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Center for Computational Systems Medicine
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Fusion Gene Summary

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Fusion Gene ORF analysis

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Fusion Genomic Features

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Fusion Protein Features

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Fusion Gene Sequence

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Fusion Gene PPI analysis

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Related Drugs

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Related Diseases

Fusion gene:CORO6-SLC20A2 (FusionGDB2 ID:18747)

Fusion Gene Summary for CORO6-SLC20A2

check button Fusion gene summary
Fusion gene informationFusion gene name: CORO6-SLC20A2
Fusion gene ID: 18747
HgeneTgene
Gene symbol

CORO6

SLC20A2

Gene ID

84940

6575

Gene namecoronin 6solute carrier family 20 member 2
Synonyms-GLVR-2|GLVR2|IBGC1|IBGC2|IBGC3|MLVAR|PIT-2|PIT2|RAM1|Ram-1
Cytomap

17q11.2

8p11.21

Type of geneprotein-codingprotein-coding
Descriptioncoronin-6clipin-Ecoronin, actin binding protein 6coronin-like protein Esodium-dependent phosphate transporter 2epididymis secretory sperm binding proteingibbon ape leukemia virus receptor 2murine leukemia virus, amphotropic, receptor formurine leukemia virus, amphotropic; receptorsolute carrier family 20 (phosphate tran
Modification date2020032020200313
UniProtAcc

Q6QEF8

.
Ensembl transtripts involved in fusion geneENST00000445145, ENST00000388767, 
ENST00000345068, ENST00000580212, 
ENST00000456796, ENST00000584969, 
ENST00000577909, 		ENST00000342228, 
ENST00000520262, ENST00000520179, 
ENST00000523340, 
Fusion gene scores* DoF score2 X 2 X 2=818 X 13 X 8=1872
# samples 218
** MAII scorelog2(2/8*10)=1.32192809488736log2(18/1872*10)=-3.37851162325373
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
Context

PubMed: CORO6 [Title/Abstract] AND SLC20A2 [Title/Abstract] AND fusion [Title/Abstract]

Most frequent breakpointSLC20A2(42278757)-CORO6(27943201), # samples:2
CORO6(27945808)-SLC20A2(42275485), # samples:1
Anticipated loss of major functional domain due to fusion event.CORO6-SLC20A2 seems lost the major protein functional domain in Tgene partner, which is a essential gene due to the frame-shifted ORF.
CORO6-SLC20A2 seems lost the major protein functional domain in Tgene partner, which is a IUPHAR drug target due to the frame-shifted ORF.
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID

check buttonFusion gene breakpoints across CORO6 (5'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.

check buttonFusion gene breakpoints across SLC20A2 (3'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.

check button Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0)
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
SourceDiseaseSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
ChimerDB4SKCMTCGA-EB-A3HV-01ACORO6chr17

27945808

-SLC20A2chr8

42275485

-


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Fusion Gene ORF analysis for CORO6-SLC20A2

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
In-frameENST00000445145ENST00000342228CORO6chr17

27945808

-SLC20A2chr8

42275485

-
In-frameENST00000445145ENST00000520262CORO6chr17

27945808

-SLC20A2chr8

42275485

-
In-frameENST00000445145ENST00000520179CORO6chr17

27945808

-SLC20A2chr8

42275485

-
5CDS-intronENST00000445145ENST00000523340CORO6chr17

27945808

-SLC20A2chr8

42275485

-
In-frameENST00000388767ENST00000342228CORO6chr17

27945808

-SLC20A2chr8

42275485

-
In-frameENST00000388767ENST00000520262CORO6chr17

27945808

-SLC20A2chr8

42275485

-
In-frameENST00000388767ENST00000520179CORO6chr17

27945808

-SLC20A2chr8

42275485

-
5CDS-intronENST00000388767ENST00000523340CORO6chr17

27945808

-SLC20A2chr8

42275485

-
Frame-shiftENST00000345068ENST00000342228CORO6chr17

27945808

-SLC20A2chr8

42275485

-
Frame-shiftENST00000345068ENST00000520262CORO6chr17

27945808

-SLC20A2chr8

42275485

-
Frame-shiftENST00000345068ENST00000520179CORO6chr17

27945808

-SLC20A2chr8

42275485

-
5CDS-intronENST00000345068ENST00000523340CORO6chr17

27945808

-SLC20A2chr8

42275485

-
In-frameENST00000580212ENST00000342228CORO6chr17

27945808

-SLC20A2chr8

42275485

-
In-frameENST00000580212ENST00000520262CORO6chr17

27945808

-SLC20A2chr8

42275485

-
In-frameENST00000580212ENST00000520179CORO6chr17

27945808

-SLC20A2chr8

42275485

-
5CDS-intronENST00000580212ENST00000523340CORO6chr17

27945808

-SLC20A2chr8

42275485

-
intron-3CDSENST00000456796ENST00000342228CORO6chr17

27945808

-SLC20A2chr8

42275485

-
intron-3CDSENST00000456796ENST00000520262CORO6chr17

27945808

-SLC20A2chr8

42275485

-
intron-3CDSENST00000456796ENST00000520179CORO6chr17

27945808

-SLC20A2chr8

42275485

-
intron-intronENST00000456796ENST00000523340CORO6chr17

27945808

-SLC20A2chr8

42275485

-
In-frameENST00000584969ENST00000342228CORO6chr17

27945808

-SLC20A2chr8

42275485

-
In-frameENST00000584969ENST00000520262CORO6chr17

27945808

-SLC20A2chr8

42275485

-
In-frameENST00000584969ENST00000520179CORO6chr17

27945808

-SLC20A2chr8

42275485

-
5CDS-intronENST00000584969ENST00000523340CORO6chr17

27945808

-SLC20A2chr8

42275485

-
intron-3CDSENST00000577909ENST00000342228CORO6chr17

27945808

-SLC20A2chr8

42275485

-
intron-3CDSENST00000577909ENST00000520262CORO6chr17

27945808

-SLC20A2chr8

42275485

-
intron-3CDSENST00000577909ENST00000520179CORO6chr17

27945808

-SLC20A2chr8

42275485

-
intron-intronENST00000577909ENST00000523340CORO6chr17

27945808

-SLC20A2chr8

42275485

-

check buttonORFfinder result based on the fusion transcript sequence of in-frame fusion genes.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandSeq length
(transcript)		BP loci
(transcript)		Predicted start
(transcript)		Predicted stop
(transcript)		Seq length
(amino acids)
ENST00000445145CORO6chr1727945808-ENST00000342228SLC20A2chr842275485-21286352799265
ENST00000445145CORO6chr1727945808-ENST00000520262SLC20A2chr842275485-11396352799265
ENST00000445145CORO6chr1727945808-ENST00000520179SLC20A2chr842275485-8006352799266
ENST00000388767CORO6chr1727945808-ENST00000342228SLC20A2chr842275485-21286352799265
ENST00000388767CORO6chr1727945808-ENST00000520262SLC20A2chr842275485-11396352799265
ENST00000388767CORO6chr1727945808-ENST00000520179SLC20A2chr842275485-8006352799266
ENST00000580212CORO6chr1727945808-ENST00000342228SLC20A2chr842275485-220571267876269
ENST00000580212CORO6chr1727945808-ENST00000520262SLC20A2chr842275485-121671267876269
ENST00000580212CORO6chr1727945808-ENST00000520179SLC20A2chr842275485-87771267876270
ENST00000584969CORO6chr1727945808-ENST00000342228SLC20A2chr842275485-21266330797265
ENST00000584969CORO6chr1727945808-ENST00000520262SLC20A2chr842275485-11376330797265
ENST00000584969CORO6chr1727945808-ENST00000520179SLC20A2chr842275485-7986330797265

check buttonDeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandNo-coding scoreCoding score
ENST00000445145ENST00000342228CORO6chr1727945808-SLC20A2chr842275485-0.000886980.999113
ENST00000445145ENST00000520262CORO6chr1727945808-SLC20A2chr842275485-0.0012452340.99875474
ENST00000445145ENST00000520179CORO6chr1727945808-SLC20A2chr842275485-0.0017310080.99826896
ENST00000388767ENST00000342228CORO6chr1727945808-SLC20A2chr842275485-0.000886980.999113
ENST00000388767ENST00000520262CORO6chr1727945808-SLC20A2chr842275485-0.0012452340.99875474
ENST00000388767ENST00000520179CORO6chr1727945808-SLC20A2chr842275485-0.0017310080.99826896
ENST00000580212ENST00000342228CORO6chr1727945808-SLC20A2chr842275485-0.0011578110.9988422
ENST00000580212ENST00000520262CORO6chr1727945808-SLC20A2chr842275485-0.0019315050.9980685
ENST00000580212ENST00000520179CORO6chr1727945808-SLC20A2chr842275485-0.0027794360.9972205
ENST00000584969ENST00000342228CORO6chr1727945808-SLC20A2chr842275485-0.0009038650.99909616
ENST00000584969ENST00000520262CORO6chr1727945808-SLC20A2chr842275485-0.0013043750.9986957
ENST00000584969ENST00000520179CORO6chr1727945808-SLC20A2chr842275485-0.0017690560.998231

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Fusion Genomic Features for CORO6-SLC20A2


check buttonFusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints.
HgeneHchrHbpHstrandTgeneTchrTbpTstrand1-pp (fusion gene breakpoint)

check buttonDistribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page.

check buttonDistribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page.

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Fusion Protein Features for CORO6-SLC20A2


check button Go to

FGviewer for the breakpoints of chr17:27945808-chr8:42275485

.
- FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels.
FGviewer

check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
CORO6

Q6QEF8

.
FUNCTION: Might normally function as a transcriptional repressor. EWS-fusion-proteins (EFPS) may play a role in the tumorigenic process. They may disturb gene expression by mimicking, or interfering with the normal function of CTD-POLII within the transcription initiation complex. They may also contribute to an aberrant activation of the fusion protein target genes.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page


* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
HgeneCORO6chr17:27945808chr8:42275485ENST00000345068-51154_57211.0473.0Compositional biasNote=Poly-Gly
HgeneCORO6chr17:27945808chr8:42275485ENST00000388767-41054_57211.0473.0Compositional biasNote=Poly-Gly
HgeneCORO6chr17:27945808chr8:42275485ENST00000445145-41054_57211.0473.0Compositional biasNote=Poly-Gly
HgeneCORO6chr17:27945808chr8:42275485ENST00000345068-511122_161211.0473.0RepeatNote=WD 3
HgeneCORO6chr17:27945808chr8:42275485ENST00000345068-511165_204211.0473.0RepeatNote=WD 4
HgeneCORO6chr17:27945808chr8:42275485ENST00000345068-51123_64211.0473.0RepeatNote=WD 1
HgeneCORO6chr17:27945808chr8:42275485ENST00000345068-51172_111211.0473.0RepeatNote=WD 2
HgeneCORO6chr17:27945808chr8:42275485ENST00000388767-410122_161211.0473.0RepeatNote=WD 3
HgeneCORO6chr17:27945808chr8:42275485ENST00000388767-410165_204211.0473.0RepeatNote=WD 4
HgeneCORO6chr17:27945808chr8:42275485ENST00000388767-41023_64211.0473.0RepeatNote=WD 1
HgeneCORO6chr17:27945808chr8:42275485ENST00000388767-41072_111211.0473.0RepeatNote=WD 2
HgeneCORO6chr17:27945808chr8:42275485ENST00000445145-410122_161211.0473.0RepeatNote=WD 3
HgeneCORO6chr17:27945808chr8:42275485ENST00000445145-410165_204211.0473.0RepeatNote=WD 4
HgeneCORO6chr17:27945808chr8:42275485ENST00000445145-41023_64211.0473.0RepeatNote=WD 1
HgeneCORO6chr17:27945808chr8:42275485ENST00000445145-41072_111211.0473.0RepeatNote=WD 2
TgeneSLC20A2chr17:27945808chr8:42275485ENST00000342228911610_621598.0653.0Topological domainCytoplasmic
TgeneSLC20A2chr17:27945808chr8:42275485ENST00000342228911643_652598.0653.0Topological domainExtracellular
TgeneSLC20A2chr17:27945808chr8:42275485ENST00000520179911610_621598.0653.0Topological domainCytoplasmic
TgeneSLC20A2chr17:27945808chr8:42275485ENST00000520179911643_652598.0653.0Topological domainExtracellular
TgeneSLC20A2chr17:27945808chr8:42275485ENST00000520262911610_621598.0653.0Topological domainCytoplasmic
TgeneSLC20A2chr17:27945808chr8:42275485ENST00000520262911643_652598.0653.0Topological domainExtracellular
TgeneSLC20A2chr17:27945808chr8:42275485ENST00000342228911622_642598.0653.0TransmembraneHelical
TgeneSLC20A2chr17:27945808chr8:42275485ENST00000520179911622_642598.0653.0TransmembraneHelical
TgeneSLC20A2chr17:27945808chr8:42275485ENST00000520262911622_642598.0653.0TransmembraneHelical

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
HgeneCORO6chr17:27945808chr8:42275485ENST00000345068-511430_464211.0473.0Coiled coilOntology_term=ECO:0000255
HgeneCORO6chr17:27945808chr8:42275485ENST00000388767-410430_464211.0473.0Coiled coilOntology_term=ECO:0000255
HgeneCORO6chr17:27945808chr8:42275485ENST00000445145-410430_464211.0473.0Coiled coilOntology_term=ECO:0000255
HgeneCORO6chr17:27945808chr8:42275485ENST00000456796-17430_4640238.0Coiled coilOntology_term=ECO:0000255
HgeneCORO6chr17:27945808chr8:42275485ENST00000456796-1754_570238.0Compositional biasNote=Poly-Gly
HgeneCORO6chr17:27945808chr8:42275485ENST00000345068-511210_251211.0473.0RepeatNote=WD 5
HgeneCORO6chr17:27945808chr8:42275485ENST00000345068-511256_296211.0473.0RepeatNote=WD 6
HgeneCORO6chr17:27945808chr8:42275485ENST00000388767-410210_251211.0473.0RepeatNote=WD 5
HgeneCORO6chr17:27945808chr8:42275485ENST00000388767-410256_296211.0473.0RepeatNote=WD 6
HgeneCORO6chr17:27945808chr8:42275485ENST00000445145-410210_251211.0473.0RepeatNote=WD 5
HgeneCORO6chr17:27945808chr8:42275485ENST00000445145-410256_296211.0473.0RepeatNote=WD 6
HgeneCORO6chr17:27945808chr8:42275485ENST00000456796-17122_1610238.0RepeatNote=WD 3
HgeneCORO6chr17:27945808chr8:42275485ENST00000456796-17165_2040238.0RepeatNote=WD 4
HgeneCORO6chr17:27945808chr8:42275485ENST00000456796-17210_2510238.0RepeatNote=WD 5
HgeneCORO6chr17:27945808chr8:42275485ENST00000456796-1723_640238.0RepeatNote=WD 1
HgeneCORO6chr17:27945808chr8:42275485ENST00000456796-17256_2960238.0RepeatNote=WD 6
HgeneCORO6chr17:27945808chr8:42275485ENST00000456796-1772_1110238.0RepeatNote=WD 2
TgeneSLC20A2chr17:27945808chr8:42275485ENST00000342228911108_109598.0653.0Topological domainCytoplasmic
TgeneSLC20A2chr17:27945808chr8:42275485ENST00000342228911131_142598.0653.0Topological domainExtracellular
TgeneSLC20A2chr17:27945808chr8:42275485ENST00000342228911164_190598.0653.0Topological domainCytoplasmic
TgeneSLC20A2chr17:27945808chr8:42275485ENST000003422289111_5598.0653.0Topological domainExtracellular
TgeneSLC20A2chr17:27945808chr8:42275485ENST00000342228911212_213598.0653.0Topological domainExtracellular
TgeneSLC20A2chr17:27945808chr8:42275485ENST00000342228911235_482598.0653.0Topological domainCytoplasmic
TgeneSLC20A2chr17:27945808chr8:42275485ENST0000034222891127_46598.0653.0Topological domainCytoplasmic
TgeneSLC20A2chr17:27945808chr8:42275485ENST00000342228911504_530598.0653.0Topological domainExtracellular
TgeneSLC20A2chr17:27945808chr8:42275485ENST00000342228911552_571598.0653.0Topological domainCytoplasmic
TgeneSLC20A2chr17:27945808chr8:42275485ENST00000342228911587_593598.0653.0Topological domainExtracellular
TgeneSLC20A2chr17:27945808chr8:42275485ENST0000034222891168_86598.0653.0Topological domainExtracellular
TgeneSLC20A2chr17:27945808chr8:42275485ENST00000520179911108_109598.0653.0Topological domainCytoplasmic
TgeneSLC20A2chr17:27945808chr8:42275485ENST00000520179911131_142598.0653.0Topological domainExtracellular
TgeneSLC20A2chr17:27945808chr8:42275485ENST00000520179911164_190598.0653.0Topological domainCytoplasmic
TgeneSLC20A2chr17:27945808chr8:42275485ENST000005201799111_5598.0653.0Topological domainExtracellular
TgeneSLC20A2chr17:27945808chr8:42275485ENST00000520179911212_213598.0653.0Topological domainExtracellular
TgeneSLC20A2chr17:27945808chr8:42275485ENST00000520179911235_482598.0653.0Topological domainCytoplasmic
TgeneSLC20A2chr17:27945808chr8:42275485ENST0000052017991127_46598.0653.0Topological domainCytoplasmic
TgeneSLC20A2chr17:27945808chr8:42275485ENST00000520179911504_530598.0653.0Topological domainExtracellular
TgeneSLC20A2chr17:27945808chr8:42275485ENST00000520179911552_571598.0653.0Topological domainCytoplasmic
TgeneSLC20A2chr17:27945808chr8:42275485ENST00000520179911587_593598.0653.0Topological domainExtracellular
TgeneSLC20A2chr17:27945808chr8:42275485ENST0000052017991168_86598.0653.0Topological domainExtracellular
TgeneSLC20A2chr17:27945808chr8:42275485ENST00000520262911108_109598.0653.0Topological domainCytoplasmic
TgeneSLC20A2chr17:27945808chr8:42275485ENST00000520262911131_142598.0653.0Topological domainExtracellular
TgeneSLC20A2chr17:27945808chr8:42275485ENST00000520262911164_190598.0653.0Topological domainCytoplasmic
TgeneSLC20A2chr17:27945808chr8:42275485ENST000005202629111_5598.0653.0Topological domainExtracellular
TgeneSLC20A2chr17:27945808chr8:42275485ENST00000520262911212_213598.0653.0Topological domainExtracellular
TgeneSLC20A2chr17:27945808chr8:42275485ENST00000520262911235_482598.0653.0Topological domainCytoplasmic
TgeneSLC20A2chr17:27945808chr8:42275485ENST0000052026291127_46598.0653.0Topological domainCytoplasmic
TgeneSLC20A2chr17:27945808chr8:42275485ENST00000520262911504_530598.0653.0Topological domainExtracellular
TgeneSLC20A2chr17:27945808chr8:42275485ENST00000520262911552_571598.0653.0Topological domainCytoplasmic
TgeneSLC20A2chr17:27945808chr8:42275485ENST00000520262911587_593598.0653.0Topological domainExtracellular
TgeneSLC20A2chr17:27945808chr8:42275485ENST0000052026291168_86598.0653.0Topological domainExtracellular
TgeneSLC20A2chr17:27945808chr8:42275485ENST00000342228911110_130598.0653.0TransmembraneHelical
TgeneSLC20A2chr17:27945808chr8:42275485ENST00000342228911143_163598.0653.0TransmembraneHelical
TgeneSLC20A2chr17:27945808chr8:42275485ENST00000342228911191_211598.0653.0TransmembraneHelical
TgeneSLC20A2chr17:27945808chr8:42275485ENST00000342228911214_234598.0653.0TransmembraneHelical
TgeneSLC20A2chr17:27945808chr8:42275485ENST0000034222891147_67598.0653.0TransmembraneHelical
TgeneSLC20A2chr17:27945808chr8:42275485ENST00000342228911483_503598.0653.0TransmembraneHelical
TgeneSLC20A2chr17:27945808chr8:42275485ENST00000342228911531_551598.0653.0TransmembraneHelical
TgeneSLC20A2chr17:27945808chr8:42275485ENST00000342228911572_586598.0653.0TransmembraneHelical
TgeneSLC20A2chr17:27945808chr8:42275485ENST00000342228911594_609598.0653.0TransmembraneHelical
TgeneSLC20A2chr17:27945808chr8:42275485ENST000003422289116_26598.0653.0TransmembraneHelical
TgeneSLC20A2chr17:27945808chr8:42275485ENST0000034222891187_107598.0653.0TransmembraneHelical
TgeneSLC20A2chr17:27945808chr8:42275485ENST00000520179911110_130598.0653.0TransmembraneHelical
TgeneSLC20A2chr17:27945808chr8:42275485ENST00000520179911143_163598.0653.0TransmembraneHelical
TgeneSLC20A2chr17:27945808chr8:42275485ENST00000520179911191_211598.0653.0TransmembraneHelical
TgeneSLC20A2chr17:27945808chr8:42275485ENST00000520179911214_234598.0653.0TransmembraneHelical
TgeneSLC20A2chr17:27945808chr8:42275485ENST0000052017991147_67598.0653.0TransmembraneHelical
TgeneSLC20A2chr17:27945808chr8:42275485ENST00000520179911483_503598.0653.0TransmembraneHelical
TgeneSLC20A2chr17:27945808chr8:42275485ENST00000520179911531_551598.0653.0TransmembraneHelical
TgeneSLC20A2chr17:27945808chr8:42275485ENST00000520179911572_586598.0653.0TransmembraneHelical
TgeneSLC20A2chr17:27945808chr8:42275485ENST00000520179911594_609598.0653.0TransmembraneHelical
TgeneSLC20A2chr17:27945808chr8:42275485ENST000005201799116_26598.0653.0TransmembraneHelical
TgeneSLC20A2chr17:27945808chr8:42275485ENST0000052017991187_107598.0653.0TransmembraneHelical
TgeneSLC20A2chr17:27945808chr8:42275485ENST00000520262911110_130598.0653.0TransmembraneHelical
TgeneSLC20A2chr17:27945808chr8:42275485ENST00000520262911143_163598.0653.0TransmembraneHelical
TgeneSLC20A2chr17:27945808chr8:42275485ENST00000520262911191_211598.0653.0TransmembraneHelical
TgeneSLC20A2chr17:27945808chr8:42275485ENST00000520262911214_234598.0653.0TransmembraneHelical
TgeneSLC20A2chr17:27945808chr8:42275485ENST0000052026291147_67598.0653.0TransmembraneHelical
TgeneSLC20A2chr17:27945808chr8:42275485ENST00000520262911483_503598.0653.0TransmembraneHelical
TgeneSLC20A2chr17:27945808chr8:42275485ENST00000520262911531_551598.0653.0TransmembraneHelical
TgeneSLC20A2chr17:27945808chr8:42275485ENST00000520262911572_586598.0653.0TransmembraneHelical
TgeneSLC20A2chr17:27945808chr8:42275485ENST00000520262911594_609598.0653.0TransmembraneHelical
TgeneSLC20A2chr17:27945808chr8:42275485ENST000005202629116_26598.0653.0TransmembraneHelical
TgeneSLC20A2chr17:27945808chr8:42275485ENST0000052026291187_107598.0653.0TransmembraneHelical


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Fusion Gene Sequence for CORO6-SLC20A2


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones.
>In-frame_ENST00000445145_ENST00000342228_TCGA-EB-A3HV-01A_CORO6_chr17_27945808_-_SLC20A2_chr8_42275485_length(transcript)=2128nt_BP=635nt
CTATGAGCAGACGTGTGGTTCGGCAAAGCAAGTTCCGCCATGTGTTTGGGCAGGCAGCAAAGGCCGACCAGGCCTACGAGGACATCCGTG
TGTCCAAGGTCACATGGGACAGCTCCTTCTGTGCCGTCAACCCCAAATTCCTGGCCATTATTGTGGAGGCTGGAGGCGGGGGTGCCTTCA
TCGTCCTGCCTCTGGCCAAGACAGGGCGAGTGGATAAGAACTACCCACTGGTCACTGGGCACACTGCCCCTGTGCTGGATATTGACTGGT
GTCCACACAATGACAACGTTATCGCCAGTGCCTCAGACGACACCACCATCATGGTGTGGCAGATTCCAGACTATACCCCCATGCGCAACA
TTACGGAACCTATCATCACACTTGAGGGCCACTCCAAGCGTGTGGGCATCCTCTCCTGGCACCCTACTGCCAGGAATGTCCTGCTCAGTG
CAGGTGGTGACAATGTGATCATCATCTGGAATGTGGGCACCGGGGAGGTGCTGCTGAGCCTGGATGATATGCACCCAGACGTCATCCACA
GTGTGTGCTGGAACAGCAACGGTAGCCTGCTAGCCACCACCTGCAAGGACAAGACCTTGCGCATCATTGACCCCAGAAAAGGCCAAGTGG
TGGCGGTGGGCTCGGTGGTGGCCGTGGGCTGGATCCGCTCCCGCAAGGCTGTGGACTGGCGCCTCTTTCGGAACATCTTCGTGGCCTGGT
TCGTGACCGTCCCTGTGGCTGGGCTGTTCAGCGCTGCTGTCATGGCTCTTCTCATGTATGGGATCCTTCCATATGTGTGATTTGTCTTCT
TCCAGCTGCAAACAGCTAAAGGGATGGTCTGGTGTTGGCGTGTGGGAGACATGTGTGCTCGTGCCGCACATACACATCCTGGCCGTGCAC
GGCTCTCTCATGACCAGCTCTCTGCCTCCCTTCCAGGAGGCTCCATCCCACACTGTTCACCCAGGCTGCGGAGACTCACCTTCCCGAGCT
AACTTAACTACTGTACATAATAATATGTATTAAACTGGTATCGTGGTGATATAATGTGGTGCAGTTACTTATATATTAAATATCTATTGT
ATCCATAGAATAGGCAGCATTATTTCAAACATATTCAAGTTGGGAGTGGAGATCATTGCCTAGAAGTCAATATTCAATAAATCTTGTACA
TAACTATTTCGATGGCAAATGTTAAGCCTTCTAAAAGGAAAGTGTAGATTGGAAAATGATTTTTTTTCCAAATGATGTTTTTGCCTTCTA
ATATACTGTAAGGTAATGAGCTTCAGAACAGGCAACCTGACCCTGCAGAGGTCGCGTGCTGTGGGATGACAGCGGGACGGGAGCTCACAA
GTGCTTTCACTGAAGATTTGTTCATATACTGTGTATTGATTGTTGTGTAATATATCATCATTGCTTTTGTAAATACGTAAAACTGTAATT
TTTTAATGGTGTGCTTCCCTTATACTTTTTTGATCAGAGAATTTTGGAAAGTACCAAAGAAGCAGGGGAATCATTGGCCAGTGTTACGTT
TTCACATTGTCTGTCTCCCACCCTCACTGATCACGCCTGCCCCAGAGCAGTGTGTGGCGGTGACACCGTCACCCAGCATGCGCCACGCCG
TGGCTCCCACCAGCAGTGCCACCGCCACCACACCCCAGATCCCACCCACCTTGCAGTGGCCTTTCCTTGTCATCAGAGTAGAGAATGCAC
AGGTGTTGGTGAGGGCGTGTGGCTGAGCACTACATGTCAAGTCCAGAGTCAGTTTCTATCCCAATTCTCCCTGCAGCCTGAAGAACGGAT
CCTTGTCTCCAATGTCAGCACAAAGGAGGCTTTTTCTGTGCTTTGACATTCTAGCACTTCAGGGATGAGAGGGAGGGAGAATCCTGGATG
CTGGATGGAGTATTTCTCTGAGGCCCACACAAAGCTGGACACCCCCAGGCTCTACTCCATCCCATTGGAGTCTCTTCTTTTTTTGATAGC
GGGAGGGAGGAAGTACGACTAATGTTGGAGCCTGAAACTATGGAAATGCTGCTAAAATTTTTATATTGACAAACATTTTCTTGGTACTTC

>In-frame_ENST00000445145_ENST00000342228_TCGA-EB-A3HV-01A_CORO6_chr17_27945808_-_SLC20A2_chr8_42275485_length(amino acids)=265AA_start in transcript=2_stop in transcript=799
MSRRVVRQSKFRHVFGQAAKADQAYEDIRVSKVTWDSSFCAVNPKFLAIIVEAGGGGAFIVLPLAKTGRVDKNYPLVTGHTAPVLDIDWC
PHNDNVIASASDDTTIMVWQIPDYTPMRNITEPIITLEGHSKRVGILSWHPTARNVLLSAGGDNVIIIWNVGTGEVLLSLDDMHPDVIHS

--------------------------------------------------------------
>In-frame_ENST00000445145_ENST00000520262_TCGA-EB-A3HV-01A_CORO6_chr17_27945808_-_SLC20A2_chr8_42275485_length(transcript)=1139nt_BP=635nt
CTATGAGCAGACGTGTGGTTCGGCAAAGCAAGTTCCGCCATGTGTTTGGGCAGGCAGCAAAGGCCGACCAGGCCTACGAGGACATCCGTG
TGTCCAAGGTCACATGGGACAGCTCCTTCTGTGCCGTCAACCCCAAATTCCTGGCCATTATTGTGGAGGCTGGAGGCGGGGGTGCCTTCA
TCGTCCTGCCTCTGGCCAAGACAGGGCGAGTGGATAAGAACTACCCACTGGTCACTGGGCACACTGCCCCTGTGCTGGATATTGACTGGT
GTCCACACAATGACAACGTTATCGCCAGTGCCTCAGACGACACCACCATCATGGTGTGGCAGATTCCAGACTATACCCCCATGCGCAACA
TTACGGAACCTATCATCACACTTGAGGGCCACTCCAAGCGTGTGGGCATCCTCTCCTGGCACCCTACTGCCAGGAATGTCCTGCTCAGTG
CAGGTGGTGACAATGTGATCATCATCTGGAATGTGGGCACCGGGGAGGTGCTGCTGAGCCTGGATGATATGCACCCAGACGTCATCCACA
GTGTGTGCTGGAACAGCAACGGTAGCCTGCTAGCCACCACCTGCAAGGACAAGACCTTGCGCATCATTGACCCCAGAAAAGGCCAAGTGG
TGGCGGTGGGCTCGGTGGTGGCCGTGGGCTGGATCCGCTCCCGCAAGGCTGTGGACTGGCGCCTCTTTCGGAACATCTTCGTGGCCTGGT
TCGTGACCGTCCCTGTGGCTGGGCTGTTCAGCGCTGCTGTCATGGCTCTTCTCATGTATGGGATCCTTCCATATGTGTGATTTGTCTTCT
TCCAGCTGCAAACAGCTAAAGGGATGGTCTGGTGTTGGCGTGTGGGAGACATGTGTGCTCGTGCCGCACATACACATCCTGGCCGTGCAC
GGCTCTCTCATGACCAGCTCTCTGCCTCCCTTCCAGGAGGCTCCATCCCACACTGTTCACCCAGGCTGCGGAGACTCACCTTCCCGAGCT
AACTTAACTACTGTACATAATAATATGTATTAAACTGGTATCGTGGTGATATAATGTGGTGCAGTTACTTATATATTAAATATCTATTGT

>In-frame_ENST00000445145_ENST00000520262_TCGA-EB-A3HV-01A_CORO6_chr17_27945808_-_SLC20A2_chr8_42275485_length(amino acids)=265AA_start in transcript=2_stop in transcript=799
MSRRVVRQSKFRHVFGQAAKADQAYEDIRVSKVTWDSSFCAVNPKFLAIIVEAGGGGAFIVLPLAKTGRVDKNYPLVTGHTAPVLDIDWC
PHNDNVIASASDDTTIMVWQIPDYTPMRNITEPIITLEGHSKRVGILSWHPTARNVLLSAGGDNVIIIWNVGTGEVLLSLDDMHPDVIHS

--------------------------------------------------------------
>In-frame_ENST00000445145_ENST00000520179_TCGA-EB-A3HV-01A_CORO6_chr17_27945808_-_SLC20A2_chr8_42275485_length(transcript)=800nt_BP=635nt
CTATGAGCAGACGTGTGGTTCGGCAAAGCAAGTTCCGCCATGTGTTTGGGCAGGCAGCAAAGGCCGACCAGGCCTACGAGGACATCCGTG
TGTCCAAGGTCACATGGGACAGCTCCTTCTGTGCCGTCAACCCCAAATTCCTGGCCATTATTGTGGAGGCTGGAGGCGGGGGTGCCTTCA
TCGTCCTGCCTCTGGCCAAGACAGGGCGAGTGGATAAGAACTACCCACTGGTCACTGGGCACACTGCCCCTGTGCTGGATATTGACTGGT
GTCCACACAATGACAACGTTATCGCCAGTGCCTCAGACGACACCACCATCATGGTGTGGCAGATTCCAGACTATACCCCCATGCGCAACA
TTACGGAACCTATCATCACACTTGAGGGCCACTCCAAGCGTGTGGGCATCCTCTCCTGGCACCCTACTGCCAGGAATGTCCTGCTCAGTG
CAGGTGGTGACAATGTGATCATCATCTGGAATGTGGGCACCGGGGAGGTGCTGCTGAGCCTGGATGATATGCACCCAGACGTCATCCACA
GTGTGTGCTGGAACAGCAACGGTAGCCTGCTAGCCACCACCTGCAAGGACAAGACCTTGCGCATCATTGACCCCAGAAAAGGCCAAGTGG
TGGCGGTGGGCTCGGTGGTGGCCGTGGGCTGGATCCGCTCCCGCAAGGCTGTGGACTGGCGCCTCTTTCGGAACATCTTCGTGGCCTGGT

>In-frame_ENST00000445145_ENST00000520179_TCGA-EB-A3HV-01A_CORO6_chr17_27945808_-_SLC20A2_chr8_42275485_length(amino acids)=266AA_start in transcript=2_stop in transcript=799
MSRRVVRQSKFRHVFGQAAKADQAYEDIRVSKVTWDSSFCAVNPKFLAIIVEAGGGGAFIVLPLAKTGRVDKNYPLVTGHTAPVLDIDWC
PHNDNVIASASDDTTIMVWQIPDYTPMRNITEPIITLEGHSKRVGILSWHPTARNVLLSAGGDNVIIIWNVGTGEVLLSLDDMHPDVIHS

--------------------------------------------------------------
>In-frame_ENST00000388767_ENST00000342228_TCGA-EB-A3HV-01A_CORO6_chr17_27945808_-_SLC20A2_chr8_42275485_length(transcript)=2128nt_BP=635nt
CTATGAGCAGACGTGTGGTTCGGCAAAGCAAGTTCCGCCATGTGTTTGGGCAGGCAGCAAAGGCCGACCAGGCCTACGAGGACATCCGTG
TGTCCAAGGTCACATGGGACAGCTCCTTCTGTGCCGTCAACCCCAAATTCCTGGCCATTATTGTGGAGGCTGGAGGCGGGGGTGCCTTCA
TCGTCCTGCCTCTGGCCAAGACAGGGCGAGTGGATAAGAACTACCCACTGGTCACTGGGCACACTGCCCCTGTGCTGGATATTGACTGGT
GTCCACACAATGACAACGTTATCGCCAGTGCCTCAGACGACACCACCATCATGGTGTGGCAGATTCCAGACTATACCCCCATGCGCAACA
TTACGGAACCTATCATCACACTTGAGGGCCACTCCAAGCGTGTGGGCATCCTCTCCTGGCACCCTACTGCCAGGAATGTCCTGCTCAGTG
CAGGTGGTGACAATGTGATCATCATCTGGAATGTGGGCACCGGGGAGGTGCTGCTGAGCCTGGATGATATGCACCCAGACGTCATCCACA
GTGTGTGCTGGAACAGCAACGGTAGCCTGCTAGCCACCACCTGCAAGGACAAGACCTTGCGCATCATTGACCCCAGAAAAGGCCAAGTGG
TGGCGGTGGGCTCGGTGGTGGCCGTGGGCTGGATCCGCTCCCGCAAGGCTGTGGACTGGCGCCTCTTTCGGAACATCTTCGTGGCCTGGT
TCGTGACCGTCCCTGTGGCTGGGCTGTTCAGCGCTGCTGTCATGGCTCTTCTCATGTATGGGATCCTTCCATATGTGTGATTTGTCTTCT
TCCAGCTGCAAACAGCTAAAGGGATGGTCTGGTGTTGGCGTGTGGGAGACATGTGTGCTCGTGCCGCACATACACATCCTGGCCGTGCAC
GGCTCTCTCATGACCAGCTCTCTGCCTCCCTTCCAGGAGGCTCCATCCCACACTGTTCACCCAGGCTGCGGAGACTCACCTTCCCGAGCT
AACTTAACTACTGTACATAATAATATGTATTAAACTGGTATCGTGGTGATATAATGTGGTGCAGTTACTTATATATTAAATATCTATTGT
ATCCATAGAATAGGCAGCATTATTTCAAACATATTCAAGTTGGGAGTGGAGATCATTGCCTAGAAGTCAATATTCAATAAATCTTGTACA
TAACTATTTCGATGGCAAATGTTAAGCCTTCTAAAAGGAAAGTGTAGATTGGAAAATGATTTTTTTTCCAAATGATGTTTTTGCCTTCTA
ATATACTGTAAGGTAATGAGCTTCAGAACAGGCAACCTGACCCTGCAGAGGTCGCGTGCTGTGGGATGACAGCGGGACGGGAGCTCACAA
GTGCTTTCACTGAAGATTTGTTCATATACTGTGTATTGATTGTTGTGTAATATATCATCATTGCTTTTGTAAATACGTAAAACTGTAATT
TTTTAATGGTGTGCTTCCCTTATACTTTTTTGATCAGAGAATTTTGGAAAGTACCAAAGAAGCAGGGGAATCATTGGCCAGTGTTACGTT
TTCACATTGTCTGTCTCCCACCCTCACTGATCACGCCTGCCCCAGAGCAGTGTGTGGCGGTGACACCGTCACCCAGCATGCGCCACGCCG
TGGCTCCCACCAGCAGTGCCACCGCCACCACACCCCAGATCCCACCCACCTTGCAGTGGCCTTTCCTTGTCATCAGAGTAGAGAATGCAC
AGGTGTTGGTGAGGGCGTGTGGCTGAGCACTACATGTCAAGTCCAGAGTCAGTTTCTATCCCAATTCTCCCTGCAGCCTGAAGAACGGAT
CCTTGTCTCCAATGTCAGCACAAAGGAGGCTTTTTCTGTGCTTTGACATTCTAGCACTTCAGGGATGAGAGGGAGGGAGAATCCTGGATG
CTGGATGGAGTATTTCTCTGAGGCCCACACAAAGCTGGACACCCCCAGGCTCTACTCCATCCCATTGGAGTCTCTTCTTTTTTTGATAGC
GGGAGGGAGGAAGTACGACTAATGTTGGAGCCTGAAACTATGGAAATGCTGCTAAAATTTTTATATTGACAAACATTTTCTTGGTACTTC

>In-frame_ENST00000388767_ENST00000342228_TCGA-EB-A3HV-01A_CORO6_chr17_27945808_-_SLC20A2_chr8_42275485_length(amino acids)=265AA_start in transcript=2_stop in transcript=799
MSRRVVRQSKFRHVFGQAAKADQAYEDIRVSKVTWDSSFCAVNPKFLAIIVEAGGGGAFIVLPLAKTGRVDKNYPLVTGHTAPVLDIDWC
PHNDNVIASASDDTTIMVWQIPDYTPMRNITEPIITLEGHSKRVGILSWHPTARNVLLSAGGDNVIIIWNVGTGEVLLSLDDMHPDVIHS

--------------------------------------------------------------
>In-frame_ENST00000388767_ENST00000520262_TCGA-EB-A3HV-01A_CORO6_chr17_27945808_-_SLC20A2_chr8_42275485_length(transcript)=1139nt_BP=635nt
CTATGAGCAGACGTGTGGTTCGGCAAAGCAAGTTCCGCCATGTGTTTGGGCAGGCAGCAAAGGCCGACCAGGCCTACGAGGACATCCGTG
TGTCCAAGGTCACATGGGACAGCTCCTTCTGTGCCGTCAACCCCAAATTCCTGGCCATTATTGTGGAGGCTGGAGGCGGGGGTGCCTTCA
TCGTCCTGCCTCTGGCCAAGACAGGGCGAGTGGATAAGAACTACCCACTGGTCACTGGGCACACTGCCCCTGTGCTGGATATTGACTGGT
GTCCACACAATGACAACGTTATCGCCAGTGCCTCAGACGACACCACCATCATGGTGTGGCAGATTCCAGACTATACCCCCATGCGCAACA
TTACGGAACCTATCATCACACTTGAGGGCCACTCCAAGCGTGTGGGCATCCTCTCCTGGCACCCTACTGCCAGGAATGTCCTGCTCAGTG
CAGGTGGTGACAATGTGATCATCATCTGGAATGTGGGCACCGGGGAGGTGCTGCTGAGCCTGGATGATATGCACCCAGACGTCATCCACA
GTGTGTGCTGGAACAGCAACGGTAGCCTGCTAGCCACCACCTGCAAGGACAAGACCTTGCGCATCATTGACCCCAGAAAAGGCCAAGTGG
TGGCGGTGGGCTCGGTGGTGGCCGTGGGCTGGATCCGCTCCCGCAAGGCTGTGGACTGGCGCCTCTTTCGGAACATCTTCGTGGCCTGGT
TCGTGACCGTCCCTGTGGCTGGGCTGTTCAGCGCTGCTGTCATGGCTCTTCTCATGTATGGGATCCTTCCATATGTGTGATTTGTCTTCT
TCCAGCTGCAAACAGCTAAAGGGATGGTCTGGTGTTGGCGTGTGGGAGACATGTGTGCTCGTGCCGCACATACACATCCTGGCCGTGCAC
GGCTCTCTCATGACCAGCTCTCTGCCTCCCTTCCAGGAGGCTCCATCCCACACTGTTCACCCAGGCTGCGGAGACTCACCTTCCCGAGCT
AACTTAACTACTGTACATAATAATATGTATTAAACTGGTATCGTGGTGATATAATGTGGTGCAGTTACTTATATATTAAATATCTATTGT

>In-frame_ENST00000388767_ENST00000520262_TCGA-EB-A3HV-01A_CORO6_chr17_27945808_-_SLC20A2_chr8_42275485_length(amino acids)=265AA_start in transcript=2_stop in transcript=799
MSRRVVRQSKFRHVFGQAAKADQAYEDIRVSKVTWDSSFCAVNPKFLAIIVEAGGGGAFIVLPLAKTGRVDKNYPLVTGHTAPVLDIDWC
PHNDNVIASASDDTTIMVWQIPDYTPMRNITEPIITLEGHSKRVGILSWHPTARNVLLSAGGDNVIIIWNVGTGEVLLSLDDMHPDVIHS

--------------------------------------------------------------
>In-frame_ENST00000388767_ENST00000520179_TCGA-EB-A3HV-01A_CORO6_chr17_27945808_-_SLC20A2_chr8_42275485_length(transcript)=800nt_BP=635nt
CTATGAGCAGACGTGTGGTTCGGCAAAGCAAGTTCCGCCATGTGTTTGGGCAGGCAGCAAAGGCCGACCAGGCCTACGAGGACATCCGTG
TGTCCAAGGTCACATGGGACAGCTCCTTCTGTGCCGTCAACCCCAAATTCCTGGCCATTATTGTGGAGGCTGGAGGCGGGGGTGCCTTCA
TCGTCCTGCCTCTGGCCAAGACAGGGCGAGTGGATAAGAACTACCCACTGGTCACTGGGCACACTGCCCCTGTGCTGGATATTGACTGGT
GTCCACACAATGACAACGTTATCGCCAGTGCCTCAGACGACACCACCATCATGGTGTGGCAGATTCCAGACTATACCCCCATGCGCAACA
TTACGGAACCTATCATCACACTTGAGGGCCACTCCAAGCGTGTGGGCATCCTCTCCTGGCACCCTACTGCCAGGAATGTCCTGCTCAGTG
CAGGTGGTGACAATGTGATCATCATCTGGAATGTGGGCACCGGGGAGGTGCTGCTGAGCCTGGATGATATGCACCCAGACGTCATCCACA
GTGTGTGCTGGAACAGCAACGGTAGCCTGCTAGCCACCACCTGCAAGGACAAGACCTTGCGCATCATTGACCCCAGAAAAGGCCAAGTGG
TGGCGGTGGGCTCGGTGGTGGCCGTGGGCTGGATCCGCTCCCGCAAGGCTGTGGACTGGCGCCTCTTTCGGAACATCTTCGTGGCCTGGT

>In-frame_ENST00000388767_ENST00000520179_TCGA-EB-A3HV-01A_CORO6_chr17_27945808_-_SLC20A2_chr8_42275485_length(amino acids)=266AA_start in transcript=2_stop in transcript=799
MSRRVVRQSKFRHVFGQAAKADQAYEDIRVSKVTWDSSFCAVNPKFLAIIVEAGGGGAFIVLPLAKTGRVDKNYPLVTGHTAPVLDIDWC
PHNDNVIASASDDTTIMVWQIPDYTPMRNITEPIITLEGHSKRVGILSWHPTARNVLLSAGGDNVIIIWNVGTGEVLLSLDDMHPDVIHS

--------------------------------------------------------------
>In-frame_ENST00000580212_ENST00000342228_TCGA-EB-A3HV-01A_CORO6_chr17_27945808_-_SLC20A2_chr8_42275485_length(transcript)=2205nt_BP=712nt
CTCCTCCCTCCCGCAGCTCACAGGACTAAGGACCAAAGGCATTTCTGGGCACTGAGATCCTACCTCTCTGCCTGCAGCTATGAGCAGACG
TGTGGTTCGGCAAAGCAAGTTCCGCCATGTGTTTGGGCAGGCAGCAAAGGCCGACCAGGCCTACGAGGACATCCGTGTGTCCAAGGTCAC
ATGGGACAGCTCCTTCTGTGCCGTCAACCCCAAATTCCTGGCCATTATTGTGGAGGCTGGAGGCGGGGGTGCCTTCATCGTCCTGCCTCT
GGCCAAGACAGGGCGAGTGGATAAGAACTACCCACTGGTCACTGGGCACACTGCCCCTGTGCTGGATATTGACTGGTGTCCACACAATGA
CAACGTTATCGCCAGTGCCTCAGACGACACCACCATCATGGTGTGGCAGATTCCAGACTATACCCCCATGCGCAACATTACGGAACCTAT
CATCACACTTGAGGGCCACTCCAAGCGTGTGGGCATCCTCTCCTGGCACCCTACTGCCAGGAATGTCCTGCTCAGTGCAGGTGGTGACAA
TGTGATCATCATCTGGAATGTGGGCACCGGGGAGGTGCTGCTGAGCCTGGATGATATGCACCCAGACGTCATCCACAGTGTGTGCTGGAA
CAGCAACGGTAGCCTGCTAGCCACCACCTGCAAGGACAAGACCTTGCGCATCATTGACCCCAGAAAAGGCCAAGTGGTGGCGGTGGGCTC
GGTGGTGGCCGTGGGCTGGATCCGCTCCCGCAAGGCTGTGGACTGGCGCCTCTTTCGGAACATCTTCGTGGCCTGGTTCGTGACCGTCCC
TGTGGCTGGGCTGTTCAGCGCTGCTGTCATGGCTCTTCTCATGTATGGGATCCTTCCATATGTGTGATTTGTCTTCTTCCAGCTGCAAAC
AGCTAAAGGGATGGTCTGGTGTTGGCGTGTGGGAGACATGTGTGCTCGTGCCGCACATACACATCCTGGCCGTGCACGGCTCTCTCATGA
CCAGCTCTCTGCCTCCCTTCCAGGAGGCTCCATCCCACACTGTTCACCCAGGCTGCGGAGACTCACCTTCCCGAGCTAACTTAACTACTG
TACATAATAATATGTATTAAACTGGTATCGTGGTGATATAATGTGGTGCAGTTACTTATATATTAAATATCTATTGTATCCATAGAATAG
GCAGCATTATTTCAAACATATTCAAGTTGGGAGTGGAGATCATTGCCTAGAAGTCAATATTCAATAAATCTTGTACATAACTATTTCGAT
GGCAAATGTTAAGCCTTCTAAAAGGAAAGTGTAGATTGGAAAATGATTTTTTTTCCAAATGATGTTTTTGCCTTCTAATATACTGTAAGG
TAATGAGCTTCAGAACAGGCAACCTGACCCTGCAGAGGTCGCGTGCTGTGGGATGACAGCGGGACGGGAGCTCACAAGTGCTTTCACTGA
AGATTTGTTCATATACTGTGTATTGATTGTTGTGTAATATATCATCATTGCTTTTGTAAATACGTAAAACTGTAATTTTTTAATGGTGTG
CTTCCCTTATACTTTTTTGATCAGAGAATTTTGGAAAGTACCAAAGAAGCAGGGGAATCATTGGCCAGTGTTACGTTTTCACATTGTCTG
TCTCCCACCCTCACTGATCACGCCTGCCCCAGAGCAGTGTGTGGCGGTGACACCGTCACCCAGCATGCGCCACGCCGTGGCTCCCACCAG
CAGTGCCACCGCCACCACACCCCAGATCCCACCCACCTTGCAGTGGCCTTTCCTTGTCATCAGAGTAGAGAATGCACAGGTGTTGGTGAG
GGCGTGTGGCTGAGCACTACATGTCAAGTCCAGAGTCAGTTTCTATCCCAATTCTCCCTGCAGCCTGAAGAACGGATCCTTGTCTCCAAT
GTCAGCACAAAGGAGGCTTTTTCTGTGCTTTGACATTCTAGCACTTCAGGGATGAGAGGGAGGGAGAATCCTGGATGCTGGATGGAGTAT
TTCTCTGAGGCCCACACAAAGCTGGACACCCCCAGGCTCTACTCCATCCCATTGGAGTCTCTTCTTTTTTTGATAGCGGGAGGGAGGAAG
TACGACTAATGTTGGAGCCTGAAACTATGGAAATGCTGCTAAAATTTTTATATTGACAAACATTTTCTTGGTACTTCATTGTCATTTTTC

>In-frame_ENST00000580212_ENST00000342228_TCGA-EB-A3HV-01A_CORO6_chr17_27945808_-_SLC20A2_chr8_42275485_length(amino acids)=269AA_start in transcript=67_stop in transcript=876
MPAAMSRRVVRQSKFRHVFGQAAKADQAYEDIRVSKVTWDSSFCAVNPKFLAIIVEAGGGGAFIVLPLAKTGRVDKNYPLVTGHTAPVLD
IDWCPHNDNVIASASDDTTIMVWQIPDYTPMRNITEPIITLEGHSKRVGILSWHPTARNVLLSAGGDNVIIIWNVGTGEVLLSLDDMHPD

--------------------------------------------------------------
>In-frame_ENST00000580212_ENST00000520262_TCGA-EB-A3HV-01A_CORO6_chr17_27945808_-_SLC20A2_chr8_42275485_length(transcript)=1216nt_BP=712nt
CTCCTCCCTCCCGCAGCTCACAGGACTAAGGACCAAAGGCATTTCTGGGCACTGAGATCCTACCTCTCTGCCTGCAGCTATGAGCAGACG
TGTGGTTCGGCAAAGCAAGTTCCGCCATGTGTTTGGGCAGGCAGCAAAGGCCGACCAGGCCTACGAGGACATCCGTGTGTCCAAGGTCAC
ATGGGACAGCTCCTTCTGTGCCGTCAACCCCAAATTCCTGGCCATTATTGTGGAGGCTGGAGGCGGGGGTGCCTTCATCGTCCTGCCTCT
GGCCAAGACAGGGCGAGTGGATAAGAACTACCCACTGGTCACTGGGCACACTGCCCCTGTGCTGGATATTGACTGGTGTCCACACAATGA
CAACGTTATCGCCAGTGCCTCAGACGACACCACCATCATGGTGTGGCAGATTCCAGACTATACCCCCATGCGCAACATTACGGAACCTAT
CATCACACTTGAGGGCCACTCCAAGCGTGTGGGCATCCTCTCCTGGCACCCTACTGCCAGGAATGTCCTGCTCAGTGCAGGTGGTGACAA
TGTGATCATCATCTGGAATGTGGGCACCGGGGAGGTGCTGCTGAGCCTGGATGATATGCACCCAGACGTCATCCACAGTGTGTGCTGGAA
CAGCAACGGTAGCCTGCTAGCCACCACCTGCAAGGACAAGACCTTGCGCATCATTGACCCCAGAAAAGGCCAAGTGGTGGCGGTGGGCTC
GGTGGTGGCCGTGGGCTGGATCCGCTCCCGCAAGGCTGTGGACTGGCGCCTCTTTCGGAACATCTTCGTGGCCTGGTTCGTGACCGTCCC
TGTGGCTGGGCTGTTCAGCGCTGCTGTCATGGCTCTTCTCATGTATGGGATCCTTCCATATGTGTGATTTGTCTTCTTCCAGCTGCAAAC
AGCTAAAGGGATGGTCTGGTGTTGGCGTGTGGGAGACATGTGTGCTCGTGCCGCACATACACATCCTGGCCGTGCACGGCTCTCTCATGA
CCAGCTCTCTGCCTCCCTTCCAGGAGGCTCCATCCCACACTGTTCACCCAGGCTGCGGAGACTCACCTTCCCGAGCTAACTTAACTACTG
TACATAATAATATGTATTAAACTGGTATCGTGGTGATATAATGTGGTGCAGTTACTTATATATTAAATATCTATTGTATCCATAGAATAG

>In-frame_ENST00000580212_ENST00000520262_TCGA-EB-A3HV-01A_CORO6_chr17_27945808_-_SLC20A2_chr8_42275485_length(amino acids)=269AA_start in transcript=67_stop in transcript=876
MPAAMSRRVVRQSKFRHVFGQAAKADQAYEDIRVSKVTWDSSFCAVNPKFLAIIVEAGGGGAFIVLPLAKTGRVDKNYPLVTGHTAPVLD
IDWCPHNDNVIASASDDTTIMVWQIPDYTPMRNITEPIITLEGHSKRVGILSWHPTARNVLLSAGGDNVIIIWNVGTGEVLLSLDDMHPD

--------------------------------------------------------------
>In-frame_ENST00000580212_ENST00000520179_TCGA-EB-A3HV-01A_CORO6_chr17_27945808_-_SLC20A2_chr8_42275485_length(transcript)=877nt_BP=712nt
CTCCTCCCTCCCGCAGCTCACAGGACTAAGGACCAAAGGCATTTCTGGGCACTGAGATCCTACCTCTCTGCCTGCAGCTATGAGCAGACG
TGTGGTTCGGCAAAGCAAGTTCCGCCATGTGTTTGGGCAGGCAGCAAAGGCCGACCAGGCCTACGAGGACATCCGTGTGTCCAAGGTCAC
ATGGGACAGCTCCTTCTGTGCCGTCAACCCCAAATTCCTGGCCATTATTGTGGAGGCTGGAGGCGGGGGTGCCTTCATCGTCCTGCCTCT
GGCCAAGACAGGGCGAGTGGATAAGAACTACCCACTGGTCACTGGGCACACTGCCCCTGTGCTGGATATTGACTGGTGTCCACACAATGA
CAACGTTATCGCCAGTGCCTCAGACGACACCACCATCATGGTGTGGCAGATTCCAGACTATACCCCCATGCGCAACATTACGGAACCTAT
CATCACACTTGAGGGCCACTCCAAGCGTGTGGGCATCCTCTCCTGGCACCCTACTGCCAGGAATGTCCTGCTCAGTGCAGGTGGTGACAA
TGTGATCATCATCTGGAATGTGGGCACCGGGGAGGTGCTGCTGAGCCTGGATGATATGCACCCAGACGTCATCCACAGTGTGTGCTGGAA
CAGCAACGGTAGCCTGCTAGCCACCACCTGCAAGGACAAGACCTTGCGCATCATTGACCCCAGAAAAGGCCAAGTGGTGGCGGTGGGCTC
GGTGGTGGCCGTGGGCTGGATCCGCTCCCGCAAGGCTGTGGACTGGCGCCTCTTTCGGAACATCTTCGTGGCCTGGTTCGTGACCGTCCC

>In-frame_ENST00000580212_ENST00000520179_TCGA-EB-A3HV-01A_CORO6_chr17_27945808_-_SLC20A2_chr8_42275485_length(amino acids)=270AA_start in transcript=67_stop in transcript=876
MPAAMSRRVVRQSKFRHVFGQAAKADQAYEDIRVSKVTWDSSFCAVNPKFLAIIVEAGGGGAFIVLPLAKTGRVDKNYPLVTGHTAPVLD
IDWCPHNDNVIASASDDTTIMVWQIPDYTPMRNITEPIITLEGHSKRVGILSWHPTARNVLLSAGGDNVIIIWNVGTGEVLLSLDDMHPD
VIHSVCWNSNGSLLATTCKDKTLRIIDPRKGQVVAVGSVVAVGWIRSRKAVDWRLFRNIFVAWFVTVPVAGLFSAAVMALLMYGILPYVX

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>In-frame_ENST00000584969_ENST00000342228_TCGA-EB-A3HV-01A_CORO6_chr17_27945808_-_SLC20A2_chr8_42275485_length(transcript)=2126nt_BP=633nt
ATGAGCAGACGTGTGGTTCGGCAAAGCAAGTTCCGCCATGTGTTTGGGCAGGCAGCAAAGGCCGACCAGGCCTACGAGGACATCCGTGTG
TCCAAGGTCACATGGGACAGCTCCTTCTGTGCCGTCAACCCCAAATTCCTGGCCATTATTGTGGAGGCTGGAGGCGGGGGTGCCTTCATC
GTCCTGCCTCTGGCCAAGACAGGGCGAGTGGATAAGAACTACCCACTGGTCACTGGGCACACTGCCCCTGTGCTGGATATTGACTGGTGT
CCACACAATGACAACGTTATCGCCAGTGCCTCAGACGACACCACCATCATGGTGTGGCAGATTCCAGACTATACCCCCATGCGCAACATT
ACGGAACCTATCATCACACTTGAGGGCCACTCCAAGCGTGTGGGCATCCTCTCCTGGCACCCTACTGCCAGGAATGTCCTGCTCAGTGCA
GGTGGTGACAATGTGATCATCATCTGGAATGTGGGCACCGGGGAGGTGCTGCTGAGCCTGGATGATATGCACCCAGACGTCATCCACAGT
GTGTGCTGGAACAGCAACGGTAGCCTGCTAGCCACCACCTGCAAGGACAAGACCTTGCGCATCATTGACCCCAGAAAAGGCCAAGTGGTG
GCGGTGGGCTCGGTGGTGGCCGTGGGCTGGATCCGCTCCCGCAAGGCTGTGGACTGGCGCCTCTTTCGGAACATCTTCGTGGCCTGGTTC
GTGACCGTCCCTGTGGCTGGGCTGTTCAGCGCTGCTGTCATGGCTCTTCTCATGTATGGGATCCTTCCATATGTGTGATTTGTCTTCTTC
CAGCTGCAAACAGCTAAAGGGATGGTCTGGTGTTGGCGTGTGGGAGACATGTGTGCTCGTGCCGCACATACACATCCTGGCCGTGCACGG
CTCTCTCATGACCAGCTCTCTGCCTCCCTTCCAGGAGGCTCCATCCCACACTGTTCACCCAGGCTGCGGAGACTCACCTTCCCGAGCTAA
CTTAACTACTGTACATAATAATATGTATTAAACTGGTATCGTGGTGATATAATGTGGTGCAGTTACTTATATATTAAATATCTATTGTAT
CCATAGAATAGGCAGCATTATTTCAAACATATTCAAGTTGGGAGTGGAGATCATTGCCTAGAAGTCAATATTCAATAAATCTTGTACATA
ACTATTTCGATGGCAAATGTTAAGCCTTCTAAAAGGAAAGTGTAGATTGGAAAATGATTTTTTTTCCAAATGATGTTTTTGCCTTCTAAT
ATACTGTAAGGTAATGAGCTTCAGAACAGGCAACCTGACCCTGCAGAGGTCGCGTGCTGTGGGATGACAGCGGGACGGGAGCTCACAAGT
GCTTTCACTGAAGATTTGTTCATATACTGTGTATTGATTGTTGTGTAATATATCATCATTGCTTTTGTAAATACGTAAAACTGTAATTTT
TTAATGGTGTGCTTCCCTTATACTTTTTTGATCAGAGAATTTTGGAAAGTACCAAAGAAGCAGGGGAATCATTGGCCAGTGTTACGTTTT
CACATTGTCTGTCTCCCACCCTCACTGATCACGCCTGCCCCAGAGCAGTGTGTGGCGGTGACACCGTCACCCAGCATGCGCCACGCCGTG
GCTCCCACCAGCAGTGCCACCGCCACCACACCCCAGATCCCACCCACCTTGCAGTGGCCTTTCCTTGTCATCAGAGTAGAGAATGCACAG
GTGTTGGTGAGGGCGTGTGGCTGAGCACTACATGTCAAGTCCAGAGTCAGTTTCTATCCCAATTCTCCCTGCAGCCTGAAGAACGGATCC
TTGTCTCCAATGTCAGCACAAAGGAGGCTTTTTCTGTGCTTTGACATTCTAGCACTTCAGGGATGAGAGGGAGGGAGAATCCTGGATGCT
GGATGGAGTATTTCTCTGAGGCCCACACAAAGCTGGACACCCCCAGGCTCTACTCCATCCCATTGGAGTCTCTTCTTTTTTTGATAGCGG
GAGGGAGGAAGTACGACTAATGTTGGAGCCTGAAACTATGGAAATGCTGCTAAAATTTTTATATTGACAAACATTTTCTTGGTACTTCAT

>In-frame_ENST00000584969_ENST00000342228_TCGA-EB-A3HV-01A_CORO6_chr17_27945808_-_SLC20A2_chr8_42275485_length(amino acids)=265AA_start in transcript=0_stop in transcript=797
MSRRVVRQSKFRHVFGQAAKADQAYEDIRVSKVTWDSSFCAVNPKFLAIIVEAGGGGAFIVLPLAKTGRVDKNYPLVTGHTAPVLDIDWC
PHNDNVIASASDDTTIMVWQIPDYTPMRNITEPIITLEGHSKRVGILSWHPTARNVLLSAGGDNVIIIWNVGTGEVLLSLDDMHPDVIHS

--------------------------------------------------------------
>In-frame_ENST00000584969_ENST00000520262_TCGA-EB-A3HV-01A_CORO6_chr17_27945808_-_SLC20A2_chr8_42275485_length(transcript)=1137nt_BP=633nt
ATGAGCAGACGTGTGGTTCGGCAAAGCAAGTTCCGCCATGTGTTTGGGCAGGCAGCAAAGGCCGACCAGGCCTACGAGGACATCCGTGTG
TCCAAGGTCACATGGGACAGCTCCTTCTGTGCCGTCAACCCCAAATTCCTGGCCATTATTGTGGAGGCTGGAGGCGGGGGTGCCTTCATC
GTCCTGCCTCTGGCCAAGACAGGGCGAGTGGATAAGAACTACCCACTGGTCACTGGGCACACTGCCCCTGTGCTGGATATTGACTGGTGT
CCACACAATGACAACGTTATCGCCAGTGCCTCAGACGACACCACCATCATGGTGTGGCAGATTCCAGACTATACCCCCATGCGCAACATT
ACGGAACCTATCATCACACTTGAGGGCCACTCCAAGCGTGTGGGCATCCTCTCCTGGCACCCTACTGCCAGGAATGTCCTGCTCAGTGCA
GGTGGTGACAATGTGATCATCATCTGGAATGTGGGCACCGGGGAGGTGCTGCTGAGCCTGGATGATATGCACCCAGACGTCATCCACAGT
GTGTGCTGGAACAGCAACGGTAGCCTGCTAGCCACCACCTGCAAGGACAAGACCTTGCGCATCATTGACCCCAGAAAAGGCCAAGTGGTG
GCGGTGGGCTCGGTGGTGGCCGTGGGCTGGATCCGCTCCCGCAAGGCTGTGGACTGGCGCCTCTTTCGGAACATCTTCGTGGCCTGGTTC
GTGACCGTCCCTGTGGCTGGGCTGTTCAGCGCTGCTGTCATGGCTCTTCTCATGTATGGGATCCTTCCATATGTGTGATTTGTCTTCTTC
CAGCTGCAAACAGCTAAAGGGATGGTCTGGTGTTGGCGTGTGGGAGACATGTGTGCTCGTGCCGCACATACACATCCTGGCCGTGCACGG
CTCTCTCATGACCAGCTCTCTGCCTCCCTTCCAGGAGGCTCCATCCCACACTGTTCACCCAGGCTGCGGAGACTCACCTTCCCGAGCTAA
CTTAACTACTGTACATAATAATATGTATTAAACTGGTATCGTGGTGATATAATGTGGTGCAGTTACTTATATATTAAATATCTATTGTAT

>In-frame_ENST00000584969_ENST00000520262_TCGA-EB-A3HV-01A_CORO6_chr17_27945808_-_SLC20A2_chr8_42275485_length(amino acids)=265AA_start in transcript=0_stop in transcript=797
MSRRVVRQSKFRHVFGQAAKADQAYEDIRVSKVTWDSSFCAVNPKFLAIIVEAGGGGAFIVLPLAKTGRVDKNYPLVTGHTAPVLDIDWC
PHNDNVIASASDDTTIMVWQIPDYTPMRNITEPIITLEGHSKRVGILSWHPTARNVLLSAGGDNVIIIWNVGTGEVLLSLDDMHPDVIHS

--------------------------------------------------------------
>In-frame_ENST00000584969_ENST00000520179_TCGA-EB-A3HV-01A_CORO6_chr17_27945808_-_SLC20A2_chr8_42275485_length(transcript)=798nt_BP=633nt
ATGAGCAGACGTGTGGTTCGGCAAAGCAAGTTCCGCCATGTGTTTGGGCAGGCAGCAAAGGCCGACCAGGCCTACGAGGACATCCGTGTG
TCCAAGGTCACATGGGACAGCTCCTTCTGTGCCGTCAACCCCAAATTCCTGGCCATTATTGTGGAGGCTGGAGGCGGGGGTGCCTTCATC
GTCCTGCCTCTGGCCAAGACAGGGCGAGTGGATAAGAACTACCCACTGGTCACTGGGCACACTGCCCCTGTGCTGGATATTGACTGGTGT
CCACACAATGACAACGTTATCGCCAGTGCCTCAGACGACACCACCATCATGGTGTGGCAGATTCCAGACTATACCCCCATGCGCAACATT
ACGGAACCTATCATCACACTTGAGGGCCACTCCAAGCGTGTGGGCATCCTCTCCTGGCACCCTACTGCCAGGAATGTCCTGCTCAGTGCA
GGTGGTGACAATGTGATCATCATCTGGAATGTGGGCACCGGGGAGGTGCTGCTGAGCCTGGATGATATGCACCCAGACGTCATCCACAGT
GTGTGCTGGAACAGCAACGGTAGCCTGCTAGCCACCACCTGCAAGGACAAGACCTTGCGCATCATTGACCCCAGAAAAGGCCAAGTGGTG
GCGGTGGGCTCGGTGGTGGCCGTGGGCTGGATCCGCTCCCGCAAGGCTGTGGACTGGCGCCTCTTTCGGAACATCTTCGTGGCCTGGTTC

>In-frame_ENST00000584969_ENST00000520179_TCGA-EB-A3HV-01A_CORO6_chr17_27945808_-_SLC20A2_chr8_42275485_length(amino acids)=265AA_start in transcript=0_stop in transcript=797
MSRRVVRQSKFRHVFGQAAKADQAYEDIRVSKVTWDSSFCAVNPKFLAIIVEAGGGGAFIVLPLAKTGRVDKNYPLVTGHTAPVLDIDWC
PHNDNVIASASDDTTIMVWQIPDYTPMRNITEPIITLEGHSKRVGILSWHPTARNVLLSAGGDNVIIIWNVGTGEVLLSLDDMHPDVIHS

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Fusion Gene PPI Analysis for CORO6-SLC20A2


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page.


check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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Related Drugs for CORO6-SLC20A2


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.8 2021-05-08)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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Related Diseases for CORO6-SLC20A2


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource
TgeneSLC20A2C4551624Idiopathic basal ganglia calcification 19CTD_human;GENOMICS_ENGLAND;UNIPROT
TgeneSLC20A2C0393590Fahr's syndrome (disorder)2GENOMICS_ENGLAND;ORPHANET
TgeneSLC20A2C0004782Basal Ganglia Diseases1CTD_human
TgeneSLC20A2C0006663Calcinosis1CTD_human
TgeneSLC20A2C0013421Dystonia1GENOMICS_ENGLAND
TgeneSLC20A2C0015371Extrapyramidal Disorders1CTD_human
TgeneSLC20A2C0263628Tumoral calcinosis1CTD_human
TgeneSLC20A2C0521174Microcalcification1CTD_human
TgeneSLC20A2C0750951Lenticulostriate Disorders1CTD_human