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 | Fusion Gene Summary |
| Fusion Gene ORF analysis |
| Fusion Genomic Features |
| Fusion Protein Features |
| Fusion Gene Sequence |
| Fusion Gene PPI analysis |
| Related Drugs |
| Related Diseases |
Fusion gene:FAM160B1-SHROOM3 (FusionGDB2 ID:28541) |
Fusion Gene Summary for FAM160B1-SHROOM3 |
 Fusion gene summary |
| Fusion gene information | Fusion gene name: FAM160B1-SHROOM3 | Fusion gene ID: 28541 | Hgene | Tgene | Gene symbol | FAM160B1 | SHROOM3 | Gene ID | 57700 | 57619 |
| Gene name | family with sequence similarity 160 member B1 | shroom family member 3 | |
| Synonyms | KIAA1600|bA106M7.3 | APXL3|MSTP013|SHRM|ShrmL | |
| Cytomap | 10q25.3 | 4q21.1 | |
| Type of gene | protein-coding | protein-coding | |
| Description | protein FAM160B1 | protein Shroom3F-actin-binding proteinshroom-related protein | |
| Modification date | 20200313 | 20200313 | |
| UniProtAcc | Q5W0V3 | . | |
| Ensembl transtripts involved in fusion gene | ENST00000369250, ENST00000369248, ENST00000369246, | ENST00000296043, ENST00000473602, | |
| Fusion gene scores | * DoF score | 7 X 5 X 5=175 | 11 X 10 X 6=660 |
| # samples | 7 | 13 | |
| ** MAII score | log2(7/175*10)=-1.32192809488736 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(13/660*10)=-2.34395440121736 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
| Context | PubMed: FAM160B1 [Title/Abstract] AND SHROOM3 [Title/Abstract] AND fusion [Title/Abstract] | ||
| Most frequent breakpoint | FAM160B1(116596005)-SHROOM3(77476762), # samples:3 | ||
| Anticipated loss of major functional domain due to fusion event. | |||
| * DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
| Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Partner | Gene | GO ID | GO term | PubMed ID |
| Fusion gene breakpoints across FAM160B1 (5'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
| Fusion gene breakpoints across SHROOM3 (3'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
| Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| Source | Disease | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| ChimerDB4 | UCEC | TCGA-AP-A3K1-01A | FAM160B1 | chr10 | 116596005 | + | SHROOM3 | chr4 | 77476762 | + |
| ChimerDB4 | UCEC | TCGA-AP-A3K1-01A | FAM160B1 | chr10 | 116596005 | + | SHROOM3 | chr4 | 77476762 | + |
| ChimerDB4 | UCEC | TCGA-AP-A3K1-01A | FAM160B1 | chr10 | 116596005 | - | SHROOM3 | chr4 | 77476762 | + |
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Fusion Gene ORF analysis for FAM160B1-SHROOM3 |
| Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| In-frame | ENST00000369250 | ENST00000296043 | FAM160B1 | chr10 | 116596005 | + | SHROOM3 | chr4 | 77476762 | + |
| 5CDS-intron | ENST00000369250 | ENST00000473602 | FAM160B1 | chr10 | 116596005 | + | SHROOM3 | chr4 | 77476762 | + |
| In-frame | ENST00000369248 | ENST00000296043 | FAM160B1 | chr10 | 116596005 | + | SHROOM3 | chr4 | 77476762 | + |
| 5CDS-intron | ENST00000369248 | ENST00000473602 | FAM160B1 | chr10 | 116596005 | + | SHROOM3 | chr4 | 77476762 | + |
| intron-3CDS | ENST00000369246 | ENST00000296043 | FAM160B1 | chr10 | 116596005 | + | SHROOM3 | chr4 | 77476762 | + |
| intron-intron | ENST00000369246 | ENST00000473602 | FAM160B1 | chr10 | 116596005 | + | SHROOM3 | chr4 | 77476762 | + |
| ORFfinder result based on the fusion transcript sequence of in-frame fusion genes. |
| Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | Seq length (transcript) | BP loci (transcript) | Predicted start (transcript) | Predicted stop (transcript) | Seq length (amino acids) |
| ENST00000369250 | FAM160B1 | chr10 | 116596005 | + | ENST00000296043 | SHROOM3 | chr4 | 77476762 | + | 10756 | 857 | 44 | 6679 | 2211 |
| ENST00000369248 | FAM160B1 | chr10 | 116596005 | + | ENST00000296043 | SHROOM3 | chr4 | 77476762 | + | 10756 | 857 | 44 | 6679 | 2211 |
| DeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated. |
| Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | No-coding score | Coding score |
| ENST00000369250 | ENST00000296043 | FAM160B1 | chr10 | 116596005 | + | SHROOM3 | chr4 | 77476762 | + | 0.001219871 | 0.9987801 |
| ENST00000369248 | ENST00000296043 | FAM160B1 | chr10 | 116596005 | + | SHROOM3 | chr4 | 77476762 | + | 0.001219871 | 0.9987801 |
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Fusion Genomic Features for FAM160B1-SHROOM3 |
| FusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints. |
| Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | 1-p | p (fusion gene breakpoint) |
| FAM160B1 | chr10 | 116596005 | + | SHROOM3 | chr4 | 77476761 | + | 5.89E-07 | 0.9999994 |
| FAM160B1 | chr10 | 116596005 | + | SHROOM3 | chr4 | 77476761 | + | 5.89E-07 | 0.9999994 |
| Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page. |
| Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page. |
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Fusion Protein Features for FAM160B1-SHROOM3 |
| Go to FGviewer for the breakpoints of chr10:116596005-chr4:77476762 - FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels. |
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| Main function of each fusion partner protein. (from UniProt) |
| Hgene | Tgene |
| FAM160B1 | . |
| FUNCTION: Might normally function as a transcriptional repressor. EWS-fusion-proteins (EFPS) may play a role in the tumorigenic process. They may disturb gene expression by mimicking, or interfering with the normal function of CTD-POLII within the transcription initiation complex. They may also contribute to an aberrant activation of the fusion protein target genes. |
| Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at * Minus value of BPloci means that the break pointn is located before the CDS. |
| - In-frame and retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| Tgene | SHROOM3 | chr10:116596005 | chr4:77476762 | ENST00000296043 | 0 | 11 | 1669_1957 | 56.0 | 1997.0 | Domain | ASD2 | |
| Tgene | SHROOM3 | chr10:116596005 | chr4:77476762 | ENST00000296043 | 0 | 11 | 928_1030 | 56.0 | 1997.0 | Domain | ASD1 |
| - In-frame and not-retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| Tgene | SHROOM3 | chr10:116596005 | chr4:77476762 | ENST00000296043 | 0 | 11 | 25_110 | 56.0 | 1997.0 | Domain | PDZ |
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Fusion Gene Sequence for FAM160B1-SHROOM3 |
| For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones. |
| >In-frame_ENST00000369250_ENST00000296043_TCGA-AP-A3K1-01A_FAM160B1_chr10_116596005_+_SHROOM3_chr4_77476762_length(transcript)=10756nt_BP=857nt GCAGGCCGCGGCGGGCAGAGCGGGGGGAAGGAACCCGAGCCGGGCTGCCACCGTGTCCCAACCGGTGCCGCCGCCGGAGCTTCTCCGGGC CCCGAGTCCTCGCCGAACGCCCTCCTCGCCGCCCGCCGCGTCCCGGCGCCCTCCGGAGCCGCCGAGCCGCCCGCGCACACCTGAAGCGGC CGGGCCAGGCCCTGCCTCGATCCTCAGCTCGTCCTCCCCGCCCCGCACCGGCCTTCACTCTGGAGCGGCCCCGGCAGCCGCAGCAGGGGC GGCGGCGGCGGATCGAGGAGCTCTCCAGGTCGTCCCGGGAGAGGCTGCTGCAGTCCCGGGACAGGATGTTCTCCAAGTTCACCTCCATCC TGCAGCACGCCGTGGAGGCGCTTGCACCTTCTCTTCCTTTACAAGAAGATTTTGTTTATCACTGGAAGGCAATTACCCATTACTACATAG AGACTTCAGATGATAAAGCCCCAGTGACCGATACAAATATTCCATCGCATCTGGAACAGATGTTAGATATACTGGTTCAAGAAGAAAATG AACGGGAATCTGGAGAGACAGGGCCATGTATGGAATATTTGCTTCATCACAAGATCTTGGAAACATTATATACCTTGGGGAAAGCTGATT GTCCTCCGGGAATGAAACAGCAGGTTTTGGTTTTCTATACGAAACTTCTGGGAAGAATCCGGCAGCCACTACTTCCACACATTAACGTGC ACAGGCCAGTGCAGAAATTAATTAGACTCTGTGGTGAAGTCCTAGCAACACCAACAGAAAATGAAGAGATTCAGTTTCTTTGCATTGTGT GTGCGAAGCTGAAACAGGACCCCTACCTGGTTAACTTTTTCCTAGAGGTCGAAGAAGGGGGCAAAGCAGACACCCTGAGCTCCAAACTGC AGGCTGGGGATGAGGTTGTGCACATCAATGAGGTGACTCTGAGCAGCTCCAGAAAGGAGGCAGTTTCCCTGGTGAAAGGATCCTACAAGA CCCTCAGGCTGGTAGTGCGCAGAGATGTGTGCACAGACCCAGGCCATGCAGATACTGGTGCCTCTAACTTCGTCAGCCCAGAACACCTCA CCTCTGGCCCCCAGCACAGGAAAGCAGCGTGGTCAGGAGGGGTTAAACTTCGGCTGAAGCACAGGCGCAGTGAGCCTGCAGGCCGACCTC ACTCGTGGCACACAACTAAATCTGGGGAGAAGCAACCCGATGCCAGCATGATGCAGATATCTCAGGGTATGATCGGCCCTCCTTGGCACC AAAGCTACCATTCCAGCTCCTCTACTAGTGACCTCTCCAACTATGACCATGCTTATCTAAGGCGGAGCCCTGACCAGTGCAGCTCCCAGG GGAGCATGGAGAGCCTGGAGCCCAGTGGGGCATACCCACCCTGTCATCTTTCCCCTGCCAAGTCCACCGGCAGCATTGACCAGCTCAGCC ACTTCCATAACAAGAGAGACTCGGCTTACAGCTCTTTCTCCACCAGTTCTAGCATCCTAGAGTATCCACACCCTGGCATCTCTGGCCGGG AGCGTTCAGGCTCCATGGACAATACTTCTGCTCGAGGTGGCCTCCTCGAAGGGATGAGGCAGGCAGATATTCGCTATGTCAAGACAGTCT ATGACACCCGGAGGGGAGTCTCAGCAGAGTATGAGGTGAACTCTTCAGCCCTGCTGCTTCAAGGTAGGGAGGCCCGAGCCTCAGCAAATG GTCAGGGCTATGATAAATGGTCTAATATTCCTCGGGGCAAGGGAGTGCCACCCCCATCCTGGAGCCAGCAGTGCCCCAGTTCCTTGGAGA CTGCCACGGACAACCTTCCTCCTAAGGTGGGTGCACCCCTGCCTCCAGCTCGGAGTGACAGTTACGCAGCATTTCGGCACCGTGAGCGGC CCAGCTCCTGGTCTAGCCTTGATCAGAAACGGCTCTGCCGGCCTCAGGCAAACTCTTTAGGCTCCCTGAAGTCTCCATTCATAGAGGAGC AGCTGCATACTGTGCTGGAGAAGAGTCCAGAGAACAGCCCCCCAGTGAAGCCCAAGCATAACTATACCCAGAAGGCCCAACCTGGCCAAC CTCTGCTGCCGACCAGCATCTACCCGGTACCTTCCCTGGAGCCACACTTTGCCCAGGTGCCTCAGCCTTCTGTGAGTAGCAACGGTATGC TCTACCCTGCACTGGCCAAGGAGAGTGGATACATAGCCCCTCAGGGAGCATGCAACAAGATGGCTACCATTGATGAGAATGGGAACCAGA ATGGATCTGGCAGGCCTGGGTTTGCCTTCTGCCAGCCCTTAGAACATGACTTGCTGTCCCCAGTGGAGAAGAAACCAGAAGCTACAGCCA AGTATGTCCCCTCCAAAGTCCATTTCTGTTCAGTGCCTGAAAATGAGGAGGATGCCTCCCTGAAGAGACATCTCACACCTCCCCAAGGCA ACAGCCCACATTCCAATGAGAGAAAGAGCACCCACAGTAACAAACCATCTTCTCATCCCCACAGCCTCAAATGCCCTCAGGCTCAGGCCT GGCAAGCGGGTGAAGACAAGAGATCTTCCAGGCTCTCAGAGCCCTGGGAGGGCGATTTCCAGGAAGACCACAATGCCAACCTCTGGAGGA GGCTGGAGAGAGAAGGCCTAGGCCAGAGCCTGTCAGGCAACTTTGGCAAGACCAAGTCAGCCTTCTCATCTCTCCAGAACATTCCTGAGA GTCTGAGAAGACACAGCAGCCTGGAGCTAGGCCGGGGAACCCAGGAGGGTTACCCCGGGGGCAGGCCCACCTGTGCAGTCAACACCAAGG CAGAAGACCCTGGGAGGAAAGCCGCTCCTGACCTCGGGAGCCATCTGGACCGGCAGGTTTCCTACCCGCGGCCCGAGGGGAGGACCGGTG CCTCGGCTTCTTTCAACAGCACAGACCCAAGTCCCGAAGAGCCGCCTGCCCCCTCGCACCCGCACACATCCAGTCTGGGCCGGAGGGGGC CCGGCCCAGGCAGCGCCTCGGCTCTTCAGGGCTTTCAGTACGGGAAGCCCCACTGCTCGGTGCTGGAGAAGGTCTCCAAATTCGAGCAGC GAGAGCAAGGGAGCCAGAGACCGAGTGTGGGCGGCTCTGGTTTTGGCCATAACTATAGGCCCCACAGGACCGTCTCAACTTCCAGTACTT CTGGGAATGACTTCGAGGAGACAAAAGCACACATTCGTTTCTCTGAGTCAGCTGAACCCCTAGGCAACGGGGAGCAGCACTTCAAAAACG GGGAGCTGAAGTTGGAAGAGGCTTCCCGGCAGCCCTGCGGTCAGCAGCTGAGCGGAGGAGCGTCGGACAGCGGCCGTGGCCCCCAGAGGC CGGACGCTCGGCTCCTCCGTAGCCAGAGCACCTTCCAGCTCTCCAGCGAGCCAGAGAGGGAGCCCGAGTGGCGGGACAGGCCCGGCTCGC CCGAATCGCCCCTGCTGGATGCCCCCTTCAGCCGCGCCTACCGGAACAGCATCAAGGACGCACAGTCCCGTGTCTTGGGGGCCACCTCCT TTCGACGTCGAGACCTGGAGCTGGGGGCGCCCGTGGCGTCGAGGTCCTGGCGGCCACGGCCTTCCTCGGCCCACGTGGGGCTGCGGAGCC CCGAGGCGTCGGCCTCCGCCTCCCCGCACACGCCCCGGGAGCGGCACAGCGTGACCCCTGCTGAGGGCGACCTGGCCAGGCCCGTGCCCC CTGCCGCCCGGAGAGGTGCTCGCCGGCGCCTGACTCCCGAGCAGAAGAAGCGCTCCTACTCGGAGCCCGAGAAGATGAACGAGGTGGGGA TCGTGGAGGAGGCCGAACCGGCACCCCTGGGCCCGCAGAGAAATGGGATGCGTTTCCCGGAGAGCAGCGTGGCCGACCGGCGCCGTCTCT TCGAGCGCGATGGCAAGGCCTGCTCCACGCTCAGCCTGTCGGGGCCCGAGCTGAAGCAGTTCCAGCAGAGCGCCCTGGCGGACTACATCC AGCGCAAGACCGGCAAGCGGCCTACCTCCGCCGCCGGCTGCAGCCTCCAGGAGCCCGGGCCACTGCGTGAGCGCGCCCAGAGTGCCTACC TCCAGCCCGGCCCCGCGGCGCTCGAAGGCTCCGGCCTCGCCTCGGCCTCCAGCTTGAGCTCACTGCGGGAGCCCAGCCTGCAGCCCCGCA GGGAGGCCACGCTCCTGCCGGCCACAGTTGCAGAAACCCAGCAGGCTCCCCGAGATCGCAGCAGCTCCTTCGCCGGTGGCCGCCGCCTCG GGGAACGGCGACGCGGGGACCTGCTTAGCGGAGCAAACGGTGGAACAAGGGGCACCCAGAGAGGGGATGAGACCCCCAGGGAGCCATCCT CCTGGGGGGCCAGGGCCGGGAAGTCCATGTCGGCCGAGGACCTGCTGGAACGCTCGGACGTCCTTGCGGGCCCTGTCCATGTGAGGTCCA GGTCATCTCCCGCCACCGCAGACAAGCGCCAGGATGTGCTTTTGGGGCAAGACAGTGGCTTTGGTCTTGTGAAGGATCCATGTTATTTGG CTGGTCCTGGATCTAGGTCACTCAGTTGTTCAGAAAGAGGCCAAGAAGAGATGCTGCCGCTCTTCCACCATCTCACCCCTCGTTGGGGTG GTTCAGGCTGCAAAGCCATTGGTGATTCCTCCGTTCCTAGTGAATGTCCTGGAACCCTGGACCATCAGAGGCAAGCCAGTAGGACACCCT GCCCCAGGCCACCACTGGCAGGAACGCAAGGGCTGGTCACAGACACCAGGGCTGCACCCCTGACCCCAATTGGCACCCCTCTGCCTTCAG CCATTCCCTCTGGCTACTGCTCACAGGACGGTCAGACAGGGCGACAGCCTCTCCCGCCCTACACCCCTGCCATGATGCACAGAAGCAATG GTCACACCCTGACCCAGCCTCCCGGTCCAAGAGGCTGTGAGGGCGATGGCCCAGAGCATGGGGTAGAAGAGGGAACGAGGAAGAGGGTCT CGCTGCCTCAGTGGCCACCTCCTTCTCGAGCAAAGTGGGCCCACGCAGCCAGAGAGGACAGCCTTCCTGAGGAATCCTCAGCCCCTGATT TTGCAAACCTGAAGCACTATCAAAAACAGCAGAGTCTTCCAAGTTTATGCAGCACTTCTGACCCAGACACACCTCTTGGGGCCCCGAGCA CTCCAGGGAGGATCTCCCTCCGAATATCTGAGTCTGTCCTGCGGGACTCCCCGCCACCTCATGAGGATTATGAAGACGAAGTGTTTGTGA GGGATCCGCACCCCAAGGCCACGTCCAGCCCCACATTTGAACCTCTTCCCCCACCCCCACCTCCTCCACCGAGTCAGGAAACCCCGGTGT ATAGCATGGATGACTTCCCTCCACCTCCTCCCCACACTGTATGTGAGGCGCAGCTGGACAGTGAGGATCCCGAGGGGCCACGCCCCAGCT TCAACAAACTTTCTAAAGTGACAATTGCAAGGGAAAGGCACATGCCTGGTGCAGCCCATGTGGTAGGTAGTCAGACACTGGCTTCCAGAC TCCAAACTTCTATCAAGGGTTCAGAGGCTGAGTCCACACCACCCTCCTTCATGAGCGTTCACGCCCAACTTGCTGGGTCTCTTGGTGGGC AGCCAGCACCCATCCAGACTCAAAGCCTCAGCCATGATCCAGTCAGTGGAACTCAGGGTTTAGAAAAGAAAGTCAGTCCTGATCCTCAGA AGAGTTCAGAAGACATCAGAACAGAGGCTTTGGCCAAGGAAATTGTCCACCAAGACAAATCTCTAGCAGACATTTTGGATCCAGACTCCA GGCTGAAGACAACAATGGACCTGATGGAAGGTTTGTTTCCCCGAGATGTGAACTTGCTGAAGGAAAACAGTGTAAAGAGGAAGGCCATAC AGAGAACTGTCAGCTCTTCAGGATGTGAAGGCAAGAGGAATGAAGACAAGGAAGCAGTGAGCATGTTGGTTAACTGCCCTGCCTACTACA GTGTGTCTGCTCCCAAGGCTGAGCTACTGAACAAAATCAAAGAGATGCCAGCAGAAGTGAATGAGGAAGAGGAACAGGCAGATGTCAATG AAAAGAAGGCTGAGCTCATTGGAAGTCTCACCCACAAGCTGGAGACCCTCCAGGAGGCGAAGGGGAGCCTGCTCACGGACATCAAGCTCA ACAACGCCCTGGGAGAAGAGGTGGAGGCTCTGATCAGCGAGCTCTGCAAGCCCAATGAGTTTGACAAGTATAGGATGTTCATAGGGGATT TGGACAAGGTGGTCAACCTGCTGCTCTCCCTCTCGGGGCGTCTAGCCCGTGTTGAGAATGTCCTTAGCGGCCTTGGTGAAGATGCCAGTA ATGAAGAAAGGAGCTCTCTTTACGAGAAAAGGAAGATCCTGGCTGGTCAGCATGAGGATGCCCGGGAGCTGAAGGAGAACCTGGATCGCA GGGAGCGAGTAGTGCTGGGCATCTTGGCCAATTACCTTTCAGAGGAGCAGCTCCAGGACTACCAGCACTTCGTGAAAATGAAGTCCACGC TCCTCATTGAGCAACGGAAGCTGGATGACAAGATCAAGCTGGGCCAGGAGCAGGTCAAGTGTCTGCTGGAGAGCCTGCCCTCAGATTTCA TTCCCAAGGCTGGGGCCCTGGCTCTGCCCCCAAACCTCACGAGTGAGCCCATTCCTGCTGGGGGCTGTACTTTCAGTGGTATTTTCCCAA CATTAACCTCTCCACTTTAACCTCTTCTAAAATACCCAACCAAAAGATCACTGTTTCTCTCAACACTATTTAATCTGAAAAATGTTTCAG TACAAACCACTGTTTGAACTATCTGGGTTATTGGTGTTTGTTCCTGATGAAAGGAAAAAAATTCTCTCCAGGAGGAAGCCTTTTTCCTTC TTGCCCTTCCTGATTGATCTTCTGAGAGCTCGAATGCTGCTGGACACGTACCCCTTTCTATTATTACTTTGTAGTAGAAAGAAAGTTAAT GAAACTGAGAACTGATTGGAGGGTGTTTGATCATTTAGTTTTTAACAGGCTGAGGCAACATGGATCAGTGTGTGTCCCCCTCAGGAATGT ATCCACAGTGGCCTTCCTTGCTGGTGGGCAGTGTATCCTGATGGCAGGGTACAAGTACCATTAATGAAGGGTCTGCAACATAAAGCCTTA AAAAGACACACACTAAGAAAACTGTAAAACCTTGAACATTGTTATTTATATTTTTTAAAATGGAAAAGATCACTATGTTTGTTGTGCTAA CCACTTATTTGATTCTGTTTTGTGGTGGACATAGATGATTACGTTTGAGCTTTGTATTTTGTGAAAACCTTAATGAAATGAATTCCAAAG ATAGTCACGTTGAGCGTGAAGACTTTTTTTCTTACATTCCTGTCTTATTTTTACCAACACGAGCAGGCATTCTGCGCTTCCACTGGACTG AGTATGGGGGAGTCCTGCTCCCCTCCTGTCTCACACCTTCCCCAGGAGGAAGGCCTCATGCACTGCGGTTATTGCATCATTTCCTAGTGC TTCATGTCATTATCACTGGTGGGGAAACAAAGCTAAATTTTATTAACAAAGACAACTCTCAGACCTATATAATAGGAGGAGGACGTCCAG AATCCAACAAAATTCAAACGGAGCCCATGCTGTTCTCCTGAACAAGATTTGGGCTAAATACGGCCTGTTTATTGAGGCTGTTTTAATGAT GCTTTAAAAAAAAAAAATGTTTTCTAAAATGTCAAACCTGTTGACCACACTTTGATTAAAAACTGCCTCCTTAACCTCTGAAGACTGATT TTGCTTTATCATGTTTCAATAATAACATTTCAGAGGTTACTCTGTAGCCCCAGTTGTAAGCTTATAAAAACAAACTGGAAGGCTGAGGAG GTTATGGGCTGGCAGCCAGGCTATGTTTACAGCTGCTGGAGATGGCAGTAGCCTTATACTTTGAGCAGGTAGTACATCCCAGGCTGTGCT AGAGGTAGATTTGTTTTTTCACGTTTGATCTGTGGCTGGTGGCCACCTTTGTTGATTTGGGCTTACGAGTTTCATAGTAGCCAGTCTTAG AAAATTGGGGGAGTAAAATTTTGAAGTAAAAAAAAAAAAAAAATGACAAGGGAACCAAATGCTCCTTCTCCCCTTAGTACATTTTCATTA CTTAATGAAGTTTTATCTCCTATGTAAGAATATCAAAATTGTAGTTTGGGTCTCCAGTAGAGATGTCTTTTGATTAACTTATAAACAACT GGCCACCCAGAAGTTTCCTTTGCATAGTCAACCAAAGCTATGGCTTTGTTCTTTGGAGCTTATATACTGCATGACTCCATTGATACAAAT AAGACAGCACCTTGGTTTCCCAGGGATGTTTTCATTCAGAGGTCCTGTCTCCCAGGAAAGCAGTAGAACCAGTGACAGCATTCAACAGCC ACACTGCATGGTCATCAGTCTTAGGCCAACATGGGAGCCTGAAATTAACTCCATCAGTAACTACCTGTGTGTCTTGCTGATACTGAATGA GCCCTCACAAGCCAAGCCAGGTGGAAGACAGCCAGCAAACGTCTACAGTTATTCTTAGTGAAATTCCTCAGAGGAATCCAGGGGGCTCCC AGTTCCCAACACTCTTCGAGATGACCATTTTTCGGGATTTGACTGGGGAACATTTTACATATTCAGTCTTTCTCAAAAATTTTTATTTAT TTTCTTGAGAAAGGGTCTTACTATGTTGCCCAGGCTGGAGTGCAGAGTGGTGCGATAACAGCTCATTGCAGTCTGAACCTCTGAGGCTCA AGCCATCCTCCCATCTCAGCCTCCCAAGTAGCTGGGACCACAGGTGTGCACCACTATGCTTGGCTAATTTTTTGATTTTTTATAGAGACG GGGGTCTCGCTATGTTGCCCAGGCTGGTTTCAAACTCCTGGGCTCAAGGGATCCTTCCGCTTTGGTCCCAGAAGTGCTGGGATTACAGGC ATGAGCCACTTCACCCAGCCACTTTTCTAATTTATAGACATAAAAGTAATTGACTCCCACAGCACAGTAACAGGCAATGCTGCTTGGCAT GCCACAAACATCTGAAAGCTTGTGACACTCCTAGGATTGTGTCCATTCTTTCATTATGTGGAAACTTTGTTCTGTTATGTGAAATGGGTA AGGCACCAAGTGAGACTTTGAAATCTAATTTTTAGGTGGATGTGATATTTATTGTAATAGGACTTGACCTCTGTACTTTAAAGAAATCAC TAACCAAATTTTCAAAGTTTCCTTTTAAATGCGTTTAGCTAGAAATCTATGTATTTATCCCTTTCCTATTTTGCATTCTTCTCCCACTAT TTTTAAAAACTCATTTACAGTAGAAACCATTCTTCTTTCTCCCAACAGTATCCTTTGCCAAGACCATGAGAACAGTAAGGAGCATGTTGT TGGTCAGGGTTTCAGAATACGCGTGATGTCACTGAGAATGTTTGCTCACAGTCAATAATTGTCTTTGTGGATGTGATAATTTTGGAGATA CACTTCTGGTCAGAACTCAGGTGAGATAATCTTGCAATACTCCAAATGCAGATACTCCAGCCACCCGCAAGGTTCCAGGAAAGGACAATG TCCTGCGAGAAAATCAGGAGGCCTCCACTTCCTGGGCCACTTGAGAAGTTCCTGGGCATGTCACTACATGTTGGTTGACTCAGCCATTTC TCATGCTGTTTTGTTTCTTGCGGTGGCCACTTAACCCCAAAGAATGAAGGGAGGATCCACAGTGAAAGTGCCTGAGTTTCTCTATGAGAC CAGATGCTGTCGAAACCAAACATCTTTTCCTTTGCTCTATGGGAACATTTTAGGGTTTGTTTTGCACAGCTGGTTTCCAGACTAGAAGAT TAACAAGTTTGGGTCCACCCCTAAGAATCAGTGGCTGTCTTTTAAGGTGAGGAGTGTGGGCTTAACTGAGGTCCTTTGAGGGAGCTATAA AGGAGAAACAACCTGGGACATCCCAGTTTTCCTATTCCTCCACTGTTAATATCTCATCTAAAATAATTCATGAGTTTAAATGGTAAATAT ATGCTTTAAGCTCTACCTTTAAACTTGTATGTTATTCAGGCATCTCTTATTAAGATACTGGGTCTCTGGATACCCAAGGAAATGTTGGCT TTTTATTCTTATGTGGTTCCAAATTTACTTCTCTTCAGTTTAATTGTCCATGGTAGTGCTGGCTTCATTGTTAGGTTGGAGTTATTATTT TCCTTTTAGAACAACATGAATTTTATTCACCTTACTATTAGAAAAAGGAATAACTACAGCCAGAAATAACTTCATTTCCTACAAGGTATA AAAAGTGGTCAAGTGAATGTGAAGGGGCTTTTCTACACAGGAATATATTATCGGGAACAAAGTATTTCCTGCTGCCTTAACTCTTTGGGA TGCATAGGATAAAATGATAAAGACCATTTTAATATCAGAAAGGGTTGTCTTATTAATTTTTAAATAAAACTTCACATTTCTTAATGGGGA GCTCATTCAGAAACTAAATAATGGTTTCTCAAAGTGTGGTCAGGATACGATCTGCATCAGAATCCTTGGAATGCTTGTTAAAAATACCAA TTGCTATGACAAAACCAAGTCTGCTGGAAACTGCATTTCAGCAGGTTTCCCATGTTATTCTGATGTATTTTAACATTTGAGAGCCACTAC CAATCATCTGTACAGTTCCTACTGTTATGATCACAATAAGACTAACATGAATTTAATAATCTGAATAATTTTTAAAATTTAAATAAACAG >In-frame_ENST00000369250_ENST00000296043_TCGA-AP-A3K1-01A_FAM160B1_chr10_116596005_+_SHROOM3_chr4_77476762_length(amino acids)=2211AA_start in transcript=44_stop in transcript=6679 MPPCPNRCRRRSFSGPRVLAERPPRRPPRPGALRSRRAARAHLKRPGQALPRSSARPPRPAPAFTLERPRQPQQGRRRRIEELSRSSRER LLQSRDRMFSKFTSILQHAVEALAPSLPLQEDFVYHWKAITHYYIETSDDKAPVTDTNIPSHLEQMLDILVQEENERESGETGPCMEYLL HHKILETLYTLGKADCPPGMKQQVLVFYTKLLGRIRQPLLPHINVHRPVQKLIRLCGEVLATPTENEEIQFLCIVCAKLKQDPYLVNFFL EVEEGGKADTLSSKLQAGDEVVHINEVTLSSSRKEAVSLVKGSYKTLRLVVRRDVCTDPGHADTGASNFVSPEHLTSGPQHRKAAWSGGV KLRLKHRRSEPAGRPHSWHTTKSGEKQPDASMMQISQGMIGPPWHQSYHSSSSTSDLSNYDHAYLRRSPDQCSSQGSMESLEPSGAYPPC HLSPAKSTGSIDQLSHFHNKRDSAYSSFSTSSSILEYPHPGISGRERSGSMDNTSARGGLLEGMRQADIRYVKTVYDTRRGVSAEYEVNS SALLLQGREARASANGQGYDKWSNIPRGKGVPPPSWSQQCPSSLETATDNLPPKVGAPLPPARSDSYAAFRHRERPSSWSSLDQKRLCRP QANSLGSLKSPFIEEQLHTVLEKSPENSPPVKPKHNYTQKAQPGQPLLPTSIYPVPSLEPHFAQVPQPSVSSNGMLYPALAKESGYIAPQ GACNKMATIDENGNQNGSGRPGFAFCQPLEHDLLSPVEKKPEATAKYVPSKVHFCSVPENEEDASLKRHLTPPQGNSPHSNERKSTHSNK PSSHPHSLKCPQAQAWQAGEDKRSSRLSEPWEGDFQEDHNANLWRRLEREGLGQSLSGNFGKTKSAFSSLQNIPESLRRHSSLELGRGTQ EGYPGGRPTCAVNTKAEDPGRKAAPDLGSHLDRQVSYPRPEGRTGASASFNSTDPSPEEPPAPSHPHTSSLGRRGPGPGSASALQGFQYG KPHCSVLEKVSKFEQREQGSQRPSVGGSGFGHNYRPHRTVSTSSTSGNDFEETKAHIRFSESAEPLGNGEQHFKNGELKLEEASRQPCGQ QLSGGASDSGRGPQRPDARLLRSQSTFQLSSEPEREPEWRDRPGSPESPLLDAPFSRAYRNSIKDAQSRVLGATSFRRRDLELGAPVASR SWRPRPSSAHVGLRSPEASASASPHTPRERHSVTPAEGDLARPVPPAARRGARRRLTPEQKKRSYSEPEKMNEVGIVEEAEPAPLGPQRN GMRFPESSVADRRRLFERDGKACSTLSLSGPELKQFQQSALADYIQRKTGKRPTSAAGCSLQEPGPLRERAQSAYLQPGPAALEGSGLAS ASSLSSLREPSLQPRREATLLPATVAETQQAPRDRSSSFAGGRRLGERRRGDLLSGANGGTRGTQRGDETPREPSSWGARAGKSMSAEDL LERSDVLAGPVHVRSRSSPATADKRQDVLLGQDSGFGLVKDPCYLAGPGSRSLSCSERGQEEMLPLFHHLTPRWGGSGCKAIGDSSVPSE CPGTLDHQRQASRTPCPRPPLAGTQGLVTDTRAAPLTPIGTPLPSAIPSGYCSQDGQTGRQPLPPYTPAMMHRSNGHTLTQPPGPRGCEG DGPEHGVEEGTRKRVSLPQWPPPSRAKWAHAAREDSLPEESSAPDFANLKHYQKQQSLPSLCSTSDPDTPLGAPSTPGRISLRISESVLR DSPPPHEDYEDEVFVRDPHPKATSSPTFEPLPPPPPPPPSQETPVYSMDDFPPPPPHTVCEAQLDSEDPEGPRPSFNKLSKVTIARERHM PGAAHVVGSQTLASRLQTSIKGSEAESTPPSFMSVHAQLAGSLGGQPAPIQTQSLSHDPVSGTQGLEKKVSPDPQKSSEDIRTEALAKEI VHQDKSLADILDPDSRLKTTMDLMEGLFPRDVNLLKENSVKRKAIQRTVSSSGCEGKRNEDKEAVSMLVNCPAYYSVSAPKAELLNKIKE MPAEVNEEEEQADVNEKKAELIGSLTHKLETLQEAKGSLLTDIKLNNALGEEVEALISELCKPNEFDKYRMFIGDLDKVVNLLLSLSGRL ARVENVLSGLGEDASNEERSSLYEKRKILAGQHEDARELKENLDRRERVVLGILANYLSEEQLQDYQHFVKMKSTLLIEQRKLDDKIKLG -------------------------------------------------------------- >In-frame_ENST00000369248_ENST00000296043_TCGA-AP-A3K1-01A_FAM160B1_chr10_116596005_+_SHROOM3_chr4_77476762_length(transcript)=10756nt_BP=857nt GCAGGCCGCGGCGGGCAGAGCGGGGGGAAGGAACCCGAGCCGGGCTGCCACCGTGTCCCAACCGGTGCCGCCGCCGGAGCTTCTCCGGGC CCCGAGTCCTCGCCGAACGCCCTCCTCGCCGCCCGCCGCGTCCCGGCGCCCTCCGGAGCCGCCGAGCCGCCCGCGCACACCTGAAGCGGC CGGGCCAGGCCCTGCCTCGATCCTCAGCTCGTCCTCCCCGCCCCGCACCGGCCTTCACTCTGGAGCGGCCCCGGCAGCCGCAGCAGGGGC GGCGGCGGCGGATCGAGGAGCTCTCCAGGTCGTCCCGGGAGAGGCTGCTGCAGTCCCGGGACAGGATGTTCTCCAAGTTCACCTCCATCC TGCAGCACGCCGTGGAGGCGCTTGCACCTTCTCTTCCTTTACAAGAAGATTTTGTTTATCACTGGAAGGCAATTACCCATTACTACATAG AGACTTCAGATGATAAAGCCCCAGTGACCGATACAAATATTCCATCGCATCTGGAACAGATGTTAGATATACTGGTTCAAGAAGAAAATG AACGGGAATCTGGAGAGACAGGGCCATGTATGGAATATTTGCTTCATCACAAGATCTTGGAAACATTATATACCTTGGGGAAAGCTGATT GTCCTCCGGGAATGAAACAGCAGGTTTTGGTTTTCTATACGAAACTTCTGGGAAGAATCCGGCAGCCACTACTTCCACACATTAACGTGC ACAGGCCAGTGCAGAAATTAATTAGACTCTGTGGTGAAGTCCTAGCAACACCAACAGAAAATGAAGAGATTCAGTTTCTTTGCATTGTGT GTGCGAAGCTGAAACAGGACCCCTACCTGGTTAACTTTTTCCTAGAGGTCGAAGAAGGGGGCAAAGCAGACACCCTGAGCTCCAAACTGC AGGCTGGGGATGAGGTTGTGCACATCAATGAGGTGACTCTGAGCAGCTCCAGAAAGGAGGCAGTTTCCCTGGTGAAAGGATCCTACAAGA CCCTCAGGCTGGTAGTGCGCAGAGATGTGTGCACAGACCCAGGCCATGCAGATACTGGTGCCTCTAACTTCGTCAGCCCAGAACACCTCA CCTCTGGCCCCCAGCACAGGAAAGCAGCGTGGTCAGGAGGGGTTAAACTTCGGCTGAAGCACAGGCGCAGTGAGCCTGCAGGCCGACCTC ACTCGTGGCACACAACTAAATCTGGGGAGAAGCAACCCGATGCCAGCATGATGCAGATATCTCAGGGTATGATCGGCCCTCCTTGGCACC AAAGCTACCATTCCAGCTCCTCTACTAGTGACCTCTCCAACTATGACCATGCTTATCTAAGGCGGAGCCCTGACCAGTGCAGCTCCCAGG GGAGCATGGAGAGCCTGGAGCCCAGTGGGGCATACCCACCCTGTCATCTTTCCCCTGCCAAGTCCACCGGCAGCATTGACCAGCTCAGCC ACTTCCATAACAAGAGAGACTCGGCTTACAGCTCTTTCTCCACCAGTTCTAGCATCCTAGAGTATCCACACCCTGGCATCTCTGGCCGGG AGCGTTCAGGCTCCATGGACAATACTTCTGCTCGAGGTGGCCTCCTCGAAGGGATGAGGCAGGCAGATATTCGCTATGTCAAGACAGTCT ATGACACCCGGAGGGGAGTCTCAGCAGAGTATGAGGTGAACTCTTCAGCCCTGCTGCTTCAAGGTAGGGAGGCCCGAGCCTCAGCAAATG GTCAGGGCTATGATAAATGGTCTAATATTCCTCGGGGCAAGGGAGTGCCACCCCCATCCTGGAGCCAGCAGTGCCCCAGTTCCTTGGAGA CTGCCACGGACAACCTTCCTCCTAAGGTGGGTGCACCCCTGCCTCCAGCTCGGAGTGACAGTTACGCAGCATTTCGGCACCGTGAGCGGC CCAGCTCCTGGTCTAGCCTTGATCAGAAACGGCTCTGCCGGCCTCAGGCAAACTCTTTAGGCTCCCTGAAGTCTCCATTCATAGAGGAGC AGCTGCATACTGTGCTGGAGAAGAGTCCAGAGAACAGCCCCCCAGTGAAGCCCAAGCATAACTATACCCAGAAGGCCCAACCTGGCCAAC CTCTGCTGCCGACCAGCATCTACCCGGTACCTTCCCTGGAGCCACACTTTGCCCAGGTGCCTCAGCCTTCTGTGAGTAGCAACGGTATGC TCTACCCTGCACTGGCCAAGGAGAGTGGATACATAGCCCCTCAGGGAGCATGCAACAAGATGGCTACCATTGATGAGAATGGGAACCAGA ATGGATCTGGCAGGCCTGGGTTTGCCTTCTGCCAGCCCTTAGAACATGACTTGCTGTCCCCAGTGGAGAAGAAACCAGAAGCTACAGCCA AGTATGTCCCCTCCAAAGTCCATTTCTGTTCAGTGCCTGAAAATGAGGAGGATGCCTCCCTGAAGAGACATCTCACACCTCCCCAAGGCA ACAGCCCACATTCCAATGAGAGAAAGAGCACCCACAGTAACAAACCATCTTCTCATCCCCACAGCCTCAAATGCCCTCAGGCTCAGGCCT GGCAAGCGGGTGAAGACAAGAGATCTTCCAGGCTCTCAGAGCCCTGGGAGGGCGATTTCCAGGAAGACCACAATGCCAACCTCTGGAGGA GGCTGGAGAGAGAAGGCCTAGGCCAGAGCCTGTCAGGCAACTTTGGCAAGACCAAGTCAGCCTTCTCATCTCTCCAGAACATTCCTGAGA GTCTGAGAAGACACAGCAGCCTGGAGCTAGGCCGGGGAACCCAGGAGGGTTACCCCGGGGGCAGGCCCACCTGTGCAGTCAACACCAAGG CAGAAGACCCTGGGAGGAAAGCCGCTCCTGACCTCGGGAGCCATCTGGACCGGCAGGTTTCCTACCCGCGGCCCGAGGGGAGGACCGGTG CCTCGGCTTCTTTCAACAGCACAGACCCAAGTCCCGAAGAGCCGCCTGCCCCCTCGCACCCGCACACATCCAGTCTGGGCCGGAGGGGGC CCGGCCCAGGCAGCGCCTCGGCTCTTCAGGGCTTTCAGTACGGGAAGCCCCACTGCTCGGTGCTGGAGAAGGTCTCCAAATTCGAGCAGC GAGAGCAAGGGAGCCAGAGACCGAGTGTGGGCGGCTCTGGTTTTGGCCATAACTATAGGCCCCACAGGACCGTCTCAACTTCCAGTACTT CTGGGAATGACTTCGAGGAGACAAAAGCACACATTCGTTTCTCTGAGTCAGCTGAACCCCTAGGCAACGGGGAGCAGCACTTCAAAAACG GGGAGCTGAAGTTGGAAGAGGCTTCCCGGCAGCCCTGCGGTCAGCAGCTGAGCGGAGGAGCGTCGGACAGCGGCCGTGGCCCCCAGAGGC CGGACGCTCGGCTCCTCCGTAGCCAGAGCACCTTCCAGCTCTCCAGCGAGCCAGAGAGGGAGCCCGAGTGGCGGGACAGGCCCGGCTCGC CCGAATCGCCCCTGCTGGATGCCCCCTTCAGCCGCGCCTACCGGAACAGCATCAAGGACGCACAGTCCCGTGTCTTGGGGGCCACCTCCT TTCGACGTCGAGACCTGGAGCTGGGGGCGCCCGTGGCGTCGAGGTCCTGGCGGCCACGGCCTTCCTCGGCCCACGTGGGGCTGCGGAGCC CCGAGGCGTCGGCCTCCGCCTCCCCGCACACGCCCCGGGAGCGGCACAGCGTGACCCCTGCTGAGGGCGACCTGGCCAGGCCCGTGCCCC CTGCCGCCCGGAGAGGTGCTCGCCGGCGCCTGACTCCCGAGCAGAAGAAGCGCTCCTACTCGGAGCCCGAGAAGATGAACGAGGTGGGGA TCGTGGAGGAGGCCGAACCGGCACCCCTGGGCCCGCAGAGAAATGGGATGCGTTTCCCGGAGAGCAGCGTGGCCGACCGGCGCCGTCTCT TCGAGCGCGATGGCAAGGCCTGCTCCACGCTCAGCCTGTCGGGGCCCGAGCTGAAGCAGTTCCAGCAGAGCGCCCTGGCGGACTACATCC AGCGCAAGACCGGCAAGCGGCCTACCTCCGCCGCCGGCTGCAGCCTCCAGGAGCCCGGGCCACTGCGTGAGCGCGCCCAGAGTGCCTACC TCCAGCCCGGCCCCGCGGCGCTCGAAGGCTCCGGCCTCGCCTCGGCCTCCAGCTTGAGCTCACTGCGGGAGCCCAGCCTGCAGCCCCGCA GGGAGGCCACGCTCCTGCCGGCCACAGTTGCAGAAACCCAGCAGGCTCCCCGAGATCGCAGCAGCTCCTTCGCCGGTGGCCGCCGCCTCG GGGAACGGCGACGCGGGGACCTGCTTAGCGGAGCAAACGGTGGAACAAGGGGCACCCAGAGAGGGGATGAGACCCCCAGGGAGCCATCCT CCTGGGGGGCCAGGGCCGGGAAGTCCATGTCGGCCGAGGACCTGCTGGAACGCTCGGACGTCCTTGCGGGCCCTGTCCATGTGAGGTCCA GGTCATCTCCCGCCACCGCAGACAAGCGCCAGGATGTGCTTTTGGGGCAAGACAGTGGCTTTGGTCTTGTGAAGGATCCATGTTATTTGG CTGGTCCTGGATCTAGGTCACTCAGTTGTTCAGAAAGAGGCCAAGAAGAGATGCTGCCGCTCTTCCACCATCTCACCCCTCGTTGGGGTG GTTCAGGCTGCAAAGCCATTGGTGATTCCTCCGTTCCTAGTGAATGTCCTGGAACCCTGGACCATCAGAGGCAAGCCAGTAGGACACCCT GCCCCAGGCCACCACTGGCAGGAACGCAAGGGCTGGTCACAGACACCAGGGCTGCACCCCTGACCCCAATTGGCACCCCTCTGCCTTCAG CCATTCCCTCTGGCTACTGCTCACAGGACGGTCAGACAGGGCGACAGCCTCTCCCGCCCTACACCCCTGCCATGATGCACAGAAGCAATG GTCACACCCTGACCCAGCCTCCCGGTCCAAGAGGCTGTGAGGGCGATGGCCCAGAGCATGGGGTAGAAGAGGGAACGAGGAAGAGGGTCT CGCTGCCTCAGTGGCCACCTCCTTCTCGAGCAAAGTGGGCCCACGCAGCCAGAGAGGACAGCCTTCCTGAGGAATCCTCAGCCCCTGATT TTGCAAACCTGAAGCACTATCAAAAACAGCAGAGTCTTCCAAGTTTATGCAGCACTTCTGACCCAGACACACCTCTTGGGGCCCCGAGCA CTCCAGGGAGGATCTCCCTCCGAATATCTGAGTCTGTCCTGCGGGACTCCCCGCCACCTCATGAGGATTATGAAGACGAAGTGTTTGTGA GGGATCCGCACCCCAAGGCCACGTCCAGCCCCACATTTGAACCTCTTCCCCCACCCCCACCTCCTCCACCGAGTCAGGAAACCCCGGTGT ATAGCATGGATGACTTCCCTCCACCTCCTCCCCACACTGTATGTGAGGCGCAGCTGGACAGTGAGGATCCCGAGGGGCCACGCCCCAGCT TCAACAAACTTTCTAAAGTGACAATTGCAAGGGAAAGGCACATGCCTGGTGCAGCCCATGTGGTAGGTAGTCAGACACTGGCTTCCAGAC TCCAAACTTCTATCAAGGGTTCAGAGGCTGAGTCCACACCACCCTCCTTCATGAGCGTTCACGCCCAACTTGCTGGGTCTCTTGGTGGGC AGCCAGCACCCATCCAGACTCAAAGCCTCAGCCATGATCCAGTCAGTGGAACTCAGGGTTTAGAAAAGAAAGTCAGTCCTGATCCTCAGA AGAGTTCAGAAGACATCAGAACAGAGGCTTTGGCCAAGGAAATTGTCCACCAAGACAAATCTCTAGCAGACATTTTGGATCCAGACTCCA GGCTGAAGACAACAATGGACCTGATGGAAGGTTTGTTTCCCCGAGATGTGAACTTGCTGAAGGAAAACAGTGTAAAGAGGAAGGCCATAC AGAGAACTGTCAGCTCTTCAGGATGTGAAGGCAAGAGGAATGAAGACAAGGAAGCAGTGAGCATGTTGGTTAACTGCCCTGCCTACTACA GTGTGTCTGCTCCCAAGGCTGAGCTACTGAACAAAATCAAAGAGATGCCAGCAGAAGTGAATGAGGAAGAGGAACAGGCAGATGTCAATG AAAAGAAGGCTGAGCTCATTGGAAGTCTCACCCACAAGCTGGAGACCCTCCAGGAGGCGAAGGGGAGCCTGCTCACGGACATCAAGCTCA ACAACGCCCTGGGAGAAGAGGTGGAGGCTCTGATCAGCGAGCTCTGCAAGCCCAATGAGTTTGACAAGTATAGGATGTTCATAGGGGATT TGGACAAGGTGGTCAACCTGCTGCTCTCCCTCTCGGGGCGTCTAGCCCGTGTTGAGAATGTCCTTAGCGGCCTTGGTGAAGATGCCAGTA ATGAAGAAAGGAGCTCTCTTTACGAGAAAAGGAAGATCCTGGCTGGTCAGCATGAGGATGCCCGGGAGCTGAAGGAGAACCTGGATCGCA GGGAGCGAGTAGTGCTGGGCATCTTGGCCAATTACCTTTCAGAGGAGCAGCTCCAGGACTACCAGCACTTCGTGAAAATGAAGTCCACGC TCCTCATTGAGCAACGGAAGCTGGATGACAAGATCAAGCTGGGCCAGGAGCAGGTCAAGTGTCTGCTGGAGAGCCTGCCCTCAGATTTCA TTCCCAAGGCTGGGGCCCTGGCTCTGCCCCCAAACCTCACGAGTGAGCCCATTCCTGCTGGGGGCTGTACTTTCAGTGGTATTTTCCCAA CATTAACCTCTCCACTTTAACCTCTTCTAAAATACCCAACCAAAAGATCACTGTTTCTCTCAACACTATTTAATCTGAAAAATGTTTCAG TACAAACCACTGTTTGAACTATCTGGGTTATTGGTGTTTGTTCCTGATGAAAGGAAAAAAATTCTCTCCAGGAGGAAGCCTTTTTCCTTC TTGCCCTTCCTGATTGATCTTCTGAGAGCTCGAATGCTGCTGGACACGTACCCCTTTCTATTATTACTTTGTAGTAGAAAGAAAGTTAAT GAAACTGAGAACTGATTGGAGGGTGTTTGATCATTTAGTTTTTAACAGGCTGAGGCAACATGGATCAGTGTGTGTCCCCCTCAGGAATGT ATCCACAGTGGCCTTCCTTGCTGGTGGGCAGTGTATCCTGATGGCAGGGTACAAGTACCATTAATGAAGGGTCTGCAACATAAAGCCTTA AAAAGACACACACTAAGAAAACTGTAAAACCTTGAACATTGTTATTTATATTTTTTAAAATGGAAAAGATCACTATGTTTGTTGTGCTAA CCACTTATTTGATTCTGTTTTGTGGTGGACATAGATGATTACGTTTGAGCTTTGTATTTTGTGAAAACCTTAATGAAATGAATTCCAAAG ATAGTCACGTTGAGCGTGAAGACTTTTTTTCTTACATTCCTGTCTTATTTTTACCAACACGAGCAGGCATTCTGCGCTTCCACTGGACTG AGTATGGGGGAGTCCTGCTCCCCTCCTGTCTCACACCTTCCCCAGGAGGAAGGCCTCATGCACTGCGGTTATTGCATCATTTCCTAGTGC TTCATGTCATTATCACTGGTGGGGAAACAAAGCTAAATTTTATTAACAAAGACAACTCTCAGACCTATATAATAGGAGGAGGACGTCCAG AATCCAACAAAATTCAAACGGAGCCCATGCTGTTCTCCTGAACAAGATTTGGGCTAAATACGGCCTGTTTATTGAGGCTGTTTTAATGAT GCTTTAAAAAAAAAAAATGTTTTCTAAAATGTCAAACCTGTTGACCACACTTTGATTAAAAACTGCCTCCTTAACCTCTGAAGACTGATT TTGCTTTATCATGTTTCAATAATAACATTTCAGAGGTTACTCTGTAGCCCCAGTTGTAAGCTTATAAAAACAAACTGGAAGGCTGAGGAG GTTATGGGCTGGCAGCCAGGCTATGTTTACAGCTGCTGGAGATGGCAGTAGCCTTATACTTTGAGCAGGTAGTACATCCCAGGCTGTGCT AGAGGTAGATTTGTTTTTTCACGTTTGATCTGTGGCTGGTGGCCACCTTTGTTGATTTGGGCTTACGAGTTTCATAGTAGCCAGTCTTAG AAAATTGGGGGAGTAAAATTTTGAAGTAAAAAAAAAAAAAAAATGACAAGGGAACCAAATGCTCCTTCTCCCCTTAGTACATTTTCATTA CTTAATGAAGTTTTATCTCCTATGTAAGAATATCAAAATTGTAGTTTGGGTCTCCAGTAGAGATGTCTTTTGATTAACTTATAAACAACT GGCCACCCAGAAGTTTCCTTTGCATAGTCAACCAAAGCTATGGCTTTGTTCTTTGGAGCTTATATACTGCATGACTCCATTGATACAAAT AAGACAGCACCTTGGTTTCCCAGGGATGTTTTCATTCAGAGGTCCTGTCTCCCAGGAAAGCAGTAGAACCAGTGACAGCATTCAACAGCC ACACTGCATGGTCATCAGTCTTAGGCCAACATGGGAGCCTGAAATTAACTCCATCAGTAACTACCTGTGTGTCTTGCTGATACTGAATGA GCCCTCACAAGCCAAGCCAGGTGGAAGACAGCCAGCAAACGTCTACAGTTATTCTTAGTGAAATTCCTCAGAGGAATCCAGGGGGCTCCC AGTTCCCAACACTCTTCGAGATGACCATTTTTCGGGATTTGACTGGGGAACATTTTACATATTCAGTCTTTCTCAAAAATTTTTATTTAT TTTCTTGAGAAAGGGTCTTACTATGTTGCCCAGGCTGGAGTGCAGAGTGGTGCGATAACAGCTCATTGCAGTCTGAACCTCTGAGGCTCA AGCCATCCTCCCATCTCAGCCTCCCAAGTAGCTGGGACCACAGGTGTGCACCACTATGCTTGGCTAATTTTTTGATTTTTTATAGAGACG GGGGTCTCGCTATGTTGCCCAGGCTGGTTTCAAACTCCTGGGCTCAAGGGATCCTTCCGCTTTGGTCCCAGAAGTGCTGGGATTACAGGC ATGAGCCACTTCACCCAGCCACTTTTCTAATTTATAGACATAAAAGTAATTGACTCCCACAGCACAGTAACAGGCAATGCTGCTTGGCAT GCCACAAACATCTGAAAGCTTGTGACACTCCTAGGATTGTGTCCATTCTTTCATTATGTGGAAACTTTGTTCTGTTATGTGAAATGGGTA AGGCACCAAGTGAGACTTTGAAATCTAATTTTTAGGTGGATGTGATATTTATTGTAATAGGACTTGACCTCTGTACTTTAAAGAAATCAC TAACCAAATTTTCAAAGTTTCCTTTTAAATGCGTTTAGCTAGAAATCTATGTATTTATCCCTTTCCTATTTTGCATTCTTCTCCCACTAT TTTTAAAAACTCATTTACAGTAGAAACCATTCTTCTTTCTCCCAACAGTATCCTTTGCCAAGACCATGAGAACAGTAAGGAGCATGTTGT TGGTCAGGGTTTCAGAATACGCGTGATGTCACTGAGAATGTTTGCTCACAGTCAATAATTGTCTTTGTGGATGTGATAATTTTGGAGATA CACTTCTGGTCAGAACTCAGGTGAGATAATCTTGCAATACTCCAAATGCAGATACTCCAGCCACCCGCAAGGTTCCAGGAAAGGACAATG TCCTGCGAGAAAATCAGGAGGCCTCCACTTCCTGGGCCACTTGAGAAGTTCCTGGGCATGTCACTACATGTTGGTTGACTCAGCCATTTC TCATGCTGTTTTGTTTCTTGCGGTGGCCACTTAACCCCAAAGAATGAAGGGAGGATCCACAGTGAAAGTGCCTGAGTTTCTCTATGAGAC CAGATGCTGTCGAAACCAAACATCTTTTCCTTTGCTCTATGGGAACATTTTAGGGTTTGTTTTGCACAGCTGGTTTCCAGACTAGAAGAT TAACAAGTTTGGGTCCACCCCTAAGAATCAGTGGCTGTCTTTTAAGGTGAGGAGTGTGGGCTTAACTGAGGTCCTTTGAGGGAGCTATAA AGGAGAAACAACCTGGGACATCCCAGTTTTCCTATTCCTCCACTGTTAATATCTCATCTAAAATAATTCATGAGTTTAAATGGTAAATAT ATGCTTTAAGCTCTACCTTTAAACTTGTATGTTATTCAGGCATCTCTTATTAAGATACTGGGTCTCTGGATACCCAAGGAAATGTTGGCT TTTTATTCTTATGTGGTTCCAAATTTACTTCTCTTCAGTTTAATTGTCCATGGTAGTGCTGGCTTCATTGTTAGGTTGGAGTTATTATTT TCCTTTTAGAACAACATGAATTTTATTCACCTTACTATTAGAAAAAGGAATAACTACAGCCAGAAATAACTTCATTTCCTACAAGGTATA AAAAGTGGTCAAGTGAATGTGAAGGGGCTTTTCTACACAGGAATATATTATCGGGAACAAAGTATTTCCTGCTGCCTTAACTCTTTGGGA TGCATAGGATAAAATGATAAAGACCATTTTAATATCAGAAAGGGTTGTCTTATTAATTTTTAAATAAAACTTCACATTTCTTAATGGGGA GCTCATTCAGAAACTAAATAATGGTTTCTCAAAGTGTGGTCAGGATACGATCTGCATCAGAATCCTTGGAATGCTTGTTAAAAATACCAA TTGCTATGACAAAACCAAGTCTGCTGGAAACTGCATTTCAGCAGGTTTCCCATGTTATTCTGATGTATTTTAACATTTGAGAGCCACTAC CAATCATCTGTACAGTTCCTACTGTTATGATCACAATAAGACTAACATGAATTTAATAATCTGAATAATTTTTAAAATTTAAATAAACAG >In-frame_ENST00000369248_ENST00000296043_TCGA-AP-A3K1-01A_FAM160B1_chr10_116596005_+_SHROOM3_chr4_77476762_length(amino acids)=2211AA_start in transcript=44_stop in transcript=6679 MPPCPNRCRRRSFSGPRVLAERPPRRPPRPGALRSRRAARAHLKRPGQALPRSSARPPRPAPAFTLERPRQPQQGRRRRIEELSRSSRER LLQSRDRMFSKFTSILQHAVEALAPSLPLQEDFVYHWKAITHYYIETSDDKAPVTDTNIPSHLEQMLDILVQEENERESGETGPCMEYLL HHKILETLYTLGKADCPPGMKQQVLVFYTKLLGRIRQPLLPHINVHRPVQKLIRLCGEVLATPTENEEIQFLCIVCAKLKQDPYLVNFFL EVEEGGKADTLSSKLQAGDEVVHINEVTLSSSRKEAVSLVKGSYKTLRLVVRRDVCTDPGHADTGASNFVSPEHLTSGPQHRKAAWSGGV KLRLKHRRSEPAGRPHSWHTTKSGEKQPDASMMQISQGMIGPPWHQSYHSSSSTSDLSNYDHAYLRRSPDQCSSQGSMESLEPSGAYPPC HLSPAKSTGSIDQLSHFHNKRDSAYSSFSTSSSILEYPHPGISGRERSGSMDNTSARGGLLEGMRQADIRYVKTVYDTRRGVSAEYEVNS SALLLQGREARASANGQGYDKWSNIPRGKGVPPPSWSQQCPSSLETATDNLPPKVGAPLPPARSDSYAAFRHRERPSSWSSLDQKRLCRP QANSLGSLKSPFIEEQLHTVLEKSPENSPPVKPKHNYTQKAQPGQPLLPTSIYPVPSLEPHFAQVPQPSVSSNGMLYPALAKESGYIAPQ GACNKMATIDENGNQNGSGRPGFAFCQPLEHDLLSPVEKKPEATAKYVPSKVHFCSVPENEEDASLKRHLTPPQGNSPHSNERKSTHSNK PSSHPHSLKCPQAQAWQAGEDKRSSRLSEPWEGDFQEDHNANLWRRLEREGLGQSLSGNFGKTKSAFSSLQNIPESLRRHSSLELGRGTQ EGYPGGRPTCAVNTKAEDPGRKAAPDLGSHLDRQVSYPRPEGRTGASASFNSTDPSPEEPPAPSHPHTSSLGRRGPGPGSASALQGFQYG KPHCSVLEKVSKFEQREQGSQRPSVGGSGFGHNYRPHRTVSTSSTSGNDFEETKAHIRFSESAEPLGNGEQHFKNGELKLEEASRQPCGQ QLSGGASDSGRGPQRPDARLLRSQSTFQLSSEPEREPEWRDRPGSPESPLLDAPFSRAYRNSIKDAQSRVLGATSFRRRDLELGAPVASR SWRPRPSSAHVGLRSPEASASASPHTPRERHSVTPAEGDLARPVPPAARRGARRRLTPEQKKRSYSEPEKMNEVGIVEEAEPAPLGPQRN GMRFPESSVADRRRLFERDGKACSTLSLSGPELKQFQQSALADYIQRKTGKRPTSAAGCSLQEPGPLRERAQSAYLQPGPAALEGSGLAS ASSLSSLREPSLQPRREATLLPATVAETQQAPRDRSSSFAGGRRLGERRRGDLLSGANGGTRGTQRGDETPREPSSWGARAGKSMSAEDL LERSDVLAGPVHVRSRSSPATADKRQDVLLGQDSGFGLVKDPCYLAGPGSRSLSCSERGQEEMLPLFHHLTPRWGGSGCKAIGDSSVPSE CPGTLDHQRQASRTPCPRPPLAGTQGLVTDTRAAPLTPIGTPLPSAIPSGYCSQDGQTGRQPLPPYTPAMMHRSNGHTLTQPPGPRGCEG DGPEHGVEEGTRKRVSLPQWPPPSRAKWAHAAREDSLPEESSAPDFANLKHYQKQQSLPSLCSTSDPDTPLGAPSTPGRISLRISESVLR DSPPPHEDYEDEVFVRDPHPKATSSPTFEPLPPPPPPPPSQETPVYSMDDFPPPPPHTVCEAQLDSEDPEGPRPSFNKLSKVTIARERHM PGAAHVVGSQTLASRLQTSIKGSEAESTPPSFMSVHAQLAGSLGGQPAPIQTQSLSHDPVSGTQGLEKKVSPDPQKSSEDIRTEALAKEI VHQDKSLADILDPDSRLKTTMDLMEGLFPRDVNLLKENSVKRKAIQRTVSSSGCEGKRNEDKEAVSMLVNCPAYYSVSAPKAELLNKIKE MPAEVNEEEEQADVNEKKAELIGSLTHKLETLQEAKGSLLTDIKLNNALGEEVEALISELCKPNEFDKYRMFIGDLDKVVNLLLSLSGRL ARVENVLSGLGEDASNEERSSLYEKRKILAGQHEDARELKENLDRRERVVLGILANYLSEEQLQDYQHFVKMKSTLLIEQRKLDDKIKLG -------------------------------------------------------------- |
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Fusion Gene PPI Analysis for FAM160B1-SHROOM3 |
| Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in |
| Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
| Hgene | Hgene's interactors | Tgene | Tgene's interactors |
| - Retained PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
| - Lost PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
| - Retained PPIs, but lost function due to frame-shift fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Related Drugs for FAM160B1-SHROOM3 |
| Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.8 2021-05-08) |
| Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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Related Diseases for FAM160B1-SHROOM3 |
| Diseases associated with fusion partners. (DisGeNet 4.0) |
| Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
| Hgene | FAM160B1 | C0025202 | melanoma | 1 | CTD_human |
| Hgene | FAM160B1 | C0557874 | Global developmental delay | 1 | GENOMICS_ENGLAND |
| Hgene | FAM160B1 | C1842364 | Central hypotonia | 1 | GENOMICS_ENGLAND |
| Hgene | FAM160B1 | C3714756 | Intellectual Disability | 1 | GENOMICS_ENGLAND |
| Hgene | FAM160B1 | C4025871 | Abnormality of the face | 1 | GENOMICS_ENGLAND |
| Tgene | SHROOM3 | C0027794 | Neural Tube Defects | 1 | GENOMICS_ENGLAND |
| Tgene | SHROOM3 | C0266642 | Situs ambiguus | 1 | GENOMICS_ENGLAND |
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