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 | Fusion Gene Summary |
| Fusion Gene ORF analysis |
| Fusion Genomic Features |
| Fusion Protein Features |
| Fusion Gene Sequence |
| Fusion Gene PPI analysis |
| Related Drugs |
| Related Diseases |
Fusion gene:EMD-TAF8 (FusionGDB2 ID:26367) |
Fusion Gene Summary for EMD-TAF8 |
 Fusion gene summary |
| Fusion gene information | Fusion gene name: EMD-TAF8 | Fusion gene ID: 26367 | Hgene | Tgene | Gene symbol | EMD | TAF8 | Gene ID | 2010 | 129685 |
| Gene name | emerin | TATA-box binding protein associated factor 8 | |
| Synonyms | EDMD|LEMD5|STA | II|TAF|TAF(II)43|TAFII-43|TAFII43|TBN | |
| Cytomap | Xq28 | 6p21.1 | |
| Type of gene | protein-coding | protein-coding | |
| Description | emerinLEM domain containing 5 | transcription initiation factor TFIID subunit 8TAF8 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 43kDaTATA box binding protein (TBP)-associated factor, RNA polymerase II, A, 45/50kDaTBP-associated factor 43 kDaTBP-associated fa | |
| Modification date | 20200315 | 20200313 | |
| UniProtAcc | P50402 | . | |
| Ensembl transtripts involved in fusion gene | ENST00000369842, ENST00000369835, ENST00000492448, | ENST00000372978, ENST00000494547, ENST00000456846, ENST00000372982, ENST00000472818, ENST00000372977, ENST00000482926, ENST00000465926, ENST00000482432, | |
| Fusion gene scores | * DoF score | 3 X 3 X 1=9 | 7 X 7 X 5=245 |
| # samples | 3 | 8 | |
| ** MAII score | log2(3/9*10)=1.73696559416621 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | log2(8/245*10)=-1.61470984411521 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
| Context | PubMed: EMD [Title/Abstract] AND TAF8 [Title/Abstract] AND fusion [Title/Abstract] | ||
| Most frequent breakpoint | EMD(153608107)-TAF8(42025163), # samples:1 | ||
| Anticipated loss of major functional domain due to fusion event. | EMD-TAF8 seems lost the major protein functional domain in Hgene partner, which is a essential gene due to the frame-shifted ORF. EMD-TAF8 seems lost the major protein functional domain in Tgene partner, which is a essential gene due to the frame-shifted ORF. EMD-TAF8 seems lost the major protein functional domain in Tgene partner, which is a epigenetic factor due to the frame-shifted ORF. | ||
| * DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
| Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Partner | Gene | GO ID | GO term | PubMed ID |
| Tgene | TAF8 | GO:0045598 | regulation of fat cell differentiation | 14580349 |
| Tgene | TAF8 | GO:0045893 | positive regulation of transcription, DNA-templated | 14580349 |
| Tgene | TAF8 | GO:0051457 | maintenance of protein location in nucleus | 15870280 |
| Fusion gene breakpoints across EMD (5'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
| Fusion gene breakpoints across TAF8 (3'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
| Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| Source | Disease | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| ChiTaRS5.0 | N/A | BP873617 | EMD | chrX | 153608107 | + | TAF8 | chr6 | 42025163 | + |
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Fusion Gene ORF analysis for EMD-TAF8 |
| Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| Frame-shift | ENST00000369842 | ENST00000372978 | EMD | chrX | 153608107 | + | TAF8 | chr6 | 42025163 | + |
| In-frame | ENST00000369842 | ENST00000494547 | EMD | chrX | 153608107 | + | TAF8 | chr6 | 42025163 | + |
| In-frame | ENST00000369842 | ENST00000456846 | EMD | chrX | 153608107 | + | TAF8 | chr6 | 42025163 | + |
| In-frame | ENST00000369842 | ENST00000372982 | EMD | chrX | 153608107 | + | TAF8 | chr6 | 42025163 | + |
| 5CDS-intron | ENST00000369842 | ENST00000472818 | EMD | chrX | 153608107 | + | TAF8 | chr6 | 42025163 | + |
| 5CDS-intron | ENST00000369842 | ENST00000372977 | EMD | chrX | 153608107 | + | TAF8 | chr6 | 42025163 | + |
| 5CDS-3UTR | ENST00000369842 | ENST00000482926 | EMD | chrX | 153608107 | + | TAF8 | chr6 | 42025163 | + |
| 5CDS-3UTR | ENST00000369842 | ENST00000465926 | EMD | chrX | 153608107 | + | TAF8 | chr6 | 42025163 | + |
| 5CDS-intron | ENST00000369842 | ENST00000482432 | EMD | chrX | 153608107 | + | TAF8 | chr6 | 42025163 | + |
| intron-3CDS | ENST00000369835 | ENST00000372978 | EMD | chrX | 153608107 | + | TAF8 | chr6 | 42025163 | + |
| intron-3CDS | ENST00000369835 | ENST00000494547 | EMD | chrX | 153608107 | + | TAF8 | chr6 | 42025163 | + |
| intron-3CDS | ENST00000369835 | ENST00000456846 | EMD | chrX | 153608107 | + | TAF8 | chr6 | 42025163 | + |
| intron-3CDS | ENST00000369835 | ENST00000372982 | EMD | chrX | 153608107 | + | TAF8 | chr6 | 42025163 | + |
| intron-intron | ENST00000369835 | ENST00000472818 | EMD | chrX | 153608107 | + | TAF8 | chr6 | 42025163 | + |
| intron-intron | ENST00000369835 | ENST00000372977 | EMD | chrX | 153608107 | + | TAF8 | chr6 | 42025163 | + |
| intron-3UTR | ENST00000369835 | ENST00000482926 | EMD | chrX | 153608107 | + | TAF8 | chr6 | 42025163 | + |
| intron-3UTR | ENST00000369835 | ENST00000465926 | EMD | chrX | 153608107 | + | TAF8 | chr6 | 42025163 | + |
| intron-intron | ENST00000369835 | ENST00000482432 | EMD | chrX | 153608107 | + | TAF8 | chr6 | 42025163 | + |
| 3UTR-3CDS | ENST00000492448 | ENST00000372978 | EMD | chrX | 153608107 | + | TAF8 | chr6 | 42025163 | + |
| 3UTR-3CDS | ENST00000492448 | ENST00000494547 | EMD | chrX | 153608107 | + | TAF8 | chr6 | 42025163 | + |
| 3UTR-3CDS | ENST00000492448 | ENST00000456846 | EMD | chrX | 153608107 | + | TAF8 | chr6 | 42025163 | + |
| 3UTR-3CDS | ENST00000492448 | ENST00000372982 | EMD | chrX | 153608107 | + | TAF8 | chr6 | 42025163 | + |
| 3UTR-intron | ENST00000492448 | ENST00000472818 | EMD | chrX | 153608107 | + | TAF8 | chr6 | 42025163 | + |
| 3UTR-intron | ENST00000492448 | ENST00000372977 | EMD | chrX | 153608107 | + | TAF8 | chr6 | 42025163 | + |
| 3UTR-3UTR | ENST00000492448 | ENST00000482926 | EMD | chrX | 153608107 | + | TAF8 | chr6 | 42025163 | + |
| 3UTR-3UTR | ENST00000492448 | ENST00000465926 | EMD | chrX | 153608107 | + | TAF8 | chr6 | 42025163 | + |
| 3UTR-intron | ENST00000492448 | ENST00000482432 | EMD | chrX | 153608107 | + | TAF8 | chr6 | 42025163 | + |
| ORFfinder result based on the fusion transcript sequence of in-frame fusion genes. |
| Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | Seq length (transcript) | BP loci (transcript) | Predicted start (transcript) | Predicted stop (transcript) | Seq length (amino acids) |
| ENST00000369842 | EMD | chrX | 153608107 | + | ENST00000494547 | TAF8 | chr6 | 42025163 | + | 2398 | 417 | 538 | 1032 | 164 |
| ENST00000369842 | EMD | chrX | 153608107 | + | ENST00000456846 | TAF8 | chr6 | 42025163 | + | 1289 | 417 | 993 | 523 | 156 |
| ENST00000369842 | EMD | chrX | 153608107 | + | ENST00000372982 | TAF8 | chr6 | 42025163 | + | 1801 | 417 | 538 | 1032 | 164 |
| DeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated. |
| Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | No-coding score | Coding score |
| ENST00000369842 | ENST00000494547 | EMD | chrX | 153608107 | + | TAF8 | chr6 | 42025163 | + | 0.16887864 | 0.8311214 |
| ENST00000369842 | ENST00000456846 | EMD | chrX | 153608107 | + | TAF8 | chr6 | 42025163 | + | 0.010227439 | 0.9897726 |
| ENST00000369842 | ENST00000372982 | EMD | chrX | 153608107 | + | TAF8 | chr6 | 42025163 | + | 0.24301675 | 0.7569832 |
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Fusion Genomic Features for EMD-TAF8 |
| FusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints. |
| Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | 1-p | p (fusion gene breakpoint) |
| Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page. |
| Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page. |
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Fusion Protein Features for EMD-TAF8 |
| Go to FGviewer for the breakpoints of chrX:153608107-chr6:42025163 - FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels. |
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| Main function of each fusion partner protein. (from UniProt) |
| Hgene | Tgene |
| EMD | . |
| FUNCTION: Stabilizes and promotes the formation of a nuclear actin cortical network. Stimulates actin polymerization in vitro by binding and stabilizing the pointed end of growing filaments. Inhibits beta-catenin activity by preventing its accumulation in the nucleus. Acts by influencing the nuclear accumulation of beta-catenin through a CRM1-dependent export pathway. Links centrosomes to the nuclear envelope via a microtubule association. EMD and BAF are cooperative cofactors of HIV-1 infection. Association of EMD with the viral DNA requires the presence of BAF and viral integrase. The association of viral DNA with chromatin requires the presence of BAF and EMD. Required for proper localization of non-farnesylated prelamin-A/C. {ECO:0000269|PubMed:15328537, ECO:0000269|PubMed:16680152, ECO:0000269|PubMed:16858403, ECO:0000269|PubMed:17785515, ECO:0000269|PubMed:19323649}. | FUNCTION: Might normally function as a transcriptional repressor. EWS-fusion-proteins (EFPS) may play a role in the tumorigenic process. They may disturb gene expression by mimicking, or interfering with the normal function of CTD-POLII within the transcription initiation complex. They may also contribute to an aberrant activation of the fusion protein target genes. |
| Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at * Minus value of BPloci means that the break pointn is located before the CDS. |
| - In-frame and retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| Tgene | TAF8 | chrX:153608107 | chr6:42025163 | ENST00000372977 | 0 | 9 | 35_102 | 0 | 311.0 | Domain | Note=Histone-fold | |
| Tgene | TAF8 | chrX:153608107 | chr6:42025163 | ENST00000372982 | 0 | 10 | 35_102 | 0 | 565.0 | Domain | Note=Histone-fold | |
| Tgene | TAF8 | chrX:153608107 | chr6:42025163 | ENST00000456846 | 0 | 9 | 35_102 | 0 | 312.0 | Domain | Note=Histone-fold | |
| Tgene | TAF8 | chrX:153608107 | chr6:42025163 | ENST00000494547 | 0 | 10 | 35_102 | 0 | 764.0 | Domain | Note=Histone-fold | |
| Tgene | TAF8 | chrX:153608107 | chr6:42025163 | ENST00000372977 | 0 | 9 | 294_307 | 0 | 311.0 | Motif | Nuclear localization signal | |
| Tgene | TAF8 | chrX:153608107 | chr6:42025163 | ENST00000372982 | 0 | 10 | 294_307 | 0 | 565.0 | Motif | Nuclear localization signal | |
| Tgene | TAF8 | chrX:153608107 | chr6:42025163 | ENST00000456846 | 0 | 9 | 294_307 | 0 | 312.0 | Motif | Nuclear localization signal | |
| Tgene | TAF8 | chrX:153608107 | chr6:42025163 | ENST00000494547 | 0 | 10 | 294_307 | 0 | 764.0 | Motif | Nuclear localization signal |
| - In-frame and not-retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| Hgene | EMD | chrX:153608107 | chr6:42025163 | ENST00000369842 | + | 1 | 6 | 192_199 | 0 | 255.0 | Compositional bias | Note=Poly-Ser |
| Hgene | EMD | chrX:153608107 | chr6:42025163 | ENST00000369842 | + | 1 | 6 | 1_45 | 0 | 255.0 | Domain | LEM |
| Hgene | EMD | chrX:153608107 | chr6:42025163 | ENST00000369842 | + | 1 | 6 | 223_243 | 0 | 255.0 | Transmembrane | Helical |
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Fusion Gene Sequence for EMD-TAF8 |
| For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones. |
| >In-frame_ENST00000369842_ENST00000494547_BP873617_EMD_chrX_153608107_+_TAF8_chr6_42025163_length(transcript)=2398nt_BP=417nt GACGTTTGGGCTCGCGGCCCCAGCCTCCCAGCTCTCAGGGCACGGCCGGTCTGTGCCGGCTGCTCCCGCGGTTAGGTCCCGCCCCGCGCA GCGCGCGCAGCCTGCGGAGCCAGCGGCCGTGACGCGACAACGATTCGGCTGTGACGCGACAACGATTCGGCTGTGACGCGAGCGCGGCCG CTCCCGATGCGCTCGTGCCGCCCCCGCCGTGCTCCTCGGCAGCCGTTGCTCGGCCGGTTTTGGTAGGCCCGGGCCGCCGCCAGGCCTCCG CCTGAGCCCGCACCCGCCATGGACAACTACGCAGATCTTTCGGATACCGAGCTGACCACCTTGCTGCGCCGGTACAACATCCCGCACGGG CCTGTAGTAGGCTCTCGCCCCCCAGCTCGTCCGCCGCCTCCTCTTATAGCTTCTCTGCACTGCAGGGCAGAACCGACCCCACCCGCCGCA CATCCCCAGCCATTTTCCTGAGTTCCCTGATCCCCACACCTACATCAAAACTCCGACGTACCGTGAGCCCGTGTCAGACTACCAGGTCCT GCGGGAGAAGGCTGCATCCCAGAGGCGCGATGTGGAGCGGGCACTTACCCGTTTCATGGCCAAGACAGGCGAGACTCAGAGTCTTTTCAA AGATGACGTCAGCACATTTCCATTGATTGCTGCCAGACCTTTCACCATCCCCTACCTGACAGCTCTTCTTCCGTCTGAACTGGAGATGCA ACAAATGGAAGAGACAGATTCCTCGGAGCAGGATGAACAGACAGACACAGAGAACCTTGCTCTTCATATCAGCATGATAGAGTCTCGCTC CGTCACCCAGGCTGGAGTGCAGTGGCAAGATCTTGGCTCACTGCAACCTCCGCCTCCTGGGTTCAAGCGATTCTCCAGCCTCAGCCTCCT GAGTAGCTGGAATTACAGGAGGATTCTGGAGCCGAGAAGGAGAACACCTCTGTCCTGCAGCAGAACCCCTCCTTGTCGGGTAGCCGGAAT GGGGAGGAGAACATCATCGATAACCCTTATCTGCGGCCGGTGAAGAAGCCCAAGATCCGCAGGAAGAAGTCCCTCTCCTGAGCTGAGAAG GAAACCTGGCTTGTACAGGGGCGCAGATTCCACCCTCCCGGGGAGTTAAAGCCACTCAAGGGAAGAAGAGGGTGACCTCCTCATGGCCAA GCCGAGGCTGCAGGGTGTGATCGGACATGATTTTCATGGCAAACCGTCTTATTAAGATGACCTATTTTCACTGGATGTTTGGGTTGAGGA AGATATGAACAGAATAATGAGAATTTTTTTTTTTATTTTGAGATGGAGTCTTACTCTATCACCCAGGCTGGAATGCAGTGGTGTGATCTC AGCTCACTGCAGTCTCAGCAACCCTGGGTCCAAGTGATTCTCCTGCCTTGGCCTCCCGAGTAGCTGGGACTAGAGGCAAGCGCCACCATG CTGGCTAATTTTTGTATTTTGAGTAGAGATAGGGTTTCGCCATGTTGGCCAGGCTGGTCTTGAACTCCTGACCTCAAGTGATCCACCCGC ATTGGCCTCCCAAAGAGTTGCGATTACAGGTGTGAGCCACCACGCCCAGCTAATTTTTGTATTTTTAATAGAGATAAGGTTTCGCCATGT TGGCCAGGCTGGTCTTGAACTCCTGACCTCAAGTGATAACCCGCCTCGGCCTCCCAAAGTGCTGAGATTACAGGCGTGAGCCACCGCACC CCACCAGAGACTTTCTTAATCAATCAGGCTATGTGGTGGGGCATAGCAGCAGCCAGTGACTTCGTTCATTATCACAGGATTTGATTCCTT TGAAACTCAAGAGACCAGGGAAAGTGACAGGAAGGAAAGGGCTCTTTGCTGCTGTGCTTATTACAAGGAAGACTGTTTGTCCAGCGTGTA TTTCAGGATATCTGGATCCCTTTTATTGACTCACAATTTGTGGCACCACTTTCTCATCCCAGAACTTCATTCTTATTTCTCTCCTCATCT GGCCTCCCAAGTGCTCCGTTGAGCTGATGAAAAGTTCTTTGTACTCCCTCAACGTGTCGGAAACAGGAGGCCACACAGCACAGCTTTGTT TGGGGTGGGCAGGAGTCAGGAGTCTTGAGCAGATGCATCACTGTGAAGAAGAACGACATGTCGGGGCTGCACCTGTCCTCCCGTCGGCAT TTGACGAAAGCTCCCTGAAGCGGGGCAGCACTCTCCTCCTGAGAGATTTACCATTTATTGCCCCTGTGAGGAATGTGTGCTTGGGAACTG CCAAGTCTTACCCCTTCTGGAAGAAGAGGTTTTCTCTGACAAGAGCCTAGAGCGTCGGCTCTATTATGCTGGGACTTGACAGAGGAGCCA >In-frame_ENST00000369842_ENST00000494547_BP873617_EMD_chrX_153608107_+_TAF8_chr6_42025163_length(amino acids)=164AA_start in transcript=538_stop in transcript=1032 MREKAASQRRDVERALTRFMAKTGETQSLFKDDVSTFPLIAARPFTIPYLTALLPSELEMQQMEETDSSEQDEQTDTENLALHISMIESR -------------------------------------------------------------- >In-frame_ENST00000369842_ENST00000456846_BP873617_EMD_chrX_153608107_+_TAF8_chr6_42025163_length(transcript)=1289nt_BP=417nt GACGTTTGGGCTCGCGGCCCCAGCCTCCCAGCTCTCAGGGCACGGCCGGTCTGTGCCGGCTGCTCCCGCGGTTAGGTCCCGCCCCGCGCA GCGCGCGCAGCCTGCGGAGCCAGCGGCCGTGACGCGACAACGATTCGGCTGTGACGCGACAACGATTCGGCTGTGACGCGAGCGCGGCCG CTCCCGATGCGCTCGTGCCGCCCCCGCCGTGCTCCTCGGCAGCCGTTGCTCGGCCGGTTTTGGTAGGCCCGGGCCGCCGCCAGGCCTCCG CCTGAGCCCGCACCCGCCATGGACAACTACGCAGATCTTTCGGATACCGAGCTGACCACCTTGCTGCGCCGGTACAACATCCCGCACGGG CCTGTAGTAGGCTCTCGCCCCCCAGCTCGTCCGCCGCCTCCTCTTATAGCTTCTCTGCACTGCAGGGCAGAACCGACCCCACCCGCCGCA CATCCCCAGCCATTTTCCTGAGTTCCCTGATCCCCACACCTACATCAAAACTCCGACGTACCGTGAGCCCGTGTCAGACTACCAGGTCCT GCGGGAGAAGGCTGCATCCCAGAGGCGCGATGTGGAGCGGGCACTTACCCGTTTCATGGCCAAGACAGGCGAGACTCAGAGTCTTTTCAA AGATGACGTCAGCACATTTCCATTGATTGCTGCCAGACCTTTCACCATCCCCTACCTGACAGCTCTTCTTCCGTCTGAACTGGAGATGCA ACAAATGGAAGAGACAGATTCCTCGGAGCAGGATGAACAGACAGACACAGAGAACCTTGCTCTTCATATCAGCATGGAGGATTCTGGAGC CGAGAAGGAGAACACCTCTGTCCTGCAGCAGAACCCCTCCTTGTCGGGTAGCCGGAATGGGGAGGAGAACATCATCGATAACCCTTATCT GCGGCCGGTGAAGAAGCCCAAGATCCGCAGGAAGAAGCCAGATACATTCTAGAGAATTGTGAGACTTTGCCCTAAGCTGCCAAGTGCTCC CCAAGGAGATCGGTCACCAGGAGAGCAGCCACAAAGGTCAAGAAAGACACACACGGAAGCAAACCCAGGCTCTGTGCTCCTTCCAGCCCT TGCTGGTGCAGATGCTACCCCACAAGCTTGTCAGATCGCCCAGGTGACGGGCCAGGCGCAGCCATCGGGAAGGTCATTCAGCCAACCCAG AGGATGTAGACCCTGTCCTCAAGAAGTGCAGGGCGAGTTCTGCCGTGCCCTCTGAAATACTCTCCCTCCTCTCAGAGCCCTCCCTCGAGA >In-frame_ENST00000369842_ENST00000456846_BP873617_EMD_chrX_153608107_+_TAF8_chr6_42025163_length(amino acids)=156AA_start in transcript=993_stop in transcript=523 MGSTWQLRAKSHNSLECIWLLPADLGLLHRPQIRVIDDVLLPIPATRQGGVLLQDRGVLLLGSRILHADMKSKVLCVCLFILLRGICLFH -------------------------------------------------------------- >In-frame_ENST00000369842_ENST00000372982_BP873617_EMD_chrX_153608107_+_TAF8_chr6_42025163_length(transcript)=1801nt_BP=417nt GACGTTTGGGCTCGCGGCCCCAGCCTCCCAGCTCTCAGGGCACGGCCGGTCTGTGCCGGCTGCTCCCGCGGTTAGGTCCCGCCCCGCGCA GCGCGCGCAGCCTGCGGAGCCAGCGGCCGTGACGCGACAACGATTCGGCTGTGACGCGACAACGATTCGGCTGTGACGCGAGCGCGGCCG CTCCCGATGCGCTCGTGCCGCCCCCGCCGTGCTCCTCGGCAGCCGTTGCTCGGCCGGTTTTGGTAGGCCCGGGCCGCCGCCAGGCCTCCG CCTGAGCCCGCACCCGCCATGGACAACTACGCAGATCTTTCGGATACCGAGCTGACCACCTTGCTGCGCCGGTACAACATCCCGCACGGG CCTGTAGTAGGCTCTCGCCCCCCAGCTCGTCCGCCGCCTCCTCTTATAGCTTCTCTGCACTGCAGGGCAGAACCGACCCCACCCGCCGCA CATCCCCAGCCATTTTCCTGAGTTCCCTGATCCCCACACCTACATCAAAACTCCGACGTACCGTGAGCCCGTGTCAGACTACCAGGTCCT GCGGGAGAAGGCTGCATCCCAGAGGCGCGATGTGGAGCGGGCACTTACCCGTTTCATGGCCAAGACAGGCGAGACTCAGAGTCTTTTCAA AGATGACGTCAGCACATTTCCATTGATTGCTGCCAGACCTTTCACCATCCCCTACCTGACAGCTCTTCTTCCGTCTGAACTGGAGATGCA ACAAATGGAAGAGACAGATTCCTCGGAGCAGGATGAACAGACAGACACAGAGAACCTTGCTCTTCATATCAGCATGATAGAGTCTCGCTC CGTCACCCAGGCTGGAGTGCAGTGGCAAGATCTTGGCTCACTGCAACCTCCGCCTCCTGGGTTCAAGCGATTCTCCAGCCTCAGCCTCCT GAGTAGCTGGAATTACAGGAGGATTCTGGAGCCGAGAAGGAGAACACCTCTGTCCTGCAGCAGAACCCCTCCTTGTCGGGTAGCCGGAAT GGGGAGGAGAACATCATCGATAACCCTTATCTGCGGCCGGTGAAGAAGCCCAAGATCCGCAGGAAGAAGCCAGATACATTCTAGAGAATT GTGAGACTTTGCCCTAAGCTGCCAAGTGCTCCCCAAGGAGATCGGTCACCAGGAGAGCAGCCACAAAGGTCAAGAAAGACACACACGGAA GCAAACCCAGGCTCTGTGCTCCTTCCAGCCCTTGCTGGTGCAGATGCTACCCCACAAGCTTGTCAGATCGCCCAGGTGACGGGCCAGGCG CAGCCATCGGGAAGGTCATTCAGCCAACCCAGAGGATGTAGACCCTGTCCTCAAGAAGTGCAGGGCGAGTTCTGCCGTGCCCTCTGAAAT ACTCTCCCTCCTCTCAGAGCCCTCCCTCGAGAGCCTGAGTGCACCATGTCTTGTGGCCTCGCCTGAAGCCTTCCTCTGGCTTCACAGAAT GCTCTGGAACTCTGGGGTCTGGTCAGGGAGTGTGTCCTCAGCTTGTCTGGAGGAGGCCTGCATCCCTCCTGAGCTCTTGGAGGTGCCCAG GAACCCTGCTTCTCCTCACAGGGCCTGGCCATATAGCCAGCTCCAACCCAAAGCCCTGCACAGTGCCTCACCCACTCCCTTCTCCTGGTC TCTCCTCAAAAGAATTTTACATGATTTTAAAATAATAATAGCTTTCATTTACATAGTGCTTACATTTATATAGCACTTACTATGTGCGAT GTACTAATTTAAGTACTTTATATTAACTCATATAATAAATGGACACAACACAAAACTCAAAAGGTACAAAAGAATAAAACAGTTAAAAAC >In-frame_ENST00000369842_ENST00000372982_BP873617_EMD_chrX_153608107_+_TAF8_chr6_42025163_length(amino acids)=164AA_start in transcript=538_stop in transcript=1032 MREKAASQRRDVERALTRFMAKTGETQSLFKDDVSTFPLIAARPFTIPYLTALLPSELEMQQMEETDSSEQDEQTDTENLALHISMIESR -------------------------------------------------------------- |
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Fusion Gene PPI Analysis for EMD-TAF8 |
| Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in |
| Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
| Hgene | Hgene's interactors | Tgene | Tgene's interactors |
| - Retained PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
| - Lost PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
| Hgene | EMD | chrX:153608107 | chr6:42025163 | ENST00000369842 | + | 1 | 6 | 168_186 | 0 | 255.0 | CTNNB1 |
| Hgene | EMD | chrX:153608107 | chr6:42025163 | ENST00000369842 | + | 1 | 6 | 46_222 | 0 | 255.0 | F-actin |
| - Retained PPIs, but lost function due to frame-shift fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Related Drugs for EMD-TAF8 |
| Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.8 2021-05-08) |
| Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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Related Diseases for EMD-TAF8 |
| Diseases associated with fusion partners. (DisGeNet 4.0) |
| Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
| Hgene | EMD | C0751337 | X-Linked Emery-Dreifuss Muscular Dystrophy | 6 | CTD_human;GENOMICS_ENGLAND;ORPHANET;UNIPROT |
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