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Center for Computational Systems Medicine
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Fusion Gene Summary

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Fusion Gene ORF analysis

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Fusion Genomic Features

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Fusion Protein Features

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Fusion Gene Sequence

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Fusion Gene PPI analysis

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Related Drugs

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Related Diseases

Fusion gene:CLIC1-NUDT3 (FusionGDB2 ID:17137)

Fusion Gene Summary for CLIC1-NUDT3

check button Fusion gene summary
Fusion gene informationFusion gene name: CLIC1-NUDT3
Fusion gene ID: 17137
HgeneTgene
Gene symbol

CLIC1

NUDT3

Gene ID

1192

11165

Gene namechloride intracellular channel 1nudix hydrolase 3
SynonymsCL1C1|CLCNL1|G6|NCC27DIPP|DIPP-1|DIPP1
Cytomap

6p21.33

6p21.31

Type of geneprotein-codingprotein-coding
Descriptionchloride intracellular channel protein 1RNCC proteinchloride channel ABPhRNCCnuclear chloride ion channel 27nuclear chloride ion channel proteinp64CLCPregulatory nuclear chloride ion channel proteindiphosphoinositol polyphosphate phosphohydrolase 1diadenosine 5',5'''-P1,P6-hexaphosphate hydrolase 1nucleoside diphosphate-linked moiety X motif 3nudix (nucleoside diphosphate linked moiety X)-type motif 3nudix motif 3
Modification date2020031320200313
UniProtAcc

O00299

.
Ensembl transtripts involved in fusion geneENST00000375784, ENST00000375779, 
ENST00000375780, ENST00000395892, 
ENST00000457485, ENST00000423804, 
ENST00000447369, ENST00000447338, 
ENST00000422167, ENST00000438708, 
ENST00000431921, ENST00000415179, 
ENST00000418285, ENST00000423055, 
ENST00000442045, ENST00000435242, 
ENST00000400052, ENST00000383404, 
ENST00000383405, ENST00000400058, 
ENST00000456863, ENST00000434202, 
ENST00000420458, ENST00000433916, 
ENST00000425464, ENST00000423143, 
ENST00000438750, ENST00000451546, 
ENST00000607016, 
Fusion gene scores* DoF score5 X 5 X 4=10013 X 7 X 8=728
# samples 615
** MAII scorelog2(6/100*10)=-0.736965594166206
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
log2(15/728*10)=-2.27897594970282
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
Context

PubMed: CLIC1 [Title/Abstract] AND NUDT3 [Title/Abstract] AND fusion [Title/Abstract]

Most frequent breakpointCLIC1(31701343)-NUDT3(34263462), # samples:2
Anticipated loss of major functional domain due to fusion event.
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
HgeneCLIC1

GO:0006821

chloride transport

9139710

TgeneNUDT3

GO:0071544

diphosphoinositol polyphosphate catabolic process

10585413


check buttonFusion gene breakpoints across CLIC1 (5'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.

check buttonFusion gene breakpoints across NUDT3 (3'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.

check button Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0)
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
SourceDiseaseSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
ChimerDB4SKCMTCGA-BF-AAP4-01ACLIC1chr6

31701343

-NUDT3chr6

34263462

-
ChimerDB4SKCMTCGA-BF-AAP4-01ACLIC1chr6

31701343

-NUDT3chr6

34263462

-


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Fusion Gene ORF analysis for CLIC1-NUDT3

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
Frame-shiftENST00000375784ENST00000607016CLIC1chr6

31701343

-NUDT3chr6

34263462

-
Frame-shiftENST00000375779ENST00000607016CLIC1chr6

31701343

-NUDT3chr6

34263462

-
In-frameENST00000375780ENST00000607016CLIC1chr6

31701343

-NUDT3chr6

34263462

-
In-frameENST00000395892ENST00000607016CLIC1chr6

31701343

-NUDT3chr6

34263462

-
intron-3CDSENST00000457485ENST00000607016CLIC1chr6

31701343

-NUDT3chr6

34263462

-
intron-3CDSENST00000423804ENST00000607016CLIC1chr6

31701343

-NUDT3chr6

34263462

-
intron-3CDSENST00000447369ENST00000607016CLIC1chr6

31701343

-NUDT3chr6

34263462

-
intron-3CDSENST00000447338ENST00000607016CLIC1chr6

31701343

-NUDT3chr6

34263462

-
intron-3CDSENST00000422167ENST00000607016CLIC1chr6

31701343

-NUDT3chr6

34263462

-
intron-3CDSENST00000438708ENST00000607016CLIC1chr6

31701343

-NUDT3chr6

34263462

-
intron-3CDSENST00000431921ENST00000607016CLIC1chr6

31701343

-NUDT3chr6

34263462

-
intron-3CDSENST00000415179ENST00000607016CLIC1chr6

31701343

-NUDT3chr6

34263462

-
intron-3CDSENST00000418285ENST00000607016CLIC1chr6

31701343

-NUDT3chr6

34263462

-
intron-3CDSENST00000423055ENST00000607016CLIC1chr6

31701343

-NUDT3chr6

34263462

-
intron-3CDSENST00000442045ENST00000607016CLIC1chr6

31701343

-NUDT3chr6

34263462

-
intron-3CDSENST00000435242ENST00000607016CLIC1chr6

31701343

-NUDT3chr6

34263462

-
intron-3CDSENST00000400052ENST00000607016CLIC1chr6

31701343

-NUDT3chr6

34263462

-
intron-3CDSENST00000383404ENST00000607016CLIC1chr6

31701343

-NUDT3chr6

34263462

-
intron-3CDSENST00000383405ENST00000607016CLIC1chr6

31701343

-NUDT3chr6

34263462

-
intron-3CDSENST00000400058ENST00000607016CLIC1chr6

31701343

-NUDT3chr6

34263462

-
intron-3CDSENST00000456863ENST00000607016CLIC1chr6

31701343

-NUDT3chr6

34263462

-
intron-3CDSENST00000434202ENST00000607016CLIC1chr6

31701343

-NUDT3chr6

34263462

-
intron-3CDSENST00000420458ENST00000607016CLIC1chr6

31701343

-NUDT3chr6

34263462

-
intron-3CDSENST00000433916ENST00000607016CLIC1chr6

31701343

-NUDT3chr6

34263462

-
intron-3CDSENST00000425464ENST00000607016CLIC1chr6

31701343

-NUDT3chr6

34263462

-
intron-3CDSENST00000423143ENST00000607016CLIC1chr6

31701343

-NUDT3chr6

34263462

-
intron-3CDSENST00000438750ENST00000607016CLIC1chr6

31701343

-NUDT3chr6

34263462

-
intron-3CDSENST00000451546ENST00000607016CLIC1chr6

31701343

-NUDT3chr6

34263462

-

check buttonORFfinder result based on the fusion transcript sequence of in-frame fusion genes.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandSeq length
(transcript)
BP loci
(transcript)
Predicted start
(transcript)
Predicted stop
(transcript)
Seq length
(amino acids)
ENST00000375780CLIC1chr631701343-ENST00000607016NUDT3chr634263462-10338955910461149
ENST00000395892CLIC1chr631701343-ENST00000607016NUDT3chr634263462-9975592192635147

check buttonDeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandNo-coding scoreCoding score
ENST00000375780ENST00000607016CLIC1chr631701343-NUDT3chr634263462-0.0082174080.99178255
ENST00000395892ENST00000607016CLIC1chr631701343-NUDT3chr634263462-0.0080470460.99195296

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Fusion Genomic Features for CLIC1-NUDT3


check buttonFusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints.
HgeneHchrHbpHstrandTgeneTchrTbpTstrand1-pp (fusion gene breakpoint)

check buttonDistribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page.

check buttonDistribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page.

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Fusion Protein Features for CLIC1-NUDT3


check button Go to

FGviewer for the breakpoints of chr6:31701343-chr6:34263462

.
- FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels.
FGviewer

check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
CLIC1

O00299

.
FUNCTION: Can insert into membranes and form chloride ion channels. Channel activity depends on the pH. Membrane insertion seems to be redox-regulated and may occur only under oxydizing conditions. Involved in regulation of the cell cycle. {ECO:0000269|PubMed:10834939, ECO:0000269|PubMed:11195932, ECO:0000269|PubMed:11551966, ECO:0000269|PubMed:11940526, ECO:0000269|PubMed:11978800, ECO:0000269|PubMed:14613939, ECO:0000269|PubMed:9139710}.FUNCTION: Might normally function as a transcriptional repressor. EWS-fusion-proteins (EFPS) may play a role in the tumorigenic process. They may disturb gene expression by mimicking, or interfering with the normal function of CTD-POLII within the transcription initiation complex. They may also contribute to an aberrant activation of the fusion protein target genes.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page


* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
HgeneCLIC1chr6:31701343chr6:34263462ENST00000375779-572_90127.33333333333333242.0RegionNote=Required for insertion into the membrane
HgeneCLIC1chr6:31701343chr6:34263462ENST00000375780-572_90127.33333333333333242.0RegionNote=Required for insertion into the membrane
HgeneCLIC1chr6:31701343chr6:34263462ENST00000375784-462_90127.33333333333333242.0RegionNote=Required for insertion into the membrane
HgeneCLIC1chr6:31701343chr6:34263462ENST00000395892-682_90127.33333333333333242.0RegionNote=Required for insertion into the membrane
HgeneCLIC1chr6:31701343chr6:34263462ENST00000375779-5726_46127.33333333333333242.0TransmembraneHelical%3B Note%3DAfter insertion into the membrane
HgeneCLIC1chr6:31701343chr6:34263462ENST00000375780-5726_46127.33333333333333242.0TransmembraneHelical%3B Note%3DAfter insertion into the membrane
HgeneCLIC1chr6:31701343chr6:34263462ENST00000375784-4626_46127.33333333333333242.0TransmembraneHelical%3B Note%3DAfter insertion into the membrane
HgeneCLIC1chr6:31701343chr6:34263462ENST00000395892-6826_46127.33333333333333242.0TransmembraneHelical%3B Note%3DAfter insertion into the membrane
TgeneNUDT3chr6:31701343chr6:34263462ENST000006070161589_9170.0173.0RegionSubstrate binding

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
HgeneCLIC1chr6:31701343chr6:34263462ENST00000375779-5793_233127.33333333333333242.0DomainNote=GST C-terminal
HgeneCLIC1chr6:31701343chr6:34263462ENST00000375780-5793_233127.33333333333333242.0DomainNote=GST C-terminal
HgeneCLIC1chr6:31701343chr6:34263462ENST00000375784-4693_233127.33333333333333242.0DomainNote=GST C-terminal
HgeneCLIC1chr6:31701343chr6:34263462ENST00000383404-1793_2330242.0DomainNote=GST C-terminal
HgeneCLIC1chr6:31701343chr6:34263462ENST00000383405-1793_2330242.0DomainNote=GST C-terminal
HgeneCLIC1chr6:31701343chr6:34263462ENST00000395892-6893_233127.33333333333333242.0DomainNote=GST C-terminal
HgeneCLIC1chr6:31701343chr6:34263462ENST00000400052-1693_2330242.0DomainNote=GST C-terminal
HgeneCLIC1chr6:31701343chr6:34263462ENST00000400058-1893_2330242.0DomainNote=GST C-terminal
HgeneCLIC1chr6:31701343chr6:34263462ENST00000415179-1893_2330242.0DomainNote=GST C-terminal
HgeneCLIC1chr6:31701343chr6:34263462ENST00000418285-1693_2330242.0DomainNote=GST C-terminal
HgeneCLIC1chr6:31701343chr6:34263462ENST00000420458-1793_2330242.0DomainNote=GST C-terminal
HgeneCLIC1chr6:31701343chr6:34263462ENST00000422167-1693_2330242.0DomainNote=GST C-terminal
HgeneCLIC1chr6:31701343chr6:34263462ENST00000423055-1793_2330242.0DomainNote=GST C-terminal
HgeneCLIC1chr6:31701343chr6:34263462ENST00000423143-1793_2330242.0DomainNote=GST C-terminal
HgeneCLIC1chr6:31701343chr6:34263462ENST00000423804-1793_2330242.0DomainNote=GST C-terminal
HgeneCLIC1chr6:31701343chr6:34263462ENST00000425464-1693_2330242.0DomainNote=GST C-terminal
HgeneCLIC1chr6:31701343chr6:34263462ENST00000431921-1793_2330242.0DomainNote=GST C-terminal
HgeneCLIC1chr6:31701343chr6:34263462ENST00000433916-1893_2330242.0DomainNote=GST C-terminal
HgeneCLIC1chr6:31701343chr6:34263462ENST00000434202-1793_2330242.0DomainNote=GST C-terminal
HgeneCLIC1chr6:31701343chr6:34263462ENST00000435242-1893_2330242.0DomainNote=GST C-terminal
HgeneCLIC1chr6:31701343chr6:34263462ENST00000438708-1793_2330242.0DomainNote=GST C-terminal
HgeneCLIC1chr6:31701343chr6:34263462ENST00000438750-1793_2330242.0DomainNote=GST C-terminal
HgeneCLIC1chr6:31701343chr6:34263462ENST00000442045-1793_2330242.0DomainNote=GST C-terminal
HgeneCLIC1chr6:31701343chr6:34263462ENST00000447338-1893_2330242.0DomainNote=GST C-terminal
HgeneCLIC1chr6:31701343chr6:34263462ENST00000447369-1793_2330242.0DomainNote=GST C-terminal
HgeneCLIC1chr6:31701343chr6:34263462ENST00000451546-1893_2330242.0DomainNote=GST C-terminal
HgeneCLIC1chr6:31701343chr6:34263462ENST00000456863-1693_2330242.0DomainNote=GST C-terminal
HgeneCLIC1chr6:31701343chr6:34263462ENST00000457485-1693_2330242.0DomainNote=GST C-terminal
HgeneCLIC1chr6:31701343chr6:34263462ENST00000383404-172_900242.0RegionNote=Required for insertion into the membrane
HgeneCLIC1chr6:31701343chr6:34263462ENST00000383405-172_900242.0RegionNote=Required for insertion into the membrane
HgeneCLIC1chr6:31701343chr6:34263462ENST00000400052-162_900242.0RegionNote=Required for insertion into the membrane
HgeneCLIC1chr6:31701343chr6:34263462ENST00000400058-182_900242.0RegionNote=Required for insertion into the membrane
HgeneCLIC1chr6:31701343chr6:34263462ENST00000415179-182_900242.0RegionNote=Required for insertion into the membrane
HgeneCLIC1chr6:31701343chr6:34263462ENST00000418285-162_900242.0RegionNote=Required for insertion into the membrane
HgeneCLIC1chr6:31701343chr6:34263462ENST00000420458-172_900242.0RegionNote=Required for insertion into the membrane
HgeneCLIC1chr6:31701343chr6:34263462ENST00000422167-162_900242.0RegionNote=Required for insertion into the membrane
HgeneCLIC1chr6:31701343chr6:34263462ENST00000423055-172_900242.0RegionNote=Required for insertion into the membrane
HgeneCLIC1chr6:31701343chr6:34263462ENST00000423143-172_900242.0RegionNote=Required for insertion into the membrane
HgeneCLIC1chr6:31701343chr6:34263462ENST00000423804-172_900242.0RegionNote=Required for insertion into the membrane
HgeneCLIC1chr6:31701343chr6:34263462ENST00000425464-162_900242.0RegionNote=Required for insertion into the membrane
HgeneCLIC1chr6:31701343chr6:34263462ENST00000431921-172_900242.0RegionNote=Required for insertion into the membrane
HgeneCLIC1chr6:31701343chr6:34263462ENST00000433916-182_900242.0RegionNote=Required for insertion into the membrane
HgeneCLIC1chr6:31701343chr6:34263462ENST00000434202-172_900242.0RegionNote=Required for insertion into the membrane
HgeneCLIC1chr6:31701343chr6:34263462ENST00000435242-182_900242.0RegionNote=Required for insertion into the membrane
HgeneCLIC1chr6:31701343chr6:34263462ENST00000438708-172_900242.0RegionNote=Required for insertion into the membrane
HgeneCLIC1chr6:31701343chr6:34263462ENST00000438750-172_900242.0RegionNote=Required for insertion into the membrane
HgeneCLIC1chr6:31701343chr6:34263462ENST00000442045-172_900242.0RegionNote=Required for insertion into the membrane
HgeneCLIC1chr6:31701343chr6:34263462ENST00000447338-182_900242.0RegionNote=Required for insertion into the membrane
HgeneCLIC1chr6:31701343chr6:34263462ENST00000447369-172_900242.0RegionNote=Required for insertion into the membrane
HgeneCLIC1chr6:31701343chr6:34263462ENST00000451546-182_900242.0RegionNote=Required for insertion into the membrane
HgeneCLIC1chr6:31701343chr6:34263462ENST00000456863-162_900242.0RegionNote=Required for insertion into the membrane
HgeneCLIC1chr6:31701343chr6:34263462ENST00000457485-162_900242.0RegionNote=Required for insertion into the membrane
HgeneCLIC1chr6:31701343chr6:34263462ENST00000383404-1726_460242.0TransmembraneHelical%3B Note%3DAfter insertion into the membrane
HgeneCLIC1chr6:31701343chr6:34263462ENST00000383405-1726_460242.0TransmembraneHelical%3B Note%3DAfter insertion into the membrane
HgeneCLIC1chr6:31701343chr6:34263462ENST00000400052-1626_460242.0TransmembraneHelical%3B Note%3DAfter insertion into the membrane
HgeneCLIC1chr6:31701343chr6:34263462ENST00000400058-1826_460242.0TransmembraneHelical%3B Note%3DAfter insertion into the membrane
HgeneCLIC1chr6:31701343chr6:34263462ENST00000415179-1826_460242.0TransmembraneHelical%3B Note%3DAfter insertion into the membrane
HgeneCLIC1chr6:31701343chr6:34263462ENST00000418285-1626_460242.0TransmembraneHelical%3B Note%3DAfter insertion into the membrane
HgeneCLIC1chr6:31701343chr6:34263462ENST00000420458-1726_460242.0TransmembraneHelical%3B Note%3DAfter insertion into the membrane
HgeneCLIC1chr6:31701343chr6:34263462ENST00000422167-1626_460242.0TransmembraneHelical%3B Note%3DAfter insertion into the membrane
HgeneCLIC1chr6:31701343chr6:34263462ENST00000423055-1726_460242.0TransmembraneHelical%3B Note%3DAfter insertion into the membrane
HgeneCLIC1chr6:31701343chr6:34263462ENST00000423143-1726_460242.0TransmembraneHelical%3B Note%3DAfter insertion into the membrane
HgeneCLIC1chr6:31701343chr6:34263462ENST00000423804-1726_460242.0TransmembraneHelical%3B Note%3DAfter insertion into the membrane
HgeneCLIC1chr6:31701343chr6:34263462ENST00000425464-1626_460242.0TransmembraneHelical%3B Note%3DAfter insertion into the membrane
HgeneCLIC1chr6:31701343chr6:34263462ENST00000431921-1726_460242.0TransmembraneHelical%3B Note%3DAfter insertion into the membrane
HgeneCLIC1chr6:31701343chr6:34263462ENST00000433916-1826_460242.0TransmembraneHelical%3B Note%3DAfter insertion into the membrane
HgeneCLIC1chr6:31701343chr6:34263462ENST00000434202-1726_460242.0TransmembraneHelical%3B Note%3DAfter insertion into the membrane
HgeneCLIC1chr6:31701343chr6:34263462ENST00000435242-1826_460242.0TransmembraneHelical%3B Note%3DAfter insertion into the membrane
HgeneCLIC1chr6:31701343chr6:34263462ENST00000438708-1726_460242.0TransmembraneHelical%3B Note%3DAfter insertion into the membrane
HgeneCLIC1chr6:31701343chr6:34263462ENST00000438750-1726_460242.0TransmembraneHelical%3B Note%3DAfter insertion into the membrane
HgeneCLIC1chr6:31701343chr6:34263462ENST00000442045-1726_460242.0TransmembraneHelical%3B Note%3DAfter insertion into the membrane
HgeneCLIC1chr6:31701343chr6:34263462ENST00000447338-1826_460242.0TransmembraneHelical%3B Note%3DAfter insertion into the membrane
HgeneCLIC1chr6:31701343chr6:34263462ENST00000447369-1726_460242.0TransmembraneHelical%3B Note%3DAfter insertion into the membrane
HgeneCLIC1chr6:31701343chr6:34263462ENST00000451546-1826_460242.0TransmembraneHelical%3B Note%3DAfter insertion into the membrane
HgeneCLIC1chr6:31701343chr6:34263462ENST00000456863-1626_460242.0TransmembraneHelical%3B Note%3DAfter insertion into the membrane
HgeneCLIC1chr6:31701343chr6:34263462ENST00000457485-1626_460242.0TransmembraneHelical%3B Note%3DAfter insertion into the membrane
TgeneNUDT3chr6:31701343chr6:34263462ENST000006070161517_14270.0173.0DomainNudix hydrolase
TgeneNUDT3chr6:31701343chr6:34263462ENST000006070161551_7270.0173.0MotifNote=Nudix box
TgeneNUDT3chr6:31701343chr6:34263462ENST000006070161518_2070.0173.0RegionSubstrate binding
TgeneNUDT3chr6:31701343chr6:34263462ENST000006070161539_4170.0173.0RegionSubstrate binding


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Fusion Gene Sequence for CLIC1-NUDT3


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones.
>In-frame_ENST00000375780_ENST00000607016_TCGA-BF-AAP4-01A_CLIC1_chr6_31701343_-_NUDT3_chr6_34263462_length(transcript)=10338nt_BP=955nt
CCAAGTAGCTGGGATTACAGGTGCCCACCACCCCGCCTGGCAAATTTTTGTATTTTTAGTAGAGACAGGGTTTCACCATGTTGGCCAGTC
TGGTCTTGACTCCCTGACCTCAGGTGATCCACCCCCCTTGGCCTCCTAAAGTGTTGGGATTACAGGCGTGAGCCACCTCACCCGGCCCCT
AACTCTATTTCCTATGCCCAATCCCAAGTGTAGGCCACAAGGACTGCAAGTCCTAGTGCTGAGCTGGGCCCGGAGACAGTAGACTGCGGG
GGGCACAGGACCTACTGAGACACCAGTCTGGGCAGCTCAGGGAGTGCTGGCGTCACCCCTTCCCTAATCCCAGGCTGCATGGCTAACGGT
TCCTATCTGCAGTCCCAGCCTTCCACTTCCGAGTTCTTCTCTCAGACCACAGTCCCAGCAACCCAGAATTTGGATTGGAGTCTGGAAGAA
ATGCAGAATGATTAAACGACCACCTTTCCATTTGAAGTCCCCATCCCTGAATCTTCACGGGTGTGCCCAAGCTCCCCTCCCAGTTCCCCC
AGGGACGGCCACTTCCTGGTCCCCGACGCAACCATGGCTGAAGAACAACCGCAGGTCGAATTGTTCGTGAAGGCTGGCAGTGATGGGGCC
AAGATTGGGAACTGCCCATTCTCCCAGAGACTGTTCATGGTACTGTGGCTCAAGGGAGTCACCTTCAATGTTACCACCGTTGACACCAAA
AGGCGGACCGAGACAGTGCAGAAGCTGTGCCCAGGGGGGCAGCTCCCATTCCTGCTGTATGGCACTGAAGTGCACACAGACACCAACAAG
ATTGAGGAATTTCTGGAGGCAGTGCTGTGCCCTCCCAGGTACCCCAAGCTGGCAGCTCTGAACCCTGAGTCCAACACAGCTGGGCTGGAC
ATATTTGCCAAATTTTCTGCCTACATCAAGAATTCAAACCCAGCACTCAATGACAGCTGGAGTAAAAGGGACATTGGGAAGATTAGTTGG
AATTTTTGAGAACCAGGAGAGGAAGCACAGGACGTATGTCTATGTGCTCATTGTCACTGAAGTGCTGGAAGACTGGGAAGATTCAGTTAA
CATTGGAAGGAAGAGGGAATGGTTTAAAATAGAAGACGCCATAAAAGTGCTGCAGTATCACAAACCCGTGCAGGCATCATATTTTGAAAC
ATTGAGGCAAGGCTACTCAGCCAACAATGGCACCCCAGTCGTGGCCACCACATACTCGGTTTCTGCTCAGAGCTCGATGTCAGGCATCAG
ATGACTGAAGACTTCCTGTAAGAGAAATGGAAATTGGAAACTAGACTGAAGTGCAAATCTTCCCTCTCACCCTGGCTCTTTCCACTTCTC
ACAGGCCTCCTCTTTCAAATAAGGCATGGTGGGCAGCAAAGAAAGGGTGTATTGATAATGTTGCTGTTTGGTGTTAAGTGATGGGGCTTT
TTCTTCTGTTTTTATTGAGGGTGGGGGTTGGGTGTGTAATTTGTAAGTACTTTTGTGCATGATCTGTCCCTCCCTCTTCCCACCCCTGCA
GTCCTCTGAAGAGAGGCCAACAGCCTTCCCCTGCCTTGGATTCTGAAGTGTTCCTGTTTGTCTTATCCTGGCCCTGGCCAGACGTTTTCT
TTGATTTTTAATTTTTTTTTTTTATTAAAAGATACCAGTATGAGATGAAAACTTCCAATAATTTGTCCTATAATGTGCTGTACAGTTCAG
TAGAGTGGTCACTTTCACTGCAGTATACATTTATCTACACATTATATATCGGACATATAATATGTAAATAAATGACTTCTAGAAAGAGAA
ATTTGTTTAATTTTTCAAGGTTTTTTTCTCTTTTAATTTGGGCATTTCTAGAATTGAGAGCCTCACAATTAACATACCTTTTTGTTTTCG
ATGCTAGTGGCTGGGCAGGTTGCCCTGTCCTTTCTCTATTTCCCAGTCATTGACTGTAGATATGGGAAGAGTTTAGCTACCTTCATAGTG
CTCCCAGGACTCATGGCCTTTCCTTCTTTAAGCTGTATTTCCCTGCCCAGAAAGAAACAGGAAGAAACCTTTTTTTATTTTTTTATTTTT
TTTTAACCAAGCAAGGAGCAAATGGCCTCAGCCCAGATCTGTAAAAACAATGATAGAAATTGAATTCTGCCCCACATGTTGACAGTAGAG
TTGGAACTGGATTCTTGGGATTACTTATCTAAAAAACTGGAGCATCAGGTCCATTTCTGTTCTGCTGGTTTGGAATCTTTTCCGTAATGC
TATTTATTGCCAACAATGGCCTCTCTTTGTGTCCATATATGCCTTACACCGTGCTGACCTGGGTATCATCCATGTGCTCTGAAGCATCCA
ACTTTACTTTGCAGGTGCATCAATGTAGTCCTGTCCCTGAACTGAGTAACCGTGTTCCTGAAAAGTACACTAGGGAAATTCACCTGCTTG
CTTGTCTTTGTATTGGCATGGCACTTGTGATTGCACCATGGAGCATGCTCAGAGCTATTAAATTGGTCTCCCATCTCCCACCAGGATATG
AAAGGTCCATATGGGAGGCCACGTAATCACTTATTACAGTGGTTACATAATACACTGGCTCACTGCAGACTCTCTTGTTTTTTGATACAG
TTTCGTGCTGGCTTCATTTGCCAATTGTGTTGTTTAGTTCGGAAGTAAGAGGGTCTTGAGATTGAGGGGTAGGGAGGGCTACACTGACTG
ATCCGTGGCTTAAGACAGGAGATTATCTCTGTACTCCAGTGGCATCTCCTTAGCCAAGATGTGAAATTAAAATCATAGTTCGCCTCATTT
AAAAATTCTAATAAAGCACTCAAACTTTGAAAAGCTTTTACTTTTCCCTCCTACTAAAAGAAATGTATGTACCTCATAGCCCTGTGTCAT
TTAGTGTTCAGCACTTTTGGGAACATCAGTTGGTGAACTTTAAATTTTGCTGTCTACTCACTGGGCACGGTGGCTCACACCTGTAATCCC
AGCACTTTGGGAGGCTGAGGCAGGTGGATCACCTGAGGTCAGGAGTTTGAGACCAGCCTGACCAACATGGTGAAACCCCGTCTCTACTAA
AAATGCAGAAATTAGGTGGGCGCCTGTAATCCCAGCTACTTGGGAGGCTGAGGCGAGATAATCGCTTGAACCTGGGAGGCAGAGGTTGCA
GTGAGCCGAGATTGCACCACTGTCGTCCAGCCTGGGTGATAAGAGTGAAACTCCATCTCAAAAAAAAAAAAAAAAAATTTTTTTTTTTTT
TTTTGCTATATACTCTTAGTTTACATCCTCTCCCCCAATCTTCACACACAGAGCCAAAGAGCAGTTATATTCTTGGGATACCATGATACC
TCTGGGAAAGGAATTATATTCCCAAGGAGAGGTCCCATTGGATAAGAACAATACCATGGGACTTGAGTCTGAATGCCAACTTACTATTCA
CACATCCTTCTTAAAAACGAACACACTGTTTCTTTTCCTGACCTAGAGCATTCTAAAGTTCTGTTCAAATAAATAAAGGGCAAAATAAAG
TAGATTTAACCAAGTGCCAGGTGGAATTCAAAAAACACATTCTTCCAGATAAATTCTACCTTTATGGTATGGATTTGAAAGTACTTTGCA
GGAAAACAGTCAGTACTCTTTAAAAAGGGACTGCAGGGCTGGGTGTAGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCAAGGCA
GGTGGGTCACTTGAGGCCAGGAGTTTGAGACCAGCCTGACCAACATGGCAAAACCCCATCTCTACTAAAATACAAAAATTAGCTGGGCAT
GATGGTGCACTCCTGTAATCCCAGCTACTTGGTAGGCTGAAGCATGAGAATTGCTTAAACCTGGGAGGCAGAGGTTGCAGTAAGCCAAGA
TCATGCCACTGCACTCCAGCCTGGGCAACAGAGTAAGACTCTGTCTTAATAAATAAATAAGAAAATAAAACGGAACTGCAGTGCTAACAG
TAATTTATACATTTTTAAATGTTCTGAGTATGTTTTGACTGGGCTAGTGTAACAATATACTACCCTGAAAGTGCAGTTTTGATTGTTGTT
GGTGTCTTTGGGTCAGGAAAGTGAACTGTGCCAAGAAGTATTTTTCAGTGACATGAATGGATTCCTGTTAATGCAATTGACTGAGAGATT
GTGCTTACGCTTTCTTAACTGACAAAAAGAGGCTTTGTCCAACATCAGAATTGTTGAAACTGGTGCTGTTTTCTGTTGCACTGGGATTCT
GATGATCTGGGATTTTCCCTCCTTGGCACAGTAAACACCATGACTGTCTTTATTGAGAATGTCGTCACAGTCCTTTAGTGATAGATTAGT
TAGACCCATGGTTGCAATACCTTTATCTCCCCAAAGAAAATAATCAAAAGAAAGCACAAAAGCTACCCTGTTTGCAGAATATTTCACTGA
CATTGATTTGTCATTAATTCTACCAGAGCTGACCTCATTCAGGCTTGATAGAAACAGGTTCCTATGTTTAGGGCAGATCCCTAGCCTCTC
GCTCACAGTGAGTCTGCATGTCCTAGATTCTGGTTATTGCTGGAGCATCCATTAAAGTCTACCAAACTCAGGACAGAAGAAGATAGCAGT
GGATTTGTAAAAATTTTTAGTTTATAAATTACAGTCATTGGGGAAACACTAGTAAGGTCATGTGATCTTTTGGACCAGGATTTTCTCTCT
GTCTTCTCTCTGGGTGTGTGTGTGTGTATGTACAGAAGGGCTACCAGGAAGTGTCAACCATGTTAGATTTTCTGTAGTCTTCCAGAAACA
GTGCAGCCCATACAACAGGAATCTTAATTTTCCTCACAGCAAATATAACAGGATGGAACAGTTAGTGTTTTGTTTTCACAAGTGTCCACC
ACTCCATCTGCCCTGCATGGAGAGGGCTCTCTCACTGCTAGATCTAGGCTGAGCCATCTGGAAGGATCAAAGGGTGTGGGAGTATCACCC
CCTCTCAGGCTGCAGAAGGTCTCGAGGGTGGCGTCACAGCAGGATTTCCGCCTTCTGCATTGCACTGCACAGCCCCATGGAACATGAGGC
ACTTGAGGCCTTGCTTCTTGGAGCCTCTGGGGAGCAGAGTAGGTCACTGCCCTCTGGGAGTGTTTTGCAGTAGTTTTGTAAATGTGTTGC
TACATAGTCAAGTTCCTTTGTGGCAAAGAAATATTTTGTTTTGATATTAGGAGCCAGCCCATGTAATGCCTCTCAGGCTTGCTTGCTTAG
AAGAAAAAAGTCACCCTTTGTGGTTTTTAAGAAAAAAATTCTGTGCAGATCTGTTCCTCCTCCTGCTCCTTCCCTTTTCTCTACATACAG
TGCTCATTGGAGGCTCCTGCTAAACCTTCTTAACCAGAGAAATAATAGGTATTTGTTAGACCTGAGTGTACATTTCACATGTTATCCTTC
ACATATTTCTCATTTTCATCTAGTACTTTCTTAATGCCTTTGTTGGAGTCCGCATCCTCATCTTTAAAAAAAAAAAAAAAAAAACAGCTT
AGCCTAAGCCACATTCACTTTTTTTAGTTCACAAAAAGGATTTAATAGCCACAATGTGATTTTTGCCACAACTGTGTGATTTTAATATTC
TCTAATATCAAGGGCGGATTTAGAATTGCAGGAAATACCTGGAGAAATCACAGTGGAATGAATTTTTGCTTTAAGAGAAATGAGAGTTGG
CTGTCTCTGTAATTGATAATACAGCTTCATCCTAGTCCCATCTGCATTTCAGAAAATAACCCTCATCTTTACAAAACACAGGACACTTGT
GGGACAGTTAACTCAAGCAGCTATGGGGAGGGAGGAGATTATTGAATGGTGATTAAATAATGCAAATGGCTCTTCTGTTTCTTAAAGACT
GTGGAAGAGGTCAGACTGCCCAGTTGAGGTGGGCAGTTCATACTGCTCAGTTGAGGTGGCAGTCATTTATTCTGAGTCCTGTTGGATAGA
GCCTATCTCCTCAAGGCTACAGAGGCTTCCAGGATATGGAGCTGTGCATGTTAATGGCTCAGCCTTGCCTCCATCAGGGCACCTGCCTAA
CTTGGAGCAAGTGGGAGAGCACCCTAGAGTCATCCTCTGTGCTGTTTCGTGAGTTTTGCAGCGGAGACTTCACCATCCGGAGGAGCTGTG
TTTCTGTGTCACTTGGGATATCACCTAAAAATGAAACATTTGATATTTTAAGGTATAAAAAAAAAGTAAATTGGGGAACATTGGCTGCAG
TCCCTAAAAGATACTGTTGTCTGTGCATCAGGTTAGCTTGAGGTCACCACAGGTCCTGGGAGCCCAGAGAGTTTAGGCATACTCTCCTTT
GGAGGCCAGCAGCCTTTCACAAACCCTGCCTCTAAAAGGGCGGTTTCACATTTGACCATGTTTTTGCATTAGCCTCAGAAACTCTTGTCT
TTAGCTGATAACCTTTGAGGGATGTGAGAAGCCTAGTTGGAGCATCTGAGAAAATGATACCTCTCACCTTCAAATTAATCAAATAGTTTG
TCCTTCTAGTCCCCTTATAAATTAATAAATGGAGGGCTGGTCATGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGG
TGGATCACAAGGTCAGGAGTTCAAGACCAGCCTGACCAATATGGTGAAACCCCATCTCTACTAAAAATACAAAAATTAGCCAGGTGTAGT
GGCACGCTCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATCGCTTGAACCCAGGAGGTGGATGTTGCAGTGAGCCGAGATCC
CGCCACTGCACTGCAGCCTAGGCGACAGAGCAAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAGAAAAGGGAAGGGAATCCCATTTTGT
GATGATTTGGGCACACTACTTGAGCTGAGGCTAGCAGTCACATGATTTTGGCTGTCTCTGACCTGAAGCTTTTGAAGTAAGGTTATGTCT
CTTCCCTGAAGCTTTGTTTATAGTGGTAATTTGGTGAGTTTGAGCTTTGAGCTTGTCTTAGAAAATAAGACTGTCCACCTGGGGAGGGGA
GCTTATAGGGAACCCGTGTTAACTCAGAATGCTGAAGAAAGTGCTTTTAGCCAACAAAAGTAAGATTACTATCTAGAAGGTGGAAAGAAG
TCATTGCTTCTGTTCCTCCAGCAGTCAGTTGACTCTAGGTTTCCTTTGGTTTATATCCCCAGTTCTTAATACTAAAACTTATTTGACTTC
CTATCAGGAAGCACACAAAAAAAGCGTCATTTAAAACCCTGGATATAGGCTTTAAAGGATACAAAAACAGCAGCATTGTCGTTTTGCCAG
GTTCATCACCATTTTGATGTGCTACCCATCCTTCCACCCTCCCTTTCCTGCCCCCAAGCCTCCCAGCCAGGCCAGATGTGAAGATTCTAT
TAATCACTGTTTCAGAGAACATTAATTCTTGTATAGAATAATTATCTACTAAATTGCTTATTATCTGTGACTACCTTGCAGAGAACATCT
CAACAGTGCAGTAAAATAGCTCTCCTAGACTTGAGCTTCCAGCCAGGCATTTAGATCACTCTTAAGCCTTTGTGGAATTCTGAGGAAAAA
AAGCAAGATGCCTCAATGCCAATGCTGGGCCATAAGATTCTACTCCCCTCCCTGTAGGGTGGGGCGCGTGGCTCAGCTTTGGAAAATCAT
TTTGCCAGTAATATTGCCTGTGAATCCCTTTAAGAAGTCGTCCTGATCTGAGCCTGTCTTTCTGAGCACTTTGGTGCTGAATTGAAAATG
GTAAGCTAAAGCAGTGACAGATCCACGTAGCCTCTTTAACCTCTTTATTATCTTGCCAAAAAAAAAGTTTCTCAGGTTAAACCTTTGTCT
TTAACCTCCCTTTGTTGTGGAGAAAATGTGTCACTAATCAGTGGTCCAAGGGATATCTAGCTTTGGTTACTCAGTTCCTGCAGCATAACA
GATATGACTTATGCCAGGGAAGGTAGAGGCTGATTATGGAGACACCCAGGAACAGGAATAAGAAGGGATAGGTCTGCTCCACGTAGAACC
TCCCCAGATCGGAAGTTAAGTCTTGGAGAGTTTCCAAAGTGCTGAAGTAAAAAGGAGACTTGGAGGGCCTTTGCTTAATGAGCAAGAGGC
TTGTGTCCTCCCAAGAACATGAGGGAGTTCAGAAGGGAGCTATAGCTCACAGACAGAAACCTGCCCGCTCACCCCATCCCTCGTGACTGG
GAGCATGTTTGCTCAGAATTTTCTAAGAGGACTCTCCCTTCAAAAATCCAATTTGCTCCCAGAATGTTGTTTAGCCTCTGAGAATCTCAC
TCTTTCATTTCCATCTGTGAATGGACATAGATGTGTTGCTCAGGGATCAGAAACATCAGAGTCCAGGGCCCAGTGGCATGGTGTTGCATT
AGTAGTTAGAAAAGTAATTGGTCAGCTCTACTGTAAAAGAAATAAGTATGTAGTACAGTTTTGTAAATGTCAGGTCTGTTCTATTGTTTT
GTGATCTGAAGACTGTCAAACTGGTTGATAATCAAAGAAAAGGTTGGTGGTTAGAATAAGTAAAATTTCAGTTAGAAAGATATAGCTTAC
CAGTTTTCCATGTGCTTAAGGAAGTCAAGAATATTTCAGGTTGTTGAGAACTGTTGTAAAATGGAATTGAAGCTAGTGTCTCTCACCTTC
TTAGGTGTATCAGAGAGAGGAAGTGGAAGGCCAGTAGTAGCATCTTCATACTTACTTTTGCCAGCCCAGCCTCCATTTCAAAGACTTTGT
CTTCCATCCTATCCAATGACATGGTCAGGGATGGGCTCTGAGGAGGCAGTGAGGCCCCACCTTGGTTTGCTCCACTGTGGTGTGTAGTCT
CCAAACAGCTTAAGGGTTTTTAAGTTTTCTCACGATTACCTCCACTCCACTCATCTACTATCAGCATCAGAAAGGTTAACATCCCTGGGA
CCATTCTACTTATAAAAGAGATGAACTAGTGTGCTTTCTCCCCTTTTCCAGGTGTGCCATCCATATACAATCTCCTCTTGGCCAAGTTCA
ACAAATGTTTCCAGGGAACCCCGTGGGTTGAGGCAAAGTAGCCAAGATGTATTGAGTTAAGTTTTTCTAGAGGACAAAAGTATTTCTTGT
CCCTTTTCCCTCATGCTCATATGTTTTAGCTGAGGCGTAAATGGCCAAGTTGAGTAATATCTGTGGAACTGAGACAGAGAGCCAGGGACC
CATGTACCCAGGGACCAGTCCCCTGGGGAATCACACAGTGGCTCAGACTAGACTGCTCTATCCCACCAGAACTCTGCTGCTGTTCATTTC
CATCAGGACCACCCAGGAAAGCAAATAAGTTAGCCTTCTCATCATTAGGTCACCTAATCTCTTGGGTTGCAGGATGAGAGCATATATAGA
TCTCCTGTTTAGAGAGTGTGTTCATAATTGTAGAAAGGGATAGAAAATGGAATAACCAAGAGGCTGTGTCATTTTTTAAGAGGATGGCAA
GGATGACCTCAAATGAGCTCAACAAAACTGGGAATCCAAGGAATGGTGCTTGTAGGGAAAGAGAGGTCAGTTGTGGTCCTTAAACCTCTT
GGCACCTTGTGCGGGTTATAAAACAAGGAGCTGGAGTAAAATTGCCCTTACCCCCAATCCAAATGCTGTCCAGGATTTAGGAGCTACCCA
ACCTGTGGTTATATGGTGTTGGTTTCCATTTTTTGTTTGTTTGCTTGTTTCCAAAATAGCCTTGCTTGGTACTGCATGGAAAGTTCAAGC
TTTTCTTCTTGCCCGCTCAGGGCTGGCCTCTTCCCCGTGTCTTCACAGCGTCCCTAAGGAAGATTTTTGCAGCACTCTCTGGAGCTGAGG
GGAGTGAAATTTGGTCCAGAGAAGGCGGAAGGAAATAGTTTTCCTGTTTCCTTTTCTCGAGGTGGATGTCCTCAGGCTTCCTTCACACCT
CCTTCTCATGGGTGCGGCTGGCAGTACAGTCAGGCTGTGGAGGAGGGCTGAGAAGAAAGGGGCACTGGTCCAGCCCCAGGTTTGGTCTGA
GACAGGTACACAGCAGATACCATCCCACCTTCCTCTCTAAAGAACAGGCCAGCCACACATATAACCCTTTCCCTACTTTACTAATGTATC
CCTTATGTGGTACCAGCAATGGAGGACAGGCAGACTTACCCCCTGCCATCTAGAGAGAATGTTGTTATTACCCGTAAAACTTGACCACCC
CCATATCCCACTCCTTTTTGTAAAAACAAATGCTTAAACCTGTGAGCCTGCCGTTCCTTTCTATGTGTTAATCAGTTTCCTTCCATTTGA

>In-frame_ENST00000375780_ENST00000607016_TCGA-BF-AAP4-01A_CLIC1_chr6_31701343_-_NUDT3_chr6_34263462_length(amino acids)=149AA_start in transcript=910_stop in transcript=461
MANMSSPAVLDSGFRAASLGYLGGHSTASRNSSILLVSVCTSVPYSRNGSCPPGHSFCTVSVRLLVSTVVTLKVTPLSHSTMNSLWENGQ

--------------------------------------------------------------
>In-frame_ENST00000395892_ENST00000607016_TCGA-BF-AAP4-01A_CLIC1_chr6_31701343_-_NUDT3_chr6_34263462_length(transcript)=9975nt_BP=592nt
GGATTTGATTGGCGCAGTGGGAAGCCCGCGAGAAGAGGTGGAAGCATTCGAATTACATCAAATTCTGGCAGAGAGAAGTAGTTCTGATCA
GAACACTCACACCCCTACTGGGACATGCCCATACCCCTTCGCACTTCTACACACCCCTGAAGACAGAGAGCCCCTCCCAGTTCCCCCAGG
GACGGCCACTTCCTGGTCCCCGACGCAACCATGGCTGAAGAACAACCGCAGGTCGAATTGTTCGTGAAGGCTGGCAGTGATGGGGCCAAG
ATTGGGAACTGCCCATTCTCCCAGAGACTGTTCATGGTACTGTGGCTCAAGGGAGTCACCTTCAATGTTACCACCGTTGACACCAAAAGG
CGGACCGAGACAGTGCAGAAGCTGTGCCCAGGGGGGCAGCTCCCATTCCTGCTGTATGGCACTGAAGTGCACACAGACACCAACAAGATT
GAGGAATTTCTGGAGGCAGTGCTGTGCCCTCCCAGGTACCCCAAGCTGGCAGCTCTGAACCCTGAGTCCAACACAGCTGGGCTGGACATA
TTTGCCAAATTTTCTGCCTACATCAAGAATTCAAACCCAGCACTCAATGACAGCTGGAGTAAAAGGGACATTGGGAAGATTAGTTGGAAT
TTTTGAGAACCAGGAGAGGAAGCACAGGACGTATGTCTATGTGCTCATTGTCACTGAAGTGCTGGAAGACTGGGAAGATTCAGTTAACAT
TGGAAGGAAGAGGGAATGGTTTAAAATAGAAGACGCCATAAAAGTGCTGCAGTATCACAAACCCGTGCAGGCATCATATTTTGAAACATT
GAGGCAAGGCTACTCAGCCAACAATGGCACCCCAGTCGTGGCCACCACATACTCGGTTTCTGCTCAGAGCTCGATGTCAGGCATCAGATG
ACTGAAGACTTCCTGTAAGAGAAATGGAAATTGGAAACTAGACTGAAGTGCAAATCTTCCCTCTCACCCTGGCTCTTTCCACTTCTCACA
GGCCTCCTCTTTCAAATAAGGCATGGTGGGCAGCAAAGAAAGGGTGTATTGATAATGTTGCTGTTTGGTGTTAAGTGATGGGGCTTTTTC
TTCTGTTTTTATTGAGGGTGGGGGTTGGGTGTGTAATTTGTAAGTACTTTTGTGCATGATCTGTCCCTCCCTCTTCCCACCCCTGCAGTC
CTCTGAAGAGAGGCCAACAGCCTTCCCCTGCCTTGGATTCTGAAGTGTTCCTGTTTGTCTTATCCTGGCCCTGGCCAGACGTTTTCTTTG
ATTTTTAATTTTTTTTTTTTATTAAAAGATACCAGTATGAGATGAAAACTTCCAATAATTTGTCCTATAATGTGCTGTACAGTTCAGTAG
AGTGGTCACTTTCACTGCAGTATACATTTATCTACACATTATATATCGGACATATAATATGTAAATAAATGACTTCTAGAAAGAGAAATT
TGTTTAATTTTTCAAGGTTTTTTTCTCTTTTAATTTGGGCATTTCTAGAATTGAGAGCCTCACAATTAACATACCTTTTTGTTTTCGATG
CTAGTGGCTGGGCAGGTTGCCCTGTCCTTTCTCTATTTCCCAGTCATTGACTGTAGATATGGGAAGAGTTTAGCTACCTTCATAGTGCTC
CCAGGACTCATGGCCTTTCCTTCTTTAAGCTGTATTTCCCTGCCCAGAAAGAAACAGGAAGAAACCTTTTTTTATTTTTTTATTTTTTTT
TAACCAAGCAAGGAGCAAATGGCCTCAGCCCAGATCTGTAAAAACAATGATAGAAATTGAATTCTGCCCCACATGTTGACAGTAGAGTTG
GAACTGGATTCTTGGGATTACTTATCTAAAAAACTGGAGCATCAGGTCCATTTCTGTTCTGCTGGTTTGGAATCTTTTCCGTAATGCTAT
TTATTGCCAACAATGGCCTCTCTTTGTGTCCATATATGCCTTACACCGTGCTGACCTGGGTATCATCCATGTGCTCTGAAGCATCCAACT
TTACTTTGCAGGTGCATCAATGTAGTCCTGTCCCTGAACTGAGTAACCGTGTTCCTGAAAAGTACACTAGGGAAATTCACCTGCTTGCTT
GTCTTTGTATTGGCATGGCACTTGTGATTGCACCATGGAGCATGCTCAGAGCTATTAAATTGGTCTCCCATCTCCCACCAGGATATGAAA
GGTCCATATGGGAGGCCACGTAATCACTTATTACAGTGGTTACATAATACACTGGCTCACTGCAGACTCTCTTGTTTTTTGATACAGTTT
CGTGCTGGCTTCATTTGCCAATTGTGTTGTTTAGTTCGGAAGTAAGAGGGTCTTGAGATTGAGGGGTAGGGAGGGCTACACTGACTGATC
CGTGGCTTAAGACAGGAGATTATCTCTGTACTCCAGTGGCATCTCCTTAGCCAAGATGTGAAATTAAAATCATAGTTCGCCTCATTTAAA
AATTCTAATAAAGCACTCAAACTTTGAAAAGCTTTTACTTTTCCCTCCTACTAAAAGAAATGTATGTACCTCATAGCCCTGTGTCATTTA
GTGTTCAGCACTTTTGGGAACATCAGTTGGTGAACTTTAAATTTTGCTGTCTACTCACTGGGCACGGTGGCTCACACCTGTAATCCCAGC
ACTTTGGGAGGCTGAGGCAGGTGGATCACCTGAGGTCAGGAGTTTGAGACCAGCCTGACCAACATGGTGAAACCCCGTCTCTACTAAAAA
TGCAGAAATTAGGTGGGCGCCTGTAATCCCAGCTACTTGGGAGGCTGAGGCGAGATAATCGCTTGAACCTGGGAGGCAGAGGTTGCAGTG
AGCCGAGATTGCACCACTGTCGTCCAGCCTGGGTGATAAGAGTGAAACTCCATCTCAAAAAAAAAAAAAAAAAATTTTTTTTTTTTTTTT
TGCTATATACTCTTAGTTTACATCCTCTCCCCCAATCTTCACACACAGAGCCAAAGAGCAGTTATATTCTTGGGATACCATGATACCTCT
GGGAAAGGAATTATATTCCCAAGGAGAGGTCCCATTGGATAAGAACAATACCATGGGACTTGAGTCTGAATGCCAACTTACTATTCACAC
ATCCTTCTTAAAAACGAACACACTGTTTCTTTTCCTGACCTAGAGCATTCTAAAGTTCTGTTCAAATAAATAAAGGGCAAAATAAAGTAG
ATTTAACCAAGTGCCAGGTGGAATTCAAAAAACACATTCTTCCAGATAAATTCTACCTTTATGGTATGGATTTGAAAGTACTTTGCAGGA
AAACAGTCAGTACTCTTTAAAAAGGGACTGCAGGGCTGGGTGTAGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCAAGGCAGGT
GGGTCACTTGAGGCCAGGAGTTTGAGACCAGCCTGACCAACATGGCAAAACCCCATCTCTACTAAAATACAAAAATTAGCTGGGCATGAT
GGTGCACTCCTGTAATCCCAGCTACTTGGTAGGCTGAAGCATGAGAATTGCTTAAACCTGGGAGGCAGAGGTTGCAGTAAGCCAAGATCA
TGCCACTGCACTCCAGCCTGGGCAACAGAGTAAGACTCTGTCTTAATAAATAAATAAGAAAATAAAACGGAACTGCAGTGCTAACAGTAA
TTTATACATTTTTAAATGTTCTGAGTATGTTTTGACTGGGCTAGTGTAACAATATACTACCCTGAAAGTGCAGTTTTGATTGTTGTTGGT
GTCTTTGGGTCAGGAAAGTGAACTGTGCCAAGAAGTATTTTTCAGTGACATGAATGGATTCCTGTTAATGCAATTGACTGAGAGATTGTG
CTTACGCTTTCTTAACTGACAAAAAGAGGCTTTGTCCAACATCAGAATTGTTGAAACTGGTGCTGTTTTCTGTTGCACTGGGATTCTGAT
GATCTGGGATTTTCCCTCCTTGGCACAGTAAACACCATGACTGTCTTTATTGAGAATGTCGTCACAGTCCTTTAGTGATAGATTAGTTAG
ACCCATGGTTGCAATACCTTTATCTCCCCAAAGAAAATAATCAAAAGAAAGCACAAAAGCTACCCTGTTTGCAGAATATTTCACTGACAT
TGATTTGTCATTAATTCTACCAGAGCTGACCTCATTCAGGCTTGATAGAAACAGGTTCCTATGTTTAGGGCAGATCCCTAGCCTCTCGCT
CACAGTGAGTCTGCATGTCCTAGATTCTGGTTATTGCTGGAGCATCCATTAAAGTCTACCAAACTCAGGACAGAAGAAGATAGCAGTGGA
TTTGTAAAAATTTTTAGTTTATAAATTACAGTCATTGGGGAAACACTAGTAAGGTCATGTGATCTTTTGGACCAGGATTTTCTCTCTGTC
TTCTCTCTGGGTGTGTGTGTGTGTATGTACAGAAGGGCTACCAGGAAGTGTCAACCATGTTAGATTTTCTGTAGTCTTCCAGAAACAGTG
CAGCCCATACAACAGGAATCTTAATTTTCCTCACAGCAAATATAACAGGATGGAACAGTTAGTGTTTTGTTTTCACAAGTGTCCACCACT
CCATCTGCCCTGCATGGAGAGGGCTCTCTCACTGCTAGATCTAGGCTGAGCCATCTGGAAGGATCAAAGGGTGTGGGAGTATCACCCCCT
CTCAGGCTGCAGAAGGTCTCGAGGGTGGCGTCACAGCAGGATTTCCGCCTTCTGCATTGCACTGCACAGCCCCATGGAACATGAGGCACT
TGAGGCCTTGCTTCTTGGAGCCTCTGGGGAGCAGAGTAGGTCACTGCCCTCTGGGAGTGTTTTGCAGTAGTTTTGTAAATGTGTTGCTAC
ATAGTCAAGTTCCTTTGTGGCAAAGAAATATTTTGTTTTGATATTAGGAGCCAGCCCATGTAATGCCTCTCAGGCTTGCTTGCTTAGAAG
AAAAAAGTCACCCTTTGTGGTTTTTAAGAAAAAAATTCTGTGCAGATCTGTTCCTCCTCCTGCTCCTTCCCTTTTCTCTACATACAGTGC
TCATTGGAGGCTCCTGCTAAACCTTCTTAACCAGAGAAATAATAGGTATTTGTTAGACCTGAGTGTACATTTCACATGTTATCCTTCACA
TATTTCTCATTTTCATCTAGTACTTTCTTAATGCCTTTGTTGGAGTCCGCATCCTCATCTTTAAAAAAAAAAAAAAAAAAACAGCTTAGC
CTAAGCCACATTCACTTTTTTTAGTTCACAAAAAGGATTTAATAGCCACAATGTGATTTTTGCCACAACTGTGTGATTTTAATATTCTCT
AATATCAAGGGCGGATTTAGAATTGCAGGAAATACCTGGAGAAATCACAGTGGAATGAATTTTTGCTTTAAGAGAAATGAGAGTTGGCTG
TCTCTGTAATTGATAATACAGCTTCATCCTAGTCCCATCTGCATTTCAGAAAATAACCCTCATCTTTACAAAACACAGGACACTTGTGGG
ACAGTTAACTCAAGCAGCTATGGGGAGGGAGGAGATTATTGAATGGTGATTAAATAATGCAAATGGCTCTTCTGTTTCTTAAAGACTGTG
GAAGAGGTCAGACTGCCCAGTTGAGGTGGGCAGTTCATACTGCTCAGTTGAGGTGGCAGTCATTTATTCTGAGTCCTGTTGGATAGAGCC
TATCTCCTCAAGGCTACAGAGGCTTCCAGGATATGGAGCTGTGCATGTTAATGGCTCAGCCTTGCCTCCATCAGGGCACCTGCCTAACTT
GGAGCAAGTGGGAGAGCACCCTAGAGTCATCCTCTGTGCTGTTTCGTGAGTTTTGCAGCGGAGACTTCACCATCCGGAGGAGCTGTGTTT
CTGTGTCACTTGGGATATCACCTAAAAATGAAACATTTGATATTTTAAGGTATAAAAAAAAAGTAAATTGGGGAACATTGGCTGCAGTCC
CTAAAAGATACTGTTGTCTGTGCATCAGGTTAGCTTGAGGTCACCACAGGTCCTGGGAGCCCAGAGAGTTTAGGCATACTCTCCTTTGGA
GGCCAGCAGCCTTTCACAAACCCTGCCTCTAAAAGGGCGGTTTCACATTTGACCATGTTTTTGCATTAGCCTCAGAAACTCTTGTCTTTA
GCTGATAACCTTTGAGGGATGTGAGAAGCCTAGTTGGAGCATCTGAGAAAATGATACCTCTCACCTTCAAATTAATCAAATAGTTTGTCC
TTCTAGTCCCCTTATAAATTAATAAATGGAGGGCTGGTCATGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGG
ATCACAAGGTCAGGAGTTCAAGACCAGCCTGACCAATATGGTGAAACCCCATCTCTACTAAAAATACAAAAATTAGCCAGGTGTAGTGGC
ACGCTCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATCGCTTGAACCCAGGAGGTGGATGTTGCAGTGAGCCGAGATCCCGC
CACTGCACTGCAGCCTAGGCGACAGAGCAAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAGAAAAGGGAAGGGAATCCCATTTTGTGAT
GATTTGGGCACACTACTTGAGCTGAGGCTAGCAGTCACATGATTTTGGCTGTCTCTGACCTGAAGCTTTTGAAGTAAGGTTATGTCTCTT
CCCTGAAGCTTTGTTTATAGTGGTAATTTGGTGAGTTTGAGCTTTGAGCTTGTCTTAGAAAATAAGACTGTCCACCTGGGGAGGGGAGCT
TATAGGGAACCCGTGTTAACTCAGAATGCTGAAGAAAGTGCTTTTAGCCAACAAAAGTAAGATTACTATCTAGAAGGTGGAAAGAAGTCA
TTGCTTCTGTTCCTCCAGCAGTCAGTTGACTCTAGGTTTCCTTTGGTTTATATCCCCAGTTCTTAATACTAAAACTTATTTGACTTCCTA
TCAGGAAGCACACAAAAAAAGCGTCATTTAAAACCCTGGATATAGGCTTTAAAGGATACAAAAACAGCAGCATTGTCGTTTTGCCAGGTT
CATCACCATTTTGATGTGCTACCCATCCTTCCACCCTCCCTTTCCTGCCCCCAAGCCTCCCAGCCAGGCCAGATGTGAAGATTCTATTAA
TCACTGTTTCAGAGAACATTAATTCTTGTATAGAATAATTATCTACTAAATTGCTTATTATCTGTGACTACCTTGCAGAGAACATCTCAA
CAGTGCAGTAAAATAGCTCTCCTAGACTTGAGCTTCCAGCCAGGCATTTAGATCACTCTTAAGCCTTTGTGGAATTCTGAGGAAAAAAAG
CAAGATGCCTCAATGCCAATGCTGGGCCATAAGATTCTACTCCCCTCCCTGTAGGGTGGGGCGCGTGGCTCAGCTTTGGAAAATCATTTT
GCCAGTAATATTGCCTGTGAATCCCTTTAAGAAGTCGTCCTGATCTGAGCCTGTCTTTCTGAGCACTTTGGTGCTGAATTGAAAATGGTA
AGCTAAAGCAGTGACAGATCCACGTAGCCTCTTTAACCTCTTTATTATCTTGCCAAAAAAAAAGTTTCTCAGGTTAAACCTTTGTCTTTA
ACCTCCCTTTGTTGTGGAGAAAATGTGTCACTAATCAGTGGTCCAAGGGATATCTAGCTTTGGTTACTCAGTTCCTGCAGCATAACAGAT
ATGACTTATGCCAGGGAAGGTAGAGGCTGATTATGGAGACACCCAGGAACAGGAATAAGAAGGGATAGGTCTGCTCCACGTAGAACCTCC
CCAGATCGGAAGTTAAGTCTTGGAGAGTTTCCAAAGTGCTGAAGTAAAAAGGAGACTTGGAGGGCCTTTGCTTAATGAGCAAGAGGCTTG
TGTCCTCCCAAGAACATGAGGGAGTTCAGAAGGGAGCTATAGCTCACAGACAGAAACCTGCCCGCTCACCCCATCCCTCGTGACTGGGAG
CATGTTTGCTCAGAATTTTCTAAGAGGACTCTCCCTTCAAAAATCCAATTTGCTCCCAGAATGTTGTTTAGCCTCTGAGAATCTCACTCT
TTCATTTCCATCTGTGAATGGACATAGATGTGTTGCTCAGGGATCAGAAACATCAGAGTCCAGGGCCCAGTGGCATGGTGTTGCATTAGT
AGTTAGAAAAGTAATTGGTCAGCTCTACTGTAAAAGAAATAAGTATGTAGTACAGTTTTGTAAATGTCAGGTCTGTTCTATTGTTTTGTG
ATCTGAAGACTGTCAAACTGGTTGATAATCAAAGAAAAGGTTGGTGGTTAGAATAAGTAAAATTTCAGTTAGAAAGATATAGCTTACCAG
TTTTCCATGTGCTTAAGGAAGTCAAGAATATTTCAGGTTGTTGAGAACTGTTGTAAAATGGAATTGAAGCTAGTGTCTCTCACCTTCTTA
GGTGTATCAGAGAGAGGAAGTGGAAGGCCAGTAGTAGCATCTTCATACTTACTTTTGCCAGCCCAGCCTCCATTTCAAAGACTTTGTCTT
CCATCCTATCCAATGACATGGTCAGGGATGGGCTCTGAGGAGGCAGTGAGGCCCCACCTTGGTTTGCTCCACTGTGGTGTGTAGTCTCCA
AACAGCTTAAGGGTTTTTAAGTTTTCTCACGATTACCTCCACTCCACTCATCTACTATCAGCATCAGAAAGGTTAACATCCCTGGGACCA
TTCTACTTATAAAAGAGATGAACTAGTGTGCTTTCTCCCCTTTTCCAGGTGTGCCATCCATATACAATCTCCTCTTGGCCAAGTTCAACA
AATGTTTCCAGGGAACCCCGTGGGTTGAGGCAAAGTAGCCAAGATGTATTGAGTTAAGTTTTTCTAGAGGACAAAAGTATTTCTTGTCCC
TTTTCCCTCATGCTCATATGTTTTAGCTGAGGCGTAAATGGCCAAGTTGAGTAATATCTGTGGAACTGAGACAGAGAGCCAGGGACCCAT
GTACCCAGGGACCAGTCCCCTGGGGAATCACACAGTGGCTCAGACTAGACTGCTCTATCCCACCAGAACTCTGCTGCTGTTCATTTCCAT
CAGGACCACCCAGGAAAGCAAATAAGTTAGCCTTCTCATCATTAGGTCACCTAATCTCTTGGGTTGCAGGATGAGAGCATATATAGATCT
CCTGTTTAGAGAGTGTGTTCATAATTGTAGAAAGGGATAGAAAATGGAATAACCAAGAGGCTGTGTCATTTTTTAAGAGGATGGCAAGGA
TGACCTCAAATGAGCTCAACAAAACTGGGAATCCAAGGAATGGTGCTTGTAGGGAAAGAGAGGTCAGTTGTGGTCCTTAAACCTCTTGGC
ACCTTGTGCGGGTTATAAAACAAGGAGCTGGAGTAAAATTGCCCTTACCCCCAATCCAAATGCTGTCCAGGATTTAGGAGCTACCCAACC
TGTGGTTATATGGTGTTGGTTTCCATTTTTTGTTTGTTTGCTTGTTTCCAAAATAGCCTTGCTTGGTACTGCATGGAAAGTTCAAGCTTT
TCTTCTTGCCCGCTCAGGGCTGGCCTCTTCCCCGTGTCTTCACAGCGTCCCTAAGGAAGATTTTTGCAGCACTCTCTGGAGCTGAGGGGA
GTGAAATTTGGTCCAGAGAAGGCGGAAGGAAATAGTTTTCCTGTTTCCTTTTCTCGAGGTGGATGTCCTCAGGCTTCCTTCACACCTCCT
TCTCATGGGTGCGGCTGGCAGTACAGTCAGGCTGTGGAGGAGGGCTGAGAAGAAAGGGGCACTGGTCCAGCCCCAGGTTTGGTCTGAGAC
AGGTACACAGCAGATACCATCCCACCTTCCTCTCTAAAGAACAGGCCAGCCACACATATAACCCTTTCCCTACTTTACTAATGTATCCCT
TATGTGGTACCAGCAATGGAGGACAGGCAGACTTACCCCCTGCCATCTAGAGAGAATGTTGTTATTACCCGTAAAACTTGACCACCCCCA
TATCCCACTCCTTTTTGTAAAAACAAATGCTTAAACCTGTGAGCCTGCCGTTCCTTTCTATGTGTTAATCAGTTTCCTTCCATTTGAGCT

>In-frame_ENST00000395892_ENST00000607016_TCGA-BF-AAP4-01A_CLIC1_chr6_31701343_-_NUDT3_chr6_34263462_length(amino acids)=147AA_start in transcript=192_stop in transcript=635
MVPDATMAEEQPQVELFVKAGSDGAKIGNCPFSQRLFMVLWLKGVTFNVTTVDTKRRTETVQKLCPGGQLPFLLYGTEVHTDTNKIEEFL

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Fusion Gene PPI Analysis for CLIC1-NUDT3


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page.


check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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Related Drugs for CLIC1-NUDT3


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.8 2021-05-08)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status
HgeneCLIC1O00299DB09130CopperSmall moleculeApproved|Investigational
HgeneCLIC1O00299DB09130CopperSmall moleculeApproved|Investigational
HgeneCLIC1O00299DB09130CopperSmall moleculeApproved|Investigational

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Related Diseases for CLIC1-NUDT3


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource
HgeneCLIC1C0006142Malignant neoplasm of breast1CTD_human
HgeneCLIC1C0019693HIV Infections1CTD_human
HgeneCLIC1C0022548Keloid1CTD_human
HgeneCLIC1C0023893Liver Cirrhosis, Experimental1CTD_human
HgeneCLIC1C0027627Neoplasm Metastasis1CTD_human
HgeneCLIC1C0029408Degenerative polyarthritis1CTD_human
HgeneCLIC1C0086743Osteoarthrosis Deformans1CTD_human
HgeneCLIC1C0279626Squamous cell carcinoma of esophagus1CTD_human
HgeneCLIC1C0678222Breast Carcinoma1CTD_human
HgeneCLIC1C1257931Mammary Neoplasms, Human1CTD_human
HgeneCLIC1C1458155Mammary Neoplasms1CTD_human
HgeneCLIC1C4505456HIV Coinfection1CTD_human
HgeneCLIC1C4704874Mammary Carcinoma, Human1CTD_human