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Fusion Gene Summary | |
Fusion Gene ORF analysis | |
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Fusion Gene Sequence | |
Fusion Gene PPI analysis | |
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Fusion gene:CLIC1-NUDT3 (FusionGDB2 ID:17137) |
Fusion Gene Summary for CLIC1-NUDT3 |
Fusion gene summary |
Fusion gene information | Fusion gene name: CLIC1-NUDT3 | Fusion gene ID: 17137 | Hgene | Tgene | Gene symbol | CLIC1 | NUDT3 | Gene ID | 1192 | 11165 |
Gene name | chloride intracellular channel 1 | nudix hydrolase 3 | |
Synonyms | CL1C1|CLCNL1|G6|NCC27 | DIPP|DIPP-1|DIPP1 | |
Cytomap | 6p21.33 | 6p21.31 | |
Type of gene | protein-coding | protein-coding | |
Description | chloride intracellular channel protein 1RNCC proteinchloride channel ABPhRNCCnuclear chloride ion channel 27nuclear chloride ion channel proteinp64CLCPregulatory nuclear chloride ion channel protein | diphosphoinositol polyphosphate phosphohydrolase 1diadenosine 5',5'''-P1,P6-hexaphosphate hydrolase 1nucleoside diphosphate-linked moiety X motif 3nudix (nucleoside diphosphate linked moiety X)-type motif 3nudix motif 3 | |
Modification date | 20200313 | 20200313 | |
UniProtAcc | O00299 | . | |
Ensembl transtripts involved in fusion gene | ENST00000375784, ENST00000375779, ENST00000375780, ENST00000395892, ENST00000457485, ENST00000423804, ENST00000447369, ENST00000447338, ENST00000422167, ENST00000438708, ENST00000431921, ENST00000415179, ENST00000418285, ENST00000423055, ENST00000442045, ENST00000435242, ENST00000400052, ENST00000383404, ENST00000383405, ENST00000400058, ENST00000456863, ENST00000434202, ENST00000420458, ENST00000433916, ENST00000425464, ENST00000423143, ENST00000438750, ENST00000451546, | ENST00000607016, | |
Fusion gene scores | * DoF score | 5 X 5 X 4=100 | 13 X 7 X 8=728 |
# samples | 6 | 15 | |
** MAII score | log2(6/100*10)=-0.736965594166206 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(15/728*10)=-2.27897594970282 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
Context | PubMed: CLIC1 [Title/Abstract] AND NUDT3 [Title/Abstract] AND fusion [Title/Abstract] | ||
Most frequent breakpoint | CLIC1(31701343)-NUDT3(34263462), # samples:2 | ||
Anticipated loss of major functional domain due to fusion event. |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
Partner | Gene | GO ID | GO term | PubMed ID |
Hgene | CLIC1 | GO:0006821 | chloride transport | 9139710 |
Tgene | NUDT3 | GO:0071544 | diphosphoinositol polyphosphate catabolic process | 10585413 |
Fusion gene breakpoints across CLIC1 (5'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
Fusion gene breakpoints across NUDT3 (3'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Source | Disease | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
ChimerDB4 | SKCM | TCGA-BF-AAP4-01A | CLIC1 | chr6 | 31701343 | - | NUDT3 | chr6 | 34263462 | - |
ChimerDB4 | SKCM | TCGA-BF-AAP4-01A | CLIC1 | chr6 | 31701343 | - | NUDT3 | chr6 | 34263462 | - |
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Fusion Gene ORF analysis for CLIC1-NUDT3 |
Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
Frame-shift | ENST00000375784 | ENST00000607016 | CLIC1 | chr6 | 31701343 | - | NUDT3 | chr6 | 34263462 | - |
Frame-shift | ENST00000375779 | ENST00000607016 | CLIC1 | chr6 | 31701343 | - | NUDT3 | chr6 | 34263462 | - |
In-frame | ENST00000375780 | ENST00000607016 | CLIC1 | chr6 | 31701343 | - | NUDT3 | chr6 | 34263462 | - |
In-frame | ENST00000395892 | ENST00000607016 | CLIC1 | chr6 | 31701343 | - | NUDT3 | chr6 | 34263462 | - |
intron-3CDS | ENST00000457485 | ENST00000607016 | CLIC1 | chr6 | 31701343 | - | NUDT3 | chr6 | 34263462 | - |
intron-3CDS | ENST00000423804 | ENST00000607016 | CLIC1 | chr6 | 31701343 | - | NUDT3 | chr6 | 34263462 | - |
intron-3CDS | ENST00000447369 | ENST00000607016 | CLIC1 | chr6 | 31701343 | - | NUDT3 | chr6 | 34263462 | - |
intron-3CDS | ENST00000447338 | ENST00000607016 | CLIC1 | chr6 | 31701343 | - | NUDT3 | chr6 | 34263462 | - |
intron-3CDS | ENST00000422167 | ENST00000607016 | CLIC1 | chr6 | 31701343 | - | NUDT3 | chr6 | 34263462 | - |
intron-3CDS | ENST00000438708 | ENST00000607016 | CLIC1 | chr6 | 31701343 | - | NUDT3 | chr6 | 34263462 | - |
intron-3CDS | ENST00000431921 | ENST00000607016 | CLIC1 | chr6 | 31701343 | - | NUDT3 | chr6 | 34263462 | - |
intron-3CDS | ENST00000415179 | ENST00000607016 | CLIC1 | chr6 | 31701343 | - | NUDT3 | chr6 | 34263462 | - |
intron-3CDS | ENST00000418285 | ENST00000607016 | CLIC1 | chr6 | 31701343 | - | NUDT3 | chr6 | 34263462 | - |
intron-3CDS | ENST00000423055 | ENST00000607016 | CLIC1 | chr6 | 31701343 | - | NUDT3 | chr6 | 34263462 | - |
intron-3CDS | ENST00000442045 | ENST00000607016 | CLIC1 | chr6 | 31701343 | - | NUDT3 | chr6 | 34263462 | - |
intron-3CDS | ENST00000435242 | ENST00000607016 | CLIC1 | chr6 | 31701343 | - | NUDT3 | chr6 | 34263462 | - |
intron-3CDS | ENST00000400052 | ENST00000607016 | CLIC1 | chr6 | 31701343 | - | NUDT3 | chr6 | 34263462 | - |
intron-3CDS | ENST00000383404 | ENST00000607016 | CLIC1 | chr6 | 31701343 | - | NUDT3 | chr6 | 34263462 | - |
intron-3CDS | ENST00000383405 | ENST00000607016 | CLIC1 | chr6 | 31701343 | - | NUDT3 | chr6 | 34263462 | - |
intron-3CDS | ENST00000400058 | ENST00000607016 | CLIC1 | chr6 | 31701343 | - | NUDT3 | chr6 | 34263462 | - |
intron-3CDS | ENST00000456863 | ENST00000607016 | CLIC1 | chr6 | 31701343 | - | NUDT3 | chr6 | 34263462 | - |
intron-3CDS | ENST00000434202 | ENST00000607016 | CLIC1 | chr6 | 31701343 | - | NUDT3 | chr6 | 34263462 | - |
intron-3CDS | ENST00000420458 | ENST00000607016 | CLIC1 | chr6 | 31701343 | - | NUDT3 | chr6 | 34263462 | - |
intron-3CDS | ENST00000433916 | ENST00000607016 | CLIC1 | chr6 | 31701343 | - | NUDT3 | chr6 | 34263462 | - |
intron-3CDS | ENST00000425464 | ENST00000607016 | CLIC1 | chr6 | 31701343 | - | NUDT3 | chr6 | 34263462 | - |
intron-3CDS | ENST00000423143 | ENST00000607016 | CLIC1 | chr6 | 31701343 | - | NUDT3 | chr6 | 34263462 | - |
intron-3CDS | ENST00000438750 | ENST00000607016 | CLIC1 | chr6 | 31701343 | - | NUDT3 | chr6 | 34263462 | - |
intron-3CDS | ENST00000451546 | ENST00000607016 | CLIC1 | chr6 | 31701343 | - | NUDT3 | chr6 | 34263462 | - |
ORFfinder result based on the fusion transcript sequence of in-frame fusion genes. |
Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | Seq length (transcript) | BP loci (transcript) | Predicted start (transcript) | Predicted stop (transcript) | Seq length (amino acids) |
ENST00000375780 | CLIC1 | chr6 | 31701343 | - | ENST00000607016 | NUDT3 | chr6 | 34263462 | - | 10338 | 955 | 910 | 461 | 149 |
ENST00000395892 | CLIC1 | chr6 | 31701343 | - | ENST00000607016 | NUDT3 | chr6 | 34263462 | - | 9975 | 592 | 192 | 635 | 147 |
DeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated. |
Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | No-coding score | Coding score |
ENST00000375780 | ENST00000607016 | CLIC1 | chr6 | 31701343 | - | NUDT3 | chr6 | 34263462 | - | 0.008217408 | 0.99178255 |
ENST00000395892 | ENST00000607016 | CLIC1 | chr6 | 31701343 | - | NUDT3 | chr6 | 34263462 | - | 0.008047046 | 0.99195296 |
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Fusion Genomic Features for CLIC1-NUDT3 |
FusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints. |
Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | 1-p | p (fusion gene breakpoint) |
Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page. |
Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page. |
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Fusion Protein Features for CLIC1-NUDT3 |
Go to FGviewer for the breakpoints of chr6:31701343-chr6:34263462 - FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels. |
Main function of each fusion partner protein. (from UniProt) |
Hgene | Tgene |
CLIC1 | . |
FUNCTION: Can insert into membranes and form chloride ion channels. Channel activity depends on the pH. Membrane insertion seems to be redox-regulated and may occur only under oxydizing conditions. Involved in regulation of the cell cycle. {ECO:0000269|PubMed:10834939, ECO:0000269|PubMed:11195932, ECO:0000269|PubMed:11551966, ECO:0000269|PubMed:11940526, ECO:0000269|PubMed:11978800, ECO:0000269|PubMed:14613939, ECO:0000269|PubMed:9139710}. | FUNCTION: Might normally function as a transcriptional repressor. EWS-fusion-proteins (EFPS) may play a role in the tumorigenic process. They may disturb gene expression by mimicking, or interfering with the normal function of CTD-POLII within the transcription initiation complex. They may also contribute to an aberrant activation of the fusion protein target genes. |
Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | CLIC1 | chr6:31701343 | chr6:34263462 | ENST00000375779 | - | 5 | 7 | 2_90 | 127.33333333333333 | 242.0 | Region | Note=Required for insertion into the membrane |
Hgene | CLIC1 | chr6:31701343 | chr6:34263462 | ENST00000375780 | - | 5 | 7 | 2_90 | 127.33333333333333 | 242.0 | Region | Note=Required for insertion into the membrane |
Hgene | CLIC1 | chr6:31701343 | chr6:34263462 | ENST00000375784 | - | 4 | 6 | 2_90 | 127.33333333333333 | 242.0 | Region | Note=Required for insertion into the membrane |
Hgene | CLIC1 | chr6:31701343 | chr6:34263462 | ENST00000395892 | - | 6 | 8 | 2_90 | 127.33333333333333 | 242.0 | Region | Note=Required for insertion into the membrane |
Hgene | CLIC1 | chr6:31701343 | chr6:34263462 | ENST00000375779 | - | 5 | 7 | 26_46 | 127.33333333333333 | 242.0 | Transmembrane | Helical%3B Note%3DAfter insertion into the membrane |
Hgene | CLIC1 | chr6:31701343 | chr6:34263462 | ENST00000375780 | - | 5 | 7 | 26_46 | 127.33333333333333 | 242.0 | Transmembrane | Helical%3B Note%3DAfter insertion into the membrane |
Hgene | CLIC1 | chr6:31701343 | chr6:34263462 | ENST00000375784 | - | 4 | 6 | 26_46 | 127.33333333333333 | 242.0 | Transmembrane | Helical%3B Note%3DAfter insertion into the membrane |
Hgene | CLIC1 | chr6:31701343 | chr6:34263462 | ENST00000395892 | - | 6 | 8 | 26_46 | 127.33333333333333 | 242.0 | Transmembrane | Helical%3B Note%3DAfter insertion into the membrane |
Tgene | NUDT3 | chr6:31701343 | chr6:34263462 | ENST00000607016 | 1 | 5 | 89_91 | 70.0 | 173.0 | Region | Substrate binding |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | CLIC1 | chr6:31701343 | chr6:34263462 | ENST00000375779 | - | 5 | 7 | 93_233 | 127.33333333333333 | 242.0 | Domain | Note=GST C-terminal |
Hgene | CLIC1 | chr6:31701343 | chr6:34263462 | ENST00000375780 | - | 5 | 7 | 93_233 | 127.33333333333333 | 242.0 | Domain | Note=GST C-terminal |
Hgene | CLIC1 | chr6:31701343 | chr6:34263462 | ENST00000375784 | - | 4 | 6 | 93_233 | 127.33333333333333 | 242.0 | Domain | Note=GST C-terminal |
Hgene | CLIC1 | chr6:31701343 | chr6:34263462 | ENST00000383404 | - | 1 | 7 | 93_233 | 0 | 242.0 | Domain | Note=GST C-terminal |
Hgene | CLIC1 | chr6:31701343 | chr6:34263462 | ENST00000383405 | - | 1 | 7 | 93_233 | 0 | 242.0 | Domain | Note=GST C-terminal |
Hgene | CLIC1 | chr6:31701343 | chr6:34263462 | ENST00000395892 | - | 6 | 8 | 93_233 | 127.33333333333333 | 242.0 | Domain | Note=GST C-terminal |
Hgene | CLIC1 | chr6:31701343 | chr6:34263462 | ENST00000400052 | - | 1 | 6 | 93_233 | 0 | 242.0 | Domain | Note=GST C-terminal |
Hgene | CLIC1 | chr6:31701343 | chr6:34263462 | ENST00000400058 | - | 1 | 8 | 93_233 | 0 | 242.0 | Domain | Note=GST C-terminal |
Hgene | CLIC1 | chr6:31701343 | chr6:34263462 | ENST00000415179 | - | 1 | 8 | 93_233 | 0 | 242.0 | Domain | Note=GST C-terminal |
Hgene | CLIC1 | chr6:31701343 | chr6:34263462 | ENST00000418285 | - | 1 | 6 | 93_233 | 0 | 242.0 | Domain | Note=GST C-terminal |
Hgene | CLIC1 | chr6:31701343 | chr6:34263462 | ENST00000420458 | - | 1 | 7 | 93_233 | 0 | 242.0 | Domain | Note=GST C-terminal |
Hgene | CLIC1 | chr6:31701343 | chr6:34263462 | ENST00000422167 | - | 1 | 6 | 93_233 | 0 | 242.0 | Domain | Note=GST C-terminal |
Hgene | CLIC1 | chr6:31701343 | chr6:34263462 | ENST00000423055 | - | 1 | 7 | 93_233 | 0 | 242.0 | Domain | Note=GST C-terminal |
Hgene | CLIC1 | chr6:31701343 | chr6:34263462 | ENST00000423143 | - | 1 | 7 | 93_233 | 0 | 242.0 | Domain | Note=GST C-terminal |
Hgene | CLIC1 | chr6:31701343 | chr6:34263462 | ENST00000423804 | - | 1 | 7 | 93_233 | 0 | 242.0 | Domain | Note=GST C-terminal |
Hgene | CLIC1 | chr6:31701343 | chr6:34263462 | ENST00000425464 | - | 1 | 6 | 93_233 | 0 | 242.0 | Domain | Note=GST C-terminal |
Hgene | CLIC1 | chr6:31701343 | chr6:34263462 | ENST00000431921 | - | 1 | 7 | 93_233 | 0 | 242.0 | Domain | Note=GST C-terminal |
Hgene | CLIC1 | chr6:31701343 | chr6:34263462 | ENST00000433916 | - | 1 | 8 | 93_233 | 0 | 242.0 | Domain | Note=GST C-terminal |
Hgene | CLIC1 | chr6:31701343 | chr6:34263462 | ENST00000434202 | - | 1 | 7 | 93_233 | 0 | 242.0 | Domain | Note=GST C-terminal |
Hgene | CLIC1 | chr6:31701343 | chr6:34263462 | ENST00000435242 | - | 1 | 8 | 93_233 | 0 | 242.0 | Domain | Note=GST C-terminal |
Hgene | CLIC1 | chr6:31701343 | chr6:34263462 | ENST00000438708 | - | 1 | 7 | 93_233 | 0 | 242.0 | Domain | Note=GST C-terminal |
Hgene | CLIC1 | chr6:31701343 | chr6:34263462 | ENST00000438750 | - | 1 | 7 | 93_233 | 0 | 242.0 | Domain | Note=GST C-terminal |
Hgene | CLIC1 | chr6:31701343 | chr6:34263462 | ENST00000442045 | - | 1 | 7 | 93_233 | 0 | 242.0 | Domain | Note=GST C-terminal |
Hgene | CLIC1 | chr6:31701343 | chr6:34263462 | ENST00000447338 | - | 1 | 8 | 93_233 | 0 | 242.0 | Domain | Note=GST C-terminal |
Hgene | CLIC1 | chr6:31701343 | chr6:34263462 | ENST00000447369 | - | 1 | 7 | 93_233 | 0 | 242.0 | Domain | Note=GST C-terminal |
Hgene | CLIC1 | chr6:31701343 | chr6:34263462 | ENST00000451546 | - | 1 | 8 | 93_233 | 0 | 242.0 | Domain | Note=GST C-terminal |
Hgene | CLIC1 | chr6:31701343 | chr6:34263462 | ENST00000456863 | - | 1 | 6 | 93_233 | 0 | 242.0 | Domain | Note=GST C-terminal |
Hgene | CLIC1 | chr6:31701343 | chr6:34263462 | ENST00000457485 | - | 1 | 6 | 93_233 | 0 | 242.0 | Domain | Note=GST C-terminal |
Hgene | CLIC1 | chr6:31701343 | chr6:34263462 | ENST00000383404 | - | 1 | 7 | 2_90 | 0 | 242.0 | Region | Note=Required for insertion into the membrane |
Hgene | CLIC1 | chr6:31701343 | chr6:34263462 | ENST00000383405 | - | 1 | 7 | 2_90 | 0 | 242.0 | Region | Note=Required for insertion into the membrane |
Hgene | CLIC1 | chr6:31701343 | chr6:34263462 | ENST00000400052 | - | 1 | 6 | 2_90 | 0 | 242.0 | Region | Note=Required for insertion into the membrane |
Hgene | CLIC1 | chr6:31701343 | chr6:34263462 | ENST00000400058 | - | 1 | 8 | 2_90 | 0 | 242.0 | Region | Note=Required for insertion into the membrane |
Hgene | CLIC1 | chr6:31701343 | chr6:34263462 | ENST00000415179 | - | 1 | 8 | 2_90 | 0 | 242.0 | Region | Note=Required for insertion into the membrane |
Hgene | CLIC1 | chr6:31701343 | chr6:34263462 | ENST00000418285 | - | 1 | 6 | 2_90 | 0 | 242.0 | Region | Note=Required for insertion into the membrane |
Hgene | CLIC1 | chr6:31701343 | chr6:34263462 | ENST00000420458 | - | 1 | 7 | 2_90 | 0 | 242.0 | Region | Note=Required for insertion into the membrane |
Hgene | CLIC1 | chr6:31701343 | chr6:34263462 | ENST00000422167 | - | 1 | 6 | 2_90 | 0 | 242.0 | Region | Note=Required for insertion into the membrane |
Hgene | CLIC1 | chr6:31701343 | chr6:34263462 | ENST00000423055 | - | 1 | 7 | 2_90 | 0 | 242.0 | Region | Note=Required for insertion into the membrane |
Hgene | CLIC1 | chr6:31701343 | chr6:34263462 | ENST00000423143 | - | 1 | 7 | 2_90 | 0 | 242.0 | Region | Note=Required for insertion into the membrane |
Hgene | CLIC1 | chr6:31701343 | chr6:34263462 | ENST00000423804 | - | 1 | 7 | 2_90 | 0 | 242.0 | Region | Note=Required for insertion into the membrane |
Hgene | CLIC1 | chr6:31701343 | chr6:34263462 | ENST00000425464 | - | 1 | 6 | 2_90 | 0 | 242.0 | Region | Note=Required for insertion into the membrane |
Hgene | CLIC1 | chr6:31701343 | chr6:34263462 | ENST00000431921 | - | 1 | 7 | 2_90 | 0 | 242.0 | Region | Note=Required for insertion into the membrane |
Hgene | CLIC1 | chr6:31701343 | chr6:34263462 | ENST00000433916 | - | 1 | 8 | 2_90 | 0 | 242.0 | Region | Note=Required for insertion into the membrane |
Hgene | CLIC1 | chr6:31701343 | chr6:34263462 | ENST00000434202 | - | 1 | 7 | 2_90 | 0 | 242.0 | Region | Note=Required for insertion into the membrane |
Hgene | CLIC1 | chr6:31701343 | chr6:34263462 | ENST00000435242 | - | 1 | 8 | 2_90 | 0 | 242.0 | Region | Note=Required for insertion into the membrane |
Hgene | CLIC1 | chr6:31701343 | chr6:34263462 | ENST00000438708 | - | 1 | 7 | 2_90 | 0 | 242.0 | Region | Note=Required for insertion into the membrane |
Hgene | CLIC1 | chr6:31701343 | chr6:34263462 | ENST00000438750 | - | 1 | 7 | 2_90 | 0 | 242.0 | Region | Note=Required for insertion into the membrane |
Hgene | CLIC1 | chr6:31701343 | chr6:34263462 | ENST00000442045 | - | 1 | 7 | 2_90 | 0 | 242.0 | Region | Note=Required for insertion into the membrane |
Hgene | CLIC1 | chr6:31701343 | chr6:34263462 | ENST00000447338 | - | 1 | 8 | 2_90 | 0 | 242.0 | Region | Note=Required for insertion into the membrane |
Hgene | CLIC1 | chr6:31701343 | chr6:34263462 | ENST00000447369 | - | 1 | 7 | 2_90 | 0 | 242.0 | Region | Note=Required for insertion into the membrane |
Hgene | CLIC1 | chr6:31701343 | chr6:34263462 | ENST00000451546 | - | 1 | 8 | 2_90 | 0 | 242.0 | Region | Note=Required for insertion into the membrane |
Hgene | CLIC1 | chr6:31701343 | chr6:34263462 | ENST00000456863 | - | 1 | 6 | 2_90 | 0 | 242.0 | Region | Note=Required for insertion into the membrane |
Hgene | CLIC1 | chr6:31701343 | chr6:34263462 | ENST00000457485 | - | 1 | 6 | 2_90 | 0 | 242.0 | Region | Note=Required for insertion into the membrane |
Hgene | CLIC1 | chr6:31701343 | chr6:34263462 | ENST00000383404 | - | 1 | 7 | 26_46 | 0 | 242.0 | Transmembrane | Helical%3B Note%3DAfter insertion into the membrane |
Hgene | CLIC1 | chr6:31701343 | chr6:34263462 | ENST00000383405 | - | 1 | 7 | 26_46 | 0 | 242.0 | Transmembrane | Helical%3B Note%3DAfter insertion into the membrane |
Hgene | CLIC1 | chr6:31701343 | chr6:34263462 | ENST00000400052 | - | 1 | 6 | 26_46 | 0 | 242.0 | Transmembrane | Helical%3B Note%3DAfter insertion into the membrane |
Hgene | CLIC1 | chr6:31701343 | chr6:34263462 | ENST00000400058 | - | 1 | 8 | 26_46 | 0 | 242.0 | Transmembrane | Helical%3B Note%3DAfter insertion into the membrane |
Hgene | CLIC1 | chr6:31701343 | chr6:34263462 | ENST00000415179 | - | 1 | 8 | 26_46 | 0 | 242.0 | Transmembrane | Helical%3B Note%3DAfter insertion into the membrane |
Hgene | CLIC1 | chr6:31701343 | chr6:34263462 | ENST00000418285 | - | 1 | 6 | 26_46 | 0 | 242.0 | Transmembrane | Helical%3B Note%3DAfter insertion into the membrane |
Hgene | CLIC1 | chr6:31701343 | chr6:34263462 | ENST00000420458 | - | 1 | 7 | 26_46 | 0 | 242.0 | Transmembrane | Helical%3B Note%3DAfter insertion into the membrane |
Hgene | CLIC1 | chr6:31701343 | chr6:34263462 | ENST00000422167 | - | 1 | 6 | 26_46 | 0 | 242.0 | Transmembrane | Helical%3B Note%3DAfter insertion into the membrane |
Hgene | CLIC1 | chr6:31701343 | chr6:34263462 | ENST00000423055 | - | 1 | 7 | 26_46 | 0 | 242.0 | Transmembrane | Helical%3B Note%3DAfter insertion into the membrane |
Hgene | CLIC1 | chr6:31701343 | chr6:34263462 | ENST00000423143 | - | 1 | 7 | 26_46 | 0 | 242.0 | Transmembrane | Helical%3B Note%3DAfter insertion into the membrane |
Hgene | CLIC1 | chr6:31701343 | chr6:34263462 | ENST00000423804 | - | 1 | 7 | 26_46 | 0 | 242.0 | Transmembrane | Helical%3B Note%3DAfter insertion into the membrane |
Hgene | CLIC1 | chr6:31701343 | chr6:34263462 | ENST00000425464 | - | 1 | 6 | 26_46 | 0 | 242.0 | Transmembrane | Helical%3B Note%3DAfter insertion into the membrane |
Hgene | CLIC1 | chr6:31701343 | chr6:34263462 | ENST00000431921 | - | 1 | 7 | 26_46 | 0 | 242.0 | Transmembrane | Helical%3B Note%3DAfter insertion into the membrane |
Hgene | CLIC1 | chr6:31701343 | chr6:34263462 | ENST00000433916 | - | 1 | 8 | 26_46 | 0 | 242.0 | Transmembrane | Helical%3B Note%3DAfter insertion into the membrane |
Hgene | CLIC1 | chr6:31701343 | chr6:34263462 | ENST00000434202 | - | 1 | 7 | 26_46 | 0 | 242.0 | Transmembrane | Helical%3B Note%3DAfter insertion into the membrane |
Hgene | CLIC1 | chr6:31701343 | chr6:34263462 | ENST00000435242 | - | 1 | 8 | 26_46 | 0 | 242.0 | Transmembrane | Helical%3B Note%3DAfter insertion into the membrane |
Hgene | CLIC1 | chr6:31701343 | chr6:34263462 | ENST00000438708 | - | 1 | 7 | 26_46 | 0 | 242.0 | Transmembrane | Helical%3B Note%3DAfter insertion into the membrane |
Hgene | CLIC1 | chr6:31701343 | chr6:34263462 | ENST00000438750 | - | 1 | 7 | 26_46 | 0 | 242.0 | Transmembrane | Helical%3B Note%3DAfter insertion into the membrane |
Hgene | CLIC1 | chr6:31701343 | chr6:34263462 | ENST00000442045 | - | 1 | 7 | 26_46 | 0 | 242.0 | Transmembrane | Helical%3B Note%3DAfter insertion into the membrane |
Hgene | CLIC1 | chr6:31701343 | chr6:34263462 | ENST00000447338 | - | 1 | 8 | 26_46 | 0 | 242.0 | Transmembrane | Helical%3B Note%3DAfter insertion into the membrane |
Hgene | CLIC1 | chr6:31701343 | chr6:34263462 | ENST00000447369 | - | 1 | 7 | 26_46 | 0 | 242.0 | Transmembrane | Helical%3B Note%3DAfter insertion into the membrane |
Hgene | CLIC1 | chr6:31701343 | chr6:34263462 | ENST00000451546 | - | 1 | 8 | 26_46 | 0 | 242.0 | Transmembrane | Helical%3B Note%3DAfter insertion into the membrane |
Hgene | CLIC1 | chr6:31701343 | chr6:34263462 | ENST00000456863 | - | 1 | 6 | 26_46 | 0 | 242.0 | Transmembrane | Helical%3B Note%3DAfter insertion into the membrane |
Hgene | CLIC1 | chr6:31701343 | chr6:34263462 | ENST00000457485 | - | 1 | 6 | 26_46 | 0 | 242.0 | Transmembrane | Helical%3B Note%3DAfter insertion into the membrane |
Tgene | NUDT3 | chr6:31701343 | chr6:34263462 | ENST00000607016 | 1 | 5 | 17_142 | 70.0 | 173.0 | Domain | Nudix hydrolase | |
Tgene | NUDT3 | chr6:31701343 | chr6:34263462 | ENST00000607016 | 1 | 5 | 51_72 | 70.0 | 173.0 | Motif | Note=Nudix box | |
Tgene | NUDT3 | chr6:31701343 | chr6:34263462 | ENST00000607016 | 1 | 5 | 18_20 | 70.0 | 173.0 | Region | Substrate binding | |
Tgene | NUDT3 | chr6:31701343 | chr6:34263462 | ENST00000607016 | 1 | 5 | 39_41 | 70.0 | 173.0 | Region | Substrate binding |
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Fusion Gene Sequence for CLIC1-NUDT3 |
For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones. |
>In-frame_ENST00000375780_ENST00000607016_TCGA-BF-AAP4-01A_CLIC1_chr6_31701343_-_NUDT3_chr6_34263462_length(transcript)=10338nt_BP=955nt CCAAGTAGCTGGGATTACAGGTGCCCACCACCCCGCCTGGCAAATTTTTGTATTTTTAGTAGAGACAGGGTTTCACCATGTTGGCCAGTC TGGTCTTGACTCCCTGACCTCAGGTGATCCACCCCCCTTGGCCTCCTAAAGTGTTGGGATTACAGGCGTGAGCCACCTCACCCGGCCCCT AACTCTATTTCCTATGCCCAATCCCAAGTGTAGGCCACAAGGACTGCAAGTCCTAGTGCTGAGCTGGGCCCGGAGACAGTAGACTGCGGG GGGCACAGGACCTACTGAGACACCAGTCTGGGCAGCTCAGGGAGTGCTGGCGTCACCCCTTCCCTAATCCCAGGCTGCATGGCTAACGGT TCCTATCTGCAGTCCCAGCCTTCCACTTCCGAGTTCTTCTCTCAGACCACAGTCCCAGCAACCCAGAATTTGGATTGGAGTCTGGAAGAA ATGCAGAATGATTAAACGACCACCTTTCCATTTGAAGTCCCCATCCCTGAATCTTCACGGGTGTGCCCAAGCTCCCCTCCCAGTTCCCCC AGGGACGGCCACTTCCTGGTCCCCGACGCAACCATGGCTGAAGAACAACCGCAGGTCGAATTGTTCGTGAAGGCTGGCAGTGATGGGGCC AAGATTGGGAACTGCCCATTCTCCCAGAGACTGTTCATGGTACTGTGGCTCAAGGGAGTCACCTTCAATGTTACCACCGTTGACACCAAA AGGCGGACCGAGACAGTGCAGAAGCTGTGCCCAGGGGGGCAGCTCCCATTCCTGCTGTATGGCACTGAAGTGCACACAGACACCAACAAG ATTGAGGAATTTCTGGAGGCAGTGCTGTGCCCTCCCAGGTACCCCAAGCTGGCAGCTCTGAACCCTGAGTCCAACACAGCTGGGCTGGAC ATATTTGCCAAATTTTCTGCCTACATCAAGAATTCAAACCCAGCACTCAATGACAGCTGGAGTAAAAGGGACATTGGGAAGATTAGTTGG AATTTTTGAGAACCAGGAGAGGAAGCACAGGACGTATGTCTATGTGCTCATTGTCACTGAAGTGCTGGAAGACTGGGAAGATTCAGTTAA CATTGGAAGGAAGAGGGAATGGTTTAAAATAGAAGACGCCATAAAAGTGCTGCAGTATCACAAACCCGTGCAGGCATCATATTTTGAAAC ATTGAGGCAAGGCTACTCAGCCAACAATGGCACCCCAGTCGTGGCCACCACATACTCGGTTTCTGCTCAGAGCTCGATGTCAGGCATCAG ATGACTGAAGACTTCCTGTAAGAGAAATGGAAATTGGAAACTAGACTGAAGTGCAAATCTTCCCTCTCACCCTGGCTCTTTCCACTTCTC ACAGGCCTCCTCTTTCAAATAAGGCATGGTGGGCAGCAAAGAAAGGGTGTATTGATAATGTTGCTGTTTGGTGTTAAGTGATGGGGCTTT TTCTTCTGTTTTTATTGAGGGTGGGGGTTGGGTGTGTAATTTGTAAGTACTTTTGTGCATGATCTGTCCCTCCCTCTTCCCACCCCTGCA GTCCTCTGAAGAGAGGCCAACAGCCTTCCCCTGCCTTGGATTCTGAAGTGTTCCTGTTTGTCTTATCCTGGCCCTGGCCAGACGTTTTCT TTGATTTTTAATTTTTTTTTTTTATTAAAAGATACCAGTATGAGATGAAAACTTCCAATAATTTGTCCTATAATGTGCTGTACAGTTCAG TAGAGTGGTCACTTTCACTGCAGTATACATTTATCTACACATTATATATCGGACATATAATATGTAAATAAATGACTTCTAGAAAGAGAA ATTTGTTTAATTTTTCAAGGTTTTTTTCTCTTTTAATTTGGGCATTTCTAGAATTGAGAGCCTCACAATTAACATACCTTTTTGTTTTCG ATGCTAGTGGCTGGGCAGGTTGCCCTGTCCTTTCTCTATTTCCCAGTCATTGACTGTAGATATGGGAAGAGTTTAGCTACCTTCATAGTG CTCCCAGGACTCATGGCCTTTCCTTCTTTAAGCTGTATTTCCCTGCCCAGAAAGAAACAGGAAGAAACCTTTTTTTATTTTTTTATTTTT TTTTAACCAAGCAAGGAGCAAATGGCCTCAGCCCAGATCTGTAAAAACAATGATAGAAATTGAATTCTGCCCCACATGTTGACAGTAGAG TTGGAACTGGATTCTTGGGATTACTTATCTAAAAAACTGGAGCATCAGGTCCATTTCTGTTCTGCTGGTTTGGAATCTTTTCCGTAATGC TATTTATTGCCAACAATGGCCTCTCTTTGTGTCCATATATGCCTTACACCGTGCTGACCTGGGTATCATCCATGTGCTCTGAAGCATCCA ACTTTACTTTGCAGGTGCATCAATGTAGTCCTGTCCCTGAACTGAGTAACCGTGTTCCTGAAAAGTACACTAGGGAAATTCACCTGCTTG CTTGTCTTTGTATTGGCATGGCACTTGTGATTGCACCATGGAGCATGCTCAGAGCTATTAAATTGGTCTCCCATCTCCCACCAGGATATG AAAGGTCCATATGGGAGGCCACGTAATCACTTATTACAGTGGTTACATAATACACTGGCTCACTGCAGACTCTCTTGTTTTTTGATACAG TTTCGTGCTGGCTTCATTTGCCAATTGTGTTGTTTAGTTCGGAAGTAAGAGGGTCTTGAGATTGAGGGGTAGGGAGGGCTACACTGACTG ATCCGTGGCTTAAGACAGGAGATTATCTCTGTACTCCAGTGGCATCTCCTTAGCCAAGATGTGAAATTAAAATCATAGTTCGCCTCATTT AAAAATTCTAATAAAGCACTCAAACTTTGAAAAGCTTTTACTTTTCCCTCCTACTAAAAGAAATGTATGTACCTCATAGCCCTGTGTCAT TTAGTGTTCAGCACTTTTGGGAACATCAGTTGGTGAACTTTAAATTTTGCTGTCTACTCACTGGGCACGGTGGCTCACACCTGTAATCCC AGCACTTTGGGAGGCTGAGGCAGGTGGATCACCTGAGGTCAGGAGTTTGAGACCAGCCTGACCAACATGGTGAAACCCCGTCTCTACTAA AAATGCAGAAATTAGGTGGGCGCCTGTAATCCCAGCTACTTGGGAGGCTGAGGCGAGATAATCGCTTGAACCTGGGAGGCAGAGGTTGCA GTGAGCCGAGATTGCACCACTGTCGTCCAGCCTGGGTGATAAGAGTGAAACTCCATCTCAAAAAAAAAAAAAAAAAATTTTTTTTTTTTT TTTTGCTATATACTCTTAGTTTACATCCTCTCCCCCAATCTTCACACACAGAGCCAAAGAGCAGTTATATTCTTGGGATACCATGATACC TCTGGGAAAGGAATTATATTCCCAAGGAGAGGTCCCATTGGATAAGAACAATACCATGGGACTTGAGTCTGAATGCCAACTTACTATTCA CACATCCTTCTTAAAAACGAACACACTGTTTCTTTTCCTGACCTAGAGCATTCTAAAGTTCTGTTCAAATAAATAAAGGGCAAAATAAAG TAGATTTAACCAAGTGCCAGGTGGAATTCAAAAAACACATTCTTCCAGATAAATTCTACCTTTATGGTATGGATTTGAAAGTACTTTGCA GGAAAACAGTCAGTACTCTTTAAAAAGGGACTGCAGGGCTGGGTGTAGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCAAGGCA GGTGGGTCACTTGAGGCCAGGAGTTTGAGACCAGCCTGACCAACATGGCAAAACCCCATCTCTACTAAAATACAAAAATTAGCTGGGCAT GATGGTGCACTCCTGTAATCCCAGCTACTTGGTAGGCTGAAGCATGAGAATTGCTTAAACCTGGGAGGCAGAGGTTGCAGTAAGCCAAGA TCATGCCACTGCACTCCAGCCTGGGCAACAGAGTAAGACTCTGTCTTAATAAATAAATAAGAAAATAAAACGGAACTGCAGTGCTAACAG TAATTTATACATTTTTAAATGTTCTGAGTATGTTTTGACTGGGCTAGTGTAACAATATACTACCCTGAAAGTGCAGTTTTGATTGTTGTT GGTGTCTTTGGGTCAGGAAAGTGAACTGTGCCAAGAAGTATTTTTCAGTGACATGAATGGATTCCTGTTAATGCAATTGACTGAGAGATT GTGCTTACGCTTTCTTAACTGACAAAAAGAGGCTTTGTCCAACATCAGAATTGTTGAAACTGGTGCTGTTTTCTGTTGCACTGGGATTCT GATGATCTGGGATTTTCCCTCCTTGGCACAGTAAACACCATGACTGTCTTTATTGAGAATGTCGTCACAGTCCTTTAGTGATAGATTAGT TAGACCCATGGTTGCAATACCTTTATCTCCCCAAAGAAAATAATCAAAAGAAAGCACAAAAGCTACCCTGTTTGCAGAATATTTCACTGA CATTGATTTGTCATTAATTCTACCAGAGCTGACCTCATTCAGGCTTGATAGAAACAGGTTCCTATGTTTAGGGCAGATCCCTAGCCTCTC GCTCACAGTGAGTCTGCATGTCCTAGATTCTGGTTATTGCTGGAGCATCCATTAAAGTCTACCAAACTCAGGACAGAAGAAGATAGCAGT GGATTTGTAAAAATTTTTAGTTTATAAATTACAGTCATTGGGGAAACACTAGTAAGGTCATGTGATCTTTTGGACCAGGATTTTCTCTCT GTCTTCTCTCTGGGTGTGTGTGTGTGTATGTACAGAAGGGCTACCAGGAAGTGTCAACCATGTTAGATTTTCTGTAGTCTTCCAGAAACA GTGCAGCCCATACAACAGGAATCTTAATTTTCCTCACAGCAAATATAACAGGATGGAACAGTTAGTGTTTTGTTTTCACAAGTGTCCACC ACTCCATCTGCCCTGCATGGAGAGGGCTCTCTCACTGCTAGATCTAGGCTGAGCCATCTGGAAGGATCAAAGGGTGTGGGAGTATCACCC CCTCTCAGGCTGCAGAAGGTCTCGAGGGTGGCGTCACAGCAGGATTTCCGCCTTCTGCATTGCACTGCACAGCCCCATGGAACATGAGGC ACTTGAGGCCTTGCTTCTTGGAGCCTCTGGGGAGCAGAGTAGGTCACTGCCCTCTGGGAGTGTTTTGCAGTAGTTTTGTAAATGTGTTGC TACATAGTCAAGTTCCTTTGTGGCAAAGAAATATTTTGTTTTGATATTAGGAGCCAGCCCATGTAATGCCTCTCAGGCTTGCTTGCTTAG AAGAAAAAAGTCACCCTTTGTGGTTTTTAAGAAAAAAATTCTGTGCAGATCTGTTCCTCCTCCTGCTCCTTCCCTTTTCTCTACATACAG TGCTCATTGGAGGCTCCTGCTAAACCTTCTTAACCAGAGAAATAATAGGTATTTGTTAGACCTGAGTGTACATTTCACATGTTATCCTTC ACATATTTCTCATTTTCATCTAGTACTTTCTTAATGCCTTTGTTGGAGTCCGCATCCTCATCTTTAAAAAAAAAAAAAAAAAAACAGCTT AGCCTAAGCCACATTCACTTTTTTTAGTTCACAAAAAGGATTTAATAGCCACAATGTGATTTTTGCCACAACTGTGTGATTTTAATATTC TCTAATATCAAGGGCGGATTTAGAATTGCAGGAAATACCTGGAGAAATCACAGTGGAATGAATTTTTGCTTTAAGAGAAATGAGAGTTGG CTGTCTCTGTAATTGATAATACAGCTTCATCCTAGTCCCATCTGCATTTCAGAAAATAACCCTCATCTTTACAAAACACAGGACACTTGT GGGACAGTTAACTCAAGCAGCTATGGGGAGGGAGGAGATTATTGAATGGTGATTAAATAATGCAAATGGCTCTTCTGTTTCTTAAAGACT GTGGAAGAGGTCAGACTGCCCAGTTGAGGTGGGCAGTTCATACTGCTCAGTTGAGGTGGCAGTCATTTATTCTGAGTCCTGTTGGATAGA GCCTATCTCCTCAAGGCTACAGAGGCTTCCAGGATATGGAGCTGTGCATGTTAATGGCTCAGCCTTGCCTCCATCAGGGCACCTGCCTAA CTTGGAGCAAGTGGGAGAGCACCCTAGAGTCATCCTCTGTGCTGTTTCGTGAGTTTTGCAGCGGAGACTTCACCATCCGGAGGAGCTGTG TTTCTGTGTCACTTGGGATATCACCTAAAAATGAAACATTTGATATTTTAAGGTATAAAAAAAAAGTAAATTGGGGAACATTGGCTGCAG TCCCTAAAAGATACTGTTGTCTGTGCATCAGGTTAGCTTGAGGTCACCACAGGTCCTGGGAGCCCAGAGAGTTTAGGCATACTCTCCTTT GGAGGCCAGCAGCCTTTCACAAACCCTGCCTCTAAAAGGGCGGTTTCACATTTGACCATGTTTTTGCATTAGCCTCAGAAACTCTTGTCT TTAGCTGATAACCTTTGAGGGATGTGAGAAGCCTAGTTGGAGCATCTGAGAAAATGATACCTCTCACCTTCAAATTAATCAAATAGTTTG TCCTTCTAGTCCCCTTATAAATTAATAAATGGAGGGCTGGTCATGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGG TGGATCACAAGGTCAGGAGTTCAAGACCAGCCTGACCAATATGGTGAAACCCCATCTCTACTAAAAATACAAAAATTAGCCAGGTGTAGT GGCACGCTCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATCGCTTGAACCCAGGAGGTGGATGTTGCAGTGAGCCGAGATCC CGCCACTGCACTGCAGCCTAGGCGACAGAGCAAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAGAAAAGGGAAGGGAATCCCATTTTGT GATGATTTGGGCACACTACTTGAGCTGAGGCTAGCAGTCACATGATTTTGGCTGTCTCTGACCTGAAGCTTTTGAAGTAAGGTTATGTCT CTTCCCTGAAGCTTTGTTTATAGTGGTAATTTGGTGAGTTTGAGCTTTGAGCTTGTCTTAGAAAATAAGACTGTCCACCTGGGGAGGGGA GCTTATAGGGAACCCGTGTTAACTCAGAATGCTGAAGAAAGTGCTTTTAGCCAACAAAAGTAAGATTACTATCTAGAAGGTGGAAAGAAG TCATTGCTTCTGTTCCTCCAGCAGTCAGTTGACTCTAGGTTTCCTTTGGTTTATATCCCCAGTTCTTAATACTAAAACTTATTTGACTTC CTATCAGGAAGCACACAAAAAAAGCGTCATTTAAAACCCTGGATATAGGCTTTAAAGGATACAAAAACAGCAGCATTGTCGTTTTGCCAG GTTCATCACCATTTTGATGTGCTACCCATCCTTCCACCCTCCCTTTCCTGCCCCCAAGCCTCCCAGCCAGGCCAGATGTGAAGATTCTAT TAATCACTGTTTCAGAGAACATTAATTCTTGTATAGAATAATTATCTACTAAATTGCTTATTATCTGTGACTACCTTGCAGAGAACATCT CAACAGTGCAGTAAAATAGCTCTCCTAGACTTGAGCTTCCAGCCAGGCATTTAGATCACTCTTAAGCCTTTGTGGAATTCTGAGGAAAAA AAGCAAGATGCCTCAATGCCAATGCTGGGCCATAAGATTCTACTCCCCTCCCTGTAGGGTGGGGCGCGTGGCTCAGCTTTGGAAAATCAT TTTGCCAGTAATATTGCCTGTGAATCCCTTTAAGAAGTCGTCCTGATCTGAGCCTGTCTTTCTGAGCACTTTGGTGCTGAATTGAAAATG GTAAGCTAAAGCAGTGACAGATCCACGTAGCCTCTTTAACCTCTTTATTATCTTGCCAAAAAAAAAGTTTCTCAGGTTAAACCTTTGTCT TTAACCTCCCTTTGTTGTGGAGAAAATGTGTCACTAATCAGTGGTCCAAGGGATATCTAGCTTTGGTTACTCAGTTCCTGCAGCATAACA GATATGACTTATGCCAGGGAAGGTAGAGGCTGATTATGGAGACACCCAGGAACAGGAATAAGAAGGGATAGGTCTGCTCCACGTAGAACC TCCCCAGATCGGAAGTTAAGTCTTGGAGAGTTTCCAAAGTGCTGAAGTAAAAAGGAGACTTGGAGGGCCTTTGCTTAATGAGCAAGAGGC TTGTGTCCTCCCAAGAACATGAGGGAGTTCAGAAGGGAGCTATAGCTCACAGACAGAAACCTGCCCGCTCACCCCATCCCTCGTGACTGG GAGCATGTTTGCTCAGAATTTTCTAAGAGGACTCTCCCTTCAAAAATCCAATTTGCTCCCAGAATGTTGTTTAGCCTCTGAGAATCTCAC TCTTTCATTTCCATCTGTGAATGGACATAGATGTGTTGCTCAGGGATCAGAAACATCAGAGTCCAGGGCCCAGTGGCATGGTGTTGCATT AGTAGTTAGAAAAGTAATTGGTCAGCTCTACTGTAAAAGAAATAAGTATGTAGTACAGTTTTGTAAATGTCAGGTCTGTTCTATTGTTTT GTGATCTGAAGACTGTCAAACTGGTTGATAATCAAAGAAAAGGTTGGTGGTTAGAATAAGTAAAATTTCAGTTAGAAAGATATAGCTTAC CAGTTTTCCATGTGCTTAAGGAAGTCAAGAATATTTCAGGTTGTTGAGAACTGTTGTAAAATGGAATTGAAGCTAGTGTCTCTCACCTTC TTAGGTGTATCAGAGAGAGGAAGTGGAAGGCCAGTAGTAGCATCTTCATACTTACTTTTGCCAGCCCAGCCTCCATTTCAAAGACTTTGT CTTCCATCCTATCCAATGACATGGTCAGGGATGGGCTCTGAGGAGGCAGTGAGGCCCCACCTTGGTTTGCTCCACTGTGGTGTGTAGTCT CCAAACAGCTTAAGGGTTTTTAAGTTTTCTCACGATTACCTCCACTCCACTCATCTACTATCAGCATCAGAAAGGTTAACATCCCTGGGA CCATTCTACTTATAAAAGAGATGAACTAGTGTGCTTTCTCCCCTTTTCCAGGTGTGCCATCCATATACAATCTCCTCTTGGCCAAGTTCA ACAAATGTTTCCAGGGAACCCCGTGGGTTGAGGCAAAGTAGCCAAGATGTATTGAGTTAAGTTTTTCTAGAGGACAAAAGTATTTCTTGT CCCTTTTCCCTCATGCTCATATGTTTTAGCTGAGGCGTAAATGGCCAAGTTGAGTAATATCTGTGGAACTGAGACAGAGAGCCAGGGACC CATGTACCCAGGGACCAGTCCCCTGGGGAATCACACAGTGGCTCAGACTAGACTGCTCTATCCCACCAGAACTCTGCTGCTGTTCATTTC CATCAGGACCACCCAGGAAAGCAAATAAGTTAGCCTTCTCATCATTAGGTCACCTAATCTCTTGGGTTGCAGGATGAGAGCATATATAGA TCTCCTGTTTAGAGAGTGTGTTCATAATTGTAGAAAGGGATAGAAAATGGAATAACCAAGAGGCTGTGTCATTTTTTAAGAGGATGGCAA GGATGACCTCAAATGAGCTCAACAAAACTGGGAATCCAAGGAATGGTGCTTGTAGGGAAAGAGAGGTCAGTTGTGGTCCTTAAACCTCTT GGCACCTTGTGCGGGTTATAAAACAAGGAGCTGGAGTAAAATTGCCCTTACCCCCAATCCAAATGCTGTCCAGGATTTAGGAGCTACCCA ACCTGTGGTTATATGGTGTTGGTTTCCATTTTTTGTTTGTTTGCTTGTTTCCAAAATAGCCTTGCTTGGTACTGCATGGAAAGTTCAAGC TTTTCTTCTTGCCCGCTCAGGGCTGGCCTCTTCCCCGTGTCTTCACAGCGTCCCTAAGGAAGATTTTTGCAGCACTCTCTGGAGCTGAGG GGAGTGAAATTTGGTCCAGAGAAGGCGGAAGGAAATAGTTTTCCTGTTTCCTTTTCTCGAGGTGGATGTCCTCAGGCTTCCTTCACACCT CCTTCTCATGGGTGCGGCTGGCAGTACAGTCAGGCTGTGGAGGAGGGCTGAGAAGAAAGGGGCACTGGTCCAGCCCCAGGTTTGGTCTGA GACAGGTACACAGCAGATACCATCCCACCTTCCTCTCTAAAGAACAGGCCAGCCACACATATAACCCTTTCCCTACTTTACTAATGTATC CCTTATGTGGTACCAGCAATGGAGGACAGGCAGACTTACCCCCTGCCATCTAGAGAGAATGTTGTTATTACCCGTAAAACTTGACCACCC CCATATCCCACTCCTTTTTGTAAAAACAAATGCTTAAACCTGTGAGCCTGCCGTTCCTTTCTATGTGTTAATCAGTTTCCTTCCATTTGA >In-frame_ENST00000375780_ENST00000607016_TCGA-BF-AAP4-01A_CLIC1_chr6_31701343_-_NUDT3_chr6_34263462_length(amino acids)=149AA_start in transcript=910_stop in transcript=461 MANMSSPAVLDSGFRAASLGYLGGHSTASRNSSILLVSVCTSVPYSRNGSCPPGHSFCTVSVRLLVSTVVTLKVTPLSHSTMNSLWENGQ -------------------------------------------------------------- >In-frame_ENST00000395892_ENST00000607016_TCGA-BF-AAP4-01A_CLIC1_chr6_31701343_-_NUDT3_chr6_34263462_length(transcript)=9975nt_BP=592nt GGATTTGATTGGCGCAGTGGGAAGCCCGCGAGAAGAGGTGGAAGCATTCGAATTACATCAAATTCTGGCAGAGAGAAGTAGTTCTGATCA GAACACTCACACCCCTACTGGGACATGCCCATACCCCTTCGCACTTCTACACACCCCTGAAGACAGAGAGCCCCTCCCAGTTCCCCCAGG GACGGCCACTTCCTGGTCCCCGACGCAACCATGGCTGAAGAACAACCGCAGGTCGAATTGTTCGTGAAGGCTGGCAGTGATGGGGCCAAG ATTGGGAACTGCCCATTCTCCCAGAGACTGTTCATGGTACTGTGGCTCAAGGGAGTCACCTTCAATGTTACCACCGTTGACACCAAAAGG CGGACCGAGACAGTGCAGAAGCTGTGCCCAGGGGGGCAGCTCCCATTCCTGCTGTATGGCACTGAAGTGCACACAGACACCAACAAGATT GAGGAATTTCTGGAGGCAGTGCTGTGCCCTCCCAGGTACCCCAAGCTGGCAGCTCTGAACCCTGAGTCCAACACAGCTGGGCTGGACATA TTTGCCAAATTTTCTGCCTACATCAAGAATTCAAACCCAGCACTCAATGACAGCTGGAGTAAAAGGGACATTGGGAAGATTAGTTGGAAT TTTTGAGAACCAGGAGAGGAAGCACAGGACGTATGTCTATGTGCTCATTGTCACTGAAGTGCTGGAAGACTGGGAAGATTCAGTTAACAT TGGAAGGAAGAGGGAATGGTTTAAAATAGAAGACGCCATAAAAGTGCTGCAGTATCACAAACCCGTGCAGGCATCATATTTTGAAACATT GAGGCAAGGCTACTCAGCCAACAATGGCACCCCAGTCGTGGCCACCACATACTCGGTTTCTGCTCAGAGCTCGATGTCAGGCATCAGATG ACTGAAGACTTCCTGTAAGAGAAATGGAAATTGGAAACTAGACTGAAGTGCAAATCTTCCCTCTCACCCTGGCTCTTTCCACTTCTCACA GGCCTCCTCTTTCAAATAAGGCATGGTGGGCAGCAAAGAAAGGGTGTATTGATAATGTTGCTGTTTGGTGTTAAGTGATGGGGCTTTTTC TTCTGTTTTTATTGAGGGTGGGGGTTGGGTGTGTAATTTGTAAGTACTTTTGTGCATGATCTGTCCCTCCCTCTTCCCACCCCTGCAGTC CTCTGAAGAGAGGCCAACAGCCTTCCCCTGCCTTGGATTCTGAAGTGTTCCTGTTTGTCTTATCCTGGCCCTGGCCAGACGTTTTCTTTG ATTTTTAATTTTTTTTTTTTATTAAAAGATACCAGTATGAGATGAAAACTTCCAATAATTTGTCCTATAATGTGCTGTACAGTTCAGTAG AGTGGTCACTTTCACTGCAGTATACATTTATCTACACATTATATATCGGACATATAATATGTAAATAAATGACTTCTAGAAAGAGAAATT TGTTTAATTTTTCAAGGTTTTTTTCTCTTTTAATTTGGGCATTTCTAGAATTGAGAGCCTCACAATTAACATACCTTTTTGTTTTCGATG CTAGTGGCTGGGCAGGTTGCCCTGTCCTTTCTCTATTTCCCAGTCATTGACTGTAGATATGGGAAGAGTTTAGCTACCTTCATAGTGCTC CCAGGACTCATGGCCTTTCCTTCTTTAAGCTGTATTTCCCTGCCCAGAAAGAAACAGGAAGAAACCTTTTTTTATTTTTTTATTTTTTTT TAACCAAGCAAGGAGCAAATGGCCTCAGCCCAGATCTGTAAAAACAATGATAGAAATTGAATTCTGCCCCACATGTTGACAGTAGAGTTG GAACTGGATTCTTGGGATTACTTATCTAAAAAACTGGAGCATCAGGTCCATTTCTGTTCTGCTGGTTTGGAATCTTTTCCGTAATGCTAT TTATTGCCAACAATGGCCTCTCTTTGTGTCCATATATGCCTTACACCGTGCTGACCTGGGTATCATCCATGTGCTCTGAAGCATCCAACT TTACTTTGCAGGTGCATCAATGTAGTCCTGTCCCTGAACTGAGTAACCGTGTTCCTGAAAAGTACACTAGGGAAATTCACCTGCTTGCTT GTCTTTGTATTGGCATGGCACTTGTGATTGCACCATGGAGCATGCTCAGAGCTATTAAATTGGTCTCCCATCTCCCACCAGGATATGAAA GGTCCATATGGGAGGCCACGTAATCACTTATTACAGTGGTTACATAATACACTGGCTCACTGCAGACTCTCTTGTTTTTTGATACAGTTT CGTGCTGGCTTCATTTGCCAATTGTGTTGTTTAGTTCGGAAGTAAGAGGGTCTTGAGATTGAGGGGTAGGGAGGGCTACACTGACTGATC CGTGGCTTAAGACAGGAGATTATCTCTGTACTCCAGTGGCATCTCCTTAGCCAAGATGTGAAATTAAAATCATAGTTCGCCTCATTTAAA AATTCTAATAAAGCACTCAAACTTTGAAAAGCTTTTACTTTTCCCTCCTACTAAAAGAAATGTATGTACCTCATAGCCCTGTGTCATTTA GTGTTCAGCACTTTTGGGAACATCAGTTGGTGAACTTTAAATTTTGCTGTCTACTCACTGGGCACGGTGGCTCACACCTGTAATCCCAGC ACTTTGGGAGGCTGAGGCAGGTGGATCACCTGAGGTCAGGAGTTTGAGACCAGCCTGACCAACATGGTGAAACCCCGTCTCTACTAAAAA TGCAGAAATTAGGTGGGCGCCTGTAATCCCAGCTACTTGGGAGGCTGAGGCGAGATAATCGCTTGAACCTGGGAGGCAGAGGTTGCAGTG AGCCGAGATTGCACCACTGTCGTCCAGCCTGGGTGATAAGAGTGAAACTCCATCTCAAAAAAAAAAAAAAAAAATTTTTTTTTTTTTTTT TGCTATATACTCTTAGTTTACATCCTCTCCCCCAATCTTCACACACAGAGCCAAAGAGCAGTTATATTCTTGGGATACCATGATACCTCT GGGAAAGGAATTATATTCCCAAGGAGAGGTCCCATTGGATAAGAACAATACCATGGGACTTGAGTCTGAATGCCAACTTACTATTCACAC ATCCTTCTTAAAAACGAACACACTGTTTCTTTTCCTGACCTAGAGCATTCTAAAGTTCTGTTCAAATAAATAAAGGGCAAAATAAAGTAG ATTTAACCAAGTGCCAGGTGGAATTCAAAAAACACATTCTTCCAGATAAATTCTACCTTTATGGTATGGATTTGAAAGTACTTTGCAGGA AAACAGTCAGTACTCTTTAAAAAGGGACTGCAGGGCTGGGTGTAGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCAAGGCAGGT GGGTCACTTGAGGCCAGGAGTTTGAGACCAGCCTGACCAACATGGCAAAACCCCATCTCTACTAAAATACAAAAATTAGCTGGGCATGAT GGTGCACTCCTGTAATCCCAGCTACTTGGTAGGCTGAAGCATGAGAATTGCTTAAACCTGGGAGGCAGAGGTTGCAGTAAGCCAAGATCA TGCCACTGCACTCCAGCCTGGGCAACAGAGTAAGACTCTGTCTTAATAAATAAATAAGAAAATAAAACGGAACTGCAGTGCTAACAGTAA TTTATACATTTTTAAATGTTCTGAGTATGTTTTGACTGGGCTAGTGTAACAATATACTACCCTGAAAGTGCAGTTTTGATTGTTGTTGGT GTCTTTGGGTCAGGAAAGTGAACTGTGCCAAGAAGTATTTTTCAGTGACATGAATGGATTCCTGTTAATGCAATTGACTGAGAGATTGTG CTTACGCTTTCTTAACTGACAAAAAGAGGCTTTGTCCAACATCAGAATTGTTGAAACTGGTGCTGTTTTCTGTTGCACTGGGATTCTGAT GATCTGGGATTTTCCCTCCTTGGCACAGTAAACACCATGACTGTCTTTATTGAGAATGTCGTCACAGTCCTTTAGTGATAGATTAGTTAG ACCCATGGTTGCAATACCTTTATCTCCCCAAAGAAAATAATCAAAAGAAAGCACAAAAGCTACCCTGTTTGCAGAATATTTCACTGACAT TGATTTGTCATTAATTCTACCAGAGCTGACCTCATTCAGGCTTGATAGAAACAGGTTCCTATGTTTAGGGCAGATCCCTAGCCTCTCGCT CACAGTGAGTCTGCATGTCCTAGATTCTGGTTATTGCTGGAGCATCCATTAAAGTCTACCAAACTCAGGACAGAAGAAGATAGCAGTGGA TTTGTAAAAATTTTTAGTTTATAAATTACAGTCATTGGGGAAACACTAGTAAGGTCATGTGATCTTTTGGACCAGGATTTTCTCTCTGTC TTCTCTCTGGGTGTGTGTGTGTGTATGTACAGAAGGGCTACCAGGAAGTGTCAACCATGTTAGATTTTCTGTAGTCTTCCAGAAACAGTG CAGCCCATACAACAGGAATCTTAATTTTCCTCACAGCAAATATAACAGGATGGAACAGTTAGTGTTTTGTTTTCACAAGTGTCCACCACT CCATCTGCCCTGCATGGAGAGGGCTCTCTCACTGCTAGATCTAGGCTGAGCCATCTGGAAGGATCAAAGGGTGTGGGAGTATCACCCCCT CTCAGGCTGCAGAAGGTCTCGAGGGTGGCGTCACAGCAGGATTTCCGCCTTCTGCATTGCACTGCACAGCCCCATGGAACATGAGGCACT TGAGGCCTTGCTTCTTGGAGCCTCTGGGGAGCAGAGTAGGTCACTGCCCTCTGGGAGTGTTTTGCAGTAGTTTTGTAAATGTGTTGCTAC ATAGTCAAGTTCCTTTGTGGCAAAGAAATATTTTGTTTTGATATTAGGAGCCAGCCCATGTAATGCCTCTCAGGCTTGCTTGCTTAGAAG AAAAAAGTCACCCTTTGTGGTTTTTAAGAAAAAAATTCTGTGCAGATCTGTTCCTCCTCCTGCTCCTTCCCTTTTCTCTACATACAGTGC TCATTGGAGGCTCCTGCTAAACCTTCTTAACCAGAGAAATAATAGGTATTTGTTAGACCTGAGTGTACATTTCACATGTTATCCTTCACA TATTTCTCATTTTCATCTAGTACTTTCTTAATGCCTTTGTTGGAGTCCGCATCCTCATCTTTAAAAAAAAAAAAAAAAAAACAGCTTAGC CTAAGCCACATTCACTTTTTTTAGTTCACAAAAAGGATTTAATAGCCACAATGTGATTTTTGCCACAACTGTGTGATTTTAATATTCTCT AATATCAAGGGCGGATTTAGAATTGCAGGAAATACCTGGAGAAATCACAGTGGAATGAATTTTTGCTTTAAGAGAAATGAGAGTTGGCTG TCTCTGTAATTGATAATACAGCTTCATCCTAGTCCCATCTGCATTTCAGAAAATAACCCTCATCTTTACAAAACACAGGACACTTGTGGG ACAGTTAACTCAAGCAGCTATGGGGAGGGAGGAGATTATTGAATGGTGATTAAATAATGCAAATGGCTCTTCTGTTTCTTAAAGACTGTG GAAGAGGTCAGACTGCCCAGTTGAGGTGGGCAGTTCATACTGCTCAGTTGAGGTGGCAGTCATTTATTCTGAGTCCTGTTGGATAGAGCC TATCTCCTCAAGGCTACAGAGGCTTCCAGGATATGGAGCTGTGCATGTTAATGGCTCAGCCTTGCCTCCATCAGGGCACCTGCCTAACTT GGAGCAAGTGGGAGAGCACCCTAGAGTCATCCTCTGTGCTGTTTCGTGAGTTTTGCAGCGGAGACTTCACCATCCGGAGGAGCTGTGTTT CTGTGTCACTTGGGATATCACCTAAAAATGAAACATTTGATATTTTAAGGTATAAAAAAAAAGTAAATTGGGGAACATTGGCTGCAGTCC CTAAAAGATACTGTTGTCTGTGCATCAGGTTAGCTTGAGGTCACCACAGGTCCTGGGAGCCCAGAGAGTTTAGGCATACTCTCCTTTGGA GGCCAGCAGCCTTTCACAAACCCTGCCTCTAAAAGGGCGGTTTCACATTTGACCATGTTTTTGCATTAGCCTCAGAAACTCTTGTCTTTA GCTGATAACCTTTGAGGGATGTGAGAAGCCTAGTTGGAGCATCTGAGAAAATGATACCTCTCACCTTCAAATTAATCAAATAGTTTGTCC TTCTAGTCCCCTTATAAATTAATAAATGGAGGGCTGGTCATGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGG ATCACAAGGTCAGGAGTTCAAGACCAGCCTGACCAATATGGTGAAACCCCATCTCTACTAAAAATACAAAAATTAGCCAGGTGTAGTGGC ACGCTCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATCGCTTGAACCCAGGAGGTGGATGTTGCAGTGAGCCGAGATCCCGC CACTGCACTGCAGCCTAGGCGACAGAGCAAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAGAAAAGGGAAGGGAATCCCATTTTGTGAT GATTTGGGCACACTACTTGAGCTGAGGCTAGCAGTCACATGATTTTGGCTGTCTCTGACCTGAAGCTTTTGAAGTAAGGTTATGTCTCTT CCCTGAAGCTTTGTTTATAGTGGTAATTTGGTGAGTTTGAGCTTTGAGCTTGTCTTAGAAAATAAGACTGTCCACCTGGGGAGGGGAGCT TATAGGGAACCCGTGTTAACTCAGAATGCTGAAGAAAGTGCTTTTAGCCAACAAAAGTAAGATTACTATCTAGAAGGTGGAAAGAAGTCA TTGCTTCTGTTCCTCCAGCAGTCAGTTGACTCTAGGTTTCCTTTGGTTTATATCCCCAGTTCTTAATACTAAAACTTATTTGACTTCCTA TCAGGAAGCACACAAAAAAAGCGTCATTTAAAACCCTGGATATAGGCTTTAAAGGATACAAAAACAGCAGCATTGTCGTTTTGCCAGGTT CATCACCATTTTGATGTGCTACCCATCCTTCCACCCTCCCTTTCCTGCCCCCAAGCCTCCCAGCCAGGCCAGATGTGAAGATTCTATTAA TCACTGTTTCAGAGAACATTAATTCTTGTATAGAATAATTATCTACTAAATTGCTTATTATCTGTGACTACCTTGCAGAGAACATCTCAA CAGTGCAGTAAAATAGCTCTCCTAGACTTGAGCTTCCAGCCAGGCATTTAGATCACTCTTAAGCCTTTGTGGAATTCTGAGGAAAAAAAG CAAGATGCCTCAATGCCAATGCTGGGCCATAAGATTCTACTCCCCTCCCTGTAGGGTGGGGCGCGTGGCTCAGCTTTGGAAAATCATTTT GCCAGTAATATTGCCTGTGAATCCCTTTAAGAAGTCGTCCTGATCTGAGCCTGTCTTTCTGAGCACTTTGGTGCTGAATTGAAAATGGTA AGCTAAAGCAGTGACAGATCCACGTAGCCTCTTTAACCTCTTTATTATCTTGCCAAAAAAAAAGTTTCTCAGGTTAAACCTTTGTCTTTA ACCTCCCTTTGTTGTGGAGAAAATGTGTCACTAATCAGTGGTCCAAGGGATATCTAGCTTTGGTTACTCAGTTCCTGCAGCATAACAGAT ATGACTTATGCCAGGGAAGGTAGAGGCTGATTATGGAGACACCCAGGAACAGGAATAAGAAGGGATAGGTCTGCTCCACGTAGAACCTCC CCAGATCGGAAGTTAAGTCTTGGAGAGTTTCCAAAGTGCTGAAGTAAAAAGGAGACTTGGAGGGCCTTTGCTTAATGAGCAAGAGGCTTG TGTCCTCCCAAGAACATGAGGGAGTTCAGAAGGGAGCTATAGCTCACAGACAGAAACCTGCCCGCTCACCCCATCCCTCGTGACTGGGAG CATGTTTGCTCAGAATTTTCTAAGAGGACTCTCCCTTCAAAAATCCAATTTGCTCCCAGAATGTTGTTTAGCCTCTGAGAATCTCACTCT TTCATTTCCATCTGTGAATGGACATAGATGTGTTGCTCAGGGATCAGAAACATCAGAGTCCAGGGCCCAGTGGCATGGTGTTGCATTAGT AGTTAGAAAAGTAATTGGTCAGCTCTACTGTAAAAGAAATAAGTATGTAGTACAGTTTTGTAAATGTCAGGTCTGTTCTATTGTTTTGTG ATCTGAAGACTGTCAAACTGGTTGATAATCAAAGAAAAGGTTGGTGGTTAGAATAAGTAAAATTTCAGTTAGAAAGATATAGCTTACCAG TTTTCCATGTGCTTAAGGAAGTCAAGAATATTTCAGGTTGTTGAGAACTGTTGTAAAATGGAATTGAAGCTAGTGTCTCTCACCTTCTTA GGTGTATCAGAGAGAGGAAGTGGAAGGCCAGTAGTAGCATCTTCATACTTACTTTTGCCAGCCCAGCCTCCATTTCAAAGACTTTGTCTT CCATCCTATCCAATGACATGGTCAGGGATGGGCTCTGAGGAGGCAGTGAGGCCCCACCTTGGTTTGCTCCACTGTGGTGTGTAGTCTCCA AACAGCTTAAGGGTTTTTAAGTTTTCTCACGATTACCTCCACTCCACTCATCTACTATCAGCATCAGAAAGGTTAACATCCCTGGGACCA TTCTACTTATAAAAGAGATGAACTAGTGTGCTTTCTCCCCTTTTCCAGGTGTGCCATCCATATACAATCTCCTCTTGGCCAAGTTCAACA AATGTTTCCAGGGAACCCCGTGGGTTGAGGCAAAGTAGCCAAGATGTATTGAGTTAAGTTTTTCTAGAGGACAAAAGTATTTCTTGTCCC TTTTCCCTCATGCTCATATGTTTTAGCTGAGGCGTAAATGGCCAAGTTGAGTAATATCTGTGGAACTGAGACAGAGAGCCAGGGACCCAT GTACCCAGGGACCAGTCCCCTGGGGAATCACACAGTGGCTCAGACTAGACTGCTCTATCCCACCAGAACTCTGCTGCTGTTCATTTCCAT CAGGACCACCCAGGAAAGCAAATAAGTTAGCCTTCTCATCATTAGGTCACCTAATCTCTTGGGTTGCAGGATGAGAGCATATATAGATCT CCTGTTTAGAGAGTGTGTTCATAATTGTAGAAAGGGATAGAAAATGGAATAACCAAGAGGCTGTGTCATTTTTTAAGAGGATGGCAAGGA TGACCTCAAATGAGCTCAACAAAACTGGGAATCCAAGGAATGGTGCTTGTAGGGAAAGAGAGGTCAGTTGTGGTCCTTAAACCTCTTGGC ACCTTGTGCGGGTTATAAAACAAGGAGCTGGAGTAAAATTGCCCTTACCCCCAATCCAAATGCTGTCCAGGATTTAGGAGCTACCCAACC TGTGGTTATATGGTGTTGGTTTCCATTTTTTGTTTGTTTGCTTGTTTCCAAAATAGCCTTGCTTGGTACTGCATGGAAAGTTCAAGCTTT TCTTCTTGCCCGCTCAGGGCTGGCCTCTTCCCCGTGTCTTCACAGCGTCCCTAAGGAAGATTTTTGCAGCACTCTCTGGAGCTGAGGGGA GTGAAATTTGGTCCAGAGAAGGCGGAAGGAAATAGTTTTCCTGTTTCCTTTTCTCGAGGTGGATGTCCTCAGGCTTCCTTCACACCTCCT TCTCATGGGTGCGGCTGGCAGTACAGTCAGGCTGTGGAGGAGGGCTGAGAAGAAAGGGGCACTGGTCCAGCCCCAGGTTTGGTCTGAGAC AGGTACACAGCAGATACCATCCCACCTTCCTCTCTAAAGAACAGGCCAGCCACACATATAACCCTTTCCCTACTTTACTAATGTATCCCT TATGTGGTACCAGCAATGGAGGACAGGCAGACTTACCCCCTGCCATCTAGAGAGAATGTTGTTATTACCCGTAAAACTTGACCACCCCCA TATCCCACTCCTTTTTGTAAAAACAAATGCTTAAACCTGTGAGCCTGCCGTTCCTTTCTATGTGTTAATCAGTTTCCTTCCATTTGAGCT >In-frame_ENST00000395892_ENST00000607016_TCGA-BF-AAP4-01A_CLIC1_chr6_31701343_-_NUDT3_chr6_34263462_length(amino acids)=147AA_start in transcript=192_stop in transcript=635 MVPDATMAEEQPQVELFVKAGSDGAKIGNCPFSQRLFMVLWLKGVTFNVTTVDTKRRTETVQKLCPGGQLPFLLYGTEVHTDTNKIEEFL -------------------------------------------------------------- |
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Fusion Gene PPI Analysis for CLIC1-NUDT3 |
Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in |
Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
Hgene | Hgene's interactors | Tgene | Tgene's interactors |
- Retained PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
- Lost PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
- Retained PPIs, but lost function due to frame-shift fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Related Drugs for CLIC1-NUDT3 |
Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.8 2021-05-08) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
Hgene | CLIC1 | O00299 | DB09130 | Copper | Small molecule | Approved|Investigational | |
Hgene | CLIC1 | O00299 | DB09130 | Copper | Small molecule | Approved|Investigational | |
Hgene | CLIC1 | O00299 | DB09130 | Copper | Small molecule | Approved|Investigational |
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Related Diseases for CLIC1-NUDT3 |
Diseases associated with fusion partners. (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Hgene | CLIC1 | C0006142 | Malignant neoplasm of breast | 1 | CTD_human |
Hgene | CLIC1 | C0019693 | HIV Infections | 1 | CTD_human |
Hgene | CLIC1 | C0022548 | Keloid | 1 | CTD_human |
Hgene | CLIC1 | C0023893 | Liver Cirrhosis, Experimental | 1 | CTD_human |
Hgene | CLIC1 | C0027627 | Neoplasm Metastasis | 1 | CTD_human |
Hgene | CLIC1 | C0029408 | Degenerative polyarthritis | 1 | CTD_human |
Hgene | CLIC1 | C0086743 | Osteoarthrosis Deformans | 1 | CTD_human |
Hgene | CLIC1 | C0279626 | Squamous cell carcinoma of esophagus | 1 | CTD_human |
Hgene | CLIC1 | C0678222 | Breast Carcinoma | 1 | CTD_human |
Hgene | CLIC1 | C1257931 | Mammary Neoplasms, Human | 1 | CTD_human |
Hgene | CLIC1 | C1458155 | Mammary Neoplasms | 1 | CTD_human |
Hgene | CLIC1 | C4505456 | HIV Coinfection | 1 | CTD_human |
Hgene | CLIC1 | C4704874 | Mammary Carcinoma, Human | 1 | CTD_human |