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Center for Computational Systems Medicine
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Fusion Gene Summary

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Fusion Gene ORF analysis

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Fusion Genomic Features

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Fusion Protein Features

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Fusion Gene Sequence

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Fusion Gene PPI analysis

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Related Drugs

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Related Diseases

Fusion gene:DDX42-BRIP1 (FusionGDB2 ID:21991)

Fusion Gene Summary for DDX42-BRIP1

check button Fusion gene summary
Fusion gene informationFusion gene name: DDX42-BRIP1
Fusion gene ID: 21991
HgeneTgene
Gene symbol

DDX42

BRIP1

Gene ID

11325

83990

Gene nameDEAD-box helicase 42BRCA1 interacting protein C-terminal helicase 1
SynonymsDDX42P|RHELP|RNAHP|SF3B8|SF3b125BACH1|FANCJ|OF
Cytomap

17q23.3

17q23.2

Type of geneprotein-codingprotein-coding
DescriptionATP-dependent RNA helicase DDX42DEAD (Asp-Glu-Ala-Asp) box helicase 42DEAD (Asp-Glu-Ala-Asp) box polypeptide 42SF3b DEAD box proteinsplicing factor 3B-associated 125 kDa proteinsplicing factor 3b, subunit 8Fanconi anemia group J proteinATP-dependent RNA helicase BRIP1BRCA1-associated C-terminal helicase 1BRCA1-binding helicase-like protein BACH1BRCA1/BRCA2-associated helicase 1
Modification date2020031320200315
UniProtAcc.

Q9BX63

Ensembl transtripts involved in fusion geneENST00000578681, ENST00000583590, 
ENST00000359353, ENST00000389924, 
ENST00000457800, ENST00000582985, 
ENST00000259008, ENST00000577598, 
ENST00000583837, 
Fusion gene scores* DoF score12 X 12 X 6=86412 X 15 X 7=1260
# samples 1413
** MAII scorelog2(14/864*10)=-2.6256044852185
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0		log2(13/1260*10)=-3.27684020535882
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
Context

PubMed: DDX42 [Title/Abstract] AND BRIP1 [Title/Abstract] AND fusion [Title/Abstract]

Most frequent breakpointDDX42(61884014)-BRIP1(59886118), # samples:4
Anticipated loss of major functional domain due to fusion event.
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
HgeneDDX42

GO:0008104

protein localization

19377511

TgeneBRIP1

GO:0006357

regulation of transcription by RNA polymerase II

14504288


check buttonFusion gene breakpoints across DDX42 (5'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.

check buttonFusion gene breakpoints across BRIP1 (3'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.

check button Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0)
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
SourceDiseaseSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
ChimerDB4BRCATCGA-A2-A25B-01ADDX42chr17

61884014

+BRIP1chr17

59886118

-
ChimerDB4BRCATCGA-A2-A25BDDX42chr17

61884014

+BRIP1chr17

59886118

-
ChimerDB4BRCATCGA-A2-A25B-01ADDX42chr17

61884014

+BRIP1chr17

59886118

-
ChimerDB4BRCATCGA-A2-A25B-01ADDX42chr17

61884014

-BRIP1chr17

59886118

-


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Fusion Gene ORF analysis for DDX42-BRIP1

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
In-frameENST00000578681ENST00000259008DDX42chr17

61884014

+BRIP1chr17

59886118

-
In-frameENST00000578681ENST00000577598DDX42chr17

61884014

+BRIP1chr17

59886118

-
5CDS-intronENST00000578681ENST00000583837DDX42chr17

61884014

+BRIP1chr17

59886118

-
In-frameENST00000583590ENST00000259008DDX42chr17

61884014

+BRIP1chr17

59886118

-
In-frameENST00000583590ENST00000577598DDX42chr17

61884014

+BRIP1chr17

59886118

-
5CDS-intronENST00000583590ENST00000583837DDX42chr17

61884014

+BRIP1chr17

59886118

-
In-frameENST00000359353ENST00000259008DDX42chr17

61884014

+BRIP1chr17

59886118

-
In-frameENST00000359353ENST00000577598DDX42chr17

61884014

+BRIP1chr17

59886118

-
5CDS-intronENST00000359353ENST00000583837DDX42chr17

61884014

+BRIP1chr17

59886118

-
In-frameENST00000389924ENST00000259008DDX42chr17

61884014

+BRIP1chr17

59886118

-
In-frameENST00000389924ENST00000577598DDX42chr17

61884014

+BRIP1chr17

59886118

-
5CDS-intronENST00000389924ENST00000583837DDX42chr17

61884014

+BRIP1chr17

59886118

-
In-frameENST00000457800ENST00000259008DDX42chr17

61884014

+BRIP1chr17

59886118

-
In-frameENST00000457800ENST00000577598DDX42chr17

61884014

+BRIP1chr17

59886118

-
5CDS-intronENST00000457800ENST00000583837DDX42chr17

61884014

+BRIP1chr17

59886118

-
intron-3CDSENST00000582985ENST00000259008DDX42chr17

61884014

+BRIP1chr17

59886118

-
intron-3CDSENST00000582985ENST00000577598DDX42chr17

61884014

+BRIP1chr17

59886118

-
intron-intronENST00000582985ENST00000583837DDX42chr17

61884014

+BRIP1chr17

59886118

-

check buttonORFfinder result based on the fusion transcript sequence of in-frame fusion genes.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandSeq length
(transcript)		BP loci
(transcript)		Predicted start
(transcript)		Predicted stop
(transcript)		Seq length
(amino acids)
ENST00000578681DDX42chr1761884014+ENST00000259008BRIP1chr1759886118-6600144757145691332
ENST00000578681DDX42chr1761884014+ENST00000577598BRIP1chr1759886118-4789144757138041077
ENST00000583590DDX42chr1761884014+ENST00000259008BRIP1chr1759886118-6411125841243801322
ENST00000583590DDX42chr1761884014+ENST00000577598BRIP1chr1759886118-4600125841236151067
ENST00000359353DDX42chr1761884014+ENST00000259008BRIP1chr1759886118-596581231139341207
ENST00000359353DDX42chr1761884014+ENST00000577598BRIP1chr1759886118-41548123113169952
ENST00000389924DDX42chr1761884014+ENST00000259008BRIP1chr1759886118-6185103218641541322
ENST00000389924DDX42chr1761884014+ENST00000577598BRIP1chr1759886118-4374103218633891067
ENST00000457800DDX42chr1761884014+ENST00000259008BRIP1chr1759886118-5999846039681322
ENST00000457800DDX42chr1761884014+ENST00000577598BRIP1chr1759886118-4188846032031067

check buttonDeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandNo-coding scoreCoding score
ENST00000578681ENST00000259008DDX42chr1761884014+BRIP1chr1759886118-0.0001804160.9998196
ENST00000578681ENST00000577598DDX42chr1761884014+BRIP1chr1759886118-0.0003014870.9996985
ENST00000583590ENST00000259008DDX42chr1761884014+BRIP1chr1759886118-0.0001457180.9998542
ENST00000583590ENST00000577598DDX42chr1761884014+BRIP1chr1759886118-0.0002385880.9997614
ENST00000359353ENST00000259008DDX42chr1761884014+BRIP1chr1759886118-0.0001258280.9998741
ENST00000359353ENST00000577598DDX42chr1761884014+BRIP1chr1759886118-0.0001366060.9998634
ENST00000389924ENST00000259008DDX42chr1761884014+BRIP1chr1759886118-0.000111490.99988854
ENST00000389924ENST00000577598DDX42chr1761884014+BRIP1chr1759886118-0.0001776530.9998223
ENST00000457800ENST00000259008DDX42chr1761884014+BRIP1chr1759886118-8.81E-050.9999119
ENST00000457800ENST00000577598DDX42chr1761884014+BRIP1chr1759886118-0.0001413140.9998586

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Fusion Genomic Features for DDX42-BRIP1


check buttonFusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints.
HgeneHchrHbpHstrandTgeneTchrTbpTstrand1-pp (fusion gene breakpoint)

check buttonDistribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page.

check buttonDistribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page.

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Fusion Protein Features for DDX42-BRIP1


check button Go to

FGviewer for the breakpoints of chr17:61884014-chr17:59886118

.
- FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels.
FGviewer

check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
.BRIP1

Q9BX63

FUNCTION: Might normally function as a transcriptional repressor. EWS-fusion-proteins (EFPS) may play a role in the tumorigenic process. They may disturb gene expression by mimicking, or interfering with the normal function of CTD-POLII within the transcription initiation complex. They may also contribute to an aberrant activation of the fusion protein target genes.FUNCTION: DNA-dependent ATPase and 5' to 3' DNA helicase required for the maintenance of chromosomal stability. Acts late in the Fanconi anemia pathway, after FANCD2 ubiquitination. Involved in the repair of DNA double-strand breaks by homologous recombination in a manner that depends on its association with BRCA1. {ECO:0000269|PubMed:11301010, ECO:0000269|PubMed:14983014, ECO:0000269|PubMed:16116421, ECO:0000269|PubMed:16153896}.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page


* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
HgeneDDX42chr17:61884014chr17:59886118ENST00000359353+717116_157163.0820.0Coiled coilOntology_term=ECO:0000255
HgeneDDX42chr17:61884014chr17:59886118ENST00000389924+818116_157282.0939.0Coiled coilOntology_term=ECO:0000255
HgeneDDX42chr17:61884014chr17:59886118ENST00000457800+717116_157282.0939.0Coiled coilOntology_term=ECO:0000255
HgeneDDX42chr17:61884014chr17:59886118ENST00000578681+919116_157282.0939.0Coiled coilOntology_term=ECO:0000255
HgeneDDX42chr17:61884014chr17:59886118ENST00000583590+919116_157282.0939.0Coiled coilOntology_term=ECO:0000255
HgeneDDX42chr17:61884014chr17:59886118ENST00000359353+71743_46163.0820.0Compositional biasNote=Poly-Ser
HgeneDDX42chr17:61884014chr17:59886118ENST00000389924+818175_178282.0939.0Compositional biasNote=Poly-Glu
HgeneDDX42chr17:61884014chr17:59886118ENST00000389924+81843_46282.0939.0Compositional biasNote=Poly-Ser
HgeneDDX42chr17:61884014chr17:59886118ENST00000457800+717175_178282.0939.0Compositional biasNote=Poly-Glu
HgeneDDX42chr17:61884014chr17:59886118ENST00000457800+71743_46282.0939.0Compositional biasNote=Poly-Ser
HgeneDDX42chr17:61884014chr17:59886118ENST00000578681+919175_178282.0939.0Compositional biasNote=Poly-Glu
HgeneDDX42chr17:61884014chr17:59886118ENST00000578681+91943_46282.0939.0Compositional biasNote=Poly-Ser
HgeneDDX42chr17:61884014chr17:59886118ENST00000583590+919175_178282.0939.0Compositional biasNote=Poly-Glu
HgeneDDX42chr17:61884014chr17:59886118ENST00000583590+91943_46282.0939.0Compositional biasNote=Poly-Ser
HgeneDDX42chr17:61884014chr17:59886118ENST00000389924+818253_281282.0939.0MotifNote=Q motif
HgeneDDX42chr17:61884014chr17:59886118ENST00000457800+717253_281282.0939.0MotifNote=Q motif
HgeneDDX42chr17:61884014chr17:59886118ENST00000578681+919253_281282.0939.0MotifNote=Q motif
HgeneDDX42chr17:61884014chr17:59886118ENST00000583590+919253_281282.0939.0MotifNote=Q motif
TgeneBRIP1chr17:61884014chr17:59886118ENST00000259008520393_396209.01250.0MotifNote=DEAH box

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
HgeneDDX42chr17:61884014chr17:59886118ENST00000359353+717175_178163.0820.0Compositional biasNote=Poly-Glu
HgeneDDX42chr17:61884014chr17:59886118ENST00000359353+717654_659163.0820.0Compositional biasNote=Poly-Gly
HgeneDDX42chr17:61884014chr17:59886118ENST00000359353+717762_883163.0820.0Compositional biasNote=Gly-rich
HgeneDDX42chr17:61884014chr17:59886118ENST00000359353+717819_871163.0820.0Compositional biasNote=His-rich
HgeneDDX42chr17:61884014chr17:59886118ENST00000389924+818654_659282.0939.0Compositional biasNote=Poly-Gly
HgeneDDX42chr17:61884014chr17:59886118ENST00000389924+818762_883282.0939.0Compositional biasNote=Gly-rich
HgeneDDX42chr17:61884014chr17:59886118ENST00000389924+818819_871282.0939.0Compositional biasNote=His-rich
HgeneDDX42chr17:61884014chr17:59886118ENST00000457800+717654_659282.0939.0Compositional biasNote=Poly-Gly
HgeneDDX42chr17:61884014chr17:59886118ENST00000457800+717762_883282.0939.0Compositional biasNote=Gly-rich
HgeneDDX42chr17:61884014chr17:59886118ENST00000457800+717819_871282.0939.0Compositional biasNote=His-rich
HgeneDDX42chr17:61884014chr17:59886118ENST00000578681+919654_659282.0939.0Compositional biasNote=Poly-Gly
HgeneDDX42chr17:61884014chr17:59886118ENST00000578681+919762_883282.0939.0Compositional biasNote=Gly-rich
HgeneDDX42chr17:61884014chr17:59886118ENST00000578681+919819_871282.0939.0Compositional biasNote=His-rich
HgeneDDX42chr17:61884014chr17:59886118ENST00000583590+919654_659282.0939.0Compositional biasNote=Poly-Gly
HgeneDDX42chr17:61884014chr17:59886118ENST00000583590+919762_883282.0939.0Compositional biasNote=Gly-rich
HgeneDDX42chr17:61884014chr17:59886118ENST00000583590+919819_871282.0939.0Compositional biasNote=His-rich
HgeneDDX42chr17:61884014chr17:59886118ENST00000359353+717284_459163.0820.0DomainHelicase ATP-binding
HgeneDDX42chr17:61884014chr17:59886118ENST00000359353+717487_632163.0820.0DomainHelicase C-terminal
HgeneDDX42chr17:61884014chr17:59886118ENST00000389924+818284_459282.0939.0DomainHelicase ATP-binding
HgeneDDX42chr17:61884014chr17:59886118ENST00000389924+818487_632282.0939.0DomainHelicase C-terminal
HgeneDDX42chr17:61884014chr17:59886118ENST00000457800+717284_459282.0939.0DomainHelicase ATP-binding
HgeneDDX42chr17:61884014chr17:59886118ENST00000457800+717487_632282.0939.0DomainHelicase C-terminal
HgeneDDX42chr17:61884014chr17:59886118ENST00000578681+919284_459282.0939.0DomainHelicase ATP-binding
HgeneDDX42chr17:61884014chr17:59886118ENST00000578681+919487_632282.0939.0DomainHelicase C-terminal
HgeneDDX42chr17:61884014chr17:59886118ENST00000583590+919284_459282.0939.0DomainHelicase ATP-binding
HgeneDDX42chr17:61884014chr17:59886118ENST00000583590+919487_632282.0939.0DomainHelicase C-terminal
HgeneDDX42chr17:61884014chr17:59886118ENST00000359353+717253_281163.0820.0MotifNote=Q motif
HgeneDDX42chr17:61884014chr17:59886118ENST00000359353+717407_410163.0820.0MotifNote=DEAD box
HgeneDDX42chr17:61884014chr17:59886118ENST00000389924+818407_410282.0939.0MotifNote=DEAD box
HgeneDDX42chr17:61884014chr17:59886118ENST00000457800+717407_410282.0939.0MotifNote=DEAD box
HgeneDDX42chr17:61884014chr17:59886118ENST00000578681+919407_410282.0939.0MotifNote=DEAD box
HgeneDDX42chr17:61884014chr17:59886118ENST00000583590+919407_410282.0939.0MotifNote=DEAD box
HgeneDDX42chr17:61884014chr17:59886118ENST00000359353+717297_304163.0820.0Nucleotide bindingATP
HgeneDDX42chr17:61884014chr17:59886118ENST00000389924+818297_304282.0939.0Nucleotide bindingATP
HgeneDDX42chr17:61884014chr17:59886118ENST00000457800+717297_304282.0939.0Nucleotide bindingATP
HgeneDDX42chr17:61884014chr17:59886118ENST00000578681+919297_304282.0939.0Nucleotide bindingATP
HgeneDDX42chr17:61884014chr17:59886118ENST00000583590+919297_304282.0939.0Nucleotide bindingATP
TgeneBRIP1chr17:61884014chr17:59886118ENST0000025900852011_442209.01250.0DomainHelicase ATP-binding
TgeneBRIP1chr17:61884014chr17:59886118ENST00000259008520158_175209.01250.0MotifNuclear localization signal
TgeneBRIP1chr17:61884014chr17:59886118ENST00000259008520185_192209.01250.0Nucleotide bindingATP


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Fusion Gene Sequence for DDX42-BRIP1


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones.
>In-frame_ENST00000578681_ENST00000259008_TCGA-A2-A25B-01A_DDX42_chr17_61884014_+_BRIP1_chr17_59886118_length(transcript)=6600nt_BP=1447nt
CAAGAGTGTCGCTCTAGTAGTATATGCAACAGTTTAAACTATAGGCATGTTCATGTAAATATGGTTTCTGTCCAACCCGTTTTCTCTTGG
GATTTTTGGCTAGCCCCTTGACGCCACTTTTTCTTCATTCGCAGACCCACTTTCTAGATGGGTCATGAACACTGTCCACCCAACTGCAGT
TTCCCGTCAGAGTATCTGAGGAGCCTGTGAGGCGTTCTGGAGCTTTAAGGTCAGGCGCCTTCCGGGAGCCGTAGCCCCGGCCCCGCCCTT
CTGCCCGCGCGTTCCTCACTGCGCATGTCGCGTTTTTGTTCCCCTCCCCCCTTCAGCAACGGGCCGTGAGGCGGTGGCGGTGGTGGCGGT
GGCGGCGGCGGTGGTGGTGGTGGCGGCGGCGGCGGCGAAGGGGGCGGAGAGGAAGGAGCGCGGCGGGACCGGGCCGGGACAGCGCGTACT
TTGGGCTCCGGGATTCGCTCCGCGCCCGCGGTTGTAGCAGCTGCCGCTGCAGCCATAGCAGCAGGACTTCCTCAAGCGCAGGGACTATGT
CTTAAGGCGCTTTGCAGAGCCAAGCTCATTTCTGGCACATAAGAGGTCAGTCATTGGCACCATGAACTGGAATAAAGGTGGTCCTGGCAC
TAAGCGAGGATTTGGCTTTGGAGGTTTTGCCATCAGTGCTGGGAAAAAGGAGGAACCCAAACTCCCACAGCAGTCCCACAGTGCCTTTGG
GGCAACCAGCTCTTCTTCTGGATTTGGAAAGTCAGCTCCACCACAGCTTCCTTCTTTCTACAAAATTGGATCTAAGCGGGCCAACTTTGA
TGAAGAAAATGCCTATTTTGAAGATGAGGAAGAAGATTCTAGCAACGTTGATTTACCTTACATTCCTGCTGAAAACTCACCAACTCGCCA
GCAATTCCATTCCAAGCCAGTAGATTCTGACAGCGATGATGATCCCTTGGAGGCATTCATGGCTGAAGTGGAGGATCAGGCAGCTAGAGA
CATGAAGAGGCTTGAAGAAAAGGACAAGGAAAGAAAAAACGTAAAGGGTATTCGAGATGACATTGAAGAGGAAGATGACCAAGAAGCTTA
TTTTCGATACATGGCAGAAAACCCAACTGCTGGTGTGGTTCAGGAGGAAGAGGAAGACAATCTAGAATATGATAGTGACGGAAATCCAAT
TGCACCTACCAAAAAAATCATTGATCCTCTTCCCCCCATTGATCATTCAGAGATTGACTATCCACCATTTGAAAAAAACTTTTACAATGA
GCATGAAGAGATAACCAACCTCACTCCACAGCAGTTAATAGATCTCCGGCATAAGCTCAATCTTCGGGTCTCTGGTGCTGCACCTCCTAG
ACCAGGAAGTAGCTTTGCTCATTTTGGGTTTGACGAACAACTTATGCACCAGATTCGGAAATCTGAATACACACAGCCCACTCCAATACA
GTGCCAGCCCCCTGGCCACTGTTCTAGGTGCTGTTGTTCTACTAAACAAGGAAACAGTCAAGAGTCATCGAATACCATTAAGAAGGATCA
TACAGGGAAATCCAAGATACCCAAAATATATTTTGGGACACGCACACACAAGCAGATTGCTCAGATTACTAGAGAGCTCCGGAGGACGGC
ATATTCAGGGGTTCCAATGACTATTCTTTCCAGCAGGGATCATACTTGTGTCCATCCTGAGGTAGTCGGTAACTTCAACAGAAATGAGAA
GTGCATGGAATTGCTAGATGGGAAAAACGGAAAATCCTGCTATTTTTATCATGGAGTTCATAAAATTAGTGATCAGCACACATTACAGAC
TTTCCAAGGGATGTGCAAAGCCTGGGATATAGAAGAACTTGTCAGCCTGGGGAAGAAACTAAAGGCCTGTCCATATTACACAGCCCGAGA
ACTAATACAAGATGCTGACATCATATTTTGTCCCTACAACTATCTTCTAGATGCACAAATAAGGGAAAGTATGGATTTAAATCTGAAAGA
ACAGGTTGTCATTTTAGATGAAGCTCATAACATCGAGGACTGTGCTCGGGAATCAGCAAGTTACAGTGTAACAGAAGTTCAGCTTCGGTT
TGCTCGGGATGAACTAGATAGTATGGTCAACAATAATATAAGGAAGAAAGATCATGAACCCCTACGAGCTGTGTGCTGTAGCCTCATTAA
TTGGTTAGAAGCAAACGCTGAATATCTTGTAGAAAGAGATTATGAATCAGCTTGTAAAATATGGAGTGGAAATGAAATGCTCTTAACTTT
ACACAAAATGGGTATCACCACTGCTACTTTTCCCATTTTGCAGGGACATTTTTCTGCTGTTCTTCAAAAAGAGGAAAAAATCTCACCAAT
TTATGGTAAAGAGGAGGCAAGAGAAGTACCTGTTATTAGTGCATCAACTCAAATAATGCTTAAAGGACTTTTTATGGTACTTGACTATCT
TTTTAGGCAAAATAGCAGATTTGCAGATGATTATAAAATTGCGATTCAACAGACTTACTCCTGGACAAATCAGATTGATATTTCAGACAA
AAATGGGTTGTTGGTTCTACCAAAAAATAAGAAACGTTCACGACAGAAAACTGCAGTTCATGTGCTAAACTTTTGGTGCTTAAATCCAGC
TGTGGCCTTTTCAGATATTAATGGCAAAGTTCAGACCATTGTTTTGACATCTGGTACATTATCACCAATGAAATCCTTTTCGTCAGAACT
TGGTGTTACATTTACTATCCAGCTGGAGGCTAATCATATCATTAAAAATTCACAGGTTTGGGTTGGTACCATTGGGTCAGGCCCCAAGGG
TCGGAATCTCTGTGCTACCTTCCAGAATACTGAAACATTTGAGTTCCAAGATGAAGTGGGAGCACTTTTGTTATCTGTGTGCCAGACTGT
GAGCCAAGGAATTTTGTGTTTCTTGCCATCTTACAAGTTATTAGAAAAATTAAAAGAACGTTGGCTCTCTACTGGTTTATGGCATAATCT
GGAGTTGGTGAAGACAGTCATTGTAGAACCACAGGGAGGAGAAAAAACAAATTTTGATGAATTACTGCAGGTGTACTATGACGCAATCAA
ATACAAAGGAGAGAAAGATGGAGCTCTCCTGGTAGCAGTTTGTCGTGGTAAAGTGAGTGAGGGTCTGGATTTCTCAGATGACAATGCCCG
TGCTGTCATAACAATAGGAATTCCTTTTCCAAATGTGAAAGATCTACAGGTTGAACTAAAACGACAATACAATGACCACCATTCAAAATT
GAGAGGTCTTCTACCTGGCCGTCAGTGGTATGAAATTCAAGCATACAGGGCCTTAAACCAGGCCCTTGGTAGATGTATTAGACACAGAAA
TGATTGGGGAGCTCTTATTCTAGTGGATGATCGCTTTAGGAATAACCCAAGTCGCTATATATCTGGACTTTCTAAATGGGTACGGCAGCA
GATTCAGCACCATTCAACCTTTGAAAGTGCACTGGAATCCTTGGCTGAATTTTCCAAAAAGCATCAAAAAGTTCTTAATGTATCCATAAA
GGACAGAACCAATATACAGGACAATGAGTCTACACTTGAAGTGACCTCTTTAAAGTACAGTACCTCACCTTATTTACTGGAAGCAGCAAG
TCATCTATCACCAGAAAATTTTGTGGAAGATGAAGCAAAGATATGTGTCCAGGAACTACAGTGTCCTAAAATTATTACCAAAAATTCACC
TCTACCAAGTAGCATTATCTCCAGAAAGGAGAAAAATGATCCAGTATTCCTGGAAGAAGCAGGGAAAGCAGAAAAAATTGTGATTTCCAG
ATCCACAAGCCCAACTTTCAACAAACAAACAAAGAGAGTTAGCTGGTCAAGCTTTAATTCTTTGGGACAGTATTTTACTGGTAAAATACC
GAAGGCAACACCTGAGCTCGGGTCATCAGAGAATAGTGCCTCTAGTCCTCCCCGTTTCAAAACAGAGAAGATGGAAAGTAAAACTGTTTT
GCCCTTCACTGATAAATGTGAATCCTCAAATCTGACAGTAAACACATCGTTTGGATCATGCCCTCAATCAGAAACCATTATTTCATCATT
AAAGATTGATGCCACCCTTACTAGAAAAAATCATTCTGAACATCCGCTCTGTTCTGAAGAAGCCCTGGATCCAGACATTGAATTGTCTCT
AGTAAGTGAAGAAGATAAACAGTCCACTTCAAATAGAGATTTTGAAACAGAAGCAGAAGATGAATCTATCTATTTTACACCTGAACTTTA
TGATCCTGAAGATACAGATGAAGAAAAAAATGACCTAGCTGAAACTGATAGAGGAAATAGATTGGCTAACAATTCAGATTGCATTTTAGC
TAAAGACCTTTTTGAAATTAGAACTATAAAAGAAGTAGATTCAGCCAGAGAAGTGAAAGCTGAGGATTGCATAGATACAAAGTTGAATGG
AATTCTGCATATTGAAGAAAGTAAAATTGATGACATTGATGGTAATGTAAAAACAACTTGGATAAATGAACTGGAACTGGGAAAAACTCA
TGAAATAGAAATAAAGAACTTTAAACCATCTCCTTCCAAAAATAAAGGCATGTTTCCTGGTTTTAAGTAATAATACTTAACTCTCAAGCT
AAGTAAAAATATGTCATCATGCTTATGTTAAACTCTGTTGTAAGTAATAATTTGTAAATTGAATAAGTGGCATACTTTTTAAAAAACTAT
TTTATGTTCAGAAATGTAAATGTTATTATTCTTGAGTTTTTGGGTTTTTTTTTTTGAGACAGAGTCTTGGTCTGTTGCCCAGGCTGGAAT
GCAGTGGTGTGCTCTGGGCTCACTGCAACCTTCACCTCCAGGTTCAAGTGATTCTCCTGCCTCAGCCTTCTGAGTAGCTGGGACTACAGG
TGTGCACCACCATGCCCAGCTAGTTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGGCCTC
GTGATCTGCCCTTCTCTGCCTCCCTAAGTTGCTGGGATTACAGGTGTGAGCCACAGTGCCTGGCCCATTCTTGAGTTTTGATAAAGTAAT
TCATACAAAGTACTGTCCTCAAATAAGTCTTCCTTAGCTAAATGCAATTTAAAATTATTCAAAGATCCTAGGGCACTTCTAGTTTCACGT
AAATATTCATATTAGGTGGTTCTCTTCATCCATTTGTTTTCACACTGATACATAAAAATTAACAGCAGTCTAATCTAGTGACACCTCAGT
CATATTTCGCTATAGATTTTACCTCAAATCAGTCCAAGACTTTTTCAGAGATCACCATTTGTCTTGAAAGGTTTATTTCGTTATTAAACT
GCCTACTTATAAGTAATTAAGAGAAATTAAGAAAGTAGTATGCATTTTTAATTGAAATTGTTTTACATTCTTTGTATAATAAACCTAAAA
CCAAACATGTCATAAACAAATTGACGTAAAGATATAAAATGCCAAATGAAGTATTCCAAATTTTCTATTCTAATTATTTAGCTTCACCAT
CATTGTGGAAAAAAATACTAGATCCTGCTTAGTATTATATATTTTTCCTAGTGGATCAGTGAGTAATAAGTACCAAACACTAGACTAGAA
GGTAATTTCTACATTGTTTAGAAAGGGTGAAACAATTTATCCCCTCTGGTATTGTTCTAGCATAAGCTTTAGTTATACAATGATTAAGAT
AGAAAACTTCATATATAAATTTGATAAGCAAACCCACATTTATAGCTGCAGCTAAAATATGTTTCCTTAGGGCACAGTAATCCTTTCTGT
GAATTTTGACCTTGTTTGTGTTTTTGTGAATGAAGCTATATGTCTAATCAAAAATGATTATAAAAGAGGCTCATCTCTGACATCATTCCA
AAAATACATTCATTGATCTCTTTTTAAGAAACATCTGTTATTCACTGGGCATTGGGACTTTTTGTGAGTAATTTGAATTGAAATTTTATG
AGCTATCCAAGAATTCTGTATGGTCTATTATTTTCAAGTCAAAATTTCCAGTAAGGATTTACTTTACATTTCATTTGGATAAATGAATCA
TTATATAGGTATGTCTTTGCTTCCATTTTGAGACATTTAGATTTTTACAGCCTGTTTCTATAGCATTTGATGTTACAACTCTAAGCGTAG
TTCAAAGACATTTAAATTGACAAGTTACCAGTTAAAGAATTTAGAATATATTAGATCCCATCTAGTATTATATATTTTTTCTAGTTGATC
ATTGAGCAGTAAATACCAAATACTCGATTAGAAGGTAATTTTTACATTGTTTTGAAAGGGTGAAACAATTTATCTCCTCTGGTATTATTC
TTAAACCACAGATAGGGATAGTAGGGTAGTGAAACGAATAAATACCTGGTAGAAGACAAGAGACTTGGGCTCTACACCTGGCTCTGCCAC
TGATTTGCTAAGTCATATTGGCAATCACCACACCCTTCAGGGAATTAGTTTCATCTGTAAAATGCAGCGGTTAGTACTATAAAATCATAC
AAATTTCTTTGTGCTTTGAGAATCTATAAAGGAATGTCTGTTGATATTCTGAGTCGATTTTCATTTGCTTTTGTTCCAGAACGGTTAAAA

>In-frame_ENST00000578681_ENST00000259008_TCGA-A2-A25B-01A_DDX42_chr17_61884014_+_BRIP1_chr17_59886118_length(amino acids)=1332AA_start in transcript=571_stop in transcript=4569
MAHKRSVIGTMNWNKGGPGTKRGFGFGGFAISAGKKEEPKLPQQSHSAFGATSSSSGFGKSAPPQLPSFYKIGSKRANFDEENAYFEDEE
EDSSNVDLPYIPAENSPTRQQFHSKPVDSDSDDDPLEAFMAEVEDQAARDMKRLEEKDKERKNVKGIRDDIEEEDDQEAYFRYMAENPTA
GVVQEEEEDNLEYDSDGNPIAPTKKIIDPLPPIDHSEIDYPPFEKNFYNEHEEITNLTPQQLIDLRHKLNLRVSGAAPPRPGSSFAHFGF
DEQLMHQIRKSEYTQPTPIQCQPPGHCSRCCCSTKQGNSQESSNTIKKDHTGKSKIPKIYFGTRTHKQIAQITRELRRTAYSGVPMTILS
SRDHTCVHPEVVGNFNRNEKCMELLDGKNGKSCYFYHGVHKISDQHTLQTFQGMCKAWDIEELVSLGKKLKACPYYTARELIQDADIIFC
PYNYLLDAQIRESMDLNLKEQVVILDEAHNIEDCARESASYSVTEVQLRFARDELDSMVNNNIRKKDHEPLRAVCCSLINWLEANAEYLV
ERDYESACKIWSGNEMLLTLHKMGITTATFPILQGHFSAVLQKEEKISPIYGKEEAREVPVISASTQIMLKGLFMVLDYLFRQNSRFADD
YKIAIQQTYSWTNQIDISDKNGLLVLPKNKKRSRQKTAVHVLNFWCLNPAVAFSDINGKVQTIVLTSGTLSPMKSFSSELGVTFTIQLEA
NHIIKNSQVWVGTIGSGPKGRNLCATFQNTETFEFQDEVGALLLSVCQTVSQGILCFLPSYKLLEKLKERWLSTGLWHNLELVKTVIVEP
QGGEKTNFDELLQVYYDAIKYKGEKDGALLVAVCRGKVSEGLDFSDDNARAVITIGIPFPNVKDLQVELKRQYNDHHSKLRGLLPGRQWY
EIQAYRALNQALGRCIRHRNDWGALILVDDRFRNNPSRYISGLSKWVRQQIQHHSTFESALESLAEFSKKHQKVLNVSIKDRTNIQDNES
TLEVTSLKYSTSPYLLEAASHLSPENFVEDEAKICVQELQCPKIITKNSPLPSSIISRKEKNDPVFLEEAGKAEKIVISRSTSPTFNKQT
KRVSWSSFNSLGQYFTGKIPKATPELGSSENSASSPPRFKTEKMESKTVLPFTDKCESSNLTVNTSFGSCPQSETIISSLKIDATLTRKN
HSEHPLCSEEALDPDIELSLVSEEDKQSTSNRDFETEAEDESIYFTPELYDPEDTDEEKNDLAETDRGNRLANNSDCILAKDLFEIRTIK

--------------------------------------------------------------
>In-frame_ENST00000578681_ENST00000577598_TCGA-A2-A25B-01A_DDX42_chr17_61884014_+_BRIP1_chr17_59886118_length(transcript)=4789nt_BP=1447nt
CAAGAGTGTCGCTCTAGTAGTATATGCAACAGTTTAAACTATAGGCATGTTCATGTAAATATGGTTTCTGTCCAACCCGTTTTCTCTTGG
GATTTTTGGCTAGCCCCTTGACGCCACTTTTTCTTCATTCGCAGACCCACTTTCTAGATGGGTCATGAACACTGTCCACCCAACTGCAGT
TTCCCGTCAGAGTATCTGAGGAGCCTGTGAGGCGTTCTGGAGCTTTAAGGTCAGGCGCCTTCCGGGAGCCGTAGCCCCGGCCCCGCCCTT
CTGCCCGCGCGTTCCTCACTGCGCATGTCGCGTTTTTGTTCCCCTCCCCCCTTCAGCAACGGGCCGTGAGGCGGTGGCGGTGGTGGCGGT
GGCGGCGGCGGTGGTGGTGGTGGCGGCGGCGGCGGCGAAGGGGGCGGAGAGGAAGGAGCGCGGCGGGACCGGGCCGGGACAGCGCGTACT
TTGGGCTCCGGGATTCGCTCCGCGCCCGCGGTTGTAGCAGCTGCCGCTGCAGCCATAGCAGCAGGACTTCCTCAAGCGCAGGGACTATGT
CTTAAGGCGCTTTGCAGAGCCAAGCTCATTTCTGGCACATAAGAGGTCAGTCATTGGCACCATGAACTGGAATAAAGGTGGTCCTGGCAC
TAAGCGAGGATTTGGCTTTGGAGGTTTTGCCATCAGTGCTGGGAAAAAGGAGGAACCCAAACTCCCACAGCAGTCCCACAGTGCCTTTGG
GGCAACCAGCTCTTCTTCTGGATTTGGAAAGTCAGCTCCACCACAGCTTCCTTCTTTCTACAAAATTGGATCTAAGCGGGCCAACTTTGA
TGAAGAAAATGCCTATTTTGAAGATGAGGAAGAAGATTCTAGCAACGTTGATTTACCTTACATTCCTGCTGAAAACTCACCAACTCGCCA
GCAATTCCATTCCAAGCCAGTAGATTCTGACAGCGATGATGATCCCTTGGAGGCATTCATGGCTGAAGTGGAGGATCAGGCAGCTAGAGA
CATGAAGAGGCTTGAAGAAAAGGACAAGGAAAGAAAAAACGTAAAGGGTATTCGAGATGACATTGAAGAGGAAGATGACCAAGAAGCTTA
TTTTCGATACATGGCAGAAAACCCAACTGCTGGTGTGGTTCAGGAGGAAGAGGAAGACAATCTAGAATATGATAGTGACGGAAATCCAAT
TGCACCTACCAAAAAAATCATTGATCCTCTTCCCCCCATTGATCATTCAGAGATTGACTATCCACCATTTGAAAAAAACTTTTACAATGA
GCATGAAGAGATAACCAACCTCACTCCACAGCAGTTAATAGATCTCCGGCATAAGCTCAATCTTCGGGTCTCTGGTGCTGCACCTCCTAG
ACCAGGAAGTAGCTTTGCTCATTTTGGGTTTGACGAACAACTTATGCACCAGATTCGGAAATCTGAATACACACAGCCCACTCCAATACA
GTGCCAGCCCCCTGGCCACTGTTCTAGGTGCTGTTGTTCTACTAAACAAGGAAACAGTCAAGAGTCATCGAATACCATTAAGAAGGATCA
TACAGGGAAATCCAAGATACCCAAAATATATTTTGGGACACGCACACACAAGCAGATTGCTCAGATTACTAGAGAGCTCCGGAGGACGGC
ATATTCAGGGGTTCCAATGACTATTCTTTCCAGCAGGGATCATACTTGTGTCCATCCTGAGGTAGTCGGTAACTTCAACAGAAATGAGAA
GTGCATGGAATTGCTAGATGGGAAAAACGGAAAATCCTGCTATTTTTATCATGGAGTTCATAAAATTAGTGATCAGCACACATTACAGAC
TTTCCAAGGGATGTGCAAAGCCTGGGATATAGAAGAACTTGTCAGCCTGGGGAAGAAACTAAAGGCCTGTCCATATTACACAGCCCGAGA
ACTAATACAAGATGCTGACATCATATTTTGTCCCTACAACTATCTTCTAGATGCACAAATAAGGGAAAGTATGGATTTAAATCTGAAAGA
ACAGGTTGTCATTTTAGATGAAGCTCATAACATCGAGGACTGTGCTCGGGAATCAGCAAGTTACAGTGTAACAGAAGTTCAGCTTCGGTT
TGCTCGGGATGAACTAGATAGTATGGTCAACAATAATATAAGGAAGAAAGATCATGAACCCCTACGAGCTGTGTGCTGTAGCCTCATTAA
TTGGTTAGAAGCAAACGCTGAATATCTTGTAGAAAGAGATTATGAATCAGCTTGTAAAATATGGAGTGGAAATGAAATGCTCTTAACTTT
ACACAAAATGGGTATCACCACTGCTACTTTTCCCATTTTGCAGGGACATTTTTCTGCTGTTCTTCAAAAAGAGGAAAAAATCTCACCAAT
TTATGGTAAAGAGGAGGCAAGAGAAGTACCTGTTATTAGTGCATCAACTCAAATAATGCTTAAAGGACTTTTTATGGTACTTGACTATCT
TTTTAGGCAAAATAGCAGATTTGCAGATGATTATAAAATTGCGATTCAACAGACTTACTCCTGGACAAATCAGATTGATATTTCAGACAA
AAATGGGTTGTTGGTTCTACCAAAAAATAAGAAACGTTCACGACAGAAAACTGCAGTTCATGTGCTAAACTTTTGGTGCTTAAATCCAGC
TGTGGCCTTTTCAGATATTAATGGCAAAGTTCAGACCATTGTTTTGACATCTGGTACATTATCACCAATGAAATCCTTTTCGTCAGAACT
TGGTGTTACATTTACTATCCAGCTGGAGGCTAATCATATCATTAAAAATTCACAGGTTTGGGTTGGTACCATTGGGTCAGGCCCCAAGGG
TCGGAATCTCTGTGCTACCTTCCAGAATACTGAAACATTTGAGTTCCAAGATGAAGTGGGAGCACTTTTGTTATCTGTGTGCCAGACTGT
GAGCCAAGGAATTTTGTGTTTCTTGCCATCTTACAAGTTATTAGAAAAATTAAAAGAACGTTGGCTCTCTACTGGTTTATGGCATAATCT
GGAGTTGGTGAAGACAGTCATTGTAGAACCACAGGGAGGAGAAAAAACAAATTTTGATGAATTACTGCAGGTGTACTATGACGCAATCAA
ATACAAAGGAGAGAAAGATGGAGCTCTCCTGGTAGCAGTTTGTCGTGGTAAAGTGAGTGAGGGTCTGGATTTCTCAGATGACAATGCCCG
TGCTGTCATAACAATAGGAATTCCTTTTCCAAATGTGAAAGATCTACAGGTTGAACTAAAACGACAATACAATGACCACCATTCAAAATT
GAGAGGTCTTCTACCTGGCCGTCAGTGGTATGAAATTCAAGCATACAGGGCCTTAAACCAGGCCCTTGGTAGATGTATTAGACACAGAAA
TGATTGGGGAGCTCTTATTCTAGTGGATGATCGCTTTAGGAATAACCCAAGTCGCTATATATCTGGACTTTCTAAATGGGTACGGCAGCA
GATTCAGCACCATTCAACCTTTGAAAGTGCACTGGAATCCTTGGCTGAATTTTCCAAAAAGCATCAAAAAGTTCTTAATGTATCCATAAA
GGACAGAACCAATATACAGGACAATGAGTCTACACTTGAAGTGACCTCTTTAAAGTACAGTACCTCACCTTATTTACTGGAAGCAGCAAG
TCATCTATCACCAGAAAATTTTGTGGAAGATGAAGCAAAGATATGTGTCCAGGAACTACAGTGTCCTAAAATTATTACCAAAAATTCACC
TCTACCAAGTAGCATTATCTCCAGAAAGGAGAAAAGTATGAAAAGTTCTTCCCATTTACCTTTGATAGAGAAGTCTTTCATTATATTTAG
TGAAATGATATTTATTTGGGTATAGATTAATTCCTTAAATATGGTGGTTTGTAATATAAGGTGTTATCATAAAATAGTGAAACAGTATGG
TGTACTGTAATGGGAACAAACTTTTGTCAGGAGACCAGAGCATATTTTCTGGTTTTCCACTAACTGGCTTTGCCACTTACTAGCTTTGTG
ATCATGAGCAAGTCATTTGTCCTTTTTGAGTCGTAATAGGAAAAAAAAAATGCCTGCCTAGCTATCCCTTCAGGTTGGGTTGTAAAGGTC
AAAATTATAAATATCACAGCATTGTAAAGTACCATGTAAGTGGTAGATGTTATTCTAAAGGCTATATAAAAATTTGGCCTAATTTTTATG
TAGATACTTCTATATGAACTACTTTTCCTATATAGATAGTTCTTATGAACTTATTTTTAGGAGGTGAGAGACATTTATTTTAAGTGATGA
AAAATAATATTTTAAAATATTTTGAAATAATCATCTGTATCAGATTGGCAAACTGTGGCCCATGGGCCAAATTTGGCCTGCTGCCTGTTT
TTGTAAATAAAGTTTAATGAAATGTAGTCATGCCCATTTATTTACATTTTAGAAACAACAGCAGAGTTGAGTATTTGTGTGTATTGCACT
AGAACAGCATAATTGAGTAGTCGCAACAGATACATTATGCTCCACAAAGCCTAAATATTACTATCTGGCCTATGACAGAAAAGGTTTGCC
AAACTCTGGTCTATTCCATTGGATATAATTTCAGTTGTTTTAATTCATATATCCAAGGCGGGTGGATCATCCGAGGTCAGGAGTCCGAGA
CCAGCCTGACCAGTGTGGTGAAACACCGTCTCTACTAAAAAAATACAAAAATTAGCTGGGTGTGGAGGCAGCTGTCTGTAATCCCAGCTA
CTCAGGAGGCTGAGGCAGGAGAATTGCTTGAACTGGGAGGTGGAGGTTGCAGTGAGCCAGGATTGCGCCATTGCACTCCAGCCTGGGCAA

>In-frame_ENST00000578681_ENST00000577598_TCGA-A2-A25B-01A_DDX42_chr17_61884014_+_BRIP1_chr17_59886118_length(amino acids)=1077AA_start in transcript=571_stop in transcript=3804
MAHKRSVIGTMNWNKGGPGTKRGFGFGGFAISAGKKEEPKLPQQSHSAFGATSSSSGFGKSAPPQLPSFYKIGSKRANFDEENAYFEDEE
EDSSNVDLPYIPAENSPTRQQFHSKPVDSDSDDDPLEAFMAEVEDQAARDMKRLEEKDKERKNVKGIRDDIEEEDDQEAYFRYMAENPTA
GVVQEEEEDNLEYDSDGNPIAPTKKIIDPLPPIDHSEIDYPPFEKNFYNEHEEITNLTPQQLIDLRHKLNLRVSGAAPPRPGSSFAHFGF
DEQLMHQIRKSEYTQPTPIQCQPPGHCSRCCCSTKQGNSQESSNTIKKDHTGKSKIPKIYFGTRTHKQIAQITRELRRTAYSGVPMTILS
SRDHTCVHPEVVGNFNRNEKCMELLDGKNGKSCYFYHGVHKISDQHTLQTFQGMCKAWDIEELVSLGKKLKACPYYTARELIQDADIIFC
PYNYLLDAQIRESMDLNLKEQVVILDEAHNIEDCARESASYSVTEVQLRFARDELDSMVNNNIRKKDHEPLRAVCCSLINWLEANAEYLV
ERDYESACKIWSGNEMLLTLHKMGITTATFPILQGHFSAVLQKEEKISPIYGKEEAREVPVISASTQIMLKGLFMVLDYLFRQNSRFADD
YKIAIQQTYSWTNQIDISDKNGLLVLPKNKKRSRQKTAVHVLNFWCLNPAVAFSDINGKVQTIVLTSGTLSPMKSFSSELGVTFTIQLEA
NHIIKNSQVWVGTIGSGPKGRNLCATFQNTETFEFQDEVGALLLSVCQTVSQGILCFLPSYKLLEKLKERWLSTGLWHNLELVKTVIVEP
QGGEKTNFDELLQVYYDAIKYKGEKDGALLVAVCRGKVSEGLDFSDDNARAVITIGIPFPNVKDLQVELKRQYNDHHSKLRGLLPGRQWY
EIQAYRALNQALGRCIRHRNDWGALILVDDRFRNNPSRYISGLSKWVRQQIQHHSTFESALESLAEFSKKHQKVLNVSIKDRTNIQDNES

--------------------------------------------------------------
>In-frame_ENST00000583590_ENST00000259008_TCGA-A2-A25B-01A_DDX42_chr17_61884014_+_BRIP1_chr17_59886118_length(transcript)=6411nt_BP=1258nt
ATATGCAACAGTTTAAACTATAGGCATGTTCATGTAAATATGGTTTCTGTCCAACCCGTTTTCTCTTGGGATTTTTGGCTAGCCCCTTGA
CGCCACTTTTTCTTCATTCGCAGACCCACTTTCTAGATGGGTCATGAACACTGTCCACCCAACTGCAGTTTCCCGTCAGAGTATCTGAGG
AGCCTGTGAGGCGTTCTGGAGCTTTAAGCAACGGGCCGTGAGGCGGTGGCGGTGGTGGCGGTGGCGGCGGCGGTGGTGGTGGTGGCGGCG
GCGGCGGCGAAGGGGGCGGAGAGGAAGGAGCGCGGCGGGACCGGGCCGGGACAGCGCGTACTTTGGGCTCCGGGATTCGCTCCGCGCCCG
CGGTTGTAGCAGCTGCCGCTGCAGCCATAGCAGCAGGTCAGTCATTGGCACCATGAACTGGAATAAAGGTGGTCCTGGCACTAAGCGAGG
ATTTGGCTTTGGAGGTTTTGCCATCAGTGCTGGGAAAAAGGAGGAACCCAAACTCCCACAGCAGTCCCACAGTGCCTTTGGGGCAACCAG
CTCTTCTTCTGGATTTGGAAAGTCAGCTCCACCACAGCTTCCTTCTTTCTACAAAATTGGATCTAAGCGGGCCAACTTTGATGAAGAAAA
TGCCTATTTTGAAGATGAGGAAGAAGATTCTAGCAACGTTGATTTACCTTACATTCCTGCTGAAAACTCACCAACTCGCCAGCAATTCCA
TTCCAAGCCAGTAGATTCTGACAGCGATGATGATCCCTTGGAGGCATTCATGGCTGAAGTGGAGGATCAGGCAGCTAGAGACATGAAGAG
GCTTGAAGAAAAGGACAAGGAAAGAAAAAACGTAAAGGGTATTCGAGATGACATTGAAGAGGAAGATGACCAAGAAGCTTATTTTCGATA
CATGGCAGAAAACCCAACTGCTGGTGTGGTTCAGGAGGAAGAGGAAGACAATCTAGAATATGATAGTGACGGAAATCCAATTGCACCTAC
CAAAAAAATCATTGATCCTCTTCCCCCCATTGATCATTCAGAGATTGACTATCCACCATTTGAAAAAAACTTTTACAATGAGCATGAAGA
GATAACCAACCTCACTCCACAGCAGTTAATAGATCTCCGGCATAAGCTCAATCTTCGGGTCTCTGGTGCTGCACCTCCTAGACCAGGAAG
TAGCTTTGCTCATTTTGGGTTTGACGAACAACTTATGCACCAGATTCGGAAATCTGAATACACACAGCCCACTCCAATACAGTGCCAGCC
CCCTGGCCACTGTTCTAGGTGCTGTTGTTCTACTAAACAAGGAAACAGTCAAGAGTCATCGAATACCATTAAGAAGGATCATACAGGGAA
ATCCAAGATACCCAAAATATATTTTGGGACACGCACACACAAGCAGATTGCTCAGATTACTAGAGAGCTCCGGAGGACGGCATATTCAGG
GGTTCCAATGACTATTCTTTCCAGCAGGGATCATACTTGTGTCCATCCTGAGGTAGTCGGTAACTTCAACAGAAATGAGAAGTGCATGGA
ATTGCTAGATGGGAAAAACGGAAAATCCTGCTATTTTTATCATGGAGTTCATAAAATTAGTGATCAGCACACATTACAGACTTTCCAAGG
GATGTGCAAAGCCTGGGATATAGAAGAACTTGTCAGCCTGGGGAAGAAACTAAAGGCCTGTCCATATTACACAGCCCGAGAACTAATACA
AGATGCTGACATCATATTTTGTCCCTACAACTATCTTCTAGATGCACAAATAAGGGAAAGTATGGATTTAAATCTGAAAGAACAGGTTGT
CATTTTAGATGAAGCTCATAACATCGAGGACTGTGCTCGGGAATCAGCAAGTTACAGTGTAACAGAAGTTCAGCTTCGGTTTGCTCGGGA
TGAACTAGATAGTATGGTCAACAATAATATAAGGAAGAAAGATCATGAACCCCTACGAGCTGTGTGCTGTAGCCTCATTAATTGGTTAGA
AGCAAACGCTGAATATCTTGTAGAAAGAGATTATGAATCAGCTTGTAAAATATGGAGTGGAAATGAAATGCTCTTAACTTTACACAAAAT
GGGTATCACCACTGCTACTTTTCCCATTTTGCAGGGACATTTTTCTGCTGTTCTTCAAAAAGAGGAAAAAATCTCACCAATTTATGGTAA
AGAGGAGGCAAGAGAAGTACCTGTTATTAGTGCATCAACTCAAATAATGCTTAAAGGACTTTTTATGGTACTTGACTATCTTTTTAGGCA
AAATAGCAGATTTGCAGATGATTATAAAATTGCGATTCAACAGACTTACTCCTGGACAAATCAGATTGATATTTCAGACAAAAATGGGTT
GTTGGTTCTACCAAAAAATAAGAAACGTTCACGACAGAAAACTGCAGTTCATGTGCTAAACTTTTGGTGCTTAAATCCAGCTGTGGCCTT
TTCAGATATTAATGGCAAAGTTCAGACCATTGTTTTGACATCTGGTACATTATCACCAATGAAATCCTTTTCGTCAGAACTTGGTGTTAC
ATTTACTATCCAGCTGGAGGCTAATCATATCATTAAAAATTCACAGGTTTGGGTTGGTACCATTGGGTCAGGCCCCAAGGGTCGGAATCT
CTGTGCTACCTTCCAGAATACTGAAACATTTGAGTTCCAAGATGAAGTGGGAGCACTTTTGTTATCTGTGTGCCAGACTGTGAGCCAAGG
AATTTTGTGTTTCTTGCCATCTTACAAGTTATTAGAAAAATTAAAAGAACGTTGGCTCTCTACTGGTTTATGGCATAATCTGGAGTTGGT
GAAGACAGTCATTGTAGAACCACAGGGAGGAGAAAAAACAAATTTTGATGAATTACTGCAGGTGTACTATGACGCAATCAAATACAAAGG
AGAGAAAGATGGAGCTCTCCTGGTAGCAGTTTGTCGTGGTAAAGTGAGTGAGGGTCTGGATTTCTCAGATGACAATGCCCGTGCTGTCAT
AACAATAGGAATTCCTTTTCCAAATGTGAAAGATCTACAGGTTGAACTAAAACGACAATACAATGACCACCATTCAAAATTGAGAGGTCT
TCTACCTGGCCGTCAGTGGTATGAAATTCAAGCATACAGGGCCTTAAACCAGGCCCTTGGTAGATGTATTAGACACAGAAATGATTGGGG
AGCTCTTATTCTAGTGGATGATCGCTTTAGGAATAACCCAAGTCGCTATATATCTGGACTTTCTAAATGGGTACGGCAGCAGATTCAGCA
CCATTCAACCTTTGAAAGTGCACTGGAATCCTTGGCTGAATTTTCCAAAAAGCATCAAAAAGTTCTTAATGTATCCATAAAGGACAGAAC
CAATATACAGGACAATGAGTCTACACTTGAAGTGACCTCTTTAAAGTACAGTACCTCACCTTATTTACTGGAAGCAGCAAGTCATCTATC
ACCAGAAAATTTTGTGGAAGATGAAGCAAAGATATGTGTCCAGGAACTACAGTGTCCTAAAATTATTACCAAAAATTCACCTCTACCAAG
TAGCATTATCTCCAGAAAGGAGAAAAATGATCCAGTATTCCTGGAAGAAGCAGGGAAAGCAGAAAAAATTGTGATTTCCAGATCCACAAG
CCCAACTTTCAACAAACAAACAAAGAGAGTTAGCTGGTCAAGCTTTAATTCTTTGGGACAGTATTTTACTGGTAAAATACCGAAGGCAAC
ACCTGAGCTCGGGTCATCAGAGAATAGTGCCTCTAGTCCTCCCCGTTTCAAAACAGAGAAGATGGAAAGTAAAACTGTTTTGCCCTTCAC
TGATAAATGTGAATCCTCAAATCTGACAGTAAACACATCGTTTGGATCATGCCCTCAATCAGAAACCATTATTTCATCATTAAAGATTGA
TGCCACCCTTACTAGAAAAAATCATTCTGAACATCCGCTCTGTTCTGAAGAAGCCCTGGATCCAGACATTGAATTGTCTCTAGTAAGTGA
AGAAGATAAACAGTCCACTTCAAATAGAGATTTTGAAACAGAAGCAGAAGATGAATCTATCTATTTTACACCTGAACTTTATGATCCTGA
AGATACAGATGAAGAAAAAAATGACCTAGCTGAAACTGATAGAGGAAATAGATTGGCTAACAATTCAGATTGCATTTTAGCTAAAGACCT
TTTTGAAATTAGAACTATAAAAGAAGTAGATTCAGCCAGAGAAGTGAAAGCTGAGGATTGCATAGATACAAAGTTGAATGGAATTCTGCA
TATTGAAGAAAGTAAAATTGATGACATTGATGGTAATGTAAAAACAACTTGGATAAATGAACTGGAACTGGGAAAAACTCATGAAATAGA
AATAAAGAACTTTAAACCATCTCCTTCCAAAAATAAAGGCATGTTTCCTGGTTTTAAGTAATAATACTTAACTCTCAAGCTAAGTAAAAA
TATGTCATCATGCTTATGTTAAACTCTGTTGTAAGTAATAATTTGTAAATTGAATAAGTGGCATACTTTTTAAAAAACTATTTTATGTTC
AGAAATGTAAATGTTATTATTCTTGAGTTTTTGGGTTTTTTTTTTTGAGACAGAGTCTTGGTCTGTTGCCCAGGCTGGAATGCAGTGGTG
TGCTCTGGGCTCACTGCAACCTTCACCTCCAGGTTCAAGTGATTCTCCTGCCTCAGCCTTCTGAGTAGCTGGGACTACAGGTGTGCACCA
CCATGCCCAGCTAGTTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGGCCTCGTGATCTGC
CCTTCTCTGCCTCCCTAAGTTGCTGGGATTACAGGTGTGAGCCACAGTGCCTGGCCCATTCTTGAGTTTTGATAAAGTAATTCATACAAA
GTACTGTCCTCAAATAAGTCTTCCTTAGCTAAATGCAATTTAAAATTATTCAAAGATCCTAGGGCACTTCTAGTTTCACGTAAATATTCA
TATTAGGTGGTTCTCTTCATCCATTTGTTTTCACACTGATACATAAAAATTAACAGCAGTCTAATCTAGTGACACCTCAGTCATATTTCG
CTATAGATTTTACCTCAAATCAGTCCAAGACTTTTTCAGAGATCACCATTTGTCTTGAAAGGTTTATTTCGTTATTAAACTGCCTACTTA
TAAGTAATTAAGAGAAATTAAGAAAGTAGTATGCATTTTTAATTGAAATTGTTTTACATTCTTTGTATAATAAACCTAAAACCAAACATG
TCATAAACAAATTGACGTAAAGATATAAAATGCCAAATGAAGTATTCCAAATTTTCTATTCTAATTATTTAGCTTCACCATCATTGTGGA
AAAAAATACTAGATCCTGCTTAGTATTATATATTTTTCCTAGTGGATCAGTGAGTAATAAGTACCAAACACTAGACTAGAAGGTAATTTC
TACATTGTTTAGAAAGGGTGAAACAATTTATCCCCTCTGGTATTGTTCTAGCATAAGCTTTAGTTATACAATGATTAAGATAGAAAACTT
CATATATAAATTTGATAAGCAAACCCACATTTATAGCTGCAGCTAAAATATGTTTCCTTAGGGCACAGTAATCCTTTCTGTGAATTTTGA
CCTTGTTTGTGTTTTTGTGAATGAAGCTATATGTCTAATCAAAAATGATTATAAAAGAGGCTCATCTCTGACATCATTCCAAAAATACAT
TCATTGATCTCTTTTTAAGAAACATCTGTTATTCACTGGGCATTGGGACTTTTTGTGAGTAATTTGAATTGAAATTTTATGAGCTATCCA
AGAATTCTGTATGGTCTATTATTTTCAAGTCAAAATTTCCAGTAAGGATTTACTTTACATTTCATTTGGATAAATGAATCATTATATAGG
TATGTCTTTGCTTCCATTTTGAGACATTTAGATTTTTACAGCCTGTTTCTATAGCATTTGATGTTACAACTCTAAGCGTAGTTCAAAGAC
ATTTAAATTGACAAGTTACCAGTTAAAGAATTTAGAATATATTAGATCCCATCTAGTATTATATATTTTTTCTAGTTGATCATTGAGCAG
TAAATACCAAATACTCGATTAGAAGGTAATTTTTACATTGTTTTGAAAGGGTGAAACAATTTATCTCCTCTGGTATTATTCTTAAACCAC
AGATAGGGATAGTAGGGTAGTGAAACGAATAAATACCTGGTAGAAGACAAGAGACTTGGGCTCTACACCTGGCTCTGCCACTGATTTGCT
AAGTCATATTGGCAATCACCACACCCTTCAGGGAATTAGTTTCATCTGTAAAATGCAGCGGTTAGTACTATAAAATCATACAAATTTCTT
TGTGCTTTGAGAATCTATAAAGGAATGTCTGTTGATATTCTGAGTCGATTTTCATTTGCTTTTGTTCCAGAACGGTTAAAATAAAGCATA

>In-frame_ENST00000583590_ENST00000259008_TCGA-A2-A25B-01A_DDX42_chr17_61884014_+_BRIP1_chr17_59886118_length(amino acids)=1322AA_start in transcript=412_stop in transcript=4380
MNWNKGGPGTKRGFGFGGFAISAGKKEEPKLPQQSHSAFGATSSSSGFGKSAPPQLPSFYKIGSKRANFDEENAYFEDEEEDSSNVDLPY
IPAENSPTRQQFHSKPVDSDSDDDPLEAFMAEVEDQAARDMKRLEEKDKERKNVKGIRDDIEEEDDQEAYFRYMAENPTAGVVQEEEEDN
LEYDSDGNPIAPTKKIIDPLPPIDHSEIDYPPFEKNFYNEHEEITNLTPQQLIDLRHKLNLRVSGAAPPRPGSSFAHFGFDEQLMHQIRK
SEYTQPTPIQCQPPGHCSRCCCSTKQGNSQESSNTIKKDHTGKSKIPKIYFGTRTHKQIAQITRELRRTAYSGVPMTILSSRDHTCVHPE
VVGNFNRNEKCMELLDGKNGKSCYFYHGVHKISDQHTLQTFQGMCKAWDIEELVSLGKKLKACPYYTARELIQDADIIFCPYNYLLDAQI
RESMDLNLKEQVVILDEAHNIEDCARESASYSVTEVQLRFARDELDSMVNNNIRKKDHEPLRAVCCSLINWLEANAEYLVERDYESACKI
WSGNEMLLTLHKMGITTATFPILQGHFSAVLQKEEKISPIYGKEEAREVPVISASTQIMLKGLFMVLDYLFRQNSRFADDYKIAIQQTYS
WTNQIDISDKNGLLVLPKNKKRSRQKTAVHVLNFWCLNPAVAFSDINGKVQTIVLTSGTLSPMKSFSSELGVTFTIQLEANHIIKNSQVW
VGTIGSGPKGRNLCATFQNTETFEFQDEVGALLLSVCQTVSQGILCFLPSYKLLEKLKERWLSTGLWHNLELVKTVIVEPQGGEKTNFDE
LLQVYYDAIKYKGEKDGALLVAVCRGKVSEGLDFSDDNARAVITIGIPFPNVKDLQVELKRQYNDHHSKLRGLLPGRQWYEIQAYRALNQ
ALGRCIRHRNDWGALILVDDRFRNNPSRYISGLSKWVRQQIQHHSTFESALESLAEFSKKHQKVLNVSIKDRTNIQDNESTLEVTSLKYS
TSPYLLEAASHLSPENFVEDEAKICVQELQCPKIITKNSPLPSSIISRKEKNDPVFLEEAGKAEKIVISRSTSPTFNKQTKRVSWSSFNS
LGQYFTGKIPKATPELGSSENSASSPPRFKTEKMESKTVLPFTDKCESSNLTVNTSFGSCPQSETIISSLKIDATLTRKNHSEHPLCSEE
ALDPDIELSLVSEEDKQSTSNRDFETEAEDESIYFTPELYDPEDTDEEKNDLAETDRGNRLANNSDCILAKDLFEIRTIKEVDSAREVKA

--------------------------------------------------------------
>In-frame_ENST00000583590_ENST00000577598_TCGA-A2-A25B-01A_DDX42_chr17_61884014_+_BRIP1_chr17_59886118_length(transcript)=4600nt_BP=1258nt
ATATGCAACAGTTTAAACTATAGGCATGTTCATGTAAATATGGTTTCTGTCCAACCCGTTTTCTCTTGGGATTTTTGGCTAGCCCCTTGA
CGCCACTTTTTCTTCATTCGCAGACCCACTTTCTAGATGGGTCATGAACACTGTCCACCCAACTGCAGTTTCCCGTCAGAGTATCTGAGG
AGCCTGTGAGGCGTTCTGGAGCTTTAAGCAACGGGCCGTGAGGCGGTGGCGGTGGTGGCGGTGGCGGCGGCGGTGGTGGTGGTGGCGGCG
GCGGCGGCGAAGGGGGCGGAGAGGAAGGAGCGCGGCGGGACCGGGCCGGGACAGCGCGTACTTTGGGCTCCGGGATTCGCTCCGCGCCCG
CGGTTGTAGCAGCTGCCGCTGCAGCCATAGCAGCAGGTCAGTCATTGGCACCATGAACTGGAATAAAGGTGGTCCTGGCACTAAGCGAGG
ATTTGGCTTTGGAGGTTTTGCCATCAGTGCTGGGAAAAAGGAGGAACCCAAACTCCCACAGCAGTCCCACAGTGCCTTTGGGGCAACCAG
CTCTTCTTCTGGATTTGGAAAGTCAGCTCCACCACAGCTTCCTTCTTTCTACAAAATTGGATCTAAGCGGGCCAACTTTGATGAAGAAAA
TGCCTATTTTGAAGATGAGGAAGAAGATTCTAGCAACGTTGATTTACCTTACATTCCTGCTGAAAACTCACCAACTCGCCAGCAATTCCA
TTCCAAGCCAGTAGATTCTGACAGCGATGATGATCCCTTGGAGGCATTCATGGCTGAAGTGGAGGATCAGGCAGCTAGAGACATGAAGAG
GCTTGAAGAAAAGGACAAGGAAAGAAAAAACGTAAAGGGTATTCGAGATGACATTGAAGAGGAAGATGACCAAGAAGCTTATTTTCGATA
CATGGCAGAAAACCCAACTGCTGGTGTGGTTCAGGAGGAAGAGGAAGACAATCTAGAATATGATAGTGACGGAAATCCAATTGCACCTAC
CAAAAAAATCATTGATCCTCTTCCCCCCATTGATCATTCAGAGATTGACTATCCACCATTTGAAAAAAACTTTTACAATGAGCATGAAGA
GATAACCAACCTCACTCCACAGCAGTTAATAGATCTCCGGCATAAGCTCAATCTTCGGGTCTCTGGTGCTGCACCTCCTAGACCAGGAAG
TAGCTTTGCTCATTTTGGGTTTGACGAACAACTTATGCACCAGATTCGGAAATCTGAATACACACAGCCCACTCCAATACAGTGCCAGCC
CCCTGGCCACTGTTCTAGGTGCTGTTGTTCTACTAAACAAGGAAACAGTCAAGAGTCATCGAATACCATTAAGAAGGATCATACAGGGAA
ATCCAAGATACCCAAAATATATTTTGGGACACGCACACACAAGCAGATTGCTCAGATTACTAGAGAGCTCCGGAGGACGGCATATTCAGG
GGTTCCAATGACTATTCTTTCCAGCAGGGATCATACTTGTGTCCATCCTGAGGTAGTCGGTAACTTCAACAGAAATGAGAAGTGCATGGA
ATTGCTAGATGGGAAAAACGGAAAATCCTGCTATTTTTATCATGGAGTTCATAAAATTAGTGATCAGCACACATTACAGACTTTCCAAGG
GATGTGCAAAGCCTGGGATATAGAAGAACTTGTCAGCCTGGGGAAGAAACTAAAGGCCTGTCCATATTACACAGCCCGAGAACTAATACA
AGATGCTGACATCATATTTTGTCCCTACAACTATCTTCTAGATGCACAAATAAGGGAAAGTATGGATTTAAATCTGAAAGAACAGGTTGT
CATTTTAGATGAAGCTCATAACATCGAGGACTGTGCTCGGGAATCAGCAAGTTACAGTGTAACAGAAGTTCAGCTTCGGTTTGCTCGGGA
TGAACTAGATAGTATGGTCAACAATAATATAAGGAAGAAAGATCATGAACCCCTACGAGCTGTGTGCTGTAGCCTCATTAATTGGTTAGA
AGCAAACGCTGAATATCTTGTAGAAAGAGATTATGAATCAGCTTGTAAAATATGGAGTGGAAATGAAATGCTCTTAACTTTACACAAAAT
GGGTATCACCACTGCTACTTTTCCCATTTTGCAGGGACATTTTTCTGCTGTTCTTCAAAAAGAGGAAAAAATCTCACCAATTTATGGTAA
AGAGGAGGCAAGAGAAGTACCTGTTATTAGTGCATCAACTCAAATAATGCTTAAAGGACTTTTTATGGTACTTGACTATCTTTTTAGGCA
AAATAGCAGATTTGCAGATGATTATAAAATTGCGATTCAACAGACTTACTCCTGGACAAATCAGATTGATATTTCAGACAAAAATGGGTT
GTTGGTTCTACCAAAAAATAAGAAACGTTCACGACAGAAAACTGCAGTTCATGTGCTAAACTTTTGGTGCTTAAATCCAGCTGTGGCCTT
TTCAGATATTAATGGCAAAGTTCAGACCATTGTTTTGACATCTGGTACATTATCACCAATGAAATCCTTTTCGTCAGAACTTGGTGTTAC
ATTTACTATCCAGCTGGAGGCTAATCATATCATTAAAAATTCACAGGTTTGGGTTGGTACCATTGGGTCAGGCCCCAAGGGTCGGAATCT
CTGTGCTACCTTCCAGAATACTGAAACATTTGAGTTCCAAGATGAAGTGGGAGCACTTTTGTTATCTGTGTGCCAGACTGTGAGCCAAGG
AATTTTGTGTTTCTTGCCATCTTACAAGTTATTAGAAAAATTAAAAGAACGTTGGCTCTCTACTGGTTTATGGCATAATCTGGAGTTGGT
GAAGACAGTCATTGTAGAACCACAGGGAGGAGAAAAAACAAATTTTGATGAATTACTGCAGGTGTACTATGACGCAATCAAATACAAAGG
AGAGAAAGATGGAGCTCTCCTGGTAGCAGTTTGTCGTGGTAAAGTGAGTGAGGGTCTGGATTTCTCAGATGACAATGCCCGTGCTGTCAT
AACAATAGGAATTCCTTTTCCAAATGTGAAAGATCTACAGGTTGAACTAAAACGACAATACAATGACCACCATTCAAAATTGAGAGGTCT
TCTACCTGGCCGTCAGTGGTATGAAATTCAAGCATACAGGGCCTTAAACCAGGCCCTTGGTAGATGTATTAGACACAGAAATGATTGGGG
AGCTCTTATTCTAGTGGATGATCGCTTTAGGAATAACCCAAGTCGCTATATATCTGGACTTTCTAAATGGGTACGGCAGCAGATTCAGCA
CCATTCAACCTTTGAAAGTGCACTGGAATCCTTGGCTGAATTTTCCAAAAAGCATCAAAAAGTTCTTAATGTATCCATAAAGGACAGAAC
CAATATACAGGACAATGAGTCTACACTTGAAGTGACCTCTTTAAAGTACAGTACCTCACCTTATTTACTGGAAGCAGCAAGTCATCTATC
ACCAGAAAATTTTGTGGAAGATGAAGCAAAGATATGTGTCCAGGAACTACAGTGTCCTAAAATTATTACCAAAAATTCACCTCTACCAAG
TAGCATTATCTCCAGAAAGGAGAAAAGTATGAAAAGTTCTTCCCATTTACCTTTGATAGAGAAGTCTTTCATTATATTTAGTGAAATGAT
ATTTATTTGGGTATAGATTAATTCCTTAAATATGGTGGTTTGTAATATAAGGTGTTATCATAAAATAGTGAAACAGTATGGTGTACTGTA
ATGGGAACAAACTTTTGTCAGGAGACCAGAGCATATTTTCTGGTTTTCCACTAACTGGCTTTGCCACTTACTAGCTTTGTGATCATGAGC
AAGTCATTTGTCCTTTTTGAGTCGTAATAGGAAAAAAAAAATGCCTGCCTAGCTATCCCTTCAGGTTGGGTTGTAAAGGTCAAAATTATA
AATATCACAGCATTGTAAAGTACCATGTAAGTGGTAGATGTTATTCTAAAGGCTATATAAAAATTTGGCCTAATTTTTATGTAGATACTT
CTATATGAACTACTTTTCCTATATAGATAGTTCTTATGAACTTATTTTTAGGAGGTGAGAGACATTTATTTTAAGTGATGAAAAATAATA
TTTTAAAATATTTTGAAATAATCATCTGTATCAGATTGGCAAACTGTGGCCCATGGGCCAAATTTGGCCTGCTGCCTGTTTTTGTAAATA
AAGTTTAATGAAATGTAGTCATGCCCATTTATTTACATTTTAGAAACAACAGCAGAGTTGAGTATTTGTGTGTATTGCACTAGAACAGCA
TAATTGAGTAGTCGCAACAGATACATTATGCTCCACAAAGCCTAAATATTACTATCTGGCCTATGACAGAAAAGGTTTGCCAAACTCTGG
TCTATTCCATTGGATATAATTTCAGTTGTTTTAATTCATATATCCAAGGCGGGTGGATCATCCGAGGTCAGGAGTCCGAGACCAGCCTGA
CCAGTGTGGTGAAACACCGTCTCTACTAAAAAAATACAAAAATTAGCTGGGTGTGGAGGCAGCTGTCTGTAATCCCAGCTACTCAGGAGG
CTGAGGCAGGAGAATTGCTTGAACTGGGAGGTGGAGGTTGCAGTGAGCCAGGATTGCGCCATTGCACTCCAGCCTGGGCAACAAAAGCAA

>In-frame_ENST00000583590_ENST00000577598_TCGA-A2-A25B-01A_DDX42_chr17_61884014_+_BRIP1_chr17_59886118_length(amino acids)=1067AA_start in transcript=412_stop in transcript=3615
MNWNKGGPGTKRGFGFGGFAISAGKKEEPKLPQQSHSAFGATSSSSGFGKSAPPQLPSFYKIGSKRANFDEENAYFEDEEEDSSNVDLPY
IPAENSPTRQQFHSKPVDSDSDDDPLEAFMAEVEDQAARDMKRLEEKDKERKNVKGIRDDIEEEDDQEAYFRYMAENPTAGVVQEEEEDN
LEYDSDGNPIAPTKKIIDPLPPIDHSEIDYPPFEKNFYNEHEEITNLTPQQLIDLRHKLNLRVSGAAPPRPGSSFAHFGFDEQLMHQIRK
SEYTQPTPIQCQPPGHCSRCCCSTKQGNSQESSNTIKKDHTGKSKIPKIYFGTRTHKQIAQITRELRRTAYSGVPMTILSSRDHTCVHPE
VVGNFNRNEKCMELLDGKNGKSCYFYHGVHKISDQHTLQTFQGMCKAWDIEELVSLGKKLKACPYYTARELIQDADIIFCPYNYLLDAQI
RESMDLNLKEQVVILDEAHNIEDCARESASYSVTEVQLRFARDELDSMVNNNIRKKDHEPLRAVCCSLINWLEANAEYLVERDYESACKI
WSGNEMLLTLHKMGITTATFPILQGHFSAVLQKEEKISPIYGKEEAREVPVISASTQIMLKGLFMVLDYLFRQNSRFADDYKIAIQQTYS
WTNQIDISDKNGLLVLPKNKKRSRQKTAVHVLNFWCLNPAVAFSDINGKVQTIVLTSGTLSPMKSFSSELGVTFTIQLEANHIIKNSQVW
VGTIGSGPKGRNLCATFQNTETFEFQDEVGALLLSVCQTVSQGILCFLPSYKLLEKLKERWLSTGLWHNLELVKTVIVEPQGGEKTNFDE
LLQVYYDAIKYKGEKDGALLVAVCRGKVSEGLDFSDDNARAVITIGIPFPNVKDLQVELKRQYNDHHSKLRGLLPGRQWYEIQAYRALNQ
ALGRCIRHRNDWGALILVDDRFRNNPSRYISGLSKWVRQQIQHHSTFESALESLAEFSKKHQKVLNVSIKDRTNIQDNESTLEVTSLKYS

--------------------------------------------------------------
>In-frame_ENST00000359353_ENST00000259008_TCGA-A2-A25B-01A_DDX42_chr17_61884014_+_BRIP1_chr17_59886118_length(transcript)=5965nt_BP=812nt
AACGGGCCGTGAGGCGGTGGCGGTGGTGGCGGTGGCGGCGGCGGTGGTGGTGGTGGCGGCGGCGGCGGCGAAGGGGGCGGAGAGGAAGGA
GCGCGGCGGGACCGGGCCGGGACAGCGCGTACTTTGGGCTCCGGGATTCGCTCCGCGCCCGCGGTTGTAGCAGCTGCCGCTGCAGCCATA
GCAGCAGCTATTTTGAAGATGAGGAAGAAGATTCTAGCAACGTTGATTTACCTTACATTCCTGCTGAAAACTCACCAACTCGCCAGCAAT
TCCATTCCAAGCCAGTAGATTCTGACAGCGATGATGATCCCTTGGAGGCATTCATGGCTGAAGTGGAGGATCAGGCAGCTAGAGACATGA
AGAGGCTTGAAGAAAAGGACAAGGAAAGAAAAAACGTAAAGGGTATTCGAGATGACATTGAAGAGGAAGATGACCAAGAAGCTTATTTTC
GATACATGGCAGAAAACCCAACTGCTGGTGTGGTTCAGGAGGAAGAGGAAGACAATCTAGAATATGATAGTGACGGAAATCCAATTGCAC
CTACCAAAAAAATCATTGATCCTCTTCCCCCCATTGATCATTCAGAGATTGACTATCCACCATTTGAAAAAAACTTTTACAATGAGCATG
AAGAGATAACCAACCTCACTCCACAGCAGTTAATAGATCTCCGGCATAAGCTCAATCTTCGGGTCTCTGGTGCTGCACCTCCTAGACCAG
GAAGTAGCTTTGCTCATTTTGGGTTTGACGAACAACTTATGCACCAGATTCGGAAATCTGAATACACACAGCCCACTCCAATACAGTGCC
AGCCCCCTGGCCACTGTTCTAGGTGCTGTTGTTCTACTAAACAAGGAAACAGTCAAGAGTCATCGAATACCATTAAGAAGGATCATACAG
GGAAATCCAAGATACCCAAAATATATTTTGGGACACGCACACACAAGCAGATTGCTCAGATTACTAGAGAGCTCCGGAGGACGGCATATT
CAGGGGTTCCAATGACTATTCTTTCCAGCAGGGATCATACTTGTGTCCATCCTGAGGTAGTCGGTAACTTCAACAGAAATGAGAAGTGCA
TGGAATTGCTAGATGGGAAAAACGGAAAATCCTGCTATTTTTATCATGGAGTTCATAAAATTAGTGATCAGCACACATTACAGACTTTCC
AAGGGATGTGCAAAGCCTGGGATATAGAAGAACTTGTCAGCCTGGGGAAGAAACTAAAGGCCTGTCCATATTACACAGCCCGAGAACTAA
TACAAGATGCTGACATCATATTTTGTCCCTACAACTATCTTCTAGATGCACAAATAAGGGAAAGTATGGATTTAAATCTGAAAGAACAGG
TTGTCATTTTAGATGAAGCTCATAACATCGAGGACTGTGCTCGGGAATCAGCAAGTTACAGTGTAACAGAAGTTCAGCTTCGGTTTGCTC
GGGATGAACTAGATAGTATGGTCAACAATAATATAAGGAAGAAAGATCATGAACCCCTACGAGCTGTGTGCTGTAGCCTCATTAATTGGT
TAGAAGCAAACGCTGAATATCTTGTAGAAAGAGATTATGAATCAGCTTGTAAAATATGGAGTGGAAATGAAATGCTCTTAACTTTACACA
AAATGGGTATCACCACTGCTACTTTTCCCATTTTGCAGGGACATTTTTCTGCTGTTCTTCAAAAAGAGGAAAAAATCTCACCAATTTATG
GTAAAGAGGAGGCAAGAGAAGTACCTGTTATTAGTGCATCAACTCAAATAATGCTTAAAGGACTTTTTATGGTACTTGACTATCTTTTTA
GGCAAAATAGCAGATTTGCAGATGATTATAAAATTGCGATTCAACAGACTTACTCCTGGACAAATCAGATTGATATTTCAGACAAAAATG
GGTTGTTGGTTCTACCAAAAAATAAGAAACGTTCACGACAGAAAACTGCAGTTCATGTGCTAAACTTTTGGTGCTTAAATCCAGCTGTGG
CCTTTTCAGATATTAATGGCAAAGTTCAGACCATTGTTTTGACATCTGGTACATTATCACCAATGAAATCCTTTTCGTCAGAACTTGGTG
TTACATTTACTATCCAGCTGGAGGCTAATCATATCATTAAAAATTCACAGGTTTGGGTTGGTACCATTGGGTCAGGCCCCAAGGGTCGGA
ATCTCTGTGCTACCTTCCAGAATACTGAAACATTTGAGTTCCAAGATGAAGTGGGAGCACTTTTGTTATCTGTGTGCCAGACTGTGAGCC
AAGGAATTTTGTGTTTCTTGCCATCTTACAAGTTATTAGAAAAATTAAAAGAACGTTGGCTCTCTACTGGTTTATGGCATAATCTGGAGT
TGGTGAAGACAGTCATTGTAGAACCACAGGGAGGAGAAAAAACAAATTTTGATGAATTACTGCAGGTGTACTATGACGCAATCAAATACA
AAGGAGAGAAAGATGGAGCTCTCCTGGTAGCAGTTTGTCGTGGTAAAGTGAGTGAGGGTCTGGATTTCTCAGATGACAATGCCCGTGCTG
TCATAACAATAGGAATTCCTTTTCCAAATGTGAAAGATCTACAGGTTGAACTAAAACGACAATACAATGACCACCATTCAAAATTGAGAG
GTCTTCTACCTGGCCGTCAGTGGTATGAAATTCAAGCATACAGGGCCTTAAACCAGGCCCTTGGTAGATGTATTAGACACAGAAATGATT
GGGGAGCTCTTATTCTAGTGGATGATCGCTTTAGGAATAACCCAAGTCGCTATATATCTGGACTTTCTAAATGGGTACGGCAGCAGATTC
AGCACCATTCAACCTTTGAAAGTGCACTGGAATCCTTGGCTGAATTTTCCAAAAAGCATCAAAAAGTTCTTAATGTATCCATAAAGGACA
GAACCAATATACAGGACAATGAGTCTACACTTGAAGTGACCTCTTTAAAGTACAGTACCTCACCTTATTTACTGGAAGCAGCAAGTCATC
TATCACCAGAAAATTTTGTGGAAGATGAAGCAAAGATATGTGTCCAGGAACTACAGTGTCCTAAAATTATTACCAAAAATTCACCTCTAC
CAAGTAGCATTATCTCCAGAAAGGAGAAAAATGATCCAGTATTCCTGGAAGAAGCAGGGAAAGCAGAAAAAATTGTGATTTCCAGATCCA
CAAGCCCAACTTTCAACAAACAAACAAAGAGAGTTAGCTGGTCAAGCTTTAATTCTTTGGGACAGTATTTTACTGGTAAAATACCGAAGG
CAACACCTGAGCTCGGGTCATCAGAGAATAGTGCCTCTAGTCCTCCCCGTTTCAAAACAGAGAAGATGGAAAGTAAAACTGTTTTGCCCT
TCACTGATAAATGTGAATCCTCAAATCTGACAGTAAACACATCGTTTGGATCATGCCCTCAATCAGAAACCATTATTTCATCATTAAAGA
TTGATGCCACCCTTACTAGAAAAAATCATTCTGAACATCCGCTCTGTTCTGAAGAAGCCCTGGATCCAGACATTGAATTGTCTCTAGTAA
GTGAAGAAGATAAACAGTCCACTTCAAATAGAGATTTTGAAACAGAAGCAGAAGATGAATCTATCTATTTTACACCTGAACTTTATGATC
CTGAAGATACAGATGAAGAAAAAAATGACCTAGCTGAAACTGATAGAGGAAATAGATTGGCTAACAATTCAGATTGCATTTTAGCTAAAG
ACCTTTTTGAAATTAGAACTATAAAAGAAGTAGATTCAGCCAGAGAAGTGAAAGCTGAGGATTGCATAGATACAAAGTTGAATGGAATTC
TGCATATTGAAGAAAGTAAAATTGATGACATTGATGGTAATGTAAAAACAACTTGGATAAATGAACTGGAACTGGGAAAAACTCATGAAA
TAGAAATAAAGAACTTTAAACCATCTCCTTCCAAAAATAAAGGCATGTTTCCTGGTTTTAAGTAATAATACTTAACTCTCAAGCTAAGTA
AAAATATGTCATCATGCTTATGTTAAACTCTGTTGTAAGTAATAATTTGTAAATTGAATAAGTGGCATACTTTTTAAAAAACTATTTTAT
GTTCAGAAATGTAAATGTTATTATTCTTGAGTTTTTGGGTTTTTTTTTTTGAGACAGAGTCTTGGTCTGTTGCCCAGGCTGGAATGCAGT
GGTGTGCTCTGGGCTCACTGCAACCTTCACCTCCAGGTTCAAGTGATTCTCCTGCCTCAGCCTTCTGAGTAGCTGGGACTACAGGTGTGC
ACCACCATGCCCAGCTAGTTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGGCCTCGTGAT
CTGCCCTTCTCTGCCTCCCTAAGTTGCTGGGATTACAGGTGTGAGCCACAGTGCCTGGCCCATTCTTGAGTTTTGATAAAGTAATTCATA
CAAAGTACTGTCCTCAAATAAGTCTTCCTTAGCTAAATGCAATTTAAAATTATTCAAAGATCCTAGGGCACTTCTAGTTTCACGTAAATA
TTCATATTAGGTGGTTCTCTTCATCCATTTGTTTTCACACTGATACATAAAAATTAACAGCAGTCTAATCTAGTGACACCTCAGTCATAT
TTCGCTATAGATTTTACCTCAAATCAGTCCAAGACTTTTTCAGAGATCACCATTTGTCTTGAAAGGTTTATTTCGTTATTAAACTGCCTA
CTTATAAGTAATTAAGAGAAATTAAGAAAGTAGTATGCATTTTTAATTGAAATTGTTTTACATTCTTTGTATAATAAACCTAAAACCAAA
CATGTCATAAACAAATTGACGTAAAGATATAAAATGCCAAATGAAGTATTCCAAATTTTCTATTCTAATTATTTAGCTTCACCATCATTG
TGGAAAAAAATACTAGATCCTGCTTAGTATTATATATTTTTCCTAGTGGATCAGTGAGTAATAAGTACCAAACACTAGACTAGAAGGTAA
TTTCTACATTGTTTAGAAAGGGTGAAACAATTTATCCCCTCTGGTATTGTTCTAGCATAAGCTTTAGTTATACAATGATTAAGATAGAAA
ACTTCATATATAAATTTGATAAGCAAACCCACATTTATAGCTGCAGCTAAAATATGTTTCCTTAGGGCACAGTAATCCTTTCTGTGAATT
TTGACCTTGTTTGTGTTTTTGTGAATGAAGCTATATGTCTAATCAAAAATGATTATAAAAGAGGCTCATCTCTGACATCATTCCAAAAAT
ACATTCATTGATCTCTTTTTAAGAAACATCTGTTATTCACTGGGCATTGGGACTTTTTGTGAGTAATTTGAATTGAAATTTTATGAGCTA
TCCAAGAATTCTGTATGGTCTATTATTTTCAAGTCAAAATTTCCAGTAAGGATTTACTTTACATTTCATTTGGATAAATGAATCATTATA
TAGGTATGTCTTTGCTTCCATTTTGAGACATTTAGATTTTTACAGCCTGTTTCTATAGCATTTGATGTTACAACTCTAAGCGTAGTTCAA
AGACATTTAAATTGACAAGTTACCAGTTAAAGAATTTAGAATATATTAGATCCCATCTAGTATTATATATTTTTTCTAGTTGATCATTGA
GCAGTAAATACCAAATACTCGATTAGAAGGTAATTTTTACATTGTTTTGAAAGGGTGAAACAATTTATCTCCTCTGGTATTATTCTTAAA
CCACAGATAGGGATAGTAGGGTAGTGAAACGAATAAATACCTGGTAGAAGACAAGAGACTTGGGCTCTACACCTGGCTCTGCCACTGATT
TGCTAAGTCATATTGGCAATCACCACACCCTTCAGGGAATTAGTTTCATCTGTAAAATGCAGCGGTTAGTACTATAAAATCATACAAATT
TCTTTGTGCTTTGAGAATCTATAAAGGAATGTCTGTTGATATTCTGAGTCGATTTTCATTTGCTTTTGTTCCAGAACGGTTAAAATAAAG

>In-frame_ENST00000359353_ENST00000259008_TCGA-A2-A25B-01A_DDX42_chr17_61884014_+_BRIP1_chr17_59886118_length(amino acids)=1207AA_start in transcript=311_stop in transcript=3934
MEAFMAEVEDQAARDMKRLEEKDKERKNVKGIRDDIEEEDDQEAYFRYMAENPTAGVVQEEEEDNLEYDSDGNPIAPTKKIIDPLPPIDH
SEIDYPPFEKNFYNEHEEITNLTPQQLIDLRHKLNLRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQCQPPGHCSRCCCSTK
QGNSQESSNTIKKDHTGKSKIPKIYFGTRTHKQIAQITRELRRTAYSGVPMTILSSRDHTCVHPEVVGNFNRNEKCMELLDGKNGKSCYF
YHGVHKISDQHTLQTFQGMCKAWDIEELVSLGKKLKACPYYTARELIQDADIIFCPYNYLLDAQIRESMDLNLKEQVVILDEAHNIEDCA
RESASYSVTEVQLRFARDELDSMVNNNIRKKDHEPLRAVCCSLINWLEANAEYLVERDYESACKIWSGNEMLLTLHKMGITTATFPILQG
HFSAVLQKEEKISPIYGKEEAREVPVISASTQIMLKGLFMVLDYLFRQNSRFADDYKIAIQQTYSWTNQIDISDKNGLLVLPKNKKRSRQ
KTAVHVLNFWCLNPAVAFSDINGKVQTIVLTSGTLSPMKSFSSELGVTFTIQLEANHIIKNSQVWVGTIGSGPKGRNLCATFQNTETFEF
QDEVGALLLSVCQTVSQGILCFLPSYKLLEKLKERWLSTGLWHNLELVKTVIVEPQGGEKTNFDELLQVYYDAIKYKGEKDGALLVAVCR
GKVSEGLDFSDDNARAVITIGIPFPNVKDLQVELKRQYNDHHSKLRGLLPGRQWYEIQAYRALNQALGRCIRHRNDWGALILVDDRFRNN
PSRYISGLSKWVRQQIQHHSTFESALESLAEFSKKHQKVLNVSIKDRTNIQDNESTLEVTSLKYSTSPYLLEAASHLSPENFVEDEAKIC
VQELQCPKIITKNSPLPSSIISRKEKNDPVFLEEAGKAEKIVISRSTSPTFNKQTKRVSWSSFNSLGQYFTGKIPKATPELGSSENSASS
PPRFKTEKMESKTVLPFTDKCESSNLTVNTSFGSCPQSETIISSLKIDATLTRKNHSEHPLCSEEALDPDIELSLVSEEDKQSTSNRDFE
TEAEDESIYFTPELYDPEDTDEEKNDLAETDRGNRLANNSDCILAKDLFEIRTIKEVDSAREVKAEDCIDTKLNGILHIEESKIDDIDGN

--------------------------------------------------------------
>In-frame_ENST00000359353_ENST00000577598_TCGA-A2-A25B-01A_DDX42_chr17_61884014_+_BRIP1_chr17_59886118_length(transcript)=4154nt_BP=812nt
AACGGGCCGTGAGGCGGTGGCGGTGGTGGCGGTGGCGGCGGCGGTGGTGGTGGTGGCGGCGGCGGCGGCGAAGGGGGCGGAGAGGAAGGA
GCGCGGCGGGACCGGGCCGGGACAGCGCGTACTTTGGGCTCCGGGATTCGCTCCGCGCCCGCGGTTGTAGCAGCTGCCGCTGCAGCCATA
GCAGCAGCTATTTTGAAGATGAGGAAGAAGATTCTAGCAACGTTGATTTACCTTACATTCCTGCTGAAAACTCACCAACTCGCCAGCAAT
TCCATTCCAAGCCAGTAGATTCTGACAGCGATGATGATCCCTTGGAGGCATTCATGGCTGAAGTGGAGGATCAGGCAGCTAGAGACATGA
AGAGGCTTGAAGAAAAGGACAAGGAAAGAAAAAACGTAAAGGGTATTCGAGATGACATTGAAGAGGAAGATGACCAAGAAGCTTATTTTC
GATACATGGCAGAAAACCCAACTGCTGGTGTGGTTCAGGAGGAAGAGGAAGACAATCTAGAATATGATAGTGACGGAAATCCAATTGCAC
CTACCAAAAAAATCATTGATCCTCTTCCCCCCATTGATCATTCAGAGATTGACTATCCACCATTTGAAAAAAACTTTTACAATGAGCATG
AAGAGATAACCAACCTCACTCCACAGCAGTTAATAGATCTCCGGCATAAGCTCAATCTTCGGGTCTCTGGTGCTGCACCTCCTAGACCAG
GAAGTAGCTTTGCTCATTTTGGGTTTGACGAACAACTTATGCACCAGATTCGGAAATCTGAATACACACAGCCCACTCCAATACAGTGCC
AGCCCCCTGGCCACTGTTCTAGGTGCTGTTGTTCTACTAAACAAGGAAACAGTCAAGAGTCATCGAATACCATTAAGAAGGATCATACAG
GGAAATCCAAGATACCCAAAATATATTTTGGGACACGCACACACAAGCAGATTGCTCAGATTACTAGAGAGCTCCGGAGGACGGCATATT
CAGGGGTTCCAATGACTATTCTTTCCAGCAGGGATCATACTTGTGTCCATCCTGAGGTAGTCGGTAACTTCAACAGAAATGAGAAGTGCA
TGGAATTGCTAGATGGGAAAAACGGAAAATCCTGCTATTTTTATCATGGAGTTCATAAAATTAGTGATCAGCACACATTACAGACTTTCC
AAGGGATGTGCAAAGCCTGGGATATAGAAGAACTTGTCAGCCTGGGGAAGAAACTAAAGGCCTGTCCATATTACACAGCCCGAGAACTAA
TACAAGATGCTGACATCATATTTTGTCCCTACAACTATCTTCTAGATGCACAAATAAGGGAAAGTATGGATTTAAATCTGAAAGAACAGG
TTGTCATTTTAGATGAAGCTCATAACATCGAGGACTGTGCTCGGGAATCAGCAAGTTACAGTGTAACAGAAGTTCAGCTTCGGTTTGCTC
GGGATGAACTAGATAGTATGGTCAACAATAATATAAGGAAGAAAGATCATGAACCCCTACGAGCTGTGTGCTGTAGCCTCATTAATTGGT
TAGAAGCAAACGCTGAATATCTTGTAGAAAGAGATTATGAATCAGCTTGTAAAATATGGAGTGGAAATGAAATGCTCTTAACTTTACACA
AAATGGGTATCACCACTGCTACTTTTCCCATTTTGCAGGGACATTTTTCTGCTGTTCTTCAAAAAGAGGAAAAAATCTCACCAATTTATG
GTAAAGAGGAGGCAAGAGAAGTACCTGTTATTAGTGCATCAACTCAAATAATGCTTAAAGGACTTTTTATGGTACTTGACTATCTTTTTA
GGCAAAATAGCAGATTTGCAGATGATTATAAAATTGCGATTCAACAGACTTACTCCTGGACAAATCAGATTGATATTTCAGACAAAAATG
GGTTGTTGGTTCTACCAAAAAATAAGAAACGTTCACGACAGAAAACTGCAGTTCATGTGCTAAACTTTTGGTGCTTAAATCCAGCTGTGG
CCTTTTCAGATATTAATGGCAAAGTTCAGACCATTGTTTTGACATCTGGTACATTATCACCAATGAAATCCTTTTCGTCAGAACTTGGTG
TTACATTTACTATCCAGCTGGAGGCTAATCATATCATTAAAAATTCACAGGTTTGGGTTGGTACCATTGGGTCAGGCCCCAAGGGTCGGA
ATCTCTGTGCTACCTTCCAGAATACTGAAACATTTGAGTTCCAAGATGAAGTGGGAGCACTTTTGTTATCTGTGTGCCAGACTGTGAGCC
AAGGAATTTTGTGTTTCTTGCCATCTTACAAGTTATTAGAAAAATTAAAAGAACGTTGGCTCTCTACTGGTTTATGGCATAATCTGGAGT
TGGTGAAGACAGTCATTGTAGAACCACAGGGAGGAGAAAAAACAAATTTTGATGAATTACTGCAGGTGTACTATGACGCAATCAAATACA
AAGGAGAGAAAGATGGAGCTCTCCTGGTAGCAGTTTGTCGTGGTAAAGTGAGTGAGGGTCTGGATTTCTCAGATGACAATGCCCGTGCTG
TCATAACAATAGGAATTCCTTTTCCAAATGTGAAAGATCTACAGGTTGAACTAAAACGACAATACAATGACCACCATTCAAAATTGAGAG
GTCTTCTACCTGGCCGTCAGTGGTATGAAATTCAAGCATACAGGGCCTTAAACCAGGCCCTTGGTAGATGTATTAGACACAGAAATGATT
GGGGAGCTCTTATTCTAGTGGATGATCGCTTTAGGAATAACCCAAGTCGCTATATATCTGGACTTTCTAAATGGGTACGGCAGCAGATTC
AGCACCATTCAACCTTTGAAAGTGCACTGGAATCCTTGGCTGAATTTTCCAAAAAGCATCAAAAAGTTCTTAATGTATCCATAAAGGACA
GAACCAATATACAGGACAATGAGTCTACACTTGAAGTGACCTCTTTAAAGTACAGTACCTCACCTTATTTACTGGAAGCAGCAAGTCATC
TATCACCAGAAAATTTTGTGGAAGATGAAGCAAAGATATGTGTCCAGGAACTACAGTGTCCTAAAATTATTACCAAAAATTCACCTCTAC
CAAGTAGCATTATCTCCAGAAAGGAGAAAAGTATGAAAAGTTCTTCCCATTTACCTTTGATAGAGAAGTCTTTCATTATATTTAGTGAAA
TGATATTTATTTGGGTATAGATTAATTCCTTAAATATGGTGGTTTGTAATATAAGGTGTTATCATAAAATAGTGAAACAGTATGGTGTAC
TGTAATGGGAACAAACTTTTGTCAGGAGACCAGAGCATATTTTCTGGTTTTCCACTAACTGGCTTTGCCACTTACTAGCTTTGTGATCAT
GAGCAAGTCATTTGTCCTTTTTGAGTCGTAATAGGAAAAAAAAAATGCCTGCCTAGCTATCCCTTCAGGTTGGGTTGTAAAGGTCAAAAT
TATAAATATCACAGCATTGTAAAGTACCATGTAAGTGGTAGATGTTATTCTAAAGGCTATATAAAAATTTGGCCTAATTTTTATGTAGAT
ACTTCTATATGAACTACTTTTCCTATATAGATAGTTCTTATGAACTTATTTTTAGGAGGTGAGAGACATTTATTTTAAGTGATGAAAAAT
AATATTTTAAAATATTTTGAAATAATCATCTGTATCAGATTGGCAAACTGTGGCCCATGGGCCAAATTTGGCCTGCTGCCTGTTTTTGTA
AATAAAGTTTAATGAAATGTAGTCATGCCCATTTATTTACATTTTAGAAACAACAGCAGAGTTGAGTATTTGTGTGTATTGCACTAGAAC
AGCATAATTGAGTAGTCGCAACAGATACATTATGCTCCACAAAGCCTAAATATTACTATCTGGCCTATGACAGAAAAGGTTTGCCAAACT
CTGGTCTATTCCATTGGATATAATTTCAGTTGTTTTAATTCATATATCCAAGGCGGGTGGATCATCCGAGGTCAGGAGTCCGAGACCAGC
CTGACCAGTGTGGTGAAACACCGTCTCTACTAAAAAAATACAAAAATTAGCTGGGTGTGGAGGCAGCTGTCTGTAATCCCAGCTACTCAG
GAGGCTGAGGCAGGAGAATTGCTTGAACTGGGAGGTGGAGGTTGCAGTGAGCCAGGATTGCGCCATTGCACTCCAGCCTGGGCAACAAAA

>In-frame_ENST00000359353_ENST00000577598_TCGA-A2-A25B-01A_DDX42_chr17_61884014_+_BRIP1_chr17_59886118_length(amino acids)=952AA_start in transcript=311_stop in transcript=3169
MEAFMAEVEDQAARDMKRLEEKDKERKNVKGIRDDIEEEDDQEAYFRYMAENPTAGVVQEEEEDNLEYDSDGNPIAPTKKIIDPLPPIDH
SEIDYPPFEKNFYNEHEEITNLTPQQLIDLRHKLNLRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQCQPPGHCSRCCCSTK
QGNSQESSNTIKKDHTGKSKIPKIYFGTRTHKQIAQITRELRRTAYSGVPMTILSSRDHTCVHPEVVGNFNRNEKCMELLDGKNGKSCYF
YHGVHKISDQHTLQTFQGMCKAWDIEELVSLGKKLKACPYYTARELIQDADIIFCPYNYLLDAQIRESMDLNLKEQVVILDEAHNIEDCA
RESASYSVTEVQLRFARDELDSMVNNNIRKKDHEPLRAVCCSLINWLEANAEYLVERDYESACKIWSGNEMLLTLHKMGITTATFPILQG
HFSAVLQKEEKISPIYGKEEAREVPVISASTQIMLKGLFMVLDYLFRQNSRFADDYKIAIQQTYSWTNQIDISDKNGLLVLPKNKKRSRQ
KTAVHVLNFWCLNPAVAFSDINGKVQTIVLTSGTLSPMKSFSSELGVTFTIQLEANHIIKNSQVWVGTIGSGPKGRNLCATFQNTETFEF
QDEVGALLLSVCQTVSQGILCFLPSYKLLEKLKERWLSTGLWHNLELVKTVIVEPQGGEKTNFDELLQVYYDAIKYKGEKDGALLVAVCR
GKVSEGLDFSDDNARAVITIGIPFPNVKDLQVELKRQYNDHHSKLRGLLPGRQWYEIQAYRALNQALGRCIRHRNDWGALILVDDRFRNN
PSRYISGLSKWVRQQIQHHSTFESALESLAEFSKKHQKVLNVSIKDRTNIQDNESTLEVTSLKYSTSPYLLEAASHLSPENFVEDEAKIC

--------------------------------------------------------------
>In-frame_ENST00000389924_ENST00000259008_TCGA-A2-A25B-01A_DDX42_chr17_61884014_+_BRIP1_chr17_59886118_length(transcript)=6185nt_BP=1032nt
TGGCGGTGGTGGCGGTGGCGGCGGCGGTGGTGGTGGTGGCGGCGGCGGCGGCGAAGGGGGCGGAGAGGAAGGAGCGCGGCGGGACCGGGC
CGGGACAGCGCGTACTTTGGGCTCCGGGATTCGCTCCGCGCCCGCGGTTGTAGCAGCTGCCGCTGCAGCCATAGCAGCAGGTCAGTCATT
GGCACCATGAACTGGAATAAAGGTGGTCCTGGCACTAAGCGAGGATTTGGCTTTGGAGGTTTTGCCATCAGTGCTGGGAAAAAGGAGGAA
CCCAAACTCCCACAGCAGTCCCACAGTGCCTTTGGGGCAACCAGCTCTTCTTCTGGATTTGGAAAGTCAGCTCCACCACAGCTTCCTTCT
TTCTACAAAATTGGATCTAAGCGGGCCAACTTTGATGAAGAAAATGCCTATTTTGAAGATGAGGAAGAAGATTCTAGCAACGTTGATTTA
CCTTACATTCCTGCTGAAAACTCACCAACTCGCCAGCAATTCCATTCCAAGCCAGTAGATTCTGACAGCGATGATGATCCCTTGGAGGCA
TTCATGGCTGAAGTGGAGGATCAGGCAGCTAGAGACATGAAGAGGCTTGAAGAAAAGGACAAGGAAAGAAAAAACGTAAAGGGTATTCGA
GATGACATTGAAGAGGAAGATGACCAAGAAGCTTATTTTCGATACATGGCAGAAAACCCAACTGCTGGTGTGGTTCAGGAGGAAGAGGAA
GACAATCTAGAATATGATAGTGACGGAAATCCAATTGCACCTACCAAAAAAATCATTGATCCTCTTCCCCCCATTGATCATTCAGAGATT
GACTATCCACCATTTGAAAAAAACTTTTACAATGAGCATGAAGAGATAACCAACCTCACTCCACAGCAGTTAATAGATCTCCGGCATAAG
CTCAATCTTCGGGTCTCTGGTGCTGCACCTCCTAGACCAGGAAGTAGCTTTGCTCATTTTGGGTTTGACGAACAACTTATGCACCAGATT
CGGAAATCTGAATACACACAGCCCACTCCAATACAGTGCCAGCCCCCTGGCCACTGTTCTAGGTGCTGTTGTTCTACTAAACAAGGAAAC
AGTCAAGAGTCATCGAATACCATTAAGAAGGATCATACAGGGAAATCCAAGATACCCAAAATATATTTTGGGACACGCACACACAAGCAG
ATTGCTCAGATTACTAGAGAGCTCCGGAGGACGGCATATTCAGGGGTTCCAATGACTATTCTTTCCAGCAGGGATCATACTTGTGTCCAT
CCTGAGGTAGTCGGTAACTTCAACAGAAATGAGAAGTGCATGGAATTGCTAGATGGGAAAAACGGAAAATCCTGCTATTTTTATCATGGA
GTTCATAAAATTAGTGATCAGCACACATTACAGACTTTCCAAGGGATGTGCAAAGCCTGGGATATAGAAGAACTTGTCAGCCTGGGGAAG
AAACTAAAGGCCTGTCCATATTACACAGCCCGAGAACTAATACAAGATGCTGACATCATATTTTGTCCCTACAACTATCTTCTAGATGCA
CAAATAAGGGAAAGTATGGATTTAAATCTGAAAGAACAGGTTGTCATTTTAGATGAAGCTCATAACATCGAGGACTGTGCTCGGGAATCA
GCAAGTTACAGTGTAACAGAAGTTCAGCTTCGGTTTGCTCGGGATGAACTAGATAGTATGGTCAACAATAATATAAGGAAGAAAGATCAT
GAACCCCTACGAGCTGTGTGCTGTAGCCTCATTAATTGGTTAGAAGCAAACGCTGAATATCTTGTAGAAAGAGATTATGAATCAGCTTGT
AAAATATGGAGTGGAAATGAAATGCTCTTAACTTTACACAAAATGGGTATCACCACTGCTACTTTTCCCATTTTGCAGGGACATTTTTCT
GCTGTTCTTCAAAAAGAGGAAAAAATCTCACCAATTTATGGTAAAGAGGAGGCAAGAGAAGTACCTGTTATTAGTGCATCAACTCAAATA
ATGCTTAAAGGACTTTTTATGGTACTTGACTATCTTTTTAGGCAAAATAGCAGATTTGCAGATGATTATAAAATTGCGATTCAACAGACT
TACTCCTGGACAAATCAGATTGATATTTCAGACAAAAATGGGTTGTTGGTTCTACCAAAAAATAAGAAACGTTCACGACAGAAAACTGCA
GTTCATGTGCTAAACTTTTGGTGCTTAAATCCAGCTGTGGCCTTTTCAGATATTAATGGCAAAGTTCAGACCATTGTTTTGACATCTGGT
ACATTATCACCAATGAAATCCTTTTCGTCAGAACTTGGTGTTACATTTACTATCCAGCTGGAGGCTAATCATATCATTAAAAATTCACAG
GTTTGGGTTGGTACCATTGGGTCAGGCCCCAAGGGTCGGAATCTCTGTGCTACCTTCCAGAATACTGAAACATTTGAGTTCCAAGATGAA
GTGGGAGCACTTTTGTTATCTGTGTGCCAGACTGTGAGCCAAGGAATTTTGTGTTTCTTGCCATCTTACAAGTTATTAGAAAAATTAAAA
GAACGTTGGCTCTCTACTGGTTTATGGCATAATCTGGAGTTGGTGAAGACAGTCATTGTAGAACCACAGGGAGGAGAAAAAACAAATTTT
GATGAATTACTGCAGGTGTACTATGACGCAATCAAATACAAAGGAGAGAAAGATGGAGCTCTCCTGGTAGCAGTTTGTCGTGGTAAAGTG
AGTGAGGGTCTGGATTTCTCAGATGACAATGCCCGTGCTGTCATAACAATAGGAATTCCTTTTCCAAATGTGAAAGATCTACAGGTTGAA
CTAAAACGACAATACAATGACCACCATTCAAAATTGAGAGGTCTTCTACCTGGCCGTCAGTGGTATGAAATTCAAGCATACAGGGCCTTA
AACCAGGCCCTTGGTAGATGTATTAGACACAGAAATGATTGGGGAGCTCTTATTCTAGTGGATGATCGCTTTAGGAATAACCCAAGTCGC
TATATATCTGGACTTTCTAAATGGGTACGGCAGCAGATTCAGCACCATTCAACCTTTGAAAGTGCACTGGAATCCTTGGCTGAATTTTCC
AAAAAGCATCAAAAAGTTCTTAATGTATCCATAAAGGACAGAACCAATATACAGGACAATGAGTCTACACTTGAAGTGACCTCTTTAAAG
TACAGTACCTCACCTTATTTACTGGAAGCAGCAAGTCATCTATCACCAGAAAATTTTGTGGAAGATGAAGCAAAGATATGTGTCCAGGAA
CTACAGTGTCCTAAAATTATTACCAAAAATTCACCTCTACCAAGTAGCATTATCTCCAGAAAGGAGAAAAATGATCCAGTATTCCTGGAA
GAAGCAGGGAAAGCAGAAAAAATTGTGATTTCCAGATCCACAAGCCCAACTTTCAACAAACAAACAAAGAGAGTTAGCTGGTCAAGCTTT
AATTCTTTGGGACAGTATTTTACTGGTAAAATACCGAAGGCAACACCTGAGCTCGGGTCATCAGAGAATAGTGCCTCTAGTCCTCCCCGT
TTCAAAACAGAGAAGATGGAAAGTAAAACTGTTTTGCCCTTCACTGATAAATGTGAATCCTCAAATCTGACAGTAAACACATCGTTTGGA
TCATGCCCTCAATCAGAAACCATTATTTCATCATTAAAGATTGATGCCACCCTTACTAGAAAAAATCATTCTGAACATCCGCTCTGTTCT
GAAGAAGCCCTGGATCCAGACATTGAATTGTCTCTAGTAAGTGAAGAAGATAAACAGTCCACTTCAAATAGAGATTTTGAAACAGAAGCA
GAAGATGAATCTATCTATTTTACACCTGAACTTTATGATCCTGAAGATACAGATGAAGAAAAAAATGACCTAGCTGAAACTGATAGAGGA
AATAGATTGGCTAACAATTCAGATTGCATTTTAGCTAAAGACCTTTTTGAAATTAGAACTATAAAAGAAGTAGATTCAGCCAGAGAAGTG
AAAGCTGAGGATTGCATAGATACAAAGTTGAATGGAATTCTGCATATTGAAGAAAGTAAAATTGATGACATTGATGGTAATGTAAAAACA
ACTTGGATAAATGAACTGGAACTGGGAAAAACTCATGAAATAGAAATAAAGAACTTTAAACCATCTCCTTCCAAAAATAAAGGCATGTTT
CCTGGTTTTAAGTAATAATACTTAACTCTCAAGCTAAGTAAAAATATGTCATCATGCTTATGTTAAACTCTGTTGTAAGTAATAATTTGT
AAATTGAATAAGTGGCATACTTTTTAAAAAACTATTTTATGTTCAGAAATGTAAATGTTATTATTCTTGAGTTTTTGGGTTTTTTTTTTT
GAGACAGAGTCTTGGTCTGTTGCCCAGGCTGGAATGCAGTGGTGTGCTCTGGGCTCACTGCAACCTTCACCTCCAGGTTCAAGTGATTCT
CCTGCCTCAGCCTTCTGAGTAGCTGGGACTACAGGTGTGCACCACCATGCCCAGCTAGTTTTTGTATTTTTAGTAGAGATGGGGTTTCAC
CATGTTGGCCAGGCTGGTCTCGAACTCCTGGCCTCGTGATCTGCCCTTCTCTGCCTCCCTAAGTTGCTGGGATTACAGGTGTGAGCCACA
GTGCCTGGCCCATTCTTGAGTTTTGATAAAGTAATTCATACAAAGTACTGTCCTCAAATAAGTCTTCCTTAGCTAAATGCAATTTAAAAT
TATTCAAAGATCCTAGGGCACTTCTAGTTTCACGTAAATATTCATATTAGGTGGTTCTCTTCATCCATTTGTTTTCACACTGATACATAA
AAATTAACAGCAGTCTAATCTAGTGACACCTCAGTCATATTTCGCTATAGATTTTACCTCAAATCAGTCCAAGACTTTTTCAGAGATCAC
CATTTGTCTTGAAAGGTTTATTTCGTTATTAAACTGCCTACTTATAAGTAATTAAGAGAAATTAAGAAAGTAGTATGCATTTTTAATTGA
AATTGTTTTACATTCTTTGTATAATAAACCTAAAACCAAACATGTCATAAACAAATTGACGTAAAGATATAAAATGCCAAATGAAGTATT
CCAAATTTTCTATTCTAATTATTTAGCTTCACCATCATTGTGGAAAAAAATACTAGATCCTGCTTAGTATTATATATTTTTCCTAGTGGA
TCAGTGAGTAATAAGTACCAAACACTAGACTAGAAGGTAATTTCTACATTGTTTAGAAAGGGTGAAACAATTTATCCCCTCTGGTATTGT
TCTAGCATAAGCTTTAGTTATACAATGATTAAGATAGAAAACTTCATATATAAATTTGATAAGCAAACCCACATTTATAGCTGCAGCTAA
AATATGTTTCCTTAGGGCACAGTAATCCTTTCTGTGAATTTTGACCTTGTTTGTGTTTTTGTGAATGAAGCTATATGTCTAATCAAAAAT
GATTATAAAAGAGGCTCATCTCTGACATCATTCCAAAAATACATTCATTGATCTCTTTTTAAGAAACATCTGTTATTCACTGGGCATTGG
GACTTTTTGTGAGTAATTTGAATTGAAATTTTATGAGCTATCCAAGAATTCTGTATGGTCTATTATTTTCAAGTCAAAATTTCCAGTAAG
GATTTACTTTACATTTCATTTGGATAAATGAATCATTATATAGGTATGTCTTTGCTTCCATTTTGAGACATTTAGATTTTTACAGCCTGT
TTCTATAGCATTTGATGTTACAACTCTAAGCGTAGTTCAAAGACATTTAAATTGACAAGTTACCAGTTAAAGAATTTAGAATATATTAGA
TCCCATCTAGTATTATATATTTTTTCTAGTTGATCATTGAGCAGTAAATACCAAATACTCGATTAGAAGGTAATTTTTACATTGTTTTGA
AAGGGTGAAACAATTTATCTCCTCTGGTATTATTCTTAAACCACAGATAGGGATAGTAGGGTAGTGAAACGAATAAATACCTGGTAGAAG
ACAAGAGACTTGGGCTCTACACCTGGCTCTGCCACTGATTTGCTAAGTCATATTGGCAATCACCACACCCTTCAGGGAATTAGTTTCATC
TGTAAAATGCAGCGGTTAGTACTATAAAATCATACAAATTTCTTTGTGCTTTGAGAATCTATAAAGGAATGTCTGTTGATATTCTGAGTC

>In-frame_ENST00000389924_ENST00000259008_TCGA-A2-A25B-01A_DDX42_chr17_61884014_+_BRIP1_chr17_59886118_length(amino acids)=1322AA_start in transcript=186_stop in transcript=4154
MNWNKGGPGTKRGFGFGGFAISAGKKEEPKLPQQSHSAFGATSSSSGFGKSAPPQLPSFYKIGSKRANFDEENAYFEDEEEDSSNVDLPY
IPAENSPTRQQFHSKPVDSDSDDDPLEAFMAEVEDQAARDMKRLEEKDKERKNVKGIRDDIEEEDDQEAYFRYMAENPTAGVVQEEEEDN
LEYDSDGNPIAPTKKIIDPLPPIDHSEIDYPPFEKNFYNEHEEITNLTPQQLIDLRHKLNLRVSGAAPPRPGSSFAHFGFDEQLMHQIRK
SEYTQPTPIQCQPPGHCSRCCCSTKQGNSQESSNTIKKDHTGKSKIPKIYFGTRTHKQIAQITRELRRTAYSGVPMTILSSRDHTCVHPE
VVGNFNRNEKCMELLDGKNGKSCYFYHGVHKISDQHTLQTFQGMCKAWDIEELVSLGKKLKACPYYTARELIQDADIIFCPYNYLLDAQI
RESMDLNLKEQVVILDEAHNIEDCARESASYSVTEVQLRFARDELDSMVNNNIRKKDHEPLRAVCCSLINWLEANAEYLVERDYESACKI
WSGNEMLLTLHKMGITTATFPILQGHFSAVLQKEEKISPIYGKEEAREVPVISASTQIMLKGLFMVLDYLFRQNSRFADDYKIAIQQTYS
WTNQIDISDKNGLLVLPKNKKRSRQKTAVHVLNFWCLNPAVAFSDINGKVQTIVLTSGTLSPMKSFSSELGVTFTIQLEANHIIKNSQVW
VGTIGSGPKGRNLCATFQNTETFEFQDEVGALLLSVCQTVSQGILCFLPSYKLLEKLKERWLSTGLWHNLELVKTVIVEPQGGEKTNFDE
LLQVYYDAIKYKGEKDGALLVAVCRGKVSEGLDFSDDNARAVITIGIPFPNVKDLQVELKRQYNDHHSKLRGLLPGRQWYEIQAYRALNQ
ALGRCIRHRNDWGALILVDDRFRNNPSRYISGLSKWVRQQIQHHSTFESALESLAEFSKKHQKVLNVSIKDRTNIQDNESTLEVTSLKYS
TSPYLLEAASHLSPENFVEDEAKICVQELQCPKIITKNSPLPSSIISRKEKNDPVFLEEAGKAEKIVISRSTSPTFNKQTKRVSWSSFNS
LGQYFTGKIPKATPELGSSENSASSPPRFKTEKMESKTVLPFTDKCESSNLTVNTSFGSCPQSETIISSLKIDATLTRKNHSEHPLCSEE
ALDPDIELSLVSEEDKQSTSNRDFETEAEDESIYFTPELYDPEDTDEEKNDLAETDRGNRLANNSDCILAKDLFEIRTIKEVDSAREVKA

--------------------------------------------------------------
>In-frame_ENST00000389924_ENST00000577598_TCGA-A2-A25B-01A_DDX42_chr17_61884014_+_BRIP1_chr17_59886118_length(transcript)=4374nt_BP=1032nt
TGGCGGTGGTGGCGGTGGCGGCGGCGGTGGTGGTGGTGGCGGCGGCGGCGGCGAAGGGGGCGGAGAGGAAGGAGCGCGGCGGGACCGGGC
CGGGACAGCGCGTACTTTGGGCTCCGGGATTCGCTCCGCGCCCGCGGTTGTAGCAGCTGCCGCTGCAGCCATAGCAGCAGGTCAGTCATT
GGCACCATGAACTGGAATAAAGGTGGTCCTGGCACTAAGCGAGGATTTGGCTTTGGAGGTTTTGCCATCAGTGCTGGGAAAAAGGAGGAA
CCCAAACTCCCACAGCAGTCCCACAGTGCCTTTGGGGCAACCAGCTCTTCTTCTGGATTTGGAAAGTCAGCTCCACCACAGCTTCCTTCT
TTCTACAAAATTGGATCTAAGCGGGCCAACTTTGATGAAGAAAATGCCTATTTTGAAGATGAGGAAGAAGATTCTAGCAACGTTGATTTA
CCTTACATTCCTGCTGAAAACTCACCAACTCGCCAGCAATTCCATTCCAAGCCAGTAGATTCTGACAGCGATGATGATCCCTTGGAGGCA
TTCATGGCTGAAGTGGAGGATCAGGCAGCTAGAGACATGAAGAGGCTTGAAGAAAAGGACAAGGAAAGAAAAAACGTAAAGGGTATTCGA
GATGACATTGAAGAGGAAGATGACCAAGAAGCTTATTTTCGATACATGGCAGAAAACCCAACTGCTGGTGTGGTTCAGGAGGAAGAGGAA
GACAATCTAGAATATGATAGTGACGGAAATCCAATTGCACCTACCAAAAAAATCATTGATCCTCTTCCCCCCATTGATCATTCAGAGATT
GACTATCCACCATTTGAAAAAAACTTTTACAATGAGCATGAAGAGATAACCAACCTCACTCCACAGCAGTTAATAGATCTCCGGCATAAG
CTCAATCTTCGGGTCTCTGGTGCTGCACCTCCTAGACCAGGAAGTAGCTTTGCTCATTTTGGGTTTGACGAACAACTTATGCACCAGATT
CGGAAATCTGAATACACACAGCCCACTCCAATACAGTGCCAGCCCCCTGGCCACTGTTCTAGGTGCTGTTGTTCTACTAAACAAGGAAAC
AGTCAAGAGTCATCGAATACCATTAAGAAGGATCATACAGGGAAATCCAAGATACCCAAAATATATTTTGGGACACGCACACACAAGCAG
ATTGCTCAGATTACTAGAGAGCTCCGGAGGACGGCATATTCAGGGGTTCCAATGACTATTCTTTCCAGCAGGGATCATACTTGTGTCCAT
CCTGAGGTAGTCGGTAACTTCAACAGAAATGAGAAGTGCATGGAATTGCTAGATGGGAAAAACGGAAAATCCTGCTATTTTTATCATGGA
GTTCATAAAATTAGTGATCAGCACACATTACAGACTTTCCAAGGGATGTGCAAAGCCTGGGATATAGAAGAACTTGTCAGCCTGGGGAAG
AAACTAAAGGCCTGTCCATATTACACAGCCCGAGAACTAATACAAGATGCTGACATCATATTTTGTCCCTACAACTATCTTCTAGATGCA
CAAATAAGGGAAAGTATGGATTTAAATCTGAAAGAACAGGTTGTCATTTTAGATGAAGCTCATAACATCGAGGACTGTGCTCGGGAATCA
GCAAGTTACAGTGTAACAGAAGTTCAGCTTCGGTTTGCTCGGGATGAACTAGATAGTATGGTCAACAATAATATAAGGAAGAAAGATCAT
GAACCCCTACGAGCTGTGTGCTGTAGCCTCATTAATTGGTTAGAAGCAAACGCTGAATATCTTGTAGAAAGAGATTATGAATCAGCTTGT
AAAATATGGAGTGGAAATGAAATGCTCTTAACTTTACACAAAATGGGTATCACCACTGCTACTTTTCCCATTTTGCAGGGACATTTTTCT
GCTGTTCTTCAAAAAGAGGAAAAAATCTCACCAATTTATGGTAAAGAGGAGGCAAGAGAAGTACCTGTTATTAGTGCATCAACTCAAATA
ATGCTTAAAGGACTTTTTATGGTACTTGACTATCTTTTTAGGCAAAATAGCAGATTTGCAGATGATTATAAAATTGCGATTCAACAGACT
TACTCCTGGACAAATCAGATTGATATTTCAGACAAAAATGGGTTGTTGGTTCTACCAAAAAATAAGAAACGTTCACGACAGAAAACTGCA
GTTCATGTGCTAAACTTTTGGTGCTTAAATCCAGCTGTGGCCTTTTCAGATATTAATGGCAAAGTTCAGACCATTGTTTTGACATCTGGT
ACATTATCACCAATGAAATCCTTTTCGTCAGAACTTGGTGTTACATTTACTATCCAGCTGGAGGCTAATCATATCATTAAAAATTCACAG
GTTTGGGTTGGTACCATTGGGTCAGGCCCCAAGGGTCGGAATCTCTGTGCTACCTTCCAGAATACTGAAACATTTGAGTTCCAAGATGAA
GTGGGAGCACTTTTGTTATCTGTGTGCCAGACTGTGAGCCAAGGAATTTTGTGTTTCTTGCCATCTTACAAGTTATTAGAAAAATTAAAA
GAACGTTGGCTCTCTACTGGTTTATGGCATAATCTGGAGTTGGTGAAGACAGTCATTGTAGAACCACAGGGAGGAGAAAAAACAAATTTT
GATGAATTACTGCAGGTGTACTATGACGCAATCAAATACAAAGGAGAGAAAGATGGAGCTCTCCTGGTAGCAGTTTGTCGTGGTAAAGTG
AGTGAGGGTCTGGATTTCTCAGATGACAATGCCCGTGCTGTCATAACAATAGGAATTCCTTTTCCAAATGTGAAAGATCTACAGGTTGAA
CTAAAACGACAATACAATGACCACCATTCAAAATTGAGAGGTCTTCTACCTGGCCGTCAGTGGTATGAAATTCAAGCATACAGGGCCTTA
AACCAGGCCCTTGGTAGATGTATTAGACACAGAAATGATTGGGGAGCTCTTATTCTAGTGGATGATCGCTTTAGGAATAACCCAAGTCGC
TATATATCTGGACTTTCTAAATGGGTACGGCAGCAGATTCAGCACCATTCAACCTTTGAAAGTGCACTGGAATCCTTGGCTGAATTTTCC
AAAAAGCATCAAAAAGTTCTTAATGTATCCATAAAGGACAGAACCAATATACAGGACAATGAGTCTACACTTGAAGTGACCTCTTTAAAG
TACAGTACCTCACCTTATTTACTGGAAGCAGCAAGTCATCTATCACCAGAAAATTTTGTGGAAGATGAAGCAAAGATATGTGTCCAGGAA
CTACAGTGTCCTAAAATTATTACCAAAAATTCACCTCTACCAAGTAGCATTATCTCCAGAAAGGAGAAAAGTATGAAAAGTTCTTCCCAT
TTACCTTTGATAGAGAAGTCTTTCATTATATTTAGTGAAATGATATTTATTTGGGTATAGATTAATTCCTTAAATATGGTGGTTTGTAAT
ATAAGGTGTTATCATAAAATAGTGAAACAGTATGGTGTACTGTAATGGGAACAAACTTTTGTCAGGAGACCAGAGCATATTTTCTGGTTT
TCCACTAACTGGCTTTGCCACTTACTAGCTTTGTGATCATGAGCAAGTCATTTGTCCTTTTTGAGTCGTAATAGGAAAAAAAAAATGCCT
GCCTAGCTATCCCTTCAGGTTGGGTTGTAAAGGTCAAAATTATAAATATCACAGCATTGTAAAGTACCATGTAAGTGGTAGATGTTATTC
TAAAGGCTATATAAAAATTTGGCCTAATTTTTATGTAGATACTTCTATATGAACTACTTTTCCTATATAGATAGTTCTTATGAACTTATT
TTTAGGAGGTGAGAGACATTTATTTTAAGTGATGAAAAATAATATTTTAAAATATTTTGAAATAATCATCTGTATCAGATTGGCAAACTG
TGGCCCATGGGCCAAATTTGGCCTGCTGCCTGTTTTTGTAAATAAAGTTTAATGAAATGTAGTCATGCCCATTTATTTACATTTTAGAAA
CAACAGCAGAGTTGAGTATTTGTGTGTATTGCACTAGAACAGCATAATTGAGTAGTCGCAACAGATACATTATGCTCCACAAAGCCTAAA
TATTACTATCTGGCCTATGACAGAAAAGGTTTGCCAAACTCTGGTCTATTCCATTGGATATAATTTCAGTTGTTTTAATTCATATATCCA
AGGCGGGTGGATCATCCGAGGTCAGGAGTCCGAGACCAGCCTGACCAGTGTGGTGAAACACCGTCTCTACTAAAAAAATACAAAAATTAG
CTGGGTGTGGAGGCAGCTGTCTGTAATCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATTGCTTGAACTGGGAGGTGGAGGTTGCAGTGA

>In-frame_ENST00000389924_ENST00000577598_TCGA-A2-A25B-01A_DDX42_chr17_61884014_+_BRIP1_chr17_59886118_length(amino acids)=1067AA_start in transcript=186_stop in transcript=3389
MNWNKGGPGTKRGFGFGGFAISAGKKEEPKLPQQSHSAFGATSSSSGFGKSAPPQLPSFYKIGSKRANFDEENAYFEDEEEDSSNVDLPY
IPAENSPTRQQFHSKPVDSDSDDDPLEAFMAEVEDQAARDMKRLEEKDKERKNVKGIRDDIEEEDDQEAYFRYMAENPTAGVVQEEEEDN
LEYDSDGNPIAPTKKIIDPLPPIDHSEIDYPPFEKNFYNEHEEITNLTPQQLIDLRHKLNLRVSGAAPPRPGSSFAHFGFDEQLMHQIRK
SEYTQPTPIQCQPPGHCSRCCCSTKQGNSQESSNTIKKDHTGKSKIPKIYFGTRTHKQIAQITRELRRTAYSGVPMTILSSRDHTCVHPE
VVGNFNRNEKCMELLDGKNGKSCYFYHGVHKISDQHTLQTFQGMCKAWDIEELVSLGKKLKACPYYTARELIQDADIIFCPYNYLLDAQI
RESMDLNLKEQVVILDEAHNIEDCARESASYSVTEVQLRFARDELDSMVNNNIRKKDHEPLRAVCCSLINWLEANAEYLVERDYESACKI
WSGNEMLLTLHKMGITTATFPILQGHFSAVLQKEEKISPIYGKEEAREVPVISASTQIMLKGLFMVLDYLFRQNSRFADDYKIAIQQTYS
WTNQIDISDKNGLLVLPKNKKRSRQKTAVHVLNFWCLNPAVAFSDINGKVQTIVLTSGTLSPMKSFSSELGVTFTIQLEANHIIKNSQVW
VGTIGSGPKGRNLCATFQNTETFEFQDEVGALLLSVCQTVSQGILCFLPSYKLLEKLKERWLSTGLWHNLELVKTVIVEPQGGEKTNFDE
LLQVYYDAIKYKGEKDGALLVAVCRGKVSEGLDFSDDNARAVITIGIPFPNVKDLQVELKRQYNDHHSKLRGLLPGRQWYEIQAYRALNQ
ALGRCIRHRNDWGALILVDDRFRNNPSRYISGLSKWVRQQIQHHSTFESALESLAEFSKKHQKVLNVSIKDRTNIQDNESTLEVTSLKYS

--------------------------------------------------------------
>In-frame_ENST00000457800_ENST00000259008_TCGA-A2-A25B-01A_DDX42_chr17_61884014_+_BRIP1_chr17_59886118_length(transcript)=5999nt_BP=846nt
ATGAACTGGAATAAAGGTGGTCCTGGCACTAAGCGAGGATTTGGCTTTGGAGGTTTTGCCATCAGTGCTGGGAAAAAGGAGGAACCCAAA
CTCCCACAGCAGTCCCACAGTGCCTTTGGGGCAACCAGCTCTTCTTCTGGATTTGGAAAGTCAGCTCCACCACAGCTTCCTTCTTTCTAC
AAAATTGGATCTAAGCGGGCCAACTTTGATGAAGAAAATGCCTATTTTGAAGATGAGGAAGAAGATTCTAGCAACGTTGATTTACCTTAC
ATTCCTGCTGAAAACTCACCAACTCGCCAGCAATTCCATTCCAAGCCAGTAGATTCTGACAGCGATGATGATCCCTTGGAGGCATTCATG
GCTGAAGTGGAGGATCAGGCAGCTAGAGACATGAAGAGGCTTGAAGAAAAGGACAAGGAAAGAAAAAACGTAAAGGGTATTCGAGATGAC
ATTGAAGAGGAAGATGACCAAGAAGCTTATTTTCGATACATGGCAGAAAACCCAACTGCTGGTGTGGTTCAGGAGGAAGAGGAAGACAAT
CTAGAATATGATAGTGACGGAAATCCAATTGCACCTACCAAAAAAATCATTGATCCTCTTCCCCCCATTGATCATTCAGAGATTGACTAT
CCACCATTTGAAAAAAACTTTTACAATGAGCATGAAGAGATAACCAACCTCACTCCACAGCAGTTAATAGATCTCCGGCATAAGCTCAAT
CTTCGGGTCTCTGGTGCTGCACCTCCTAGACCAGGAAGTAGCTTTGCTCATTTTGGGTTTGACGAACAACTTATGCACCAGATTCGGAAA
TCTGAATACACACAGCCCACTCCAATACAGTGCCAGCCCCCTGGCCACTGTTCTAGGTGCTGTTGTTCTACTAAACAAGGAAACAGTCAA
GAGTCATCGAATACCATTAAGAAGGATCATACAGGGAAATCCAAGATACCCAAAATATATTTTGGGACACGCACACACAAGCAGATTGCT
CAGATTACTAGAGAGCTCCGGAGGACGGCATATTCAGGGGTTCCAATGACTATTCTTTCCAGCAGGGATCATACTTGTGTCCATCCTGAG
GTAGTCGGTAACTTCAACAGAAATGAGAAGTGCATGGAATTGCTAGATGGGAAAAACGGAAAATCCTGCTATTTTTATCATGGAGTTCAT
AAAATTAGTGATCAGCACACATTACAGACTTTCCAAGGGATGTGCAAAGCCTGGGATATAGAAGAACTTGTCAGCCTGGGGAAGAAACTA
AAGGCCTGTCCATATTACACAGCCCGAGAACTAATACAAGATGCTGACATCATATTTTGTCCCTACAACTATCTTCTAGATGCACAAATA
AGGGAAAGTATGGATTTAAATCTGAAAGAACAGGTTGTCATTTTAGATGAAGCTCATAACATCGAGGACTGTGCTCGGGAATCAGCAAGT
TACAGTGTAACAGAAGTTCAGCTTCGGTTTGCTCGGGATGAACTAGATAGTATGGTCAACAATAATATAAGGAAGAAAGATCATGAACCC
CTACGAGCTGTGTGCTGTAGCCTCATTAATTGGTTAGAAGCAAACGCTGAATATCTTGTAGAAAGAGATTATGAATCAGCTTGTAAAATA
TGGAGTGGAAATGAAATGCTCTTAACTTTACACAAAATGGGTATCACCACTGCTACTTTTCCCATTTTGCAGGGACATTTTTCTGCTGTT
CTTCAAAAAGAGGAAAAAATCTCACCAATTTATGGTAAAGAGGAGGCAAGAGAAGTACCTGTTATTAGTGCATCAACTCAAATAATGCTT
AAAGGACTTTTTATGGTACTTGACTATCTTTTTAGGCAAAATAGCAGATTTGCAGATGATTATAAAATTGCGATTCAACAGACTTACTCC
TGGACAAATCAGATTGATATTTCAGACAAAAATGGGTTGTTGGTTCTACCAAAAAATAAGAAACGTTCACGACAGAAAACTGCAGTTCAT
GTGCTAAACTTTTGGTGCTTAAATCCAGCTGTGGCCTTTTCAGATATTAATGGCAAAGTTCAGACCATTGTTTTGACATCTGGTACATTA
TCACCAATGAAATCCTTTTCGTCAGAACTTGGTGTTACATTTACTATCCAGCTGGAGGCTAATCATATCATTAAAAATTCACAGGTTTGG
GTTGGTACCATTGGGTCAGGCCCCAAGGGTCGGAATCTCTGTGCTACCTTCCAGAATACTGAAACATTTGAGTTCCAAGATGAAGTGGGA
GCACTTTTGTTATCTGTGTGCCAGACTGTGAGCCAAGGAATTTTGTGTTTCTTGCCATCTTACAAGTTATTAGAAAAATTAAAAGAACGT
TGGCTCTCTACTGGTTTATGGCATAATCTGGAGTTGGTGAAGACAGTCATTGTAGAACCACAGGGAGGAGAAAAAACAAATTTTGATGAA
TTACTGCAGGTGTACTATGACGCAATCAAATACAAAGGAGAGAAAGATGGAGCTCTCCTGGTAGCAGTTTGTCGTGGTAAAGTGAGTGAG
GGTCTGGATTTCTCAGATGACAATGCCCGTGCTGTCATAACAATAGGAATTCCTTTTCCAAATGTGAAAGATCTACAGGTTGAACTAAAA
CGACAATACAATGACCACCATTCAAAATTGAGAGGTCTTCTACCTGGCCGTCAGTGGTATGAAATTCAAGCATACAGGGCCTTAAACCAG
GCCCTTGGTAGATGTATTAGACACAGAAATGATTGGGGAGCTCTTATTCTAGTGGATGATCGCTTTAGGAATAACCCAAGTCGCTATATA
TCTGGACTTTCTAAATGGGTACGGCAGCAGATTCAGCACCATTCAACCTTTGAAAGTGCACTGGAATCCTTGGCTGAATTTTCCAAAAAG
CATCAAAAAGTTCTTAATGTATCCATAAAGGACAGAACCAATATACAGGACAATGAGTCTACACTTGAAGTGACCTCTTTAAAGTACAGT
ACCTCACCTTATTTACTGGAAGCAGCAAGTCATCTATCACCAGAAAATTTTGTGGAAGATGAAGCAAAGATATGTGTCCAGGAACTACAG
TGTCCTAAAATTATTACCAAAAATTCACCTCTACCAAGTAGCATTATCTCCAGAAAGGAGAAAAATGATCCAGTATTCCTGGAAGAAGCA
GGGAAAGCAGAAAAAATTGTGATTTCCAGATCCACAAGCCCAACTTTCAACAAACAAACAAAGAGAGTTAGCTGGTCAAGCTTTAATTCT
TTGGGACAGTATTTTACTGGTAAAATACCGAAGGCAACACCTGAGCTCGGGTCATCAGAGAATAGTGCCTCTAGTCCTCCCCGTTTCAAA
ACAGAGAAGATGGAAAGTAAAACTGTTTTGCCCTTCACTGATAAATGTGAATCCTCAAATCTGACAGTAAACACATCGTTTGGATCATGC
CCTCAATCAGAAACCATTATTTCATCATTAAAGATTGATGCCACCCTTACTAGAAAAAATCATTCTGAACATCCGCTCTGTTCTGAAGAA
GCCCTGGATCCAGACATTGAATTGTCTCTAGTAAGTGAAGAAGATAAACAGTCCACTTCAAATAGAGATTTTGAAACAGAAGCAGAAGAT
GAATCTATCTATTTTACACCTGAACTTTATGATCCTGAAGATACAGATGAAGAAAAAAATGACCTAGCTGAAACTGATAGAGGAAATAGA
TTGGCTAACAATTCAGATTGCATTTTAGCTAAAGACCTTTTTGAAATTAGAACTATAAAAGAAGTAGATTCAGCCAGAGAAGTGAAAGCT
GAGGATTGCATAGATACAAAGTTGAATGGAATTCTGCATATTGAAGAAAGTAAAATTGATGACATTGATGGTAATGTAAAAACAACTTGG
ATAAATGAACTGGAACTGGGAAAAACTCATGAAATAGAAATAAAGAACTTTAAACCATCTCCTTCCAAAAATAAAGGCATGTTTCCTGGT
TTTAAGTAATAATACTTAACTCTCAAGCTAAGTAAAAATATGTCATCATGCTTATGTTAAACTCTGTTGTAAGTAATAATTTGTAAATTG
AATAAGTGGCATACTTTTTAAAAAACTATTTTATGTTCAGAAATGTAAATGTTATTATTCTTGAGTTTTTGGGTTTTTTTTTTTGAGACA
GAGTCTTGGTCTGTTGCCCAGGCTGGAATGCAGTGGTGTGCTCTGGGCTCACTGCAACCTTCACCTCCAGGTTCAAGTGATTCTCCTGCC
TCAGCCTTCTGAGTAGCTGGGACTACAGGTGTGCACCACCATGCCCAGCTAGTTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATGTT
GGCCAGGCTGGTCTCGAACTCCTGGCCTCGTGATCTGCCCTTCTCTGCCTCCCTAAGTTGCTGGGATTACAGGTGTGAGCCACAGTGCCT
GGCCCATTCTTGAGTTTTGATAAAGTAATTCATACAAAGTACTGTCCTCAAATAAGTCTTCCTTAGCTAAATGCAATTTAAAATTATTCA
AAGATCCTAGGGCACTTCTAGTTTCACGTAAATATTCATATTAGGTGGTTCTCTTCATCCATTTGTTTTCACACTGATACATAAAAATTA
ACAGCAGTCTAATCTAGTGACACCTCAGTCATATTTCGCTATAGATTTTACCTCAAATCAGTCCAAGACTTTTTCAGAGATCACCATTTG
TCTTGAAAGGTTTATTTCGTTATTAAACTGCCTACTTATAAGTAATTAAGAGAAATTAAGAAAGTAGTATGCATTTTTAATTGAAATTGT
TTTACATTCTTTGTATAATAAACCTAAAACCAAACATGTCATAAACAAATTGACGTAAAGATATAAAATGCCAAATGAAGTATTCCAAAT
TTTCTATTCTAATTATTTAGCTTCACCATCATTGTGGAAAAAAATACTAGATCCTGCTTAGTATTATATATTTTTCCTAGTGGATCAGTG
AGTAATAAGTACCAAACACTAGACTAGAAGGTAATTTCTACATTGTTTAGAAAGGGTGAAACAATTTATCCCCTCTGGTATTGTTCTAGC
ATAAGCTTTAGTTATACAATGATTAAGATAGAAAACTTCATATATAAATTTGATAAGCAAACCCACATTTATAGCTGCAGCTAAAATATG
TTTCCTTAGGGCACAGTAATCCTTTCTGTGAATTTTGACCTTGTTTGTGTTTTTGTGAATGAAGCTATATGTCTAATCAAAAATGATTAT
AAAAGAGGCTCATCTCTGACATCATTCCAAAAATACATTCATTGATCTCTTTTTAAGAAACATCTGTTATTCACTGGGCATTGGGACTTT
TTGTGAGTAATTTGAATTGAAATTTTATGAGCTATCCAAGAATTCTGTATGGTCTATTATTTTCAAGTCAAAATTTCCAGTAAGGATTTA
CTTTACATTTCATTTGGATAAATGAATCATTATATAGGTATGTCTTTGCTTCCATTTTGAGACATTTAGATTTTTACAGCCTGTTTCTAT
AGCATTTGATGTTACAACTCTAAGCGTAGTTCAAAGACATTTAAATTGACAAGTTACCAGTTAAAGAATTTAGAATATATTAGATCCCAT
CTAGTATTATATATTTTTTCTAGTTGATCATTGAGCAGTAAATACCAAATACTCGATTAGAAGGTAATTTTTACATTGTTTTGAAAGGGT
GAAACAATTTATCTCCTCTGGTATTATTCTTAAACCACAGATAGGGATAGTAGGGTAGTGAAACGAATAAATACCTGGTAGAAGACAAGA
GACTTGGGCTCTACACCTGGCTCTGCCACTGATTTGCTAAGTCATATTGGCAATCACCACACCCTTCAGGGAATTAGTTTCATCTGTAAA
ATGCAGCGGTTAGTACTATAAAATCATACAAATTTCTTTGTGCTTTGAGAATCTATAAAGGAATGTCTGTTGATATTCTGAGTCGATTTT

>In-frame_ENST00000457800_ENST00000259008_TCGA-A2-A25B-01A_DDX42_chr17_61884014_+_BRIP1_chr17_59886118_length(amino acids)=1322AA_start in transcript=0_stop in transcript=3968
MNWNKGGPGTKRGFGFGGFAISAGKKEEPKLPQQSHSAFGATSSSSGFGKSAPPQLPSFYKIGSKRANFDEENAYFEDEEEDSSNVDLPY
IPAENSPTRQQFHSKPVDSDSDDDPLEAFMAEVEDQAARDMKRLEEKDKERKNVKGIRDDIEEEDDQEAYFRYMAENPTAGVVQEEEEDN
LEYDSDGNPIAPTKKIIDPLPPIDHSEIDYPPFEKNFYNEHEEITNLTPQQLIDLRHKLNLRVSGAAPPRPGSSFAHFGFDEQLMHQIRK
SEYTQPTPIQCQPPGHCSRCCCSTKQGNSQESSNTIKKDHTGKSKIPKIYFGTRTHKQIAQITRELRRTAYSGVPMTILSSRDHTCVHPE
VVGNFNRNEKCMELLDGKNGKSCYFYHGVHKISDQHTLQTFQGMCKAWDIEELVSLGKKLKACPYYTARELIQDADIIFCPYNYLLDAQI
RESMDLNLKEQVVILDEAHNIEDCARESASYSVTEVQLRFARDELDSMVNNNIRKKDHEPLRAVCCSLINWLEANAEYLVERDYESACKI
WSGNEMLLTLHKMGITTATFPILQGHFSAVLQKEEKISPIYGKEEAREVPVISASTQIMLKGLFMVLDYLFRQNSRFADDYKIAIQQTYS
WTNQIDISDKNGLLVLPKNKKRSRQKTAVHVLNFWCLNPAVAFSDINGKVQTIVLTSGTLSPMKSFSSELGVTFTIQLEANHIIKNSQVW
VGTIGSGPKGRNLCATFQNTETFEFQDEVGALLLSVCQTVSQGILCFLPSYKLLEKLKERWLSTGLWHNLELVKTVIVEPQGGEKTNFDE
LLQVYYDAIKYKGEKDGALLVAVCRGKVSEGLDFSDDNARAVITIGIPFPNVKDLQVELKRQYNDHHSKLRGLLPGRQWYEIQAYRALNQ
ALGRCIRHRNDWGALILVDDRFRNNPSRYISGLSKWVRQQIQHHSTFESALESLAEFSKKHQKVLNVSIKDRTNIQDNESTLEVTSLKYS
TSPYLLEAASHLSPENFVEDEAKICVQELQCPKIITKNSPLPSSIISRKEKNDPVFLEEAGKAEKIVISRSTSPTFNKQTKRVSWSSFNS
LGQYFTGKIPKATPELGSSENSASSPPRFKTEKMESKTVLPFTDKCESSNLTVNTSFGSCPQSETIISSLKIDATLTRKNHSEHPLCSEE
ALDPDIELSLVSEEDKQSTSNRDFETEAEDESIYFTPELYDPEDTDEEKNDLAETDRGNRLANNSDCILAKDLFEIRTIKEVDSAREVKA

--------------------------------------------------------------
>In-frame_ENST00000457800_ENST00000577598_TCGA-A2-A25B-01A_DDX42_chr17_61884014_+_BRIP1_chr17_59886118_length(transcript)=4188nt_BP=846nt
ATGAACTGGAATAAAGGTGGTCCTGGCACTAAGCGAGGATTTGGCTTTGGAGGTTTTGCCATCAGTGCTGGGAAAAAGGAGGAACCCAAA
CTCCCACAGCAGTCCCACAGTGCCTTTGGGGCAACCAGCTCTTCTTCTGGATTTGGAAAGTCAGCTCCACCACAGCTTCCTTCTTTCTAC
AAAATTGGATCTAAGCGGGCCAACTTTGATGAAGAAAATGCCTATTTTGAAGATGAGGAAGAAGATTCTAGCAACGTTGATTTACCTTAC
ATTCCTGCTGAAAACTCACCAACTCGCCAGCAATTCCATTCCAAGCCAGTAGATTCTGACAGCGATGATGATCCCTTGGAGGCATTCATG
GCTGAAGTGGAGGATCAGGCAGCTAGAGACATGAAGAGGCTTGAAGAAAAGGACAAGGAAAGAAAAAACGTAAAGGGTATTCGAGATGAC
ATTGAAGAGGAAGATGACCAAGAAGCTTATTTTCGATACATGGCAGAAAACCCAACTGCTGGTGTGGTTCAGGAGGAAGAGGAAGACAAT
CTAGAATATGATAGTGACGGAAATCCAATTGCACCTACCAAAAAAATCATTGATCCTCTTCCCCCCATTGATCATTCAGAGATTGACTAT
CCACCATTTGAAAAAAACTTTTACAATGAGCATGAAGAGATAACCAACCTCACTCCACAGCAGTTAATAGATCTCCGGCATAAGCTCAAT
CTTCGGGTCTCTGGTGCTGCACCTCCTAGACCAGGAAGTAGCTTTGCTCATTTTGGGTTTGACGAACAACTTATGCACCAGATTCGGAAA
TCTGAATACACACAGCCCACTCCAATACAGTGCCAGCCCCCTGGCCACTGTTCTAGGTGCTGTTGTTCTACTAAACAAGGAAACAGTCAA
GAGTCATCGAATACCATTAAGAAGGATCATACAGGGAAATCCAAGATACCCAAAATATATTTTGGGACACGCACACACAAGCAGATTGCT
CAGATTACTAGAGAGCTCCGGAGGACGGCATATTCAGGGGTTCCAATGACTATTCTTTCCAGCAGGGATCATACTTGTGTCCATCCTGAG
GTAGTCGGTAACTTCAACAGAAATGAGAAGTGCATGGAATTGCTAGATGGGAAAAACGGAAAATCCTGCTATTTTTATCATGGAGTTCAT
AAAATTAGTGATCAGCACACATTACAGACTTTCCAAGGGATGTGCAAAGCCTGGGATATAGAAGAACTTGTCAGCCTGGGGAAGAAACTA
AAGGCCTGTCCATATTACACAGCCCGAGAACTAATACAAGATGCTGACATCATATTTTGTCCCTACAACTATCTTCTAGATGCACAAATA
AGGGAAAGTATGGATTTAAATCTGAAAGAACAGGTTGTCATTTTAGATGAAGCTCATAACATCGAGGACTGTGCTCGGGAATCAGCAAGT
TACAGTGTAACAGAAGTTCAGCTTCGGTTTGCTCGGGATGAACTAGATAGTATGGTCAACAATAATATAAGGAAGAAAGATCATGAACCC
CTACGAGCTGTGTGCTGTAGCCTCATTAATTGGTTAGAAGCAAACGCTGAATATCTTGTAGAAAGAGATTATGAATCAGCTTGTAAAATA
TGGAGTGGAAATGAAATGCTCTTAACTTTACACAAAATGGGTATCACCACTGCTACTTTTCCCATTTTGCAGGGACATTTTTCTGCTGTT
CTTCAAAAAGAGGAAAAAATCTCACCAATTTATGGTAAAGAGGAGGCAAGAGAAGTACCTGTTATTAGTGCATCAACTCAAATAATGCTT
AAAGGACTTTTTATGGTACTTGACTATCTTTTTAGGCAAAATAGCAGATTTGCAGATGATTATAAAATTGCGATTCAACAGACTTACTCC
TGGACAAATCAGATTGATATTTCAGACAAAAATGGGTTGTTGGTTCTACCAAAAAATAAGAAACGTTCACGACAGAAAACTGCAGTTCAT
GTGCTAAACTTTTGGTGCTTAAATCCAGCTGTGGCCTTTTCAGATATTAATGGCAAAGTTCAGACCATTGTTTTGACATCTGGTACATTA
TCACCAATGAAATCCTTTTCGTCAGAACTTGGTGTTACATTTACTATCCAGCTGGAGGCTAATCATATCATTAAAAATTCACAGGTTTGG
GTTGGTACCATTGGGTCAGGCCCCAAGGGTCGGAATCTCTGTGCTACCTTCCAGAATACTGAAACATTTGAGTTCCAAGATGAAGTGGGA
GCACTTTTGTTATCTGTGTGCCAGACTGTGAGCCAAGGAATTTTGTGTTTCTTGCCATCTTACAAGTTATTAGAAAAATTAAAAGAACGT
TGGCTCTCTACTGGTTTATGGCATAATCTGGAGTTGGTGAAGACAGTCATTGTAGAACCACAGGGAGGAGAAAAAACAAATTTTGATGAA
TTACTGCAGGTGTACTATGACGCAATCAAATACAAAGGAGAGAAAGATGGAGCTCTCCTGGTAGCAGTTTGTCGTGGTAAAGTGAGTGAG
GGTCTGGATTTCTCAGATGACAATGCCCGTGCTGTCATAACAATAGGAATTCCTTTTCCAAATGTGAAAGATCTACAGGTTGAACTAAAA
CGACAATACAATGACCACCATTCAAAATTGAGAGGTCTTCTACCTGGCCGTCAGTGGTATGAAATTCAAGCATACAGGGCCTTAAACCAG
GCCCTTGGTAGATGTATTAGACACAGAAATGATTGGGGAGCTCTTATTCTAGTGGATGATCGCTTTAGGAATAACCCAAGTCGCTATATA
TCTGGACTTTCTAAATGGGTACGGCAGCAGATTCAGCACCATTCAACCTTTGAAAGTGCACTGGAATCCTTGGCTGAATTTTCCAAAAAG
CATCAAAAAGTTCTTAATGTATCCATAAAGGACAGAACCAATATACAGGACAATGAGTCTACACTTGAAGTGACCTCTTTAAAGTACAGT
ACCTCACCTTATTTACTGGAAGCAGCAAGTCATCTATCACCAGAAAATTTTGTGGAAGATGAAGCAAAGATATGTGTCCAGGAACTACAG
TGTCCTAAAATTATTACCAAAAATTCACCTCTACCAAGTAGCATTATCTCCAGAAAGGAGAAAAGTATGAAAAGTTCTTCCCATTTACCT
TTGATAGAGAAGTCTTTCATTATATTTAGTGAAATGATATTTATTTGGGTATAGATTAATTCCTTAAATATGGTGGTTTGTAATATAAGG
TGTTATCATAAAATAGTGAAACAGTATGGTGTACTGTAATGGGAACAAACTTTTGTCAGGAGACCAGAGCATATTTTCTGGTTTTCCACT
AACTGGCTTTGCCACTTACTAGCTTTGTGATCATGAGCAAGTCATTTGTCCTTTTTGAGTCGTAATAGGAAAAAAAAAATGCCTGCCTAG
CTATCCCTTCAGGTTGGGTTGTAAAGGTCAAAATTATAAATATCACAGCATTGTAAAGTACCATGTAAGTGGTAGATGTTATTCTAAAGG
CTATATAAAAATTTGGCCTAATTTTTATGTAGATACTTCTATATGAACTACTTTTCCTATATAGATAGTTCTTATGAACTTATTTTTAGG
AGGTGAGAGACATTTATTTTAAGTGATGAAAAATAATATTTTAAAATATTTTGAAATAATCATCTGTATCAGATTGGCAAACTGTGGCCC
ATGGGCCAAATTTGGCCTGCTGCCTGTTTTTGTAAATAAAGTTTAATGAAATGTAGTCATGCCCATTTATTTACATTTTAGAAACAACAG
CAGAGTTGAGTATTTGTGTGTATTGCACTAGAACAGCATAATTGAGTAGTCGCAACAGATACATTATGCTCCACAAAGCCTAAATATTAC
TATCTGGCCTATGACAGAAAAGGTTTGCCAAACTCTGGTCTATTCCATTGGATATAATTTCAGTTGTTTTAATTCATATATCCAAGGCGG
GTGGATCATCCGAGGTCAGGAGTCCGAGACCAGCCTGACCAGTGTGGTGAAACACCGTCTCTACTAAAAAAATACAAAAATTAGCTGGGT
GTGGAGGCAGCTGTCTGTAATCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATTGCTTGAACTGGGAGGTGGAGGTTGCAGTGAGCCAGG

>In-frame_ENST00000457800_ENST00000577598_TCGA-A2-A25B-01A_DDX42_chr17_61884014_+_BRIP1_chr17_59886118_length(amino acids)=1067AA_start in transcript=0_stop in transcript=3203
MNWNKGGPGTKRGFGFGGFAISAGKKEEPKLPQQSHSAFGATSSSSGFGKSAPPQLPSFYKIGSKRANFDEENAYFEDEEEDSSNVDLPY
IPAENSPTRQQFHSKPVDSDSDDDPLEAFMAEVEDQAARDMKRLEEKDKERKNVKGIRDDIEEEDDQEAYFRYMAENPTAGVVQEEEEDN
LEYDSDGNPIAPTKKIIDPLPPIDHSEIDYPPFEKNFYNEHEEITNLTPQQLIDLRHKLNLRVSGAAPPRPGSSFAHFGFDEQLMHQIRK
SEYTQPTPIQCQPPGHCSRCCCSTKQGNSQESSNTIKKDHTGKSKIPKIYFGTRTHKQIAQITRELRRTAYSGVPMTILSSRDHTCVHPE
VVGNFNRNEKCMELLDGKNGKSCYFYHGVHKISDQHTLQTFQGMCKAWDIEELVSLGKKLKACPYYTARELIQDADIIFCPYNYLLDAQI
RESMDLNLKEQVVILDEAHNIEDCARESASYSVTEVQLRFARDELDSMVNNNIRKKDHEPLRAVCCSLINWLEANAEYLVERDYESACKI
WSGNEMLLTLHKMGITTATFPILQGHFSAVLQKEEKISPIYGKEEAREVPVISASTQIMLKGLFMVLDYLFRQNSRFADDYKIAIQQTYS
WTNQIDISDKNGLLVLPKNKKRSRQKTAVHVLNFWCLNPAVAFSDINGKVQTIVLTSGTLSPMKSFSSELGVTFTIQLEANHIIKNSQVW
VGTIGSGPKGRNLCATFQNTETFEFQDEVGALLLSVCQTVSQGILCFLPSYKLLEKLKERWLSTGLWHNLELVKTVIVEPQGGEKTNFDE
LLQVYYDAIKYKGEKDGALLVAVCRGKVSEGLDFSDDNARAVITIGIPFPNVKDLQVELKRQYNDHHSKLRGLLPGRQWYEIQAYRALNQ
ALGRCIRHRNDWGALILVDDRFRNNPSRYISGLSKWVRQQIQHHSTFESALESLAEFSKKHQKVLNVSIKDRTNIQDNESTLEVTSLKYS

--------------------------------------------------------------

Top

Fusion Gene PPI Analysis for DDX42-BRIP1


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page.


check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with
TgeneBRIP1chr17:61884014chr17:59886118ENST00000259008520888_1063209.01250.0BRCA1


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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Related Drugs for DDX42-BRIP1


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.8 2021-05-08)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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Related Diseases for DDX42-BRIP1


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource
TgeneBRIP1C1836860FANCONI ANEMIA, COMPLEMENTATION GROUP J9CLINGEN;CTD_human;GENOMICS_ENGLAND;UNIPROT
TgeneBRIP1C0006142Malignant neoplasm of breast4CGI;CTD_human;GENOMICS_ENGLAND;UNIPROT
TgeneBRIP1C0015625Fanconi Anemia3CTD_human;GENOMICS_ENGLAND
TgeneBRIP1C0023418leukemia1CGI;GENOMICS_ENGLAND
TgeneBRIP1C0023465Acute monocytic leukemia1GENOMICS_ENGLAND
TgeneBRIP1C0023467Leukemia, Myelocytic, Acute1CGI;GENOMICS_ENGLAND
TgeneBRIP1C0030312Pancytopenia1GENOMICS_ENGLAND
TgeneBRIP1C0265219Miller Dieker syndrome1GENOMICS_ENGLAND
TgeneBRIP1C0496956Neoplasm of uncertain or unknown behavior of breast1CGI;GENOMICS_ENGLAND
TgeneBRIP1C0677776Hereditary Breast and Ovarian Cancer Syndrome1ORPHANET
TgeneBRIP1C0919267ovarian neoplasm1CTD_human
TgeneBRIP1C1140680Malignant neoplasm of ovary1CTD_human;UNIPROT
TgeneBRIP1C1855710Bone marrow hypocellularity1GENOMICS_ENGLAND
TgeneBRIP1C3463824MYELODYSPLASTIC SYNDROME1GENOMICS_ENGLAND
TgeneBRIP1C4228778Abnormality of radial ray1GENOMICS_ENGLAND