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Fusion Gene Summary | |
Fusion Gene ORF analysis | |
Fusion Genomic Features | |
Fusion Protein Features | |
Fusion Gene Sequence | |
Fusion Gene PPI analysis | |
Related Drugs | |
Related Diseases |
Fusion gene:DDX42-CCDC47 (FusionGDB2 ID:21993) |
Fusion Gene Summary for DDX42-CCDC47 |
Fusion gene summary |
Fusion gene information | Fusion gene name: DDX42-CCDC47 | Fusion gene ID: 21993 | Hgene | Tgene | Gene symbol | DDX42 | CCDC47 | Gene ID | 11325 | 57003 |
Gene name | DEAD-box helicase 42 | coiled-coil domain containing 47 | |
Synonyms | DDX42P|RHELP|RNAHP|SF3B8|SF3b125 | GK001|MSTP041|THNS | |
Cytomap | 17q23.3 | 17q23.3 | |
Type of gene | protein-coding | protein-coding | |
Description | ATP-dependent RNA helicase DDX42DEAD (Asp-Glu-Ala-Asp) box helicase 42DEAD (Asp-Glu-Ala-Asp) box polypeptide 42SF3b DEAD box proteinsplicing factor 3B-associated 125 kDa proteinsplicing factor 3b, subunit 8 | coiled-coil domain-containing protein 47Calumin | |
Modification date | 20200313 | 20200313 | |
UniProtAcc | . | Q96A33 | |
Ensembl transtripts involved in fusion gene | ENST00000578681, ENST00000583590, ENST00000359353, ENST00000389924, ENST00000457800, ENST00000582985, | ENST00000225726, ENST00000403162, ENST00000582252, | |
Fusion gene scores | * DoF score | 12 X 12 X 6=864 | 8 X 7 X 5=280 |
# samples | 14 | 8 | |
** MAII score | log2(14/864*10)=-2.6256044852185 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(8/280*10)=-1.8073549220576 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
Context | PubMed: DDX42 [Title/Abstract] AND CCDC47 [Title/Abstract] AND fusion [Title/Abstract] | ||
Most frequent breakpoint | DDX42(61894326)-CCDC47(61833930), # samples:1 | ||
Anticipated loss of major functional domain due to fusion event. |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
Partner | Gene | GO ID | GO term | PubMed ID |
Hgene | DDX42 | GO:0008104 | protein localization | 19377511 |
Fusion gene breakpoints across DDX42 (5'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
Fusion gene breakpoints across CCDC47 (3'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Source | Disease | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
ChimerDB4 | COAD | TCGA-AA-3854-01A | DDX42 | chr17 | 61894326 | + | CCDC47 | chr17 | 61833930 | - |
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Fusion Gene ORF analysis for DDX42-CCDC47 |
Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
In-frame | ENST00000578681 | ENST00000225726 | DDX42 | chr17 | 61894326 | + | CCDC47 | chr17 | 61833930 | - |
In-frame | ENST00000578681 | ENST00000403162 | DDX42 | chr17 | 61894326 | + | CCDC47 | chr17 | 61833930 | - |
In-frame | ENST00000578681 | ENST00000582252 | DDX42 | chr17 | 61894326 | + | CCDC47 | chr17 | 61833930 | - |
In-frame | ENST00000583590 | ENST00000225726 | DDX42 | chr17 | 61894326 | + | CCDC47 | chr17 | 61833930 | - |
In-frame | ENST00000583590 | ENST00000403162 | DDX42 | chr17 | 61894326 | + | CCDC47 | chr17 | 61833930 | - |
In-frame | ENST00000583590 | ENST00000582252 | DDX42 | chr17 | 61894326 | + | CCDC47 | chr17 | 61833930 | - |
In-frame | ENST00000359353 | ENST00000225726 | DDX42 | chr17 | 61894326 | + | CCDC47 | chr17 | 61833930 | - |
In-frame | ENST00000359353 | ENST00000403162 | DDX42 | chr17 | 61894326 | + | CCDC47 | chr17 | 61833930 | - |
In-frame | ENST00000359353 | ENST00000582252 | DDX42 | chr17 | 61894326 | + | CCDC47 | chr17 | 61833930 | - |
In-frame | ENST00000389924 | ENST00000225726 | DDX42 | chr17 | 61894326 | + | CCDC47 | chr17 | 61833930 | - |
In-frame | ENST00000389924 | ENST00000403162 | DDX42 | chr17 | 61894326 | + | CCDC47 | chr17 | 61833930 | - |
In-frame | ENST00000389924 | ENST00000582252 | DDX42 | chr17 | 61894326 | + | CCDC47 | chr17 | 61833930 | - |
In-frame | ENST00000457800 | ENST00000225726 | DDX42 | chr17 | 61894326 | + | CCDC47 | chr17 | 61833930 | - |
In-frame | ENST00000457800 | ENST00000403162 | DDX42 | chr17 | 61894326 | + | CCDC47 | chr17 | 61833930 | - |
In-frame | ENST00000457800 | ENST00000582252 | DDX42 | chr17 | 61894326 | + | CCDC47 | chr17 | 61833930 | - |
intron-3CDS | ENST00000582985 | ENST00000225726 | DDX42 | chr17 | 61894326 | + | CCDC47 | chr17 | 61833930 | - |
intron-3CDS | ENST00000582985 | ENST00000403162 | DDX42 | chr17 | 61894326 | + | CCDC47 | chr17 | 61833930 | - |
intron-3CDS | ENST00000582985 | ENST00000582252 | DDX42 | chr17 | 61894326 | + | CCDC47 | chr17 | 61833930 | - |
ORFfinder result based on the fusion transcript sequence of in-frame fusion genes. |
Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | Seq length (transcript) | BP loci (transcript) | Predicted start (transcript) | Predicted stop (transcript) | Seq length (amino acids) |
DeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated. |
Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | No-coding score | Coding score |
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Fusion Genomic Features for DDX42-CCDC47 |
FusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints. |
Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | 1-p | p (fusion gene breakpoint) |
Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page. |
Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page. |
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Fusion Protein Features for DDX42-CCDC47 |
Go to FGviewer for the breakpoints of chr17:61894326-chr17:61833930 - FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels. |
Main function of each fusion partner protein. (from UniProt) |
Hgene | Tgene |
. | CCDC47 |
FUNCTION: Might normally function as a transcriptional repressor. EWS-fusion-proteins (EFPS) may play a role in the tumorigenic process. They may disturb gene expression by mimicking, or interfering with the normal function of CTD-POLII within the transcription initiation complex. They may also contribute to an aberrant activation of the fusion protein target genes. | FUNCTION: Component of the PAT complex, an endoplasmic reticulum (ER)-resident membrane multiprotein complex that facilitates multi-pass membrane proteins insertion into membranes (PubMed:32814900). The PAT complex acts as an intramembrane chaperone by directly interacting with nascent transmembrane domains (TMDs), releasing its substrates upon correct folding, and is needed for optimal biogenesis of multi-pass membrane proteins (PubMed:32814900). WDR83OS/Asterix is the substrate-interacting subunit of the PAT complex, whereas CCDC47 is required to maintain the stability of WDR83OS/Asterix (PubMed:32814900). The PAT complex favors the binding to TMDs with exposed hydrophilic amino acids within the lipid bilayer and provides a membrane-embedded partially hydrophilic environment in which the first transmembrane domain binds (PubMed:32814900). Component of a ribosome-associated ER translocon complex involved in multi-pass membrane protein transport into the ER membrane and biogenesis (PubMed:32820719). Involved in the regulation of calcium ion homeostasis in the ER (PubMed:30401460). Required for proper protein degradation via the ERAD (ER-associated degradation) pathway (PubMed:25009997). Has an essential role in the maintenance of ER organization during embryogenesis (By similarity). {ECO:0000250|UniProtKB:Q9D024, ECO:0000269|PubMed:25009997, ECO:0000269|PubMed:30401460, ECO:0000269|PubMed:32814900, ECO:0000269|PubMed:32820719}. |
Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | DDX42 | chr17:61894326 | chr17:61833930 | ENST00000359353 | + | 16 | 17 | 116_157 | 585.0 | 820.0 | Coiled coil | Ontology_term=ECO:0000255 |
Hgene | DDX42 | chr17:61894326 | chr17:61833930 | ENST00000389924 | + | 17 | 18 | 116_157 | 704.0 | 939.0 | Coiled coil | Ontology_term=ECO:0000255 |
Hgene | DDX42 | chr17:61894326 | chr17:61833930 | ENST00000457800 | + | 16 | 17 | 116_157 | 704.0 | 939.0 | Coiled coil | Ontology_term=ECO:0000255 |
Hgene | DDX42 | chr17:61894326 | chr17:61833930 | ENST00000578681 | + | 18 | 19 | 116_157 | 704.0 | 939.0 | Coiled coil | Ontology_term=ECO:0000255 |
Hgene | DDX42 | chr17:61894326 | chr17:61833930 | ENST00000583590 | + | 18 | 19 | 116_157 | 704.0 | 939.0 | Coiled coil | Ontology_term=ECO:0000255 |
Hgene | DDX42 | chr17:61894326 | chr17:61833930 | ENST00000359353 | + | 16 | 17 | 175_178 | 585.0 | 820.0 | Compositional bias | Note=Poly-Glu |
Hgene | DDX42 | chr17:61894326 | chr17:61833930 | ENST00000359353 | + | 16 | 17 | 43_46 | 585.0 | 820.0 | Compositional bias | Note=Poly-Ser |
Hgene | DDX42 | chr17:61894326 | chr17:61833930 | ENST00000389924 | + | 17 | 18 | 175_178 | 704.0 | 939.0 | Compositional bias | Note=Poly-Glu |
Hgene | DDX42 | chr17:61894326 | chr17:61833930 | ENST00000389924 | + | 17 | 18 | 43_46 | 704.0 | 939.0 | Compositional bias | Note=Poly-Ser |
Hgene | DDX42 | chr17:61894326 | chr17:61833930 | ENST00000389924 | + | 17 | 18 | 654_659 | 704.0 | 939.0 | Compositional bias | Note=Poly-Gly |
Hgene | DDX42 | chr17:61894326 | chr17:61833930 | ENST00000457800 | + | 16 | 17 | 175_178 | 704.0 | 939.0 | Compositional bias | Note=Poly-Glu |
Hgene | DDX42 | chr17:61894326 | chr17:61833930 | ENST00000457800 | + | 16 | 17 | 43_46 | 704.0 | 939.0 | Compositional bias | Note=Poly-Ser |
Hgene | DDX42 | chr17:61894326 | chr17:61833930 | ENST00000457800 | + | 16 | 17 | 654_659 | 704.0 | 939.0 | Compositional bias | Note=Poly-Gly |
Hgene | DDX42 | chr17:61894326 | chr17:61833930 | ENST00000578681 | + | 18 | 19 | 175_178 | 704.0 | 939.0 | Compositional bias | Note=Poly-Glu |
Hgene | DDX42 | chr17:61894326 | chr17:61833930 | ENST00000578681 | + | 18 | 19 | 43_46 | 704.0 | 939.0 | Compositional bias | Note=Poly-Ser |
Hgene | DDX42 | chr17:61894326 | chr17:61833930 | ENST00000578681 | + | 18 | 19 | 654_659 | 704.0 | 939.0 | Compositional bias | Note=Poly-Gly |
Hgene | DDX42 | chr17:61894326 | chr17:61833930 | ENST00000583590 | + | 18 | 19 | 175_178 | 704.0 | 939.0 | Compositional bias | Note=Poly-Glu |
Hgene | DDX42 | chr17:61894326 | chr17:61833930 | ENST00000583590 | + | 18 | 19 | 43_46 | 704.0 | 939.0 | Compositional bias | Note=Poly-Ser |
Hgene | DDX42 | chr17:61894326 | chr17:61833930 | ENST00000583590 | + | 18 | 19 | 654_659 | 704.0 | 939.0 | Compositional bias | Note=Poly-Gly |
Hgene | DDX42 | chr17:61894326 | chr17:61833930 | ENST00000359353 | + | 16 | 17 | 284_459 | 585.0 | 820.0 | Domain | Helicase ATP-binding |
Hgene | DDX42 | chr17:61894326 | chr17:61833930 | ENST00000389924 | + | 17 | 18 | 284_459 | 704.0 | 939.0 | Domain | Helicase ATP-binding |
Hgene | DDX42 | chr17:61894326 | chr17:61833930 | ENST00000389924 | + | 17 | 18 | 487_632 | 704.0 | 939.0 | Domain | Helicase C-terminal |
Hgene | DDX42 | chr17:61894326 | chr17:61833930 | ENST00000457800 | + | 16 | 17 | 284_459 | 704.0 | 939.0 | Domain | Helicase ATP-binding |
Hgene | DDX42 | chr17:61894326 | chr17:61833930 | ENST00000457800 | + | 16 | 17 | 487_632 | 704.0 | 939.0 | Domain | Helicase C-terminal |
Hgene | DDX42 | chr17:61894326 | chr17:61833930 | ENST00000578681 | + | 18 | 19 | 284_459 | 704.0 | 939.0 | Domain | Helicase ATP-binding |
Hgene | DDX42 | chr17:61894326 | chr17:61833930 | ENST00000578681 | + | 18 | 19 | 487_632 | 704.0 | 939.0 | Domain | Helicase C-terminal |
Hgene | DDX42 | chr17:61894326 | chr17:61833930 | ENST00000583590 | + | 18 | 19 | 284_459 | 704.0 | 939.0 | Domain | Helicase ATP-binding |
Hgene | DDX42 | chr17:61894326 | chr17:61833930 | ENST00000583590 | + | 18 | 19 | 487_632 | 704.0 | 939.0 | Domain | Helicase C-terminal |
Hgene | DDX42 | chr17:61894326 | chr17:61833930 | ENST00000359353 | + | 16 | 17 | 253_281 | 585.0 | 820.0 | Motif | Note=Q motif |
Hgene | DDX42 | chr17:61894326 | chr17:61833930 | ENST00000359353 | + | 16 | 17 | 407_410 | 585.0 | 820.0 | Motif | Note=DEAD box |
Hgene | DDX42 | chr17:61894326 | chr17:61833930 | ENST00000389924 | + | 17 | 18 | 253_281 | 704.0 | 939.0 | Motif | Note=Q motif |
Hgene | DDX42 | chr17:61894326 | chr17:61833930 | ENST00000389924 | + | 17 | 18 | 407_410 | 704.0 | 939.0 | Motif | Note=DEAD box |
Hgene | DDX42 | chr17:61894326 | chr17:61833930 | ENST00000457800 | + | 16 | 17 | 253_281 | 704.0 | 939.0 | Motif | Note=Q motif |
Hgene | DDX42 | chr17:61894326 | chr17:61833930 | ENST00000457800 | + | 16 | 17 | 407_410 | 704.0 | 939.0 | Motif | Note=DEAD box |
Hgene | DDX42 | chr17:61894326 | chr17:61833930 | ENST00000578681 | + | 18 | 19 | 253_281 | 704.0 | 939.0 | Motif | Note=Q motif |
Hgene | DDX42 | chr17:61894326 | chr17:61833930 | ENST00000578681 | + | 18 | 19 | 407_410 | 704.0 | 939.0 | Motif | Note=DEAD box |
Hgene | DDX42 | chr17:61894326 | chr17:61833930 | ENST00000583590 | + | 18 | 19 | 253_281 | 704.0 | 939.0 | Motif | Note=Q motif |
Hgene | DDX42 | chr17:61894326 | chr17:61833930 | ENST00000583590 | + | 18 | 19 | 407_410 | 704.0 | 939.0 | Motif | Note=DEAD box |
Hgene | DDX42 | chr17:61894326 | chr17:61833930 | ENST00000359353 | + | 16 | 17 | 297_304 | 585.0 | 820.0 | Nucleotide binding | ATP |
Hgene | DDX42 | chr17:61894326 | chr17:61833930 | ENST00000389924 | + | 17 | 18 | 297_304 | 704.0 | 939.0 | Nucleotide binding | ATP |
Hgene | DDX42 | chr17:61894326 | chr17:61833930 | ENST00000457800 | + | 16 | 17 | 297_304 | 704.0 | 939.0 | Nucleotide binding | ATP |
Hgene | DDX42 | chr17:61894326 | chr17:61833930 | ENST00000578681 | + | 18 | 19 | 297_304 | 704.0 | 939.0 | Nucleotide binding | ATP |
Hgene | DDX42 | chr17:61894326 | chr17:61833930 | ENST00000583590 | + | 18 | 19 | 297_304 | 704.0 | 939.0 | Nucleotide binding | ATP |
Tgene | CCDC47 | chr17:61894326 | chr17:61833930 | ENST00000225726 | 5 | 13 | 450_483 | 245.0 | 484.0 | Coiled coil | Ontology_term=ECO:0000255 | |
Tgene | CCDC47 | chr17:61894326 | chr17:61833930 | ENST00000403162 | 6 | 14 | 450_483 | 245.0 | 484.0 | Coiled coil | Ontology_term=ECO:0000255 | |
Tgene | CCDC47 | chr17:61894326 | chr17:61833930 | ENST00000582252 | 5 | 12 | 450_483 | 245.0 | 481.0 | Coiled coil | Ontology_term=ECO:0000255 |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | DDX42 | chr17:61894326 | chr17:61833930 | ENST00000359353 | + | 16 | 17 | 654_659 | 585.0 | 820.0 | Compositional bias | Note=Poly-Gly |
Hgene | DDX42 | chr17:61894326 | chr17:61833930 | ENST00000359353 | + | 16 | 17 | 762_883 | 585.0 | 820.0 | Compositional bias | Note=Gly-rich |
Hgene | DDX42 | chr17:61894326 | chr17:61833930 | ENST00000359353 | + | 16 | 17 | 819_871 | 585.0 | 820.0 | Compositional bias | Note=His-rich |
Hgene | DDX42 | chr17:61894326 | chr17:61833930 | ENST00000389924 | + | 17 | 18 | 762_883 | 704.0 | 939.0 | Compositional bias | Note=Gly-rich |
Hgene | DDX42 | chr17:61894326 | chr17:61833930 | ENST00000389924 | + | 17 | 18 | 819_871 | 704.0 | 939.0 | Compositional bias | Note=His-rich |
Hgene | DDX42 | chr17:61894326 | chr17:61833930 | ENST00000457800 | + | 16 | 17 | 762_883 | 704.0 | 939.0 | Compositional bias | Note=Gly-rich |
Hgene | DDX42 | chr17:61894326 | chr17:61833930 | ENST00000457800 | + | 16 | 17 | 819_871 | 704.0 | 939.0 | Compositional bias | Note=His-rich |
Hgene | DDX42 | chr17:61894326 | chr17:61833930 | ENST00000578681 | + | 18 | 19 | 762_883 | 704.0 | 939.0 | Compositional bias | Note=Gly-rich |
Hgene | DDX42 | chr17:61894326 | chr17:61833930 | ENST00000578681 | + | 18 | 19 | 819_871 | 704.0 | 939.0 | Compositional bias | Note=His-rich |
Hgene | DDX42 | chr17:61894326 | chr17:61833930 | ENST00000583590 | + | 18 | 19 | 762_883 | 704.0 | 939.0 | Compositional bias | Note=Gly-rich |
Hgene | DDX42 | chr17:61894326 | chr17:61833930 | ENST00000583590 | + | 18 | 19 | 819_871 | 704.0 | 939.0 | Compositional bias | Note=His-rich |
Hgene | DDX42 | chr17:61894326 | chr17:61833930 | ENST00000359353 | + | 16 | 17 | 487_632 | 585.0 | 820.0 | Domain | Helicase C-terminal |
Tgene | CCDC47 | chr17:61894326 | chr17:61833930 | ENST00000225726 | 5 | 13 | 136_155 | 245.0 | 484.0 | Transmembrane | Helical | |
Tgene | CCDC47 | chr17:61894326 | chr17:61833930 | ENST00000403162 | 6 | 14 | 136_155 | 245.0 | 484.0 | Transmembrane | Helical | |
Tgene | CCDC47 | chr17:61894326 | chr17:61833930 | ENST00000582252 | 5 | 12 | 136_155 | 245.0 | 481.0 | Transmembrane | Helical |
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Fusion Gene Sequence for DDX42-CCDC47 |
For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones. |
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Fusion Gene PPI Analysis for DDX42-CCDC47 |
Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in |
Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
Hgene | Hgene's interactors | Tgene | Tgene's interactors |
- Retained PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
- Lost PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
- Retained PPIs, but lost function due to frame-shift fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Related Drugs for DDX42-CCDC47 |
Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.8 2021-05-08) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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Related Diseases for DDX42-CCDC47 |
Diseases associated with fusion partners. (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Tgene | CCDC47 | C0343073 | Wooly hair | 1 | GENOMICS_ENGLAND |
Tgene | CCDC47 | C0557874 | Global developmental delay | 1 | GENOMICS_ENGLAND |
Tgene | CCDC47 | C3714756 | Intellectual Disability | 1 | GENOMICS_ENGLAND |
Tgene | CCDC47 | C4021780 | Abnormality of the liver | 1 | GENOMICS_ENGLAND |
Tgene | CCDC47 | C4748898 | TRICHOHEPATONEURODEVELOPMENTAL SYNDROME | 1 | GENOMICS_ENGLAND |