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Center for Computational Systems Medicine
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Fusion Gene Summary

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Fusion Gene ORF analysis

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Fusion Genomic Features

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Fusion Protein Features

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Fusion Gene Sequence

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Fusion Gene PPI analysis

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Related Drugs

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Related Diseases

Fusion gene:CPT1A-RNFT1 (FusionGDB2 ID:19241)

Fusion Gene Summary for CPT1A-RNFT1

check button Fusion gene summary
Fusion gene informationFusion gene name: CPT1A-RNFT1
Fusion gene ID: 19241
HgeneTgene
Gene symbol

CPT1A

RNFT1

Gene ID

1374

51136

Gene namecarnitine palmitoyltransferase 1Aring finger protein, transmembrane 1
SynonymsCPT1|CPT1-L|L-CPT1PTD016
Cytomap

11q13.3

17q23.1

Type of geneprotein-codingprotein-coding
Descriptioncarnitine O-palmitoyltransferase 1, liver isoformCPT ICPTI-Lcarnitine O-palmitoyltransferase I, liver isoformcarnitine palmitoyltransferase 1A (liver)carnitine palmitoyltransferase I, liverE3 ubiquitin-protein ligase RNFT1RING finger and transmembrane domain-containing protein 1
Modification date2020031520200313
UniProtAcc

P50416

.
Ensembl transtripts involved in fusion geneENST00000540367, ENST00000376618, 
ENST00000265641, ENST00000539743, 
ENST00000537756, ENST00000538994, 
ENST00000305783, ENST00000442346, 
Fusion gene scores* DoF score25 X 23 X 12=69008 X 7 X 6=336
# samples 3212
** MAII scorelog2(32/6900*10)=-4.43045255166553
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0		log2(12/336*10)=-1.48542682717024
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
Context

PubMed: CPT1A [Title/Abstract] AND RNFT1 [Title/Abstract] AND fusion [Title/Abstract]

Most frequent breakpointCPT1A(68527037)-RNFT1(58031507), # samples:3
Anticipated loss of major functional domain due to fusion event.CPT1A-RNFT1 seems lost the major protein functional domain in Hgene partner, which is a cell metabolism gene due to the frame-shifted ORF.
CPT1A-RNFT1 seems lost the major protein functional domain in Hgene partner, which is a essential gene due to the frame-shifted ORF.
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
HgeneCPT1A

GO:0001676

long-chain fatty acid metabolic process

11350182

HgeneCPT1A

GO:0009437

carnitine metabolic process

11350182

TgeneRNFT1

GO:0051865

protein autoubiquitination

27485036


check buttonFusion gene breakpoints across CPT1A (5'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.

check buttonFusion gene breakpoints across RNFT1 (3'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.

check button Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0)
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
SourceDiseaseSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
ChimerDB4ESCATCGA-L5-A8NH-01ACPT1Achr11

68527037

-RNFT1chr17

58031507

-
ChimerDB4ESCATCGA-L5-A8NHCPT1Achr11

68527036

-RNFT1chr17

58031507

-
ChimerDB4ESCATCGA-L5-A8NHCPT1Achr11

68527036

-RNFT1chr17

58030472

-
ChimerDB4ESCATCGA-L5-A8NHCPT1Achr11

68527036

-RNFT1chr17

58031507

-
ChimerDB4ESCATCGA-L5-A8NHCPT1Achr11

68527036

-RNFT1chr17

58030472

-
ChimerDB4ESCATCGA-L5-A8NHCPT1Achr11

68527037

-RNFT1chr17

58031507

-
ChimerDB4ESCATCGA-L5-A8NHCPT1Achr11

68527037

-RNFT1chr17

58030472

-
ChimerDB4ESCATCGA-L5-A8NH-01ACPT1Achr11

68527037

-RNFT1chr17

58031507

-


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Fusion Gene ORF analysis for CPT1A-RNFT1

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
In-frameENST00000540367ENST00000305783CPT1Achr11

68527037

-RNFT1chr17

58031507

-
5CDS-3UTRENST00000540367ENST00000442346CPT1Achr11

68527037

-RNFT1chr17

58031507

-
Frame-shiftENST00000376618ENST00000305783CPT1Achr11

68527037

-RNFT1chr17

58031507

-
5CDS-3UTRENST00000376618ENST00000442346CPT1Achr11

68527037

-RNFT1chr17

58031507

-
Frame-shiftENST00000265641ENST00000305783CPT1Achr11

68527037

-RNFT1chr17

58031507

-
5CDS-3UTRENST00000265641ENST00000442346CPT1Achr11

68527037

-RNFT1chr17

58031507

-
In-frameENST00000539743ENST00000305783CPT1Achr11

68527037

-RNFT1chr17

58031507

-
5CDS-3UTRENST00000539743ENST00000442346CPT1Achr11

68527037

-RNFT1chr17

58031507

-
intron-3CDSENST00000537756ENST00000305783CPT1Achr11

68527037

-RNFT1chr17

58031507

-
intron-3UTRENST00000537756ENST00000442346CPT1Achr11

68527037

-RNFT1chr17

58031507

-
intron-3CDSENST00000538994ENST00000305783CPT1Achr11

68527037

-RNFT1chr17

58031507

-
intron-3UTRENST00000538994ENST00000442346CPT1Achr11

68527037

-RNFT1chr17

58031507

-
In-frameENST00000540367ENST00000305783CPT1Achr11

68527036

-RNFT1chr17

58031507

-
5CDS-3UTRENST00000540367ENST00000442346CPT1Achr11

68527036

-RNFT1chr17

58031507

-
Frame-shiftENST00000376618ENST00000305783CPT1Achr11

68527036

-RNFT1chr17

58031507

-
5CDS-3UTRENST00000376618ENST00000442346CPT1Achr11

68527036

-RNFT1chr17

58031507

-
Frame-shiftENST00000265641ENST00000305783CPT1Achr11

68527036

-RNFT1chr17

58031507

-
5CDS-3UTRENST00000265641ENST00000442346CPT1Achr11

68527036

-RNFT1chr17

58031507

-
In-frameENST00000539743ENST00000305783CPT1Achr11

68527036

-RNFT1chr17

58031507

-
5CDS-3UTRENST00000539743ENST00000442346CPT1Achr11

68527036

-RNFT1chr17

58031507

-
intron-3CDSENST00000537756ENST00000305783CPT1Achr11

68527036

-RNFT1chr17

58031507

-
intron-3UTRENST00000537756ENST00000442346CPT1Achr11

68527036

-RNFT1chr17

58031507

-
intron-3CDSENST00000538994ENST00000305783CPT1Achr11

68527036

-RNFT1chr17

58031507

-
intron-3UTRENST00000538994ENST00000442346CPT1Achr11

68527036

-RNFT1chr17

58031507

-
Frame-shiftENST00000540367ENST00000305783CPT1Achr11

68527036

-RNFT1chr17

58030472

-
5CDS-3UTRENST00000540367ENST00000442346CPT1Achr11

68527036

-RNFT1chr17

58030472

-
In-frameENST00000376618ENST00000305783CPT1Achr11

68527036

-RNFT1chr17

58030472

-
5CDS-3UTRENST00000376618ENST00000442346CPT1Achr11

68527036

-RNFT1chr17

58030472

-
In-frameENST00000265641ENST00000305783CPT1Achr11

68527036

-RNFT1chr17

58030472

-
5CDS-3UTRENST00000265641ENST00000442346CPT1Achr11

68527036

-RNFT1chr17

58030472

-
Frame-shiftENST00000539743ENST00000305783CPT1Achr11

68527036

-RNFT1chr17

58030472

-
5CDS-3UTRENST00000539743ENST00000442346CPT1Achr11

68527036

-RNFT1chr17

58030472

-
intron-3CDSENST00000537756ENST00000305783CPT1Achr11

68527036

-RNFT1chr17

58030472

-
intron-3UTRENST00000537756ENST00000442346CPT1Achr11

68527036

-RNFT1chr17

58030472

-
intron-3CDSENST00000538994ENST00000305783CPT1Achr11

68527036

-RNFT1chr17

58030472

-
intron-3UTRENST00000538994ENST00000442346CPT1Achr11

68527036

-RNFT1chr17

58030472

-
Frame-shiftENST00000540367ENST00000305783CPT1Achr11

68527037

-RNFT1chr17

58030472

-
5CDS-3UTRENST00000540367ENST00000442346CPT1Achr11

68527037

-RNFT1chr17

58030472

-
In-frameENST00000376618ENST00000305783CPT1Achr11

68527037

-RNFT1chr17

58030472

-
5CDS-3UTRENST00000376618ENST00000442346CPT1Achr11

68527037

-RNFT1chr17

58030472

-
In-frameENST00000265641ENST00000305783CPT1Achr11

68527037

-RNFT1chr17

58030472

-
5CDS-3UTRENST00000265641ENST00000442346CPT1Achr11

68527037

-RNFT1chr17

58030472

-
Frame-shiftENST00000539743ENST00000305783CPT1Achr11

68527037

-RNFT1chr17

58030472

-
5CDS-3UTRENST00000539743ENST00000442346CPT1Achr11

68527037

-RNFT1chr17

58030472

-
intron-3CDSENST00000537756ENST00000305783CPT1Achr11

68527037

-RNFT1chr17

58030472

-
intron-3UTRENST00000537756ENST00000442346CPT1Achr11

68527037

-RNFT1chr17

58030472

-
intron-3CDSENST00000538994ENST00000305783CPT1Achr11

68527037

-RNFT1chr17

58030472

-
intron-3UTRENST00000538994ENST00000442346CPT1Achr11

68527037

-RNFT1chr17

58030472

-

check buttonORFfinder result based on the fusion transcript sequence of in-frame fusion genes.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandSeq length
(transcript)		BP loci
(transcript)		Predicted start
(transcript)		Predicted stop
(transcript)		Seq length
(amino acids)
ENST00000540367CPT1Achr1168527037-ENST00000305783RNFT1chr1758031507-32382264232500825
ENST00000539743CPT1Achr1168527037-ENST00000305783RNFT1chr1758031507-32382264232500825
ENST00000540367CPT1Achr1168527036-ENST00000305783RNFT1chr1758031507-32382264232500825
ENST00000539743CPT1Achr1168527036-ENST00000305783RNFT1chr1758031507-32382264232500825
ENST00000376618CPT1Achr1168527036-ENST00000305783RNFT1chr1758030472-327724051492539796
ENST00000265641CPT1Achr1168527036-ENST00000305783RNFT1chr1758030472-326223901342524796
ENST00000376618CPT1Achr1168527037-ENST00000305783RNFT1chr1758030472-327724051492539796
ENST00000265641CPT1Achr1168527037-ENST00000305783RNFT1chr1758030472-326223901342524796

check buttonDeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandNo-coding scoreCoding score
ENST00000540367ENST00000305783CPT1Achr1168527037-RNFT1chr1758031507-0.000435680.99956435
ENST00000539743ENST00000305783CPT1Achr1168527037-RNFT1chr1758031507-0.000435680.99956435
ENST00000540367ENST00000305783CPT1Achr1168527036-RNFT1chr1758031507-0.000435680.99956435
ENST00000539743ENST00000305783CPT1Achr1168527036-RNFT1chr1758031507-0.000435680.99956435
ENST00000376618ENST00000305783CPT1Achr1168527036-RNFT1chr1758030472-0.0007034820.99929655
ENST00000265641ENST00000305783CPT1Achr1168527036-RNFT1chr1758030472-0.0006789160.9993211
ENST00000376618ENST00000305783CPT1Achr1168527037-RNFT1chr1758030472-0.0007034820.99929655
ENST00000265641ENST00000305783CPT1Achr1168527037-RNFT1chr1758030472-0.0006789160.9993211

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Fusion Genomic Features for CPT1A-RNFT1


check buttonFusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints.
HgeneHchrHbpHstrandTgeneTchrTbpTstrand1-pp (fusion gene breakpoint)

check buttonDistribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page.

check buttonDistribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page.

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Fusion Protein Features for CPT1A-RNFT1


check button Go to

FGviewer for the breakpoints of chr11:68527037-chr17:58031507

.
- FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels.
FGviewer

check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
CPT1A

P50416

.
FUNCTION: Catalyzes the transfer of the acyl group of long-chain fatty acid-CoA conjugates onto carnitine, an essential step for the mitochondrial uptake of long-chain fatty acids and their subsequent beta-oxidation in the mitochondrion (PubMed:9691089, PubMed:11350182, PubMed:14517221). Plays an important role in hepatic triglyceride metabolism (By similarity). {ECO:0000250|UniProtKB:P32198, ECO:0000269|PubMed:11350182, ECO:0000269|PubMed:14517221, ECO:0000269|PubMed:9691089}.FUNCTION: Might normally function as a transcriptional repressor. EWS-fusion-proteins (EFPS) may play a role in the tumorigenic process. They may disturb gene expression by mimicking, or interfering with the normal function of CTD-POLII within the transcription initiation complex. They may also contribute to an aberrant activation of the fusion protein target genes.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page


* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
HgeneCPT1Achr11:68527036chr17:58030472ENST00000265641-1819555_567745.0774.0RegionCoenzyme A binding
HgeneCPT1Achr11:68527036chr17:58030472ENST00000376618-1819555_567745.0757.0RegionCoenzyme A binding
HgeneCPT1Achr11:68527036chr17:58030472ENST00000539743-1718555_567745.0774.0RegionCoenzyme A binding
HgeneCPT1Achr11:68527036chr17:58030472ENST00000540367-1718555_567745.0757.0RegionCoenzyme A binding
HgeneCPT1Achr11:68527036chr17:58031507ENST00000265641-1819555_567745.0774.0RegionCoenzyme A binding
HgeneCPT1Achr11:68527036chr17:58031507ENST00000376618-1819555_567745.0757.0RegionCoenzyme A binding
HgeneCPT1Achr11:68527036chr17:58031507ENST00000539743-1718555_567745.0774.0RegionCoenzyme A binding
HgeneCPT1Achr11:68527036chr17:58031507ENST00000540367-1718555_567745.0757.0RegionCoenzyme A binding
HgeneCPT1Achr11:68527037chr17:58030472ENST00000265641-1819555_567745.0774.0RegionCoenzyme A binding
HgeneCPT1Achr11:68527037chr17:58030472ENST00000376618-1819555_567745.0757.0RegionCoenzyme A binding
HgeneCPT1Achr11:68527037chr17:58030472ENST00000539743-1718555_567745.0774.0RegionCoenzyme A binding
HgeneCPT1Achr11:68527037chr17:58030472ENST00000540367-1718555_567745.0757.0RegionCoenzyme A binding
HgeneCPT1Achr11:68527037chr17:58031507ENST00000265641-1819555_567745.0774.0RegionCoenzyme A binding
HgeneCPT1Achr11:68527037chr17:58031507ENST00000376618-1819555_567745.0757.0RegionCoenzyme A binding
HgeneCPT1Achr11:68527037chr17:58031507ENST00000539743-1718555_567745.0774.0RegionCoenzyme A binding
HgeneCPT1Achr11:68527037chr17:58031507ENST00000540367-1718555_567745.0757.0RegionCoenzyme A binding
HgeneCPT1Achr11:68527036chr17:58030472ENST00000265641-18192_47745.0774.0Topological domainCytoplasmic
HgeneCPT1Achr11:68527036chr17:58030472ENST00000265641-181974_102745.0774.0Topological domainMitochondrial intermembrane
HgeneCPT1Achr11:68527036chr17:58030472ENST00000376618-18192_47745.0757.0Topological domainCytoplasmic
HgeneCPT1Achr11:68527036chr17:58030472ENST00000376618-181974_102745.0757.0Topological domainMitochondrial intermembrane
HgeneCPT1Achr11:68527036chr17:58030472ENST00000539743-17182_47745.0774.0Topological domainCytoplasmic
HgeneCPT1Achr11:68527036chr17:58030472ENST00000539743-171874_102745.0774.0Topological domainMitochondrial intermembrane
HgeneCPT1Achr11:68527036chr17:58030472ENST00000540367-17182_47745.0757.0Topological domainCytoplasmic
HgeneCPT1Achr11:68527036chr17:58030472ENST00000540367-171874_102745.0757.0Topological domainMitochondrial intermembrane
HgeneCPT1Achr11:68527036chr17:58031507ENST00000265641-18192_47745.0774.0Topological domainCytoplasmic
HgeneCPT1Achr11:68527036chr17:58031507ENST00000265641-181974_102745.0774.0Topological domainMitochondrial intermembrane
HgeneCPT1Achr11:68527036chr17:58031507ENST00000376618-18192_47745.0757.0Topological domainCytoplasmic
HgeneCPT1Achr11:68527036chr17:58031507ENST00000376618-181974_102745.0757.0Topological domainMitochondrial intermembrane
HgeneCPT1Achr11:68527036chr17:58031507ENST00000539743-17182_47745.0774.0Topological domainCytoplasmic
HgeneCPT1Achr11:68527036chr17:58031507ENST00000539743-171874_102745.0774.0Topological domainMitochondrial intermembrane
HgeneCPT1Achr11:68527036chr17:58031507ENST00000540367-17182_47745.0757.0Topological domainCytoplasmic
HgeneCPT1Achr11:68527036chr17:58031507ENST00000540367-171874_102745.0757.0Topological domainMitochondrial intermembrane
HgeneCPT1Achr11:68527037chr17:58030472ENST00000265641-18192_47745.0774.0Topological domainCytoplasmic
HgeneCPT1Achr11:68527037chr17:58030472ENST00000265641-181974_102745.0774.0Topological domainMitochondrial intermembrane
HgeneCPT1Achr11:68527037chr17:58030472ENST00000376618-18192_47745.0757.0Topological domainCytoplasmic
HgeneCPT1Achr11:68527037chr17:58030472ENST00000376618-181974_102745.0757.0Topological domainMitochondrial intermembrane
HgeneCPT1Achr11:68527037chr17:58030472ENST00000539743-17182_47745.0774.0Topological domainCytoplasmic
HgeneCPT1Achr11:68527037chr17:58030472ENST00000539743-171874_102745.0774.0Topological domainMitochondrial intermembrane
HgeneCPT1Achr11:68527037chr17:58030472ENST00000540367-17182_47745.0757.0Topological domainCytoplasmic
HgeneCPT1Achr11:68527037chr17:58030472ENST00000540367-171874_102745.0757.0Topological domainMitochondrial intermembrane
HgeneCPT1Achr11:68527037chr17:58031507ENST00000265641-18192_47745.0774.0Topological domainCytoplasmic
HgeneCPT1Achr11:68527037chr17:58031507ENST00000265641-181974_102745.0774.0Topological domainMitochondrial intermembrane
HgeneCPT1Achr11:68527037chr17:58031507ENST00000376618-18192_47745.0757.0Topological domainCytoplasmic
HgeneCPT1Achr11:68527037chr17:58031507ENST00000376618-181974_102745.0757.0Topological domainMitochondrial intermembrane
HgeneCPT1Achr11:68527037chr17:58031507ENST00000539743-17182_47745.0774.0Topological domainCytoplasmic
HgeneCPT1Achr11:68527037chr17:58031507ENST00000539743-171874_102745.0774.0Topological domainMitochondrial intermembrane
HgeneCPT1Achr11:68527037chr17:58031507ENST00000540367-17182_47745.0757.0Topological domainCytoplasmic
HgeneCPT1Achr11:68527037chr17:58031507ENST00000540367-171874_102745.0757.0Topological domainMitochondrial intermembrane
HgeneCPT1Achr11:68527036chr17:58030472ENST00000265641-1819103_122745.0774.0TransmembraneHelical
HgeneCPT1Achr11:68527036chr17:58030472ENST00000265641-181948_73745.0774.0TransmembraneHelical
HgeneCPT1Achr11:68527036chr17:58030472ENST00000376618-1819103_122745.0757.0TransmembraneHelical
HgeneCPT1Achr11:68527036chr17:58030472ENST00000376618-181948_73745.0757.0TransmembraneHelical
HgeneCPT1Achr11:68527036chr17:58030472ENST00000539743-1718103_122745.0774.0TransmembraneHelical
HgeneCPT1Achr11:68527036chr17:58030472ENST00000539743-171848_73745.0774.0TransmembraneHelical
HgeneCPT1Achr11:68527036chr17:58030472ENST00000540367-1718103_122745.0757.0TransmembraneHelical
HgeneCPT1Achr11:68527036chr17:58030472ENST00000540367-171848_73745.0757.0TransmembraneHelical
HgeneCPT1Achr11:68527036chr17:58031507ENST00000265641-1819103_122745.0774.0TransmembraneHelical
HgeneCPT1Achr11:68527036chr17:58031507ENST00000265641-181948_73745.0774.0TransmembraneHelical
HgeneCPT1Achr11:68527036chr17:58031507ENST00000376618-1819103_122745.0757.0TransmembraneHelical
HgeneCPT1Achr11:68527036chr17:58031507ENST00000376618-181948_73745.0757.0TransmembraneHelical
HgeneCPT1Achr11:68527036chr17:58031507ENST00000539743-1718103_122745.0774.0TransmembraneHelical
HgeneCPT1Achr11:68527036chr17:58031507ENST00000539743-171848_73745.0774.0TransmembraneHelical
HgeneCPT1Achr11:68527036chr17:58031507ENST00000540367-1718103_122745.0757.0TransmembraneHelical
HgeneCPT1Achr11:68527036chr17:58031507ENST00000540367-171848_73745.0757.0TransmembraneHelical
HgeneCPT1Achr11:68527037chr17:58030472ENST00000265641-1819103_122745.0774.0TransmembraneHelical
HgeneCPT1Achr11:68527037chr17:58030472ENST00000265641-181948_73745.0774.0TransmembraneHelical
HgeneCPT1Achr11:68527037chr17:58030472ENST00000376618-1819103_122745.0757.0TransmembraneHelical
HgeneCPT1Achr11:68527037chr17:58030472ENST00000376618-181948_73745.0757.0TransmembraneHelical
HgeneCPT1Achr11:68527037chr17:58030472ENST00000539743-1718103_122745.0774.0TransmembraneHelical
HgeneCPT1Achr11:68527037chr17:58030472ENST00000539743-171848_73745.0774.0TransmembraneHelical
HgeneCPT1Achr11:68527037chr17:58030472ENST00000540367-1718103_122745.0757.0TransmembraneHelical
HgeneCPT1Achr11:68527037chr17:58030472ENST00000540367-171848_73745.0757.0TransmembraneHelical
HgeneCPT1Achr11:68527037chr17:58031507ENST00000265641-1819103_122745.0774.0TransmembraneHelical
HgeneCPT1Achr11:68527037chr17:58031507ENST00000265641-181948_73745.0774.0TransmembraneHelical
HgeneCPT1Achr11:68527037chr17:58031507ENST00000376618-1819103_122745.0757.0TransmembraneHelical
HgeneCPT1Achr11:68527037chr17:58031507ENST00000376618-181948_73745.0757.0TransmembraneHelical
HgeneCPT1Achr11:68527037chr17:58031507ENST00000539743-1718103_122745.0774.0TransmembraneHelical
HgeneCPT1Achr11:68527037chr17:58031507ENST00000539743-171848_73745.0774.0TransmembraneHelical
HgeneCPT1Achr11:68527037chr17:58031507ENST00000540367-1718103_122745.0757.0TransmembraneHelical
HgeneCPT1Achr11:68527037chr17:58031507ENST00000540367-171848_73745.0757.0TransmembraneHelical
TgeneRNFT1chr11:68527036chr17:58031507ENST0000030578369368_419357.0436.0RegionRequired for ubiquitin ligase activity and for protection against ER stress-induced cell death
TgeneRNFT1chr11:68527037chr17:58031507ENST0000030578369368_419357.0436.0RegionRequired for ubiquitin ligase activity and for protection against ER stress-induced cell death
TgeneRNFT1chr11:68527036chr17:58031507ENST0000030578369375_413357.0436.0Zinc fingerRING-type
TgeneRNFT1chr11:68527037chr17:58031507ENST0000030578369375_413357.0436.0Zinc fingerRING-type

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
HgeneCPT1Achr11:68527036chr17:58030472ENST00000265641-1819123_773745.0774.0Topological domainCytoplasmic
HgeneCPT1Achr11:68527036chr17:58030472ENST00000376618-1819123_773745.0757.0Topological domainCytoplasmic
HgeneCPT1Achr11:68527036chr17:58030472ENST00000539743-1718123_773745.0774.0Topological domainCytoplasmic
HgeneCPT1Achr11:68527036chr17:58030472ENST00000540367-1718123_773745.0757.0Topological domainCytoplasmic
HgeneCPT1Achr11:68527036chr17:58031507ENST00000265641-1819123_773745.0774.0Topological domainCytoplasmic
HgeneCPT1Achr11:68527036chr17:58031507ENST00000376618-1819123_773745.0757.0Topological domainCytoplasmic
HgeneCPT1Achr11:68527036chr17:58031507ENST00000539743-1718123_773745.0774.0Topological domainCytoplasmic
HgeneCPT1Achr11:68527036chr17:58031507ENST00000540367-1718123_773745.0757.0Topological domainCytoplasmic
HgeneCPT1Achr11:68527037chr17:58030472ENST00000265641-1819123_773745.0774.0Topological domainCytoplasmic
HgeneCPT1Achr11:68527037chr17:58030472ENST00000376618-1819123_773745.0757.0Topological domainCytoplasmic
HgeneCPT1Achr11:68527037chr17:58030472ENST00000539743-1718123_773745.0774.0Topological domainCytoplasmic
HgeneCPT1Achr11:68527037chr17:58030472ENST00000540367-1718123_773745.0757.0Topological domainCytoplasmic
HgeneCPT1Achr11:68527037chr17:58031507ENST00000265641-1819123_773745.0774.0Topological domainCytoplasmic
HgeneCPT1Achr11:68527037chr17:58031507ENST00000376618-1819123_773745.0757.0Topological domainCytoplasmic
HgeneCPT1Achr11:68527037chr17:58031507ENST00000539743-1718123_773745.0774.0Topological domainCytoplasmic
HgeneCPT1Achr11:68527037chr17:58031507ENST00000540367-1718123_773745.0757.0Topological domainCytoplasmic
TgeneRNFT1chr11:68527036chr17:58030472ENST0000030578379368_419391.0436.0RegionRequired for ubiquitin ligase activity and for protection against ER stress-induced cell death
TgeneRNFT1chr11:68527037chr17:58030472ENST0000030578379368_419391.0436.0RegionRequired for ubiquitin ligase activity and for protection against ER stress-induced cell death
TgeneRNFT1chr11:68527036chr17:58030472ENST0000030578379158_178391.0436.0TransmembraneHelical
TgeneRNFT1chr11:68527036chr17:58030472ENST0000030578379203_223391.0436.0TransmembraneHelical
TgeneRNFT1chr11:68527036chr17:58030472ENST0000030578379233_253391.0436.0TransmembraneHelical
TgeneRNFT1chr11:68527036chr17:58030472ENST0000030578379256_276391.0436.0TransmembraneHelical
TgeneRNFT1chr11:68527036chr17:58030472ENST0000030578379298_318391.0436.0TransmembraneHelical
TgeneRNFT1chr11:68527036chr17:58030472ENST0000030578379323_343391.0436.0TransmembraneHelical
TgeneRNFT1chr11:68527036chr17:58031507ENST0000030578369158_178357.0436.0TransmembraneHelical
TgeneRNFT1chr11:68527036chr17:58031507ENST0000030578369203_223357.0436.0TransmembraneHelical
TgeneRNFT1chr11:68527036chr17:58031507ENST0000030578369233_253357.0436.0TransmembraneHelical
TgeneRNFT1chr11:68527036chr17:58031507ENST0000030578369256_276357.0436.0TransmembraneHelical
TgeneRNFT1chr11:68527036chr17:58031507ENST0000030578369298_318357.0436.0TransmembraneHelical
TgeneRNFT1chr11:68527036chr17:58031507ENST0000030578369323_343357.0436.0TransmembraneHelical
TgeneRNFT1chr11:68527037chr17:58030472ENST0000030578379158_178391.0436.0TransmembraneHelical
TgeneRNFT1chr11:68527037chr17:58030472ENST0000030578379203_223391.0436.0TransmembraneHelical
TgeneRNFT1chr11:68527037chr17:58030472ENST0000030578379233_253391.0436.0TransmembraneHelical
TgeneRNFT1chr11:68527037chr17:58030472ENST0000030578379256_276391.0436.0TransmembraneHelical
TgeneRNFT1chr11:68527037chr17:58030472ENST0000030578379298_318391.0436.0TransmembraneHelical
TgeneRNFT1chr11:68527037chr17:58030472ENST0000030578379323_343391.0436.0TransmembraneHelical
TgeneRNFT1chr11:68527037chr17:58031507ENST0000030578369158_178357.0436.0TransmembraneHelical
TgeneRNFT1chr11:68527037chr17:58031507ENST0000030578369203_223357.0436.0TransmembraneHelical
TgeneRNFT1chr11:68527037chr17:58031507ENST0000030578369233_253357.0436.0TransmembraneHelical
TgeneRNFT1chr11:68527037chr17:58031507ENST0000030578369256_276357.0436.0TransmembraneHelical
TgeneRNFT1chr11:68527037chr17:58031507ENST0000030578369298_318357.0436.0TransmembraneHelical
TgeneRNFT1chr11:68527037chr17:58031507ENST0000030578369323_343357.0436.0TransmembraneHelical
TgeneRNFT1chr11:68527036chr17:58030472ENST0000030578379375_413391.0436.0Zinc fingerRING-type
TgeneRNFT1chr11:68527037chr17:58030472ENST0000030578379375_413391.0436.0Zinc fingerRING-type


Top

Fusion Gene Sequence for CPT1A-RNFT1


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones.
>In-frame_ENST00000540367_ENST00000305783_TCGA-L5-A8NH-01A_CPT1A_chr11_68527037_-_RNFT1_chr17_58031507_length(transcript)=3238nt_BP=2264nt
CTCCTTCTCCTTCCAGGTACTCTCTGAAGATGGCAGAAGCTCACCAAGCTGTGGCCTTTCAGTTCACGGTCACTCCGGACGGGATTGACC
TGCGGCTGAGCCATGAAGCTCTTAGACAAATCTATCTCTCTGGACTTCATTCCTGGAAAAAGAAGTTCATCAGATTCAAGAACGGCATCA
TCACTGGCGTGTACCCGGCAAGCCCCTCCAGTTGGCTTATCGTGGTGGTGGGCGTGATGACAACGATGTACGCCAAGATCGACCCCTCGT
TAGGAATAATTGCAAAAATCAATCGGACTCTGGAAACGGCCAACTGCATGTCCAGCCAGACGAAGAACGTGGTCAGCGGCGTGCTGTTTG
GCACCGGCCTGTGGGTGGCCCTCATCGTCACCATGCGCTACTCCCTGAAAGTGCTGCTCTCCTACCACGGGTGGATGTTCACTGAGCACG
GCAAGATGAGTCGTGCCACCAAGATCTGGATGGGTATGGTCAAGATCTTTTCAGGCCGAAAACCCATGTTGTACAGCTTCCAGACATCGC
TGCCTCGCCTGCCGGTCCCGGCTGTCAAAGACACTGTGAACAGGTATCTACAGTCGGTGAGGCCTCTTATGAAGGAAGAAGACTTCAAAC
GGATGACAGCACTTGCTCAAGATTTTGCTGTCGGTCTTGGACCAAGATTACAGTGGTATTTGAAGTTAAAATCCTGGTGGGCTACAAATT
ACGTGAGCGACTGGTGGGAGGAGTACATCTACCTCCGAGGACGAGGGCCGCTCATGGTGAACAGCAACTATTATGCCATGGATCTGCTGT
ATATCCTTCCAACTCACATTCAGGCAGCAAGAGCCGGCAACGCCATCCATGCCATCCTGCTTTACAGGCGCAAACTGGACCGGGAGGAAA
TCAAACCAATTCGTCTTTTGGGATCCACGATTCCACTCTGCTCCGCTCAGTGGGAGCGGATGTTTAATACTTCCCGGATCCCAGGAGAGG
AGACAGACACCATCCAGCACATGAGAGACAGCAAGCACATCGTCGTGTACCATCGAGGACGCTACTTCAAGGTCTGGCTCTACCATGATG
GGCGGCTGCTGAAGCCCCGGGAGATGGAGCAGCAGATGCAGAGGATCCTGGACAATACCTCGGAGCCTCAGCCCGGGGAGGCCAGGCTGG
CAGCCCTCACCGCAGGAGACAGAGTTCCCTGGGCCAGGTGTCGTCAGGCCTATTTTGGACGTGGGAAAAATAAGCAGTCTCTTGATGCTG
TGGAGAAAGCAGCGTTCTTTGTGACGTTAGATGAAACTGAAGAAGGATACAGAAGTGAAGACCCGGATACGTCAATGGACAGCTACGCCA
AATCTCTACTACACGGCCGATGTTACGACAGGTGGTTTGACAAGTCGTTCACGTTTGTTGTCTTCAAAAACGGGAAGATGGGCCTCAACG
CTGAACACTCCTGGGCAGATGCGCCGATCGTGGCCCACCTTTGGGAGTACGTCATGTCCATTGACAGCCTCCAGCTGGGCTATGCGGAGG
ATGGGCACTGCAAAGGCGACATCAATCCGAACATTCCGTACCCCACCAGGCTGCAGTGGGACATCCCGGGGGAATGTCAAGAGGTTATAG
AGACCTCCCTGAACACCGCAAATCTTCTGGCAAACGACGTGGATTTCCATTCCTTCCCATTCGTAGCCTTTGGTAAAGGAATCATCAAGA
AATGTCGCACGAGCCCAGACGCCTTTGTGCAGCTGGCCCTCCAGCTGGCGCACTACAAGGACATGGGCAAGTTTTGCCTCACATACGAGG
CCTCCATGACCCGGCTCTTCCGAGAGGGGAGGACGGAGACCGTGCGCTCCTGCACCACTGAGTCATGCGACTTCGTGCGGGCCATGGTGG
ACCCGGCCCAGACGGTGGAACAGAGGCTGAAGTTGTTCAAGTTGGCGTCTGAGAAGCATCAGCATATGTATCGCCTCGCCATGACCGGCT
CTGGGATCGATCGTCACCTCTTCTGCCTTTACGTGGTGTCTAAATATCTCGCTGTGGAGTCCCCTTTCCTTAAGGAAGTTTTATCTGAGC
CTTGGAGATTATCAACAAGCCAGACCCCTCAGCAGCAAGTGGAGCTGTTTGACTTGGAGAATAACCCAGAGTACGTGTCCAGCGGAGGGG
GCTTTGGACCGGTTGCTGATGACGGCTATGGTGTGTCGTACATCCTTGTGGGAGAGAACCTCATCAATTTCCACATTTCTTCCAAGTTCT
CTTGCCCTGAGACGAGTTATGGAGTGGCTGCCAGCAAGAGACAGTGTTCAGATGTGGATGATATTTGTTCAATATGTCAAGCTGAATTTC
AGAAGCCAATTCTTCTCATTTGTCAGCATATATTTTGTGAAGAGTGCATGACCTTATGGTTTAACAGAGAGAAAACATGTCCACTCTGCA
GAACTGTGATTTCAGACCATATAAACAAATGGAAGGATGGAGCCACTTCATCACACCTTCAAATATATTAAGTTGTATAAACTATCAAGG
CCACAAAATACTAATGTCATTTGGTCATAATGACTACTGATAAGGCATCAGAATGGATTTTCAGGGCTACCAGAAAAATGTTTCCAGATG
GTTTTAGAATGTAGGACTTATGATCCAATTCACCAAAAGATTAAATGAAACCACCCTGTGTTTTAAAATATATATAATGTTCAACCTAAT
GTATATGCAACATTTATTCTATTCTAATTATTTGACAGGTAACTGCAGTGTTAAATTGTAAATGTGTTTTCTTTATGTTACCAAAACAGC
AATTTGAAATTAGAACTAGTGGTTTTAGAGAACTCAGGTATTCTTTCCTGACATTGTTTTCAGAATAAAGAATATTTTTCATAATATTTT
AAGATACATACTATCTAAAAGTAGAATTTTGTTCAGCATTGACTTTTATAATTCCCATCCTAAAAATTCTTAATATTTTCATAAAATTTG
TATTTTTAAATGAAAATTCTAAATGTTGTATTTTATCAGTAACATTTTCTAAGTGAAGATTAATTTACTGAGGATGATACATTATAGTAT
TGTATTATTCTCTGTAGTAAGATTAGTAATAAGTGAAAATAAATGATTTAAATTCATTTTGTCTCTGGACGTCATAAATTCTTCCTGCCA

>In-frame_ENST00000540367_ENST00000305783_TCGA-L5-A8NH-01A_CPT1A_chr11_68527037_-_RNFT1_chr17_58031507_length(amino acids)=825AA_start in transcript=23_stop in transcript=2500
MKMAEAHQAVAFQFTVTPDGIDLRLSHEALRQIYLSGLHSWKKKFIRFKNGIITGVYPASPSSWLIVVVGVMTTMYAKIDPSLGIIAKIN
RTLETANCMSSQTKNVVSGVLFGTGLWVALIVTMRYSLKVLLSYHGWMFTEHGKMSRATKIWMGMVKIFSGRKPMLYSFQTSLPRLPVPA
VKDTVNRYLQSVRPLMKEEDFKRMTALAQDFAVGLGPRLQWYLKLKSWWATNYVSDWWEEYIYLRGRGPLMVNSNYYAMDLLYILPTHIQ
AARAGNAIHAILLYRRKLDREEIKPIRLLGSTIPLCSAQWERMFNTSRIPGEETDTIQHMRDSKHIVVYHRGRYFKVWLYHDGRLLKPRE
MEQQMQRILDNTSEPQPGEARLAALTAGDRVPWARCRQAYFGRGKNKQSLDAVEKAAFFVTLDETEEGYRSEDPDTSMDSYAKSLLHGRC
YDRWFDKSFTFVVFKNGKMGLNAEHSWADAPIVAHLWEYVMSIDSLQLGYAEDGHCKGDINPNIPYPTRLQWDIPGECQEVIETSLNTAN
LLANDVDFHSFPFVAFGKGIIKKCRTSPDAFVQLALQLAHYKDMGKFCLTYEASMTRLFREGRTETVRSCTTESCDFVRAMVDPAQTVEQ
RLKLFKLASEKHQHMYRLAMTGSGIDRHLFCLYVVSKYLAVESPFLKEVLSEPWRLSTSQTPQQQVELFDLENNPEYVSSGGGFGPVADD
GYGVSYILVGENLINFHISSKFSCPETSYGVAASKRQCSDVDDICSICQAEFQKPILLICQHIFCEECMTLWFNREKTCPLCRTVISDHI

--------------------------------------------------------------
>In-frame_ENST00000539743_ENST00000305783_TCGA-L5-A8NH-01A_CPT1A_chr11_68527037_-_RNFT1_chr17_58031507_length(transcript)=3238nt_BP=2264nt
CTCCTTCTCCTTCCAGGTACTCTCTGAAGATGGCAGAAGCTCACCAAGCTGTGGCCTTTCAGTTCACGGTCACTCCGGACGGGATTGACC
TGCGGCTGAGCCATGAAGCTCTTAGACAAATCTATCTCTCTGGACTTCATTCCTGGAAAAAGAAGTTCATCAGATTCAAGAACGGCATCA
TCACTGGCGTGTACCCGGCAAGCCCCTCCAGTTGGCTTATCGTGGTGGTGGGCGTGATGACAACGATGTACGCCAAGATCGACCCCTCGT
TAGGAATAATTGCAAAAATCAATCGGACTCTGGAAACGGCCAACTGCATGTCCAGCCAGACGAAGAACGTGGTCAGCGGCGTGCTGTTTG
GCACCGGCCTGTGGGTGGCCCTCATCGTCACCATGCGCTACTCCCTGAAAGTGCTGCTCTCCTACCACGGGTGGATGTTCACTGAGCACG
GCAAGATGAGTCGTGCCACCAAGATCTGGATGGGTATGGTCAAGATCTTTTCAGGCCGAAAACCCATGTTGTACAGCTTCCAGACATCGC
TGCCTCGCCTGCCGGTCCCGGCTGTCAAAGACACTGTGAACAGGTATCTACAGTCGGTGAGGCCTCTTATGAAGGAAGAAGACTTCAAAC
GGATGACAGCACTTGCTCAAGATTTTGCTGTCGGTCTTGGACCAAGATTACAGTGGTATTTGAAGTTAAAATCCTGGTGGGCTACAAATT
ACGTGAGCGACTGGTGGGAGGAGTACATCTACCTCCGAGGACGAGGGCCGCTCATGGTGAACAGCAACTATTATGCCATGGATCTGCTGT
ATATCCTTCCAACTCACATTCAGGCAGCAAGAGCCGGCAACGCCATCCATGCCATCCTGCTTTACAGGCGCAAACTGGACCGGGAGGAAA
TCAAACCAATTCGTCTTTTGGGATCCACGATTCCACTCTGCTCCGCTCAGTGGGAGCGGATGTTTAATACTTCCCGGATCCCAGGAGAGG
AGACAGACACCATCCAGCACATGAGAGACAGCAAGCACATCGTCGTGTACCATCGAGGACGCTACTTCAAGGTCTGGCTCTACCATGATG
GGCGGCTGCTGAAGCCCCGGGAGATGGAGCAGCAGATGCAGAGGATCCTGGACAATACCTCGGAGCCTCAGCCCGGGGAGGCCAGGCTGG
CAGCCCTCACCGCAGGAGACAGAGTTCCCTGGGCCAGGTGTCGTCAGGCCTATTTTGGACGTGGGAAAAATAAGCAGTCTCTTGATGCTG
TGGAGAAAGCAGCGTTCTTTGTGACGTTAGATGAAACTGAAGAAGGATACAGAAGTGAAGACCCGGATACGTCAATGGACAGCTACGCCA
AATCTCTACTACACGGCCGATGTTACGACAGGTGGTTTGACAAGTCGTTCACGTTTGTTGTCTTCAAAAACGGGAAGATGGGCCTCAACG
CTGAACACTCCTGGGCAGATGCGCCGATCGTGGCCCACCTTTGGGAGTACGTCATGTCCATTGACAGCCTCCAGCTGGGCTATGCGGAGG
ATGGGCACTGCAAAGGCGACATCAATCCGAACATTCCGTACCCCACCAGGCTGCAGTGGGACATCCCGGGGGAATGTCAAGAGGTTATAG
AGACCTCCCTGAACACCGCAAATCTTCTGGCAAACGACGTGGATTTCCATTCCTTCCCATTCGTAGCCTTTGGTAAAGGAATCATCAAGA
AATGTCGCACGAGCCCAGACGCCTTTGTGCAGCTGGCCCTCCAGCTGGCGCACTACAAGGACATGGGCAAGTTTTGCCTCACATACGAGG
CCTCCATGACCCGGCTCTTCCGAGAGGGGAGGACGGAGACCGTGCGCTCCTGCACCACTGAGTCATGCGACTTCGTGCGGGCCATGGTGG
ACCCGGCCCAGACGGTGGAACAGAGGCTGAAGTTGTTCAAGTTGGCGTCTGAGAAGCATCAGCATATGTATCGCCTCGCCATGACCGGCT
CTGGGATCGATCGTCACCTCTTCTGCCTTTACGTGGTGTCTAAATATCTCGCTGTGGAGTCCCCTTTCCTTAAGGAAGTTTTATCTGAGC
CTTGGAGATTATCAACAAGCCAGACCCCTCAGCAGCAAGTGGAGCTGTTTGACTTGGAGAATAACCCAGAGTACGTGTCCAGCGGAGGGG
GCTTTGGACCGGTTGCTGATGACGGCTATGGTGTGTCGTACATCCTTGTGGGAGAGAACCTCATCAATTTCCACATTTCTTCCAAGTTCT
CTTGCCCTGAGACGAGTTATGGAGTGGCTGCCAGCAAGAGACAGTGTTCAGATGTGGATGATATTTGTTCAATATGTCAAGCTGAATTTC
AGAAGCCAATTCTTCTCATTTGTCAGCATATATTTTGTGAAGAGTGCATGACCTTATGGTTTAACAGAGAGAAAACATGTCCACTCTGCA
GAACTGTGATTTCAGACCATATAAACAAATGGAAGGATGGAGCCACTTCATCACACCTTCAAATATATTAAGTTGTATAAACTATCAAGG
CCACAAAATACTAATGTCATTTGGTCATAATGACTACTGATAAGGCATCAGAATGGATTTTCAGGGCTACCAGAAAAATGTTTCCAGATG
GTTTTAGAATGTAGGACTTATGATCCAATTCACCAAAAGATTAAATGAAACCACCCTGTGTTTTAAAATATATATAATGTTCAACCTAAT
GTATATGCAACATTTATTCTATTCTAATTATTTGACAGGTAACTGCAGTGTTAAATTGTAAATGTGTTTTCTTTATGTTACCAAAACAGC
AATTTGAAATTAGAACTAGTGGTTTTAGAGAACTCAGGTATTCTTTCCTGACATTGTTTTCAGAATAAAGAATATTTTTCATAATATTTT
AAGATACATACTATCTAAAAGTAGAATTTTGTTCAGCATTGACTTTTATAATTCCCATCCTAAAAATTCTTAATATTTTCATAAAATTTG
TATTTTTAAATGAAAATTCTAAATGTTGTATTTTATCAGTAACATTTTCTAAGTGAAGATTAATTTACTGAGGATGATACATTATAGTAT
TGTATTATTCTCTGTAGTAAGATTAGTAATAAGTGAAAATAAATGATTTAAATTCATTTTGTCTCTGGACGTCATAAATTCTTCCTGCCA

>In-frame_ENST00000539743_ENST00000305783_TCGA-L5-A8NH-01A_CPT1A_chr11_68527037_-_RNFT1_chr17_58031507_length(amino acids)=825AA_start in transcript=23_stop in transcript=2500
MKMAEAHQAVAFQFTVTPDGIDLRLSHEALRQIYLSGLHSWKKKFIRFKNGIITGVYPASPSSWLIVVVGVMTTMYAKIDPSLGIIAKIN
RTLETANCMSSQTKNVVSGVLFGTGLWVALIVTMRYSLKVLLSYHGWMFTEHGKMSRATKIWMGMVKIFSGRKPMLYSFQTSLPRLPVPA
VKDTVNRYLQSVRPLMKEEDFKRMTALAQDFAVGLGPRLQWYLKLKSWWATNYVSDWWEEYIYLRGRGPLMVNSNYYAMDLLYILPTHIQ
AARAGNAIHAILLYRRKLDREEIKPIRLLGSTIPLCSAQWERMFNTSRIPGEETDTIQHMRDSKHIVVYHRGRYFKVWLYHDGRLLKPRE
MEQQMQRILDNTSEPQPGEARLAALTAGDRVPWARCRQAYFGRGKNKQSLDAVEKAAFFVTLDETEEGYRSEDPDTSMDSYAKSLLHGRC
YDRWFDKSFTFVVFKNGKMGLNAEHSWADAPIVAHLWEYVMSIDSLQLGYAEDGHCKGDINPNIPYPTRLQWDIPGECQEVIETSLNTAN
LLANDVDFHSFPFVAFGKGIIKKCRTSPDAFVQLALQLAHYKDMGKFCLTYEASMTRLFREGRTETVRSCTTESCDFVRAMVDPAQTVEQ
RLKLFKLASEKHQHMYRLAMTGSGIDRHLFCLYVVSKYLAVESPFLKEVLSEPWRLSTSQTPQQQVELFDLENNPEYVSSGGGFGPVADD
GYGVSYILVGENLINFHISSKFSCPETSYGVAASKRQCSDVDDICSICQAEFQKPILLICQHIFCEECMTLWFNREKTCPLCRTVISDHI

--------------------------------------------------------------
>In-frame_ENST00000540367_ENST00000305783_TCGA-L5-A8NH_CPT1A_chr11_68527036_-_RNFT1_chr17_58031507_length(transcript)=3238nt_BP=2264nt
CTCCTTCTCCTTCCAGGTACTCTCTGAAGATGGCAGAAGCTCACCAAGCTGTGGCCTTTCAGTTCACGGTCACTCCGGACGGGATTGACC
TGCGGCTGAGCCATGAAGCTCTTAGACAAATCTATCTCTCTGGACTTCATTCCTGGAAAAAGAAGTTCATCAGATTCAAGAACGGCATCA
TCACTGGCGTGTACCCGGCAAGCCCCTCCAGTTGGCTTATCGTGGTGGTGGGCGTGATGACAACGATGTACGCCAAGATCGACCCCTCGT
TAGGAATAATTGCAAAAATCAATCGGACTCTGGAAACGGCCAACTGCATGTCCAGCCAGACGAAGAACGTGGTCAGCGGCGTGCTGTTTG
GCACCGGCCTGTGGGTGGCCCTCATCGTCACCATGCGCTACTCCCTGAAAGTGCTGCTCTCCTACCACGGGTGGATGTTCACTGAGCACG
GCAAGATGAGTCGTGCCACCAAGATCTGGATGGGTATGGTCAAGATCTTTTCAGGCCGAAAACCCATGTTGTACAGCTTCCAGACATCGC
TGCCTCGCCTGCCGGTCCCGGCTGTCAAAGACACTGTGAACAGGTATCTACAGTCGGTGAGGCCTCTTATGAAGGAAGAAGACTTCAAAC
GGATGACAGCACTTGCTCAAGATTTTGCTGTCGGTCTTGGACCAAGATTACAGTGGTATTTGAAGTTAAAATCCTGGTGGGCTACAAATT
ACGTGAGCGACTGGTGGGAGGAGTACATCTACCTCCGAGGACGAGGGCCGCTCATGGTGAACAGCAACTATTATGCCATGGATCTGCTGT
ATATCCTTCCAACTCACATTCAGGCAGCAAGAGCCGGCAACGCCATCCATGCCATCCTGCTTTACAGGCGCAAACTGGACCGGGAGGAAA
TCAAACCAATTCGTCTTTTGGGATCCACGATTCCACTCTGCTCCGCTCAGTGGGAGCGGATGTTTAATACTTCCCGGATCCCAGGAGAGG
AGACAGACACCATCCAGCACATGAGAGACAGCAAGCACATCGTCGTGTACCATCGAGGACGCTACTTCAAGGTCTGGCTCTACCATGATG
GGCGGCTGCTGAAGCCCCGGGAGATGGAGCAGCAGATGCAGAGGATCCTGGACAATACCTCGGAGCCTCAGCCCGGGGAGGCCAGGCTGG
CAGCCCTCACCGCAGGAGACAGAGTTCCCTGGGCCAGGTGTCGTCAGGCCTATTTTGGACGTGGGAAAAATAAGCAGTCTCTTGATGCTG
TGGAGAAAGCAGCGTTCTTTGTGACGTTAGATGAAACTGAAGAAGGATACAGAAGTGAAGACCCGGATACGTCAATGGACAGCTACGCCA
AATCTCTACTACACGGCCGATGTTACGACAGGTGGTTTGACAAGTCGTTCACGTTTGTTGTCTTCAAAAACGGGAAGATGGGCCTCAACG
CTGAACACTCCTGGGCAGATGCGCCGATCGTGGCCCACCTTTGGGAGTACGTCATGTCCATTGACAGCCTCCAGCTGGGCTATGCGGAGG
ATGGGCACTGCAAAGGCGACATCAATCCGAACATTCCGTACCCCACCAGGCTGCAGTGGGACATCCCGGGGGAATGTCAAGAGGTTATAG
AGACCTCCCTGAACACCGCAAATCTTCTGGCAAACGACGTGGATTTCCATTCCTTCCCATTCGTAGCCTTTGGTAAAGGAATCATCAAGA
AATGTCGCACGAGCCCAGACGCCTTTGTGCAGCTGGCCCTCCAGCTGGCGCACTACAAGGACATGGGCAAGTTTTGCCTCACATACGAGG
CCTCCATGACCCGGCTCTTCCGAGAGGGGAGGACGGAGACCGTGCGCTCCTGCACCACTGAGTCATGCGACTTCGTGCGGGCCATGGTGG
ACCCGGCCCAGACGGTGGAACAGAGGCTGAAGTTGTTCAAGTTGGCGTCTGAGAAGCATCAGCATATGTATCGCCTCGCCATGACCGGCT
CTGGGATCGATCGTCACCTCTTCTGCCTTTACGTGGTGTCTAAATATCTCGCTGTGGAGTCCCCTTTCCTTAAGGAAGTTTTATCTGAGC
CTTGGAGATTATCAACAAGCCAGACCCCTCAGCAGCAAGTGGAGCTGTTTGACTTGGAGAATAACCCAGAGTACGTGTCCAGCGGAGGGG
GCTTTGGACCGGTTGCTGATGACGGCTATGGTGTGTCGTACATCCTTGTGGGAGAGAACCTCATCAATTTCCACATTTCTTCCAAGTTCT
CTTGCCCTGAGACGAGTTATGGAGTGGCTGCCAGCAAGAGACAGTGTTCAGATGTGGATGATATTTGTTCAATATGTCAAGCTGAATTTC
AGAAGCCAATTCTTCTCATTTGTCAGCATATATTTTGTGAAGAGTGCATGACCTTATGGTTTAACAGAGAGAAAACATGTCCACTCTGCA
GAACTGTGATTTCAGACCATATAAACAAATGGAAGGATGGAGCCACTTCATCACACCTTCAAATATATTAAGTTGTATAAACTATCAAGG
CCACAAAATACTAATGTCATTTGGTCATAATGACTACTGATAAGGCATCAGAATGGATTTTCAGGGCTACCAGAAAAATGTTTCCAGATG
GTTTTAGAATGTAGGACTTATGATCCAATTCACCAAAAGATTAAATGAAACCACCCTGTGTTTTAAAATATATATAATGTTCAACCTAAT
GTATATGCAACATTTATTCTATTCTAATTATTTGACAGGTAACTGCAGTGTTAAATTGTAAATGTGTTTTCTTTATGTTACCAAAACAGC
AATTTGAAATTAGAACTAGTGGTTTTAGAGAACTCAGGTATTCTTTCCTGACATTGTTTTCAGAATAAAGAATATTTTTCATAATATTTT
AAGATACATACTATCTAAAAGTAGAATTTTGTTCAGCATTGACTTTTATAATTCCCATCCTAAAAATTCTTAATATTTTCATAAAATTTG
TATTTTTAAATGAAAATTCTAAATGTTGTATTTTATCAGTAACATTTTCTAAGTGAAGATTAATTTACTGAGGATGATACATTATAGTAT
TGTATTATTCTCTGTAGTAAGATTAGTAATAAGTGAAAATAAATGATTTAAATTCATTTTGTCTCTGGACGTCATAAATTCTTCCTGCCA

>In-frame_ENST00000540367_ENST00000305783_TCGA-L5-A8NH_CPT1A_chr11_68527036_-_RNFT1_chr17_58031507_length(amino acids)=825AA_start in transcript=23_stop in transcript=2500
MKMAEAHQAVAFQFTVTPDGIDLRLSHEALRQIYLSGLHSWKKKFIRFKNGIITGVYPASPSSWLIVVVGVMTTMYAKIDPSLGIIAKIN
RTLETANCMSSQTKNVVSGVLFGTGLWVALIVTMRYSLKVLLSYHGWMFTEHGKMSRATKIWMGMVKIFSGRKPMLYSFQTSLPRLPVPA
VKDTVNRYLQSVRPLMKEEDFKRMTALAQDFAVGLGPRLQWYLKLKSWWATNYVSDWWEEYIYLRGRGPLMVNSNYYAMDLLYILPTHIQ
AARAGNAIHAILLYRRKLDREEIKPIRLLGSTIPLCSAQWERMFNTSRIPGEETDTIQHMRDSKHIVVYHRGRYFKVWLYHDGRLLKPRE
MEQQMQRILDNTSEPQPGEARLAALTAGDRVPWARCRQAYFGRGKNKQSLDAVEKAAFFVTLDETEEGYRSEDPDTSMDSYAKSLLHGRC
YDRWFDKSFTFVVFKNGKMGLNAEHSWADAPIVAHLWEYVMSIDSLQLGYAEDGHCKGDINPNIPYPTRLQWDIPGECQEVIETSLNTAN
LLANDVDFHSFPFVAFGKGIIKKCRTSPDAFVQLALQLAHYKDMGKFCLTYEASMTRLFREGRTETVRSCTTESCDFVRAMVDPAQTVEQ
RLKLFKLASEKHQHMYRLAMTGSGIDRHLFCLYVVSKYLAVESPFLKEVLSEPWRLSTSQTPQQQVELFDLENNPEYVSSGGGFGPVADD
GYGVSYILVGENLINFHISSKFSCPETSYGVAASKRQCSDVDDICSICQAEFQKPILLICQHIFCEECMTLWFNREKTCPLCRTVISDHI

--------------------------------------------------------------
>In-frame_ENST00000539743_ENST00000305783_TCGA-L5-A8NH_CPT1A_chr11_68527036_-_RNFT1_chr17_58031507_length(transcript)=3238nt_BP=2264nt
CTCCTTCTCCTTCCAGGTACTCTCTGAAGATGGCAGAAGCTCACCAAGCTGTGGCCTTTCAGTTCACGGTCACTCCGGACGGGATTGACC
TGCGGCTGAGCCATGAAGCTCTTAGACAAATCTATCTCTCTGGACTTCATTCCTGGAAAAAGAAGTTCATCAGATTCAAGAACGGCATCA
TCACTGGCGTGTACCCGGCAAGCCCCTCCAGTTGGCTTATCGTGGTGGTGGGCGTGATGACAACGATGTACGCCAAGATCGACCCCTCGT
TAGGAATAATTGCAAAAATCAATCGGACTCTGGAAACGGCCAACTGCATGTCCAGCCAGACGAAGAACGTGGTCAGCGGCGTGCTGTTTG
GCACCGGCCTGTGGGTGGCCCTCATCGTCACCATGCGCTACTCCCTGAAAGTGCTGCTCTCCTACCACGGGTGGATGTTCACTGAGCACG
GCAAGATGAGTCGTGCCACCAAGATCTGGATGGGTATGGTCAAGATCTTTTCAGGCCGAAAACCCATGTTGTACAGCTTCCAGACATCGC
TGCCTCGCCTGCCGGTCCCGGCTGTCAAAGACACTGTGAACAGGTATCTACAGTCGGTGAGGCCTCTTATGAAGGAAGAAGACTTCAAAC
GGATGACAGCACTTGCTCAAGATTTTGCTGTCGGTCTTGGACCAAGATTACAGTGGTATTTGAAGTTAAAATCCTGGTGGGCTACAAATT
ACGTGAGCGACTGGTGGGAGGAGTACATCTACCTCCGAGGACGAGGGCCGCTCATGGTGAACAGCAACTATTATGCCATGGATCTGCTGT
ATATCCTTCCAACTCACATTCAGGCAGCAAGAGCCGGCAACGCCATCCATGCCATCCTGCTTTACAGGCGCAAACTGGACCGGGAGGAAA
TCAAACCAATTCGTCTTTTGGGATCCACGATTCCACTCTGCTCCGCTCAGTGGGAGCGGATGTTTAATACTTCCCGGATCCCAGGAGAGG
AGACAGACACCATCCAGCACATGAGAGACAGCAAGCACATCGTCGTGTACCATCGAGGACGCTACTTCAAGGTCTGGCTCTACCATGATG
GGCGGCTGCTGAAGCCCCGGGAGATGGAGCAGCAGATGCAGAGGATCCTGGACAATACCTCGGAGCCTCAGCCCGGGGAGGCCAGGCTGG
CAGCCCTCACCGCAGGAGACAGAGTTCCCTGGGCCAGGTGTCGTCAGGCCTATTTTGGACGTGGGAAAAATAAGCAGTCTCTTGATGCTG
TGGAGAAAGCAGCGTTCTTTGTGACGTTAGATGAAACTGAAGAAGGATACAGAAGTGAAGACCCGGATACGTCAATGGACAGCTACGCCA
AATCTCTACTACACGGCCGATGTTACGACAGGTGGTTTGACAAGTCGTTCACGTTTGTTGTCTTCAAAAACGGGAAGATGGGCCTCAACG
CTGAACACTCCTGGGCAGATGCGCCGATCGTGGCCCACCTTTGGGAGTACGTCATGTCCATTGACAGCCTCCAGCTGGGCTATGCGGAGG
ATGGGCACTGCAAAGGCGACATCAATCCGAACATTCCGTACCCCACCAGGCTGCAGTGGGACATCCCGGGGGAATGTCAAGAGGTTATAG
AGACCTCCCTGAACACCGCAAATCTTCTGGCAAACGACGTGGATTTCCATTCCTTCCCATTCGTAGCCTTTGGTAAAGGAATCATCAAGA
AATGTCGCACGAGCCCAGACGCCTTTGTGCAGCTGGCCCTCCAGCTGGCGCACTACAAGGACATGGGCAAGTTTTGCCTCACATACGAGG
CCTCCATGACCCGGCTCTTCCGAGAGGGGAGGACGGAGACCGTGCGCTCCTGCACCACTGAGTCATGCGACTTCGTGCGGGCCATGGTGG
ACCCGGCCCAGACGGTGGAACAGAGGCTGAAGTTGTTCAAGTTGGCGTCTGAGAAGCATCAGCATATGTATCGCCTCGCCATGACCGGCT
CTGGGATCGATCGTCACCTCTTCTGCCTTTACGTGGTGTCTAAATATCTCGCTGTGGAGTCCCCTTTCCTTAAGGAAGTTTTATCTGAGC
CTTGGAGATTATCAACAAGCCAGACCCCTCAGCAGCAAGTGGAGCTGTTTGACTTGGAGAATAACCCAGAGTACGTGTCCAGCGGAGGGG
GCTTTGGACCGGTTGCTGATGACGGCTATGGTGTGTCGTACATCCTTGTGGGAGAGAACCTCATCAATTTCCACATTTCTTCCAAGTTCT
CTTGCCCTGAGACGAGTTATGGAGTGGCTGCCAGCAAGAGACAGTGTTCAGATGTGGATGATATTTGTTCAATATGTCAAGCTGAATTTC
AGAAGCCAATTCTTCTCATTTGTCAGCATATATTTTGTGAAGAGTGCATGACCTTATGGTTTAACAGAGAGAAAACATGTCCACTCTGCA
GAACTGTGATTTCAGACCATATAAACAAATGGAAGGATGGAGCCACTTCATCACACCTTCAAATATATTAAGTTGTATAAACTATCAAGG
CCACAAAATACTAATGTCATTTGGTCATAATGACTACTGATAAGGCATCAGAATGGATTTTCAGGGCTACCAGAAAAATGTTTCCAGATG
GTTTTAGAATGTAGGACTTATGATCCAATTCACCAAAAGATTAAATGAAACCACCCTGTGTTTTAAAATATATATAATGTTCAACCTAAT
GTATATGCAACATTTATTCTATTCTAATTATTTGACAGGTAACTGCAGTGTTAAATTGTAAATGTGTTTTCTTTATGTTACCAAAACAGC
AATTTGAAATTAGAACTAGTGGTTTTAGAGAACTCAGGTATTCTTTCCTGACATTGTTTTCAGAATAAAGAATATTTTTCATAATATTTT
AAGATACATACTATCTAAAAGTAGAATTTTGTTCAGCATTGACTTTTATAATTCCCATCCTAAAAATTCTTAATATTTTCATAAAATTTG
TATTTTTAAATGAAAATTCTAAATGTTGTATTTTATCAGTAACATTTTCTAAGTGAAGATTAATTTACTGAGGATGATACATTATAGTAT
TGTATTATTCTCTGTAGTAAGATTAGTAATAAGTGAAAATAAATGATTTAAATTCATTTTGTCTCTGGACGTCATAAATTCTTCCTGCCA

>In-frame_ENST00000539743_ENST00000305783_TCGA-L5-A8NH_CPT1A_chr11_68527036_-_RNFT1_chr17_58031507_length(amino acids)=825AA_start in transcript=23_stop in transcript=2500
MKMAEAHQAVAFQFTVTPDGIDLRLSHEALRQIYLSGLHSWKKKFIRFKNGIITGVYPASPSSWLIVVVGVMTTMYAKIDPSLGIIAKIN
RTLETANCMSSQTKNVVSGVLFGTGLWVALIVTMRYSLKVLLSYHGWMFTEHGKMSRATKIWMGMVKIFSGRKPMLYSFQTSLPRLPVPA
VKDTVNRYLQSVRPLMKEEDFKRMTALAQDFAVGLGPRLQWYLKLKSWWATNYVSDWWEEYIYLRGRGPLMVNSNYYAMDLLYILPTHIQ
AARAGNAIHAILLYRRKLDREEIKPIRLLGSTIPLCSAQWERMFNTSRIPGEETDTIQHMRDSKHIVVYHRGRYFKVWLYHDGRLLKPRE
MEQQMQRILDNTSEPQPGEARLAALTAGDRVPWARCRQAYFGRGKNKQSLDAVEKAAFFVTLDETEEGYRSEDPDTSMDSYAKSLLHGRC
YDRWFDKSFTFVVFKNGKMGLNAEHSWADAPIVAHLWEYVMSIDSLQLGYAEDGHCKGDINPNIPYPTRLQWDIPGECQEVIETSLNTAN
LLANDVDFHSFPFVAFGKGIIKKCRTSPDAFVQLALQLAHYKDMGKFCLTYEASMTRLFREGRTETVRSCTTESCDFVRAMVDPAQTVEQ
RLKLFKLASEKHQHMYRLAMTGSGIDRHLFCLYVVSKYLAVESPFLKEVLSEPWRLSTSQTPQQQVELFDLENNPEYVSSGGGFGPVADD
GYGVSYILVGENLINFHISSKFSCPETSYGVAASKRQCSDVDDICSICQAEFQKPILLICQHIFCEECMTLWFNREKTCPLCRTVISDHI

--------------------------------------------------------------
>In-frame_ENST00000376618_ENST00000305783_TCGA-L5-A8NH_CPT1A_chr11_68527036_-_RNFT1_chr17_58030472_length(transcript)=3277nt_BP=2405nt
GGACCCGCCTCAGCCAATCCGCTGCTGCCGGCGTCGGGTGCGCTCGGCCTCGCCCGCGGCCCTCCTTCCCCGGCTCCCGCTCGCCGCTCG
TTCACTCCACCGCCGCCGCCGCCGCCGCCGCTGCCGCTGCCGCTGCCGCACCTCCGTAGCTGACTCGGTACTCTCTGAAGATGGCAGAAG
CTCACCAAGCTGTGGCCTTTCAGTTCACGGTCACTCCGGACGGGATTGACCTGCGGCTGAGCCATGAAGCTCTTAGACAAATCTATCTCT
CTGGACTTCATTCCTGGAAAAAGAAGTTCATCAGATTCAAGAACGGCATCATCACTGGCGTGTACCCGGCAAGCCCCTCCAGTTGGCTTA
TCGTGGTGGTGGGCGTGATGACAACGATGTACGCCAAGATCGACCCCTCGTTAGGAATAATTGCAAAAATCAATCGGACTCTGGAAACGG
CCAACTGCATGTCCAGCCAGACGAAGAACGTGGTCAGCGGCGTGCTGTTTGGCACCGGCCTGTGGGTGGCCCTCATCGTCACCATGCGCT
ACTCCCTGAAAGTGCTGCTCTCCTACCACGGGTGGATGTTCACTGAGCACGGCAAGATGAGTCGTGCCACCAAGATCTGGATGGGTATGG
TCAAGATCTTTTCAGGCCGAAAACCCATGTTGTACAGCTTCCAGACATCGCTGCCTCGCCTGCCGGTCCCGGCTGTCAAAGACACTGTGA
ACAGGTATCTACAGTCGGTGAGGCCTCTTATGAAGGAAGAAGACTTCAAACGGATGACAGCACTTGCTCAAGATTTTGCTGTCGGTCTTG
GACCAAGATTACAGTGGTATTTGAAGTTAAAATCCTGGTGGGCTACAAATTACGTGAGCGACTGGTGGGAGGAGTACATCTACCTCCGAG
GACGAGGGCCGCTCATGGTGAACAGCAACTATTATGCCATGGATCTGCTGTATATCCTTCCAACTCACATTCAGGCAGCAAGAGCCGGCA
ACGCCATCCATGCCATCCTGCTTTACAGGCGCAAACTGGACCGGGAGGAAATCAAACCAATTCGTCTTTTGGGATCCACGATTCCACTCT
GCTCCGCTCAGTGGGAGCGGATGTTTAATACTTCCCGGATCCCAGGAGAGGAGACAGACACCATCCAGCACATGAGAGACAGCAAGCACA
TCGTCGTGTACCATCGAGGACGCTACTTCAAGGTCTGGCTCTACCATGATGGGCGGCTGCTGAAGCCCCGGGAGATGGAGCAGCAGATGC
AGAGGATCCTGGACAATACCTCGGAGCCTCAGCCCGGGGAGGCCAGGCTGGCAGCCCTCACCGCAGGAGACAGAGTTCCCTGGGCCAGGT
GTCGTCAGGCCTATTTTGGACGTGGGAAAAATAAGCAGTCTCTTGATGCTGTGGAGAAAGCAGCGTTCTTTGTGACGTTAGATGAAACTG
AAGAAGGATACAGAAGTGAAGACCCGGATACGTCAATGGACAGCTACGCCAAATCTCTACTACACGGCCGATGTTACGACAGGTGGTTTG
ACAAGTCGTTCACGTTTGTTGTCTTCAAAAACGGGAAGATGGGCCTCAACGCTGAACACTCCTGGGCAGATGCGCCGATCGTGGCCCACC
TTTGGGAGTACGTCATGTCCATTGACAGCCTCCAGCTGGGCTATGCGGAGGATGGGCACTGCAAAGGCGACATCAATCCGAACATTCCGT
ACCCCACCAGGCTGCAGTGGGACATCCCGGGGGAATGTCAAGAGGTTATAGAGACCTCCCTGAACACCGCAAATCTTCTGGCAAACGACG
TGGATTTCCATTCCTTCCCATTCGTAGCCTTTGGTAAAGGAATCATCAAGAAATGTCGCACGAGCCCAGACGCCTTTGTGCAGCTGGCCC
TCCAGCTGGCGCACTACAAGGACATGGGCAAGTTTTGCCTCACATACGAGGCCTCCATGACCCGGCTCTTCCGAGAGGGGAGGACGGAGA
CCGTGCGCTCCTGCACCACTGAGTCATGCGACTTCGTGCGGGCCATGGTGGACCCGGCCCAGACGGTGGAACAGAGGCTGAAGTTGTTCA
AGTTGGCGTCTGAGAAGCATCAGCATATGTATCGCCTCGCCATGACCGGCTCTGGGATCGATCGTCACCTCTTCTGCCTTTACGTGGTGT
CTAAATATCTCGCTGTGGAGTCCCCTTTCCTTAAGGAAGTTTTATCTGAGCCTTGGAGATTATCAACAAGCCAGACCCCTCAGCAGCAAG
TGGAGCTGTTTGACTTGGAGAATAACCCAGAGTACGTGTCCAGCGGAGGGGGCTTTGGACCGGTTGCTGATGACGGCTATGGTGTGTCGT
ACATCCTTGTGGGAGAGAACCTCATCAATTTCCACATTTCTTCCAAGTTCTCTTGCCCTGAGACGCATATATTTTGTGAAGAGTGCATGA
CCTTATGGTTTAACAGAGAGAAAACATGTCCACTCTGCAGAACTGTGATTTCAGACCATATAAACAAATGGAAGGATGGAGCCACTTCAT
CACACCTTCAAATATATTAAGTTGTATAAACTATCAAGGCCACAAAATACTAATGTCATTTGGTCATAATGACTACTGATAAGGCATCAG
AATGGATTTTCAGGGCTACCAGAAAAATGTTTCCAGATGGTTTTAGAATGTAGGACTTATGATCCAATTCACCAAAAGATTAAATGAAAC
CACCCTGTGTTTTAAAATATATATAATGTTCAACCTAATGTATATGCAACATTTATTCTATTCTAATTATTTGACAGGTAACTGCAGTGT
TAAATTGTAAATGTGTTTTCTTTATGTTACCAAAACAGCAATTTGAAATTAGAACTAGTGGTTTTAGAGAACTCAGGTATTCTTTCCTGA
CATTGTTTTCAGAATAAAGAATATTTTTCATAATATTTTAAGATACATACTATCTAAAAGTAGAATTTTGTTCAGCATTGACTTTTATAA
TTCCCATCCTAAAAATTCTTAATATTTTCATAAAATTTGTATTTTTAAATGAAAATTCTAAATGTTGTATTTTATCAGTAACATTTTCTA
AGTGAAGATTAATTTACTGAGGATGATACATTATAGTATTGTATTATTCTCTGTAGTAAGATTAGTAATAAGTGAAAATAAATGATTTAA
ATTCATTTTGTCTCTGGACGTCATAAATTCTTCCTGCCATCAGCTTTAATGTTCATGATCATGCTTTTTGTATAGTACCATGGAGTATCT

>In-frame_ENST00000376618_ENST00000305783_TCGA-L5-A8NH_CPT1A_chr11_68527036_-_RNFT1_chr17_58030472_length(amino acids)=796AA_start in transcript=149_stop in transcript=2539
MTRYSLKMAEAHQAVAFQFTVTPDGIDLRLSHEALRQIYLSGLHSWKKKFIRFKNGIITGVYPASPSSWLIVVVGVMTTMYAKIDPSLGI
IAKINRTLETANCMSSQTKNVVSGVLFGTGLWVALIVTMRYSLKVLLSYHGWMFTEHGKMSRATKIWMGMVKIFSGRKPMLYSFQTSLPR
LPVPAVKDTVNRYLQSVRPLMKEEDFKRMTALAQDFAVGLGPRLQWYLKLKSWWATNYVSDWWEEYIYLRGRGPLMVNSNYYAMDLLYIL
PTHIQAARAGNAIHAILLYRRKLDREEIKPIRLLGSTIPLCSAQWERMFNTSRIPGEETDTIQHMRDSKHIVVYHRGRYFKVWLYHDGRL
LKPREMEQQMQRILDNTSEPQPGEARLAALTAGDRVPWARCRQAYFGRGKNKQSLDAVEKAAFFVTLDETEEGYRSEDPDTSMDSYAKSL
LHGRCYDRWFDKSFTFVVFKNGKMGLNAEHSWADAPIVAHLWEYVMSIDSLQLGYAEDGHCKGDINPNIPYPTRLQWDIPGECQEVIETS
LNTANLLANDVDFHSFPFVAFGKGIIKKCRTSPDAFVQLALQLAHYKDMGKFCLTYEASMTRLFREGRTETVRSCTTESCDFVRAMVDPA
QTVEQRLKLFKLASEKHQHMYRLAMTGSGIDRHLFCLYVVSKYLAVESPFLKEVLSEPWRLSTSQTPQQQVELFDLENNPEYVSSGGGFG

--------------------------------------------------------------
>In-frame_ENST00000265641_ENST00000305783_TCGA-L5-A8NH_CPT1A_chr11_68527036_-_RNFT1_chr17_58030472_length(transcript)=3262nt_BP=2390nt
AATCCGCTGCTGCCGGCGTCGGGTGCGCTCGGCCTCGCCCGCGGCCCTCCTTCCCCGGCTCCCGCTCGCCGCTCGTTCACTCCACCGCCG
CCGCCGCCGCCGCCGCTGCCGCTGCCGCTGCCGCACCTCCGTAGCTGACTCGGTACTCTCTGAAGATGGCAGAAGCTCACCAAGCTGTGG
CCTTTCAGTTCACGGTCACTCCGGACGGGATTGACCTGCGGCTGAGCCATGAAGCTCTTAGACAAATCTATCTCTCTGGACTTCATTCCT
GGAAAAAGAAGTTCATCAGATTCAAGAACGGCATCATCACTGGCGTGTACCCGGCAAGCCCCTCCAGTTGGCTTATCGTGGTGGTGGGCG
TGATGACAACGATGTACGCCAAGATCGACCCCTCGTTAGGAATAATTGCAAAAATCAATCGGACTCTGGAAACGGCCAACTGCATGTCCA
GCCAGACGAAGAACGTGGTCAGCGGCGTGCTGTTTGGCACCGGCCTGTGGGTGGCCCTCATCGTCACCATGCGCTACTCCCTGAAAGTGC
TGCTCTCCTACCACGGGTGGATGTTCACTGAGCACGGCAAGATGAGTCGTGCCACCAAGATCTGGATGGGTATGGTCAAGATCTTTTCAG
GCCGAAAACCCATGTTGTACAGCTTCCAGACATCGCTGCCTCGCCTGCCGGTCCCGGCTGTCAAAGACACTGTGAACAGGTATCTACAGT
CGGTGAGGCCTCTTATGAAGGAAGAAGACTTCAAACGGATGACAGCACTTGCTCAAGATTTTGCTGTCGGTCTTGGACCAAGATTACAGT
GGTATTTGAAGTTAAAATCCTGGTGGGCTACAAATTACGTGAGCGACTGGTGGGAGGAGTACATCTACCTCCGAGGACGAGGGCCGCTCA
TGGTGAACAGCAACTATTATGCCATGGATCTGCTGTATATCCTTCCAACTCACATTCAGGCAGCAAGAGCCGGCAACGCCATCCATGCCA
TCCTGCTTTACAGGCGCAAACTGGACCGGGAGGAAATCAAACCAATTCGTCTTTTGGGATCCACGATTCCACTCTGCTCCGCTCAGTGGG
AGCGGATGTTTAATACTTCCCGGATCCCAGGAGAGGAGACAGACACCATCCAGCACATGAGAGACAGCAAGCACATCGTCGTGTACCATC
GAGGACGCTACTTCAAGGTCTGGCTCTACCATGATGGGCGGCTGCTGAAGCCCCGGGAGATGGAGCAGCAGATGCAGAGGATCCTGGACA
ATACCTCGGAGCCTCAGCCCGGGGAGGCCAGGCTGGCAGCCCTCACCGCAGGAGACAGAGTTCCCTGGGCCAGGTGTCGTCAGGCCTATT
TTGGACGTGGGAAAAATAAGCAGTCTCTTGATGCTGTGGAGAAAGCAGCGTTCTTTGTGACGTTAGATGAAACTGAAGAAGGATACAGAA
GTGAAGACCCGGATACGTCAATGGACAGCTACGCCAAATCTCTACTACACGGCCGATGTTACGACAGGTGGTTTGACAAGTCGTTCACGT
TTGTTGTCTTCAAAAACGGGAAGATGGGCCTCAACGCTGAACACTCCTGGGCAGATGCGCCGATCGTGGCCCACCTTTGGGAGTACGTCA
TGTCCATTGACAGCCTCCAGCTGGGCTATGCGGAGGATGGGCACTGCAAAGGCGACATCAATCCGAACATTCCGTACCCCACCAGGCTGC
AGTGGGACATCCCGGGGGAATGTCAAGAGGTTATAGAGACCTCCCTGAACACCGCAAATCTTCTGGCAAACGACGTGGATTTCCATTCCT
TCCCATTCGTAGCCTTTGGTAAAGGAATCATCAAGAAATGTCGCACGAGCCCAGACGCCTTTGTGCAGCTGGCCCTCCAGCTGGCGCACT
ACAAGGACATGGGCAAGTTTTGCCTCACATACGAGGCCTCCATGACCCGGCTCTTCCGAGAGGGGAGGACGGAGACCGTGCGCTCCTGCA
CCACTGAGTCATGCGACTTCGTGCGGGCCATGGTGGACCCGGCCCAGACGGTGGAACAGAGGCTGAAGTTGTTCAAGTTGGCGTCTGAGA
AGCATCAGCATATGTATCGCCTCGCCATGACCGGCTCTGGGATCGATCGTCACCTCTTCTGCCTTTACGTGGTGTCTAAATATCTCGCTG
TGGAGTCCCCTTTCCTTAAGGAAGTTTTATCTGAGCCTTGGAGATTATCAACAAGCCAGACCCCTCAGCAGCAAGTGGAGCTGTTTGACT
TGGAGAATAACCCAGAGTACGTGTCCAGCGGAGGGGGCTTTGGACCGGTTGCTGATGACGGCTATGGTGTGTCGTACATCCTTGTGGGAG
AGAACCTCATCAATTTCCACATTTCTTCCAAGTTCTCTTGCCCTGAGACGCATATATTTTGTGAAGAGTGCATGACCTTATGGTTTAACA
GAGAGAAAACATGTCCACTCTGCAGAACTGTGATTTCAGACCATATAAACAAATGGAAGGATGGAGCCACTTCATCACACCTTCAAATAT
ATTAAGTTGTATAAACTATCAAGGCCACAAAATACTAATGTCATTTGGTCATAATGACTACTGATAAGGCATCAGAATGGATTTTCAGGG
CTACCAGAAAAATGTTTCCAGATGGTTTTAGAATGTAGGACTTATGATCCAATTCACCAAAAGATTAAATGAAACCACCCTGTGTTTTAA
AATATATATAATGTTCAACCTAATGTATATGCAACATTTATTCTATTCTAATTATTTGACAGGTAACTGCAGTGTTAAATTGTAAATGTG
TTTTCTTTATGTTACCAAAACAGCAATTTGAAATTAGAACTAGTGGTTTTAGAGAACTCAGGTATTCTTTCCTGACATTGTTTTCAGAAT
AAAGAATATTTTTCATAATATTTTAAGATACATACTATCTAAAAGTAGAATTTTGTTCAGCATTGACTTTTATAATTCCCATCCTAAAAA
TTCTTAATATTTTCATAAAATTTGTATTTTTAAATGAAAATTCTAAATGTTGTATTTTATCAGTAACATTTTCTAAGTGAAGATTAATTT
ACTGAGGATGATACATTATAGTATTGTATTATTCTCTGTAGTAAGATTAGTAATAAGTGAAAATAAATGATTTAAATTCATTTTGTCTCT
GGACGTCATAAATTCTTCCTGCCATCAGCTTTAATGTTCATGATCATGCTTTTTGTATAGTACCATGGAGTATCTCGAAGTAACTATTAA

>In-frame_ENST00000265641_ENST00000305783_TCGA-L5-A8NH_CPT1A_chr11_68527036_-_RNFT1_chr17_58030472_length(amino acids)=796AA_start in transcript=134_stop in transcript=2524
MTRYSLKMAEAHQAVAFQFTVTPDGIDLRLSHEALRQIYLSGLHSWKKKFIRFKNGIITGVYPASPSSWLIVVVGVMTTMYAKIDPSLGI
IAKINRTLETANCMSSQTKNVVSGVLFGTGLWVALIVTMRYSLKVLLSYHGWMFTEHGKMSRATKIWMGMVKIFSGRKPMLYSFQTSLPR
LPVPAVKDTVNRYLQSVRPLMKEEDFKRMTALAQDFAVGLGPRLQWYLKLKSWWATNYVSDWWEEYIYLRGRGPLMVNSNYYAMDLLYIL
PTHIQAARAGNAIHAILLYRRKLDREEIKPIRLLGSTIPLCSAQWERMFNTSRIPGEETDTIQHMRDSKHIVVYHRGRYFKVWLYHDGRL
LKPREMEQQMQRILDNTSEPQPGEARLAALTAGDRVPWARCRQAYFGRGKNKQSLDAVEKAAFFVTLDETEEGYRSEDPDTSMDSYAKSL
LHGRCYDRWFDKSFTFVVFKNGKMGLNAEHSWADAPIVAHLWEYVMSIDSLQLGYAEDGHCKGDINPNIPYPTRLQWDIPGECQEVIETS
LNTANLLANDVDFHSFPFVAFGKGIIKKCRTSPDAFVQLALQLAHYKDMGKFCLTYEASMTRLFREGRTETVRSCTTESCDFVRAMVDPA
QTVEQRLKLFKLASEKHQHMYRLAMTGSGIDRHLFCLYVVSKYLAVESPFLKEVLSEPWRLSTSQTPQQQVELFDLENNPEYVSSGGGFG

--------------------------------------------------------------
>In-frame_ENST00000376618_ENST00000305783_TCGA-L5-A8NH_CPT1A_chr11_68527037_-_RNFT1_chr17_58030472_length(transcript)=3277nt_BP=2405nt
GGACCCGCCTCAGCCAATCCGCTGCTGCCGGCGTCGGGTGCGCTCGGCCTCGCCCGCGGCCCTCCTTCCCCGGCTCCCGCTCGCCGCTCG
TTCACTCCACCGCCGCCGCCGCCGCCGCCGCTGCCGCTGCCGCTGCCGCACCTCCGTAGCTGACTCGGTACTCTCTGAAGATGGCAGAAG
CTCACCAAGCTGTGGCCTTTCAGTTCACGGTCACTCCGGACGGGATTGACCTGCGGCTGAGCCATGAAGCTCTTAGACAAATCTATCTCT
CTGGACTTCATTCCTGGAAAAAGAAGTTCATCAGATTCAAGAACGGCATCATCACTGGCGTGTACCCGGCAAGCCCCTCCAGTTGGCTTA
TCGTGGTGGTGGGCGTGATGACAACGATGTACGCCAAGATCGACCCCTCGTTAGGAATAATTGCAAAAATCAATCGGACTCTGGAAACGG
CCAACTGCATGTCCAGCCAGACGAAGAACGTGGTCAGCGGCGTGCTGTTTGGCACCGGCCTGTGGGTGGCCCTCATCGTCACCATGCGCT
ACTCCCTGAAAGTGCTGCTCTCCTACCACGGGTGGATGTTCACTGAGCACGGCAAGATGAGTCGTGCCACCAAGATCTGGATGGGTATGG
TCAAGATCTTTTCAGGCCGAAAACCCATGTTGTACAGCTTCCAGACATCGCTGCCTCGCCTGCCGGTCCCGGCTGTCAAAGACACTGTGA
ACAGGTATCTACAGTCGGTGAGGCCTCTTATGAAGGAAGAAGACTTCAAACGGATGACAGCACTTGCTCAAGATTTTGCTGTCGGTCTTG
GACCAAGATTACAGTGGTATTTGAAGTTAAAATCCTGGTGGGCTACAAATTACGTGAGCGACTGGTGGGAGGAGTACATCTACCTCCGAG
GACGAGGGCCGCTCATGGTGAACAGCAACTATTATGCCATGGATCTGCTGTATATCCTTCCAACTCACATTCAGGCAGCAAGAGCCGGCA
ACGCCATCCATGCCATCCTGCTTTACAGGCGCAAACTGGACCGGGAGGAAATCAAACCAATTCGTCTTTTGGGATCCACGATTCCACTCT
GCTCCGCTCAGTGGGAGCGGATGTTTAATACTTCCCGGATCCCAGGAGAGGAGACAGACACCATCCAGCACATGAGAGACAGCAAGCACA
TCGTCGTGTACCATCGAGGACGCTACTTCAAGGTCTGGCTCTACCATGATGGGCGGCTGCTGAAGCCCCGGGAGATGGAGCAGCAGATGC
AGAGGATCCTGGACAATACCTCGGAGCCTCAGCCCGGGGAGGCCAGGCTGGCAGCCCTCACCGCAGGAGACAGAGTTCCCTGGGCCAGGT
GTCGTCAGGCCTATTTTGGACGTGGGAAAAATAAGCAGTCTCTTGATGCTGTGGAGAAAGCAGCGTTCTTTGTGACGTTAGATGAAACTG
AAGAAGGATACAGAAGTGAAGACCCGGATACGTCAATGGACAGCTACGCCAAATCTCTACTACACGGCCGATGTTACGACAGGTGGTTTG
ACAAGTCGTTCACGTTTGTTGTCTTCAAAAACGGGAAGATGGGCCTCAACGCTGAACACTCCTGGGCAGATGCGCCGATCGTGGCCCACC
TTTGGGAGTACGTCATGTCCATTGACAGCCTCCAGCTGGGCTATGCGGAGGATGGGCACTGCAAAGGCGACATCAATCCGAACATTCCGT
ACCCCACCAGGCTGCAGTGGGACATCCCGGGGGAATGTCAAGAGGTTATAGAGACCTCCCTGAACACCGCAAATCTTCTGGCAAACGACG
TGGATTTCCATTCCTTCCCATTCGTAGCCTTTGGTAAAGGAATCATCAAGAAATGTCGCACGAGCCCAGACGCCTTTGTGCAGCTGGCCC
TCCAGCTGGCGCACTACAAGGACATGGGCAAGTTTTGCCTCACATACGAGGCCTCCATGACCCGGCTCTTCCGAGAGGGGAGGACGGAGA
CCGTGCGCTCCTGCACCACTGAGTCATGCGACTTCGTGCGGGCCATGGTGGACCCGGCCCAGACGGTGGAACAGAGGCTGAAGTTGTTCA
AGTTGGCGTCTGAGAAGCATCAGCATATGTATCGCCTCGCCATGACCGGCTCTGGGATCGATCGTCACCTCTTCTGCCTTTACGTGGTGT
CTAAATATCTCGCTGTGGAGTCCCCTTTCCTTAAGGAAGTTTTATCTGAGCCTTGGAGATTATCAACAAGCCAGACCCCTCAGCAGCAAG
TGGAGCTGTTTGACTTGGAGAATAACCCAGAGTACGTGTCCAGCGGAGGGGGCTTTGGACCGGTTGCTGATGACGGCTATGGTGTGTCGT
ACATCCTTGTGGGAGAGAACCTCATCAATTTCCACATTTCTTCCAAGTTCTCTTGCCCTGAGACGCATATATTTTGTGAAGAGTGCATGA
CCTTATGGTTTAACAGAGAGAAAACATGTCCACTCTGCAGAACTGTGATTTCAGACCATATAAACAAATGGAAGGATGGAGCCACTTCAT
CACACCTTCAAATATATTAAGTTGTATAAACTATCAAGGCCACAAAATACTAATGTCATTTGGTCATAATGACTACTGATAAGGCATCAG
AATGGATTTTCAGGGCTACCAGAAAAATGTTTCCAGATGGTTTTAGAATGTAGGACTTATGATCCAATTCACCAAAAGATTAAATGAAAC
CACCCTGTGTTTTAAAATATATATAATGTTCAACCTAATGTATATGCAACATTTATTCTATTCTAATTATTTGACAGGTAACTGCAGTGT
TAAATTGTAAATGTGTTTTCTTTATGTTACCAAAACAGCAATTTGAAATTAGAACTAGTGGTTTTAGAGAACTCAGGTATTCTTTCCTGA
CATTGTTTTCAGAATAAAGAATATTTTTCATAATATTTTAAGATACATACTATCTAAAAGTAGAATTTTGTTCAGCATTGACTTTTATAA
TTCCCATCCTAAAAATTCTTAATATTTTCATAAAATTTGTATTTTTAAATGAAAATTCTAAATGTTGTATTTTATCAGTAACATTTTCTA
AGTGAAGATTAATTTACTGAGGATGATACATTATAGTATTGTATTATTCTCTGTAGTAAGATTAGTAATAAGTGAAAATAAATGATTTAA
ATTCATTTTGTCTCTGGACGTCATAAATTCTTCCTGCCATCAGCTTTAATGTTCATGATCATGCTTTTTGTATAGTACCATGGAGTATCT

>In-frame_ENST00000376618_ENST00000305783_TCGA-L5-A8NH_CPT1A_chr11_68527037_-_RNFT1_chr17_58030472_length(amino acids)=796AA_start in transcript=149_stop in transcript=2539
MTRYSLKMAEAHQAVAFQFTVTPDGIDLRLSHEALRQIYLSGLHSWKKKFIRFKNGIITGVYPASPSSWLIVVVGVMTTMYAKIDPSLGI
IAKINRTLETANCMSSQTKNVVSGVLFGTGLWVALIVTMRYSLKVLLSYHGWMFTEHGKMSRATKIWMGMVKIFSGRKPMLYSFQTSLPR
LPVPAVKDTVNRYLQSVRPLMKEEDFKRMTALAQDFAVGLGPRLQWYLKLKSWWATNYVSDWWEEYIYLRGRGPLMVNSNYYAMDLLYIL
PTHIQAARAGNAIHAILLYRRKLDREEIKPIRLLGSTIPLCSAQWERMFNTSRIPGEETDTIQHMRDSKHIVVYHRGRYFKVWLYHDGRL
LKPREMEQQMQRILDNTSEPQPGEARLAALTAGDRVPWARCRQAYFGRGKNKQSLDAVEKAAFFVTLDETEEGYRSEDPDTSMDSYAKSL
LHGRCYDRWFDKSFTFVVFKNGKMGLNAEHSWADAPIVAHLWEYVMSIDSLQLGYAEDGHCKGDINPNIPYPTRLQWDIPGECQEVIETS
LNTANLLANDVDFHSFPFVAFGKGIIKKCRTSPDAFVQLALQLAHYKDMGKFCLTYEASMTRLFREGRTETVRSCTTESCDFVRAMVDPA
QTVEQRLKLFKLASEKHQHMYRLAMTGSGIDRHLFCLYVVSKYLAVESPFLKEVLSEPWRLSTSQTPQQQVELFDLENNPEYVSSGGGFG

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>In-frame_ENST00000265641_ENST00000305783_TCGA-L5-A8NH_CPT1A_chr11_68527037_-_RNFT1_chr17_58030472_length(transcript)=3262nt_BP=2390nt
AATCCGCTGCTGCCGGCGTCGGGTGCGCTCGGCCTCGCCCGCGGCCCTCCTTCCCCGGCTCCCGCTCGCCGCTCGTTCACTCCACCGCCG
CCGCCGCCGCCGCCGCTGCCGCTGCCGCTGCCGCACCTCCGTAGCTGACTCGGTACTCTCTGAAGATGGCAGAAGCTCACCAAGCTGTGG
CCTTTCAGTTCACGGTCACTCCGGACGGGATTGACCTGCGGCTGAGCCATGAAGCTCTTAGACAAATCTATCTCTCTGGACTTCATTCCT
GGAAAAAGAAGTTCATCAGATTCAAGAACGGCATCATCACTGGCGTGTACCCGGCAAGCCCCTCCAGTTGGCTTATCGTGGTGGTGGGCG
TGATGACAACGATGTACGCCAAGATCGACCCCTCGTTAGGAATAATTGCAAAAATCAATCGGACTCTGGAAACGGCCAACTGCATGTCCA
GCCAGACGAAGAACGTGGTCAGCGGCGTGCTGTTTGGCACCGGCCTGTGGGTGGCCCTCATCGTCACCATGCGCTACTCCCTGAAAGTGC
TGCTCTCCTACCACGGGTGGATGTTCACTGAGCACGGCAAGATGAGTCGTGCCACCAAGATCTGGATGGGTATGGTCAAGATCTTTTCAG
GCCGAAAACCCATGTTGTACAGCTTCCAGACATCGCTGCCTCGCCTGCCGGTCCCGGCTGTCAAAGACACTGTGAACAGGTATCTACAGT
CGGTGAGGCCTCTTATGAAGGAAGAAGACTTCAAACGGATGACAGCACTTGCTCAAGATTTTGCTGTCGGTCTTGGACCAAGATTACAGT
GGTATTTGAAGTTAAAATCCTGGTGGGCTACAAATTACGTGAGCGACTGGTGGGAGGAGTACATCTACCTCCGAGGACGAGGGCCGCTCA
TGGTGAACAGCAACTATTATGCCATGGATCTGCTGTATATCCTTCCAACTCACATTCAGGCAGCAAGAGCCGGCAACGCCATCCATGCCA
TCCTGCTTTACAGGCGCAAACTGGACCGGGAGGAAATCAAACCAATTCGTCTTTTGGGATCCACGATTCCACTCTGCTCCGCTCAGTGGG
AGCGGATGTTTAATACTTCCCGGATCCCAGGAGAGGAGACAGACACCATCCAGCACATGAGAGACAGCAAGCACATCGTCGTGTACCATC
GAGGACGCTACTTCAAGGTCTGGCTCTACCATGATGGGCGGCTGCTGAAGCCCCGGGAGATGGAGCAGCAGATGCAGAGGATCCTGGACA
ATACCTCGGAGCCTCAGCCCGGGGAGGCCAGGCTGGCAGCCCTCACCGCAGGAGACAGAGTTCCCTGGGCCAGGTGTCGTCAGGCCTATT
TTGGACGTGGGAAAAATAAGCAGTCTCTTGATGCTGTGGAGAAAGCAGCGTTCTTTGTGACGTTAGATGAAACTGAAGAAGGATACAGAA
GTGAAGACCCGGATACGTCAATGGACAGCTACGCCAAATCTCTACTACACGGCCGATGTTACGACAGGTGGTTTGACAAGTCGTTCACGT
TTGTTGTCTTCAAAAACGGGAAGATGGGCCTCAACGCTGAACACTCCTGGGCAGATGCGCCGATCGTGGCCCACCTTTGGGAGTACGTCA
TGTCCATTGACAGCCTCCAGCTGGGCTATGCGGAGGATGGGCACTGCAAAGGCGACATCAATCCGAACATTCCGTACCCCACCAGGCTGC
AGTGGGACATCCCGGGGGAATGTCAAGAGGTTATAGAGACCTCCCTGAACACCGCAAATCTTCTGGCAAACGACGTGGATTTCCATTCCT
TCCCATTCGTAGCCTTTGGTAAAGGAATCATCAAGAAATGTCGCACGAGCCCAGACGCCTTTGTGCAGCTGGCCCTCCAGCTGGCGCACT
ACAAGGACATGGGCAAGTTTTGCCTCACATACGAGGCCTCCATGACCCGGCTCTTCCGAGAGGGGAGGACGGAGACCGTGCGCTCCTGCA
CCACTGAGTCATGCGACTTCGTGCGGGCCATGGTGGACCCGGCCCAGACGGTGGAACAGAGGCTGAAGTTGTTCAAGTTGGCGTCTGAGA
AGCATCAGCATATGTATCGCCTCGCCATGACCGGCTCTGGGATCGATCGTCACCTCTTCTGCCTTTACGTGGTGTCTAAATATCTCGCTG
TGGAGTCCCCTTTCCTTAAGGAAGTTTTATCTGAGCCTTGGAGATTATCAACAAGCCAGACCCCTCAGCAGCAAGTGGAGCTGTTTGACT
TGGAGAATAACCCAGAGTACGTGTCCAGCGGAGGGGGCTTTGGACCGGTTGCTGATGACGGCTATGGTGTGTCGTACATCCTTGTGGGAG
AGAACCTCATCAATTTCCACATTTCTTCCAAGTTCTCTTGCCCTGAGACGCATATATTTTGTGAAGAGTGCATGACCTTATGGTTTAACA
GAGAGAAAACATGTCCACTCTGCAGAACTGTGATTTCAGACCATATAAACAAATGGAAGGATGGAGCCACTTCATCACACCTTCAAATAT
ATTAAGTTGTATAAACTATCAAGGCCACAAAATACTAATGTCATTTGGTCATAATGACTACTGATAAGGCATCAGAATGGATTTTCAGGG
CTACCAGAAAAATGTTTCCAGATGGTTTTAGAATGTAGGACTTATGATCCAATTCACCAAAAGATTAAATGAAACCACCCTGTGTTTTAA
AATATATATAATGTTCAACCTAATGTATATGCAACATTTATTCTATTCTAATTATTTGACAGGTAACTGCAGTGTTAAATTGTAAATGTG
TTTTCTTTATGTTACCAAAACAGCAATTTGAAATTAGAACTAGTGGTTTTAGAGAACTCAGGTATTCTTTCCTGACATTGTTTTCAGAAT
AAAGAATATTTTTCATAATATTTTAAGATACATACTATCTAAAAGTAGAATTTTGTTCAGCATTGACTTTTATAATTCCCATCCTAAAAA
TTCTTAATATTTTCATAAAATTTGTATTTTTAAATGAAAATTCTAAATGTTGTATTTTATCAGTAACATTTTCTAAGTGAAGATTAATTT
ACTGAGGATGATACATTATAGTATTGTATTATTCTCTGTAGTAAGATTAGTAATAAGTGAAAATAAATGATTTAAATTCATTTTGTCTCT
GGACGTCATAAATTCTTCCTGCCATCAGCTTTAATGTTCATGATCATGCTTTTTGTATAGTACCATGGAGTATCTCGAAGTAACTATTAA

>In-frame_ENST00000265641_ENST00000305783_TCGA-L5-A8NH_CPT1A_chr11_68527037_-_RNFT1_chr17_58030472_length(amino acids)=796AA_start in transcript=134_stop in transcript=2524
MTRYSLKMAEAHQAVAFQFTVTPDGIDLRLSHEALRQIYLSGLHSWKKKFIRFKNGIITGVYPASPSSWLIVVVGVMTTMYAKIDPSLGI
IAKINRTLETANCMSSQTKNVVSGVLFGTGLWVALIVTMRYSLKVLLSYHGWMFTEHGKMSRATKIWMGMVKIFSGRKPMLYSFQTSLPR
LPVPAVKDTVNRYLQSVRPLMKEEDFKRMTALAQDFAVGLGPRLQWYLKLKSWWATNYVSDWWEEYIYLRGRGPLMVNSNYYAMDLLYIL
PTHIQAARAGNAIHAILLYRRKLDREEIKPIRLLGSTIPLCSAQWERMFNTSRIPGEETDTIQHMRDSKHIVVYHRGRYFKVWLYHDGRL
LKPREMEQQMQRILDNTSEPQPGEARLAALTAGDRVPWARCRQAYFGRGKNKQSLDAVEKAAFFVTLDETEEGYRSEDPDTSMDSYAKSL
LHGRCYDRWFDKSFTFVVFKNGKMGLNAEHSWADAPIVAHLWEYVMSIDSLQLGYAEDGHCKGDINPNIPYPTRLQWDIPGECQEVIETS
LNTANLLANDVDFHSFPFVAFGKGIIKKCRTSPDAFVQLALQLAHYKDMGKFCLTYEASMTRLFREGRTETVRSCTTESCDFVRAMVDPA
QTVEQRLKLFKLASEKHQHMYRLAMTGSGIDRHLFCLYVVSKYLAVESPFLKEVLSEPWRLSTSQTPQQQVELFDLENNPEYVSSGGGFG

--------------------------------------------------------------

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Fusion Gene PPI Analysis for CPT1A-RNFT1


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page.


check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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Related Drugs for CPT1A-RNFT1


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.8 2021-05-08)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status
HgeneCPT1AP50416DB01016GlyburideInhibitorSmall moleculeApproved
HgeneCPT1AP50416DB01016GlyburideInhibitorSmall moleculeApproved
HgeneCPT1AP50416DB00583LevocarnitineActivatorSmall moleculeApproved|Investigational
HgeneCPT1AP50416DB00583LevocarnitineActivatorSmall moleculeApproved|Investigational
HgeneCPT1AP50416DB01074PerhexilineInhibitorSmall moleculeApproved|Investigational
HgeneCPT1AP50416DB01074PerhexilineInhibitorSmall moleculeApproved|Investigational

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Related Diseases for CPT1A-RNFT1


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource
HgeneCPT1AC1829703Carnitine palmitoyl transferase 1A deficiency13CLINGEN;CTD_human;GENOMICS_ENGLAND;UNIPROT
HgeneCPT1AC0002152Alloxan Diabetes1CTD_human
HgeneCPT1AC0006142Malignant neoplasm of breast1CTD_human
HgeneCPT1AC0011849Diabetes Mellitus1CTD_human
HgeneCPT1AC0011853Diabetes Mellitus, Experimental1CTD_human
HgeneCPT1AC0011860Diabetes Mellitus, Non-Insulin-Dependent1CTD_human
HgeneCPT1AC0022661Kidney Failure, Chronic1CTD_human
HgeneCPT1AC0038433Streptozotocin Diabetes1CTD_human
HgeneCPT1AC0400966Non-alcoholic Fatty Liver Disease1CTD_human
HgeneCPT1AC0678222Breast Carcinoma1CTD_human
HgeneCPT1AC1257931Mammary Neoplasms, Human1CTD_human
HgeneCPT1AC1458155Mammary Neoplasms1CTD_human
HgeneCPT1AC3241937Nonalcoholic Steatohepatitis1CTD_human
HgeneCPT1AC4704874Mammary Carcinoma, Human1CTD_human