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 | Fusion Gene Summary |
| Fusion Gene ORF analysis |
| Fusion Genomic Features |
| Fusion Protein Features |
| Fusion Gene Sequence |
| Fusion Gene PPI analysis |
| Related Drugs |
| Related Diseases |
Fusion gene:FAM120A-TRIM2 (FusionGDB2 ID:28323) |
Fusion Gene Summary for FAM120A-TRIM2 |
 Fusion gene summary |
| Fusion gene information | Fusion gene name: FAM120A-TRIM2 | Fusion gene ID: 28323 | Hgene | Tgene | Gene symbol | FAM120A | TRIM2 | Gene ID | 23196 | 23321 |
| Gene name | family with sequence similarity 120A | tripartite motif containing 2 | |
| Synonyms | C9orf10|HBVPTPAP|OSSA | CMT2R|RNF86 | |
| Cytomap | 9q22.31 | 4q31.3 | |
| Type of gene | protein-coding | protein-coding | |
| Description | constitutive coactivator of PPAR-gamma-like protein 1oxidative stess-associated Src activatoroxidative stress-associated Src activator | tripartite motif-containing protein 2E3 ubiquitin-protein ligase TRIM2RING finger protein 86RING-type E3 ubiquitin transferase TRIM2tripartite motif protein TRIM2 | |
| Modification date | 20200320 | 20200315 | |
| UniProtAcc | Q9NZB2 | P14373 | |
| Ensembl transtripts involved in fusion gene | ENST00000277165, ENST00000375389, ENST00000340893, ENST00000333936, ENST00000475933, | ENST00000437508, ENST00000494872, ENST00000338700, | |
| Fusion gene scores | * DoF score | 10 X 9 X 4=360 | 7 X 7 X 3=147 |
| # samples | 12 | 7 | |
| ** MAII score | log2(12/360*10)=-1.58496250072116 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(7/147*10)=-1.0703893278914 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
| Context | PubMed: FAM120A [Title/Abstract] AND TRIM2 [Title/Abstract] AND fusion [Title/Abstract] | ||
| Most frequent breakpoint | FAM120A(96294570)-TRIM2(154216603), # samples:1 | ||
| Anticipated loss of major functional domain due to fusion event. | FAM120A-TRIM2 seems lost the major protein functional domain in Hgene partner, which is a essential gene due to the frame-shifted ORF. | ||
| * DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
| Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Partner | Gene | GO ID | GO term | PubMed ID |
| Fusion gene breakpoints across FAM120A (5'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
| Fusion gene breakpoints across TRIM2 (3'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
| Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| Source | Disease | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| ChiTaRS5.0 | N/A | BI046155 | FAM120A | chr9 | 96294570 | - | TRIM2 | chr4 | 154216603 | - |
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Fusion Gene ORF analysis for FAM120A-TRIM2 |
| Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| Frame-shift | ENST00000277165 | ENST00000437508 | FAM120A | chr9 | 96294570 | - | TRIM2 | chr4 | 154216603 | - |
| 5CDS-3UTR | ENST00000277165 | ENST00000494872 | FAM120A | chr9 | 96294570 | - | TRIM2 | chr4 | 154216603 | - |
| 5CDS-3UTR | ENST00000277165 | ENST00000338700 | FAM120A | chr9 | 96294570 | - | TRIM2 | chr4 | 154216603 | - |
| intron-3CDS | ENST00000375389 | ENST00000437508 | FAM120A | chr9 | 96294570 | - | TRIM2 | chr4 | 154216603 | - |
| intron-3UTR | ENST00000375389 | ENST00000494872 | FAM120A | chr9 | 96294570 | - | TRIM2 | chr4 | 154216603 | - |
| intron-3UTR | ENST00000375389 | ENST00000338700 | FAM120A | chr9 | 96294570 | - | TRIM2 | chr4 | 154216603 | - |
| Frame-shift | ENST00000340893 | ENST00000437508 | FAM120A | chr9 | 96294570 | - | TRIM2 | chr4 | 154216603 | - |
| 5CDS-3UTR | ENST00000340893 | ENST00000494872 | FAM120A | chr9 | 96294570 | - | TRIM2 | chr4 | 154216603 | - |
| 5CDS-3UTR | ENST00000340893 | ENST00000338700 | FAM120A | chr9 | 96294570 | - | TRIM2 | chr4 | 154216603 | - |
| Frame-shift | ENST00000333936 | ENST00000437508 | FAM120A | chr9 | 96294570 | - | TRIM2 | chr4 | 154216603 | - |
| 5CDS-3UTR | ENST00000333936 | ENST00000494872 | FAM120A | chr9 | 96294570 | - | TRIM2 | chr4 | 154216603 | - |
| 5CDS-3UTR | ENST00000333936 | ENST00000338700 | FAM120A | chr9 | 96294570 | - | TRIM2 | chr4 | 154216603 | - |
| 3UTR-3CDS | ENST00000475933 | ENST00000437508 | FAM120A | chr9 | 96294570 | - | TRIM2 | chr4 | 154216603 | - |
| 3UTR-3UTR | ENST00000475933 | ENST00000494872 | FAM120A | chr9 | 96294570 | - | TRIM2 | chr4 | 154216603 | - |
| 3UTR-3UTR | ENST00000475933 | ENST00000338700 | FAM120A | chr9 | 96294570 | - | TRIM2 | chr4 | 154216603 | - |
| ORFfinder result based on the fusion transcript sequence of in-frame fusion genes. |
| Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | Seq length (transcript) | BP loci (transcript) | Predicted start (transcript) | Predicted stop (transcript) | Seq length (amino acids) |
| DeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated. |
| Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | No-coding score | Coding score |
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Fusion Genomic Features for FAM120A-TRIM2 |
| FusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints. |
| Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | 1-p | p (fusion gene breakpoint) |
| Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page. |
| Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page. |
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Fusion Protein Features for FAM120A-TRIM2 |
| Go to FGviewer for the breakpoints of :-: - FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels. |
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| Main function of each fusion partner protein. (from UniProt) |
| Hgene | Tgene |
| FAM120A | TRIM2 |
| FUNCTION: May participate in mRNA transport in the cytoplasm (By similarity). Critical component of the oxidative stress-induced survival signaling. Activates src family kinases and acts as a scaffolding protein enabling src family kinases to phosphorylate and activate PI3-kinase. Binds RNA and promotes the secretion of IGF-II. May play a pivotal role in the progression of scirrhous-type gastric cancer by supporting cancer cell survival in environments with various oxidative stresses. {ECO:0000250, ECO:0000269|PubMed:19015244}. | FUNCTION: E3 ubiquitin-protein ligase that mediates ubiquitination of PIK3C2B and inhibits its activity; mediates the formation of 'Lys-48'-linked polyubiquitin chains; the function inhibits CD4 T-cell activation. Acts as a regulator of retrograde transport: together with MAGEL2, mediates the formation of 'Lys-63'-linked polyubiquitin chains at 'Lys-220' of WASHC1, leading to promote endosomal F-actin assembly (PubMed:23452853). Has a transcriptional repressor activity by cooperating with EPC1. Induces apoptosis by activating Jun N-terminal kinase and p38 kinase and also increases caspase-3-like activity independently of mitochondrial events. May function in male germ cell development. Has DNA-binding activity and preferentially bound to double-stranded DNA. {ECO:0000269|PubMed:10976108, ECO:0000269|PubMed:12807881, ECO:0000269|PubMed:22128329, ECO:0000269|PubMed:23452853}. |
| Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at * Minus value of BPloci means that the break pointn is located before the CDS. |
| - In-frame and retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| - In-frame and not-retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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Fusion Gene Sequence for FAM120A-TRIM2 |
| For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones. |
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Fusion Gene PPI Analysis for FAM120A-TRIM2 |
| Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in |
| Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
| Hgene | Hgene's interactors | Tgene | Tgene's interactors |
| - Retained PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
| - Lost PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
| - Retained PPIs, but lost function due to frame-shift fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Related Drugs for FAM120A-TRIM2 |
| Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.8 2021-05-08) |
| Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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Related Diseases for FAM120A-TRIM2 |
| Diseases associated with fusion partners. (DisGeNet 4.0) |
| Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
| Tgene | TRIM2 | C3809655 | CHARCOT-MARIE-TOOTH DISEASE, AXONAL, TYPE 2R | 2 | CTD_human;GENOMICS_ENGLAND;ORPHANET;UNIPROT |
| Tgene | TRIM2 | C0029408 | Degenerative polyarthritis | 1 | CTD_human |
| Tgene | TRIM2 | C0086743 | Osteoarthrosis Deformans | 1 | CTD_human |
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