breast Carcinoma | 1 | CTD_human |
Hgene | CDH2 | C0744356 | Abnormality of the genital system | 1 | GENOMICS_ENGLAND |
Hgene | CDH2 | C0751522 | Status Epilepticus, Subclinical | 1 | CTD_human |
Hgene | CDH2 | C0751523 | Non-Convulsive Status Epilepticus | 1 | CTD_human |
Hgene | CDH2 | C0751524 | Simple Partial Status Epilepticus | 1 | CTD_human |
Hgene | CDH2 | C1257931 | Mammary Neoplasms, Human | 1 | CTD_human |
Hgene | CDH2 | C1458155 | Mammary Neoplasms | 1 | CTD_human |
Hgene | CDH2 | C1708349 | Hereditary Diffuse Gastric Cancer | 1 | CTD_human |
Hgene | CDH2 | C1837249 | Malformations of Cortical Development, Group II | 1 | GENOMICS_ENGLAND |
Hgene | CDH2 | C1842581 | Abnormal corpus callosum morphology | 1 | GENOMICS_ENGLAND |
Hgene | CDH2 | C3714756 | Intellectual Disability | 1 | GENOMICS_ENGLAND |
Hgene | CDH2 | C4316870 | Abnormality of the eye | 1 | GENOMICS_ENGLAND |
Hgene | CDH2 | C4704874 | Mammary Carcinoma, Human | 1 | CTD_human |
Tgene | LAMA3 | C1328355 | Laryngoonychocutaneous syndrome | 5 | CTD_human;GENOMICS_ENGLAND;ORPHANET |
Tgene | LAMA3 | C0079683 | Herlitz Disease | 4 | CTD_human;GENOMICS_ENGLAND |
Tgene | LAMA3 | C0079301 | Junctional Epidermolysis Bullosa | 3 | CTD_human;GENOMICS_ENGLAND |
Tgene | LAMA3 | C0268374 | Adult junctional epidermolysis bullosa (disorder) | 3 | CTD_human;GENOMICS_ENGLAND |
Tgene | LAMA3 | C0027339 | Nail Diseases | 1 | CTD_human |
Tgene | LAMA3 | C0037299 | Skin Ulcer | 1 | CTD_human |
Tgene | LAMA3 | C0079297 | Epidermolysis Bullosa Progressiva | 1 | CTD_human |
Tgene | LAMA3 | C0399367 | Amelogenesis imperfecta local hypoplastic form | 1 | GENOMICS_ENGLAND |