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Fusion Gene Summary | |
Fusion Gene ORF analysis | |
Fusion Genomic Features | |
Fusion Protein Features | |
Fusion Gene Sequence | |
Fusion Gene PPI analysis | |
Related Drugs | |
Related Diseases |
Fusion gene:FAT3-RIN3 (FusionGDB2 ID:29394) |
Fusion Gene Summary for FAT3-RIN3 |
Fusion gene summary |
Fusion gene information | Fusion gene name: FAT3-RIN3 | Fusion gene ID: 29394 | Hgene | Tgene | Gene symbol | FAT3 | RIN3 | Gene ID | 120114 | 79890 |
Gene name | FAT atypical cadherin 3 | Ras and Rab interactor 3 | |
Synonyms | CDHF15|CDHR10|hFat3 | - | |
Cytomap | 11q14.3 | 14q32.12 | |
Type of gene | protein-coding | protein-coding | |
Description | protocadherin Fat 3FAT tumor suppressor homolog 3cadherin family member 15cadherin-related family member 10 | ras and Rab interactor 3RAB5 interacting protein 3ras interaction/interference protein 3 | |
Modification date | 20200313 | 20200320 | |
UniProtAcc | Q8TDW7 | . | |
Ensembl transtripts involved in fusion gene | ENST00000541502, ENST00000409404, ENST00000298047, ENST00000525166, ENST00000533797, ENST00000489716, | ENST00000216487, ENST00000418924, ENST00000557762, | |
Fusion gene scores | * DoF score | 10 X 9 X 3=270 | 15 X 16 X 7=1680 |
# samples | 10 | 18 | |
** MAII score | log2(10/270*10)=-1.43295940727611 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(18/1680*10)=-3.22239242133645 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
Context | PubMed: FAT3 [Title/Abstract] AND RIN3 [Title/Abstract] AND fusion [Title/Abstract] | ||
Most frequent breakpoint | FAT3(92088570)-RIN3(93081751), # samples:1 | ||
Anticipated loss of major functional domain due to fusion event. |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
Partner | Gene | GO ID | GO term | PubMed ID |
Fusion gene breakpoints across FAT3 (5'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
Fusion gene breakpoints across RIN3 (3'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Source | Disease | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
ChimerDB4 | STAD | TCGA-D7-A748 | FAT3 | chr11 | 92088570 | + | RIN3 | chr14 | 93081751 | + |
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Fusion Gene ORF analysis for FAT3-RIN3 |
Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
In-frame | ENST00000541502 | ENST00000216487 | FAT3 | chr11 | 92088570 | + | RIN3 | chr14 | 93081751 | + |
5CDS-3UTR | ENST00000541502 | ENST00000418924 | FAT3 | chr11 | 92088570 | + | RIN3 | chr14 | 93081751 | + |
5CDS-intron | ENST00000541502 | ENST00000557762 | FAT3 | chr11 | 92088570 | + | RIN3 | chr14 | 93081751 | + |
In-frame | ENST00000409404 | ENST00000216487 | FAT3 | chr11 | 92088570 | + | RIN3 | chr14 | 93081751 | + |
5CDS-3UTR | ENST00000409404 | ENST00000418924 | FAT3 | chr11 | 92088570 | + | RIN3 | chr14 | 93081751 | + |
5CDS-intron | ENST00000409404 | ENST00000557762 | FAT3 | chr11 | 92088570 | + | RIN3 | chr14 | 93081751 | + |
In-frame | ENST00000298047 | ENST00000216487 | FAT3 | chr11 | 92088570 | + | RIN3 | chr14 | 93081751 | + |
5CDS-3UTR | ENST00000298047 | ENST00000418924 | FAT3 | chr11 | 92088570 | + | RIN3 | chr14 | 93081751 | + |
5CDS-intron | ENST00000298047 | ENST00000557762 | FAT3 | chr11 | 92088570 | + | RIN3 | chr14 | 93081751 | + |
In-frame | ENST00000525166 | ENST00000216487 | FAT3 | chr11 | 92088570 | + | RIN3 | chr14 | 93081751 | + |
5CDS-3UTR | ENST00000525166 | ENST00000418924 | FAT3 | chr11 | 92088570 | + | RIN3 | chr14 | 93081751 | + |
5CDS-intron | ENST00000525166 | ENST00000557762 | FAT3 | chr11 | 92088570 | + | RIN3 | chr14 | 93081751 | + |
intron-3CDS | ENST00000533797 | ENST00000216487 | FAT3 | chr11 | 92088570 | + | RIN3 | chr14 | 93081751 | + |
intron-3UTR | ENST00000533797 | ENST00000418924 | FAT3 | chr11 | 92088570 | + | RIN3 | chr14 | 93081751 | + |
intron-intron | ENST00000533797 | ENST00000557762 | FAT3 | chr11 | 92088570 | + | RIN3 | chr14 | 93081751 | + |
intron-3CDS | ENST00000489716 | ENST00000216487 | FAT3 | chr11 | 92088570 | + | RIN3 | chr14 | 93081751 | + |
intron-3UTR | ENST00000489716 | ENST00000418924 | FAT3 | chr11 | 92088570 | + | RIN3 | chr14 | 93081751 | + |
intron-intron | ENST00000489716 | ENST00000557762 | FAT3 | chr11 | 92088570 | + | RIN3 | chr14 | 93081751 | + |
ORFfinder result based on the fusion transcript sequence of in-frame fusion genes. |
Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | Seq length (transcript) | BP loci (transcript) | Predicted start (transcript) | Predicted stop (transcript) | Seq length (amino acids) |
ENST00000541502 | FAT3 | chr11 | 92088570 | + | ENST00000216487 | RIN3 | chr14 | 93081751 | + | 6642 | 3309 | 17 | 5899 | 1960 |
ENST00000409404 | FAT3 | chr11 | 92088570 | + | ENST00000216487 | RIN3 | chr14 | 93081751 | + | 6642 | 3309 | 17 | 5899 | 1960 |
ENST00000298047 | FAT3 | chr11 | 92088570 | + | ENST00000216487 | RIN3 | chr14 | 93081751 | + | 6642 | 3309 | 17 | 5899 | 1960 |
ENST00000525166 | FAT3 | chr11 | 92088570 | + | ENST00000216487 | RIN3 | chr14 | 93081751 | + | 6197 | 2864 | 22 | 5454 | 1810 |
DeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated. |
Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | No-coding score | Coding score |
ENST00000541502 | ENST00000216487 | FAT3 | chr11 | 92088570 | + | RIN3 | chr14 | 93081751 | + | 0.000651892 | 0.9993481 |
ENST00000409404 | ENST00000216487 | FAT3 | chr11 | 92088570 | + | RIN3 | chr14 | 93081751 | + | 0.000651892 | 0.9993481 |
ENST00000298047 | ENST00000216487 | FAT3 | chr11 | 92088570 | + | RIN3 | chr14 | 93081751 | + | 0.000651892 | 0.9993481 |
ENST00000525166 | ENST00000216487 | FAT3 | chr11 | 92088570 | + | RIN3 | chr14 | 93081751 | + | 0.000714963 | 0.99928504 |
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Fusion Genomic Features for FAT3-RIN3 |
FusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints. |
Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | 1-p | p (fusion gene breakpoint) |
FAT3 | chr11 | 92088570 | + | RIN3 | chr14 | 93081751 | + | 0.003672383 | 0.9963276 |
FAT3 | chr11 | 92088570 | + | RIN3 | chr14 | 93081751 | + | 0.003672383 | 0.9963276 |
Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page. |
Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page. |
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Fusion Protein Features for FAT3-RIN3 |
Go to FGviewer for the breakpoints of chr11:92088570-chr14:93081751 - FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels. |
Main function of each fusion partner protein. (from UniProt) |
Hgene | Tgene |
FAT3 | . |
FUNCTION: May play a role in the interactions between neurites derived from specific subsets of neurons during development. {ECO:0000250}. | FUNCTION: Might normally function as a transcriptional repressor. EWS-fusion-proteins (EFPS) may play a role in the tumorigenic process. They may disturb gene expression by mimicking, or interfering with the normal function of CTD-POLII within the transcription initiation complex. They may also contribute to an aberrant activation of the fusion protein target genes. |
Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | FAT3 | chr11:92088570 | chr14:93081751 | ENST00000298047 | + | 1 | 27 | 159_266 | 1097.3333333333333 | 4590.0 | Domain | Cadherin 2 |
Hgene | FAT3 | chr11:92088570 | chr14:93081751 | ENST00000298047 | + | 1 | 27 | 264_375 | 1097.3333333333333 | 4590.0 | Domain | Cadherin 3 |
Hgene | FAT3 | chr11:92088570 | chr14:93081751 | ENST00000298047 | + | 1 | 27 | 377_472 | 1097.3333333333333 | 4590.0 | Domain | Cadherin 4 |
Hgene | FAT3 | chr11:92088570 | chr14:93081751 | ENST00000298047 | + | 1 | 27 | 44_158 | 1097.3333333333333 | 4590.0 | Domain | Cadherin 1 |
Hgene | FAT3 | chr11:92088570 | chr14:93081751 | ENST00000298047 | + | 1 | 27 | 473_578 | 1097.3333333333333 | 4590.0 | Domain | Cadherin 5 |
Hgene | FAT3 | chr11:92088570 | chr14:93081751 | ENST00000298047 | + | 1 | 27 | 579_681 | 1097.3333333333333 | 4590.0 | Domain | Cadherin 6 |
Hgene | FAT3 | chr11:92088570 | chr14:93081751 | ENST00000298047 | + | 1 | 27 | 727_831 | 1097.3333333333333 | 4590.0 | Domain | Cadherin 7 |
Hgene | FAT3 | chr11:92088570 | chr14:93081751 | ENST00000298047 | + | 1 | 27 | 832_936 | 1097.3333333333333 | 4590.0 | Domain | Cadherin 8 |
Hgene | FAT3 | chr11:92088570 | chr14:93081751 | ENST00000298047 | + | 1 | 27 | 937_1043 | 1097.3333333333333 | 4590.0 | Domain | Cadherin 9 |
Hgene | FAT3 | chr11:92088570 | chr14:93081751 | ENST00000409404 | + | 1 | 25 | 159_266 | 1097.3333333333333 | 4558.0 | Domain | Cadherin 2 |
Hgene | FAT3 | chr11:92088570 | chr14:93081751 | ENST00000409404 | + | 1 | 25 | 264_375 | 1097.3333333333333 | 4558.0 | Domain | Cadherin 3 |
Hgene | FAT3 | chr11:92088570 | chr14:93081751 | ENST00000409404 | + | 1 | 25 | 377_472 | 1097.3333333333333 | 4558.0 | Domain | Cadherin 4 |
Hgene | FAT3 | chr11:92088570 | chr14:93081751 | ENST00000409404 | + | 1 | 25 | 44_158 | 1097.3333333333333 | 4558.0 | Domain | Cadherin 1 |
Hgene | FAT3 | chr11:92088570 | chr14:93081751 | ENST00000409404 | + | 1 | 25 | 473_578 | 1097.3333333333333 | 4558.0 | Domain | Cadherin 5 |
Hgene | FAT3 | chr11:92088570 | chr14:93081751 | ENST00000409404 | + | 1 | 25 | 579_681 | 1097.3333333333333 | 4558.0 | Domain | Cadherin 6 |
Hgene | FAT3 | chr11:92088570 | chr14:93081751 | ENST00000409404 | + | 1 | 25 | 727_831 | 1097.3333333333333 | 4558.0 | Domain | Cadherin 7 |
Hgene | FAT3 | chr11:92088570 | chr14:93081751 | ENST00000409404 | + | 1 | 25 | 832_936 | 1097.3333333333333 | 4558.0 | Domain | Cadherin 8 |
Hgene | FAT3 | chr11:92088570 | chr14:93081751 | ENST00000409404 | + | 1 | 25 | 937_1043 | 1097.3333333333333 | 4558.0 | Domain | Cadherin 9 |
Tgene | RIN3 | chr11:92088570 | chr14:93081751 | ENST00000216487 | 2 | 10 | 248_514 | 122.33333333333333 | 986.0 | Compositional bias | Note=Pro-rich | |
Tgene | RIN3 | chr11:92088570 | chr14:93081751 | ENST00000216487 | 2 | 10 | 722_725 | 122.33333333333333 | 986.0 | Compositional bias | Note=Poly-Thr | |
Tgene | RIN3 | chr11:92088570 | chr14:93081751 | ENST00000216487 | 2 | 10 | 965_972 | 122.33333333333333 | 986.0 | Compositional bias | Note=Poly-Gly | |
Tgene | RIN3 | chr11:92088570 | chr14:93081751 | ENST00000216487 | 2 | 10 | 703_846 | 122.33333333333333 | 986.0 | Domain | VPS9 | |
Tgene | RIN3 | chr11:92088570 | chr14:93081751 | ENST00000216487 | 2 | 10 | 877_963 | 122.33333333333333 | 986.0 | Domain | Ras-associating |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | FAT3 | chr11:92088570 | chr14:93081751 | ENST00000298047 | + | 1 | 27 | 4406_4477 | 1097.3333333333333 | 4590.0 | Compositional bias | Note=Pro-rich |
Hgene | FAT3 | chr11:92088570 | chr14:93081751 | ENST00000409404 | + | 1 | 25 | 4406_4477 | 1097.3333333333333 | 4558.0 | Compositional bias | Note=Pro-rich |
Hgene | FAT3 | chr11:92088570 | chr14:93081751 | ENST00000298047 | + | 1 | 27 | 1044_1148 | 1097.3333333333333 | 4590.0 | Domain | Cadherin 10 |
Hgene | FAT3 | chr11:92088570 | chr14:93081751 | ENST00000298047 | + | 1 | 27 | 1149_1254 | 1097.3333333333333 | 4590.0 | Domain | Cadherin 11 |
Hgene | FAT3 | chr11:92088570 | chr14:93081751 | ENST00000298047 | + | 1 | 27 | 1255_1359 | 1097.3333333333333 | 4590.0 | Domain | Cadherin 12 |
Hgene | FAT3 | chr11:92088570 | chr14:93081751 | ENST00000298047 | + | 1 | 27 | 1363_1460 | 1097.3333333333333 | 4590.0 | Domain | Cadherin 13 |
Hgene | FAT3 | chr11:92088570 | chr14:93081751 | ENST00000298047 | + | 1 | 27 | 1461_1566 | 1097.3333333333333 | 4590.0 | Domain | Cadherin 14 |
Hgene | FAT3 | chr11:92088570 | chr14:93081751 | ENST00000298047 | + | 1 | 27 | 1567_1769 | 1097.3333333333333 | 4590.0 | Domain | Cadherin 15 |
Hgene | FAT3 | chr11:92088570 | chr14:93081751 | ENST00000298047 | + | 1 | 27 | 1770_1883 | 1097.3333333333333 | 4590.0 | Domain | Cadherin 16 |
Hgene | FAT3 | chr11:92088570 | chr14:93081751 | ENST00000298047 | + | 1 | 27 | 1884_1986 | 1097.3333333333333 | 4590.0 | Domain | Cadherin 17 |
Hgene | FAT3 | chr11:92088570 | chr14:93081751 | ENST00000298047 | + | 1 | 27 | 1983_2084 | 1097.3333333333333 | 4590.0 | Domain | Cadherin 18 |
Hgene | FAT3 | chr11:92088570 | chr14:93081751 | ENST00000298047 | + | 1 | 27 | 2085_2186 | 1097.3333333333333 | 4590.0 | Domain | Cadherin 19 |
Hgene | FAT3 | chr11:92088570 | chr14:93081751 | ENST00000298047 | + | 1 | 27 | 2187_2287 | 1097.3333333333333 | 4590.0 | Domain | Cadherin 20 |
Hgene | FAT3 | chr11:92088570 | chr14:93081751 | ENST00000298047 | + | 1 | 27 | 2288_2394 | 1097.3333333333333 | 4590.0 | Domain | Cadherin 21 |
Hgene | FAT3 | chr11:92088570 | chr14:93081751 | ENST00000298047 | + | 1 | 27 | 2395_2496 | 1097.3333333333333 | 4590.0 | Domain | Cadherin 22 |
Hgene | FAT3 | chr11:92088570 | chr14:93081751 | ENST00000298047 | + | 1 | 27 | 2497_2600 | 1097.3333333333333 | 4590.0 | Domain | Cadherin 23 |
Hgene | FAT3 | chr11:92088570 | chr14:93081751 | ENST00000298047 | + | 1 | 27 | 2601_2708 | 1097.3333333333333 | 4590.0 | Domain | Cadherin 24 |
Hgene | FAT3 | chr11:92088570 | chr14:93081751 | ENST00000298047 | + | 1 | 27 | 2709_2814 | 1097.3333333333333 | 4590.0 | Domain | Cadherin 25 |
Hgene | FAT3 | chr11:92088570 | chr14:93081751 | ENST00000298047 | + | 1 | 27 | 2815_2924 | 1097.3333333333333 | 4590.0 | Domain | Cadherin 26 |
Hgene | FAT3 | chr11:92088570 | chr14:93081751 | ENST00000298047 | + | 1 | 27 | 2925_3029 | 1097.3333333333333 | 4590.0 | Domain | Cadherin 27 |
Hgene | FAT3 | chr11:92088570 | chr14:93081751 | ENST00000298047 | + | 1 | 27 | 3030_3131 | 1097.3333333333333 | 4590.0 | Domain | Cadherin 28 |
Hgene | FAT3 | chr11:92088570 | chr14:93081751 | ENST00000298047 | + | 1 | 27 | 3132_3236 | 1097.3333333333333 | 4590.0 | Domain | Cadherin 29 |
Hgene | FAT3 | chr11:92088570 | chr14:93081751 | ENST00000298047 | + | 1 | 27 | 3237_3341 | 1097.3333333333333 | 4590.0 | Domain | Cadherin 30 |
Hgene | FAT3 | chr11:92088570 | chr14:93081751 | ENST00000298047 | + | 1 | 27 | 3342_3446 | 1097.3333333333333 | 4590.0 | Domain | Cadherin 31 |
Hgene | FAT3 | chr11:92088570 | chr14:93081751 | ENST00000298047 | + | 1 | 27 | 3447_3551 | 1097.3333333333333 | 4590.0 | Domain | Cadherin 32 |
Hgene | FAT3 | chr11:92088570 | chr14:93081751 | ENST00000298047 | + | 1 | 27 | 3552_3653 | 1097.3333333333333 | 4590.0 | Domain | Cadherin 33 |
Hgene | FAT3 | chr11:92088570 | chr14:93081751 | ENST00000298047 | + | 1 | 27 | 3795_3833 | 1097.3333333333333 | 4590.0 | Domain | EGF-like 1 |
Hgene | FAT3 | chr11:92088570 | chr14:93081751 | ENST00000298047 | + | 1 | 27 | 3835_4018 | 1097.3333333333333 | 4590.0 | Domain | Laminin G-like |
Hgene | FAT3 | chr11:92088570 | chr14:93081751 | ENST00000298047 | + | 1 | 27 | 4021_4058 | 1097.3333333333333 | 4590.0 | Domain | EGF-like 2 |
Hgene | FAT3 | chr11:92088570 | chr14:93081751 | ENST00000298047 | + | 1 | 27 | 4060_4096 | 1097.3333333333333 | 4590.0 | Domain | EGF-like 3 |
Hgene | FAT3 | chr11:92088570 | chr14:93081751 | ENST00000298047 | + | 1 | 27 | 4098_4134 | 1097.3333333333333 | 4590.0 | Domain | EGF-like 4%3B calcium-binding |
Hgene | FAT3 | chr11:92088570 | chr14:93081751 | ENST00000409404 | + | 1 | 25 | 1044_1148 | 1097.3333333333333 | 4558.0 | Domain | Cadherin 10 |
Hgene | FAT3 | chr11:92088570 | chr14:93081751 | ENST00000409404 | + | 1 | 25 | 1149_1254 | 1097.3333333333333 | 4558.0 | Domain | Cadherin 11 |
Hgene | FAT3 | chr11:92088570 | chr14:93081751 | ENST00000409404 | + | 1 | 25 | 1255_1359 | 1097.3333333333333 | 4558.0 | Domain | Cadherin 12 |
Hgene | FAT3 | chr11:92088570 | chr14:93081751 | ENST00000409404 | + | 1 | 25 | 1363_1460 | 1097.3333333333333 | 4558.0 | Domain | Cadherin 13 |
Hgene | FAT3 | chr11:92088570 | chr14:93081751 | ENST00000409404 | + | 1 | 25 | 1461_1566 | 1097.3333333333333 | 4558.0 | Domain | Cadherin 14 |
Hgene | FAT3 | chr11:92088570 | chr14:93081751 | ENST00000409404 | + | 1 | 25 | 1567_1769 | 1097.3333333333333 | 4558.0 | Domain | Cadherin 15 |
Hgene | FAT3 | chr11:92088570 | chr14:93081751 | ENST00000409404 | + | 1 | 25 | 1770_1883 | 1097.3333333333333 | 4558.0 | Domain | Cadherin 16 |
Hgene | FAT3 | chr11:92088570 | chr14:93081751 | ENST00000409404 | + | 1 | 25 | 1884_1986 | 1097.3333333333333 | 4558.0 | Domain | Cadherin 17 |
Hgene | FAT3 | chr11:92088570 | chr14:93081751 | ENST00000409404 | + | 1 | 25 | 1983_2084 | 1097.3333333333333 | 4558.0 | Domain | Cadherin 18 |
Hgene | FAT3 | chr11:92088570 | chr14:93081751 | ENST00000409404 | + | 1 | 25 | 2085_2186 | 1097.3333333333333 | 4558.0 | Domain | Cadherin 19 |
Hgene | FAT3 | chr11:92088570 | chr14:93081751 | ENST00000409404 | + | 1 | 25 | 2187_2287 | 1097.3333333333333 | 4558.0 | Domain | Cadherin 20 |
Hgene | FAT3 | chr11:92088570 | chr14:93081751 | ENST00000409404 | + | 1 | 25 | 2288_2394 | 1097.3333333333333 | 4558.0 | Domain | Cadherin 21 |
Hgene | FAT3 | chr11:92088570 | chr14:93081751 | ENST00000409404 | + | 1 | 25 | 2395_2496 | 1097.3333333333333 | 4558.0 | Domain | Cadherin 22 |
Hgene | FAT3 | chr11:92088570 | chr14:93081751 | ENST00000409404 | + | 1 | 25 | 2497_2600 | 1097.3333333333333 | 4558.0 | Domain | Cadherin 23 |
Hgene | FAT3 | chr11:92088570 | chr14:93081751 | ENST00000409404 | + | 1 | 25 | 2601_2708 | 1097.3333333333333 | 4558.0 | Domain | Cadherin 24 |
Hgene | FAT3 | chr11:92088570 | chr14:93081751 | ENST00000409404 | + | 1 | 25 | 2709_2814 | 1097.3333333333333 | 4558.0 | Domain | Cadherin 25 |
Hgene | FAT3 | chr11:92088570 | chr14:93081751 | ENST00000409404 | + | 1 | 25 | 2815_2924 | 1097.3333333333333 | 4558.0 | Domain | Cadherin 26 |
Hgene | FAT3 | chr11:92088570 | chr14:93081751 | ENST00000409404 | + | 1 | 25 | 2925_3029 | 1097.3333333333333 | 4558.0 | Domain | Cadherin 27 |
Hgene | FAT3 | chr11:92088570 | chr14:93081751 | ENST00000409404 | + | 1 | 25 | 3030_3131 | 1097.3333333333333 | 4558.0 | Domain | Cadherin 28 |
Hgene | FAT3 | chr11:92088570 | chr14:93081751 | ENST00000409404 | + | 1 | 25 | 3132_3236 | 1097.3333333333333 | 4558.0 | Domain | Cadherin 29 |
Hgene | FAT3 | chr11:92088570 | chr14:93081751 | ENST00000409404 | + | 1 | 25 | 3237_3341 | 1097.3333333333333 | 4558.0 | Domain | Cadherin 30 |
Hgene | FAT3 | chr11:92088570 | chr14:93081751 | ENST00000409404 | + | 1 | 25 | 3342_3446 | 1097.3333333333333 | 4558.0 | Domain | Cadherin 31 |
Hgene | FAT3 | chr11:92088570 | chr14:93081751 | ENST00000409404 | + | 1 | 25 | 3447_3551 | 1097.3333333333333 | 4558.0 | Domain | Cadherin 32 |
Hgene | FAT3 | chr11:92088570 | chr14:93081751 | ENST00000409404 | + | 1 | 25 | 3552_3653 | 1097.3333333333333 | 4558.0 | Domain | Cadherin 33 |
Hgene | FAT3 | chr11:92088570 | chr14:93081751 | ENST00000409404 | + | 1 | 25 | 3795_3833 | 1097.3333333333333 | 4558.0 | Domain | EGF-like 1 |
Hgene | FAT3 | chr11:92088570 | chr14:93081751 | ENST00000409404 | + | 1 | 25 | 3835_4018 | 1097.3333333333333 | 4558.0 | Domain | Laminin G-like |
Hgene | FAT3 | chr11:92088570 | chr14:93081751 | ENST00000409404 | + | 1 | 25 | 4021_4058 | 1097.3333333333333 | 4558.0 | Domain | EGF-like 2 |
Hgene | FAT3 | chr11:92088570 | chr14:93081751 | ENST00000409404 | + | 1 | 25 | 4060_4096 | 1097.3333333333333 | 4558.0 | Domain | EGF-like 3 |
Hgene | FAT3 | chr11:92088570 | chr14:93081751 | ENST00000409404 | + | 1 | 25 | 4098_4134 | 1097.3333333333333 | 4558.0 | Domain | EGF-like 4%3B calcium-binding |
Hgene | FAT3 | chr11:92088570 | chr14:93081751 | ENST00000298047 | + | 1 | 27 | 33_4154 | 1097.3333333333333 | 4590.0 | Topological domain | Extracellular |
Hgene | FAT3 | chr11:92088570 | chr14:93081751 | ENST00000298047 | + | 1 | 27 | 4176_4557 | 1097.3333333333333 | 4590.0 | Topological domain | Cytoplasmic |
Hgene | FAT3 | chr11:92088570 | chr14:93081751 | ENST00000409404 | + | 1 | 25 | 33_4154 | 1097.3333333333333 | 4558.0 | Topological domain | Extracellular |
Hgene | FAT3 | chr11:92088570 | chr14:93081751 | ENST00000409404 | + | 1 | 25 | 4176_4557 | 1097.3333333333333 | 4558.0 | Topological domain | Cytoplasmic |
Hgene | FAT3 | chr11:92088570 | chr14:93081751 | ENST00000298047 | + | 1 | 27 | 4155_4175 | 1097.3333333333333 | 4590.0 | Transmembrane | Helical |
Hgene | FAT3 | chr11:92088570 | chr14:93081751 | ENST00000409404 | + | 1 | 25 | 4155_4175 | 1097.3333333333333 | 4558.0 | Transmembrane | Helical |
Tgene | RIN3 | chr11:92088570 | chr14:93081751 | ENST00000216487 | 2 | 10 | 24_29 | 122.33333333333333 | 986.0 | Compositional bias | Note=Poly-Glu | |
Tgene | RIN3 | chr11:92088570 | chr14:93081751 | ENST00000216487 | 2 | 10 | 63_158 | 122.33333333333333 | 986.0 | Domain | SH2 |
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Fusion Gene Sequence for FAT3-RIN3 |
For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones. |
>In-frame_ENST00000541502_ENST00000216487_TCGA-D7-A748_FAT3_chr11_92088570_+_RIN3_chr14_93081751_length(transcript)=6642nt_BP=3309nt GATGGAAGTATGATGTGATGGATATAATTATGGGACACTGTGTGGGCACACGGCCTCCTGCTTGTTGCCTCATCCTCCTGCTTTTCAAGC TTTTGGCCACTGTCTCCCAGGGGCTGCCAGGGACTGGACCCCTGGGCTTCCACTTCACACATTCCATTTATAATGCTACCGTGTATGAGA ACTCAGCAGCAAGGACCTACGTCAACAGCCAGAGTAGAATGGGCATCACCTTAATAGATCTATCCTGGGATATCAAATACAGAATAGTGT CCGGAGACGAGGAAGGCTTTTTCAAAGCAGAGGAAGTCATCATTGCAGATTTCTGTTTTCTCAGAATAAGAACTAAAGGTGGCAATTCTG CCATATTAAATAGGGAAATCCAGGATAATTATTTATTGATAGTAAAAGGTTCTGTCAGAGGAGAGGATTTGGAAGCATGGACCAAAGTGA ATATACAGGTTTTAGATATGAATGATCTGAGACCTTTGTTTTCACCCACAACATACTCTGTTACCATAGCAGAAAGCACACCTCTAAGGA CTAGTGTTGCCCAGGTGACTGCAACAGACGCAGATATTGGTTCCAATGGAGAATTCTACTACTACTTTAAAAATAAAGTTGATCTCTTTT CAGTTCACCCCACGAGTGGTGTCATCTCCTTAAGTGGTCGATTAAATTATGATGAAAAGAATAGGTATGATCTGGAAATTTTGGCTGTGG ACCGGGGAATGAAACTGTATGGGAACAATGGAGTGAGCAGTACTGCAAAGCTTTATGTTCACATTGAGCGCATAAATGAACATGCCCCAA CAATCCATGTAGTCACTCATGTTCCTTTCTCGTTGGAAAAAGAGCCAACATATGCAGTGGTGACAGTTGATGACTTAGATGATGGAGCGA ATGGAGAGATCGAATCTGTTTCCATTGTGGCTGGGGATCCTTTAGATCAGTTCTTCCTGGCTAAGGAAGGAAAGTGGTTGAATGAGTACA AGATTAAGGAGAGGAAGCAGATTGACTGGGAGAGCTTTCCCTATGGCTACAATCTCACTCTTCAAGCAAAAGACAAGGGATCTCCTCAAA AATGTTCAGCATTAAAGGCAGTCTACATTGGCAACCCCACAAGAGACACTGTCCCCATTAGATTTGAAAAAGAAGTGTACGATGTGAGCA TAAGTGAATTTTCCCCTCCTGGTGTCGTGGTTGCTATAGTAAAATTAAGTCCTGAACCGATAGATGTGGAATACAAATTATCTCCTGGTG AGGATGCAGTGTACTTTAAAATTAATCCTCGGTCGGGTCTGATTGTTACAGCACGGCCACTGAATACTGTTAAGAAGGAGGTTTATAAAC TGGAGGTGACAAACAAGGAAGGAGATTTAAAAGCACAGGTCACCATCAGCATAGAAGATGCAAATGACCACACCCCAGAATTTCAGCAAC CACTGTATGATGCTTATGTGAATGAAAGTGTCCCAGTGGGAACCAGCGTTCTAACAGTTTCAGCTTCTGATAAGGATAAAGGAGAAAATG GGTACATCACCTATAGTATCGCTAGCCTGAATTTGTTACCATTTGTCATTAATCAGTTTACAGGTGTTATTAGCACAACTGAAGAACTGG ATTTTGAATCCTCCCCAGAAATTTACAGATTCATTGTTAGAGCCTCTGACTGGGGTTCACCATACCGCCATGAAAGTGAGGTCAATGTGA CTATTCGAATAGGAAATGTCAACGACAACAGCCCTCTCTTTGAAAAAGTGGCTTGCCAGGGAGTTATTTCATATGACTTTCCAGTTGGTG GTCACATCACAGCAGTCTCAGCGATCGATATCGATGAACTTGAACTTGTAAAGTACAAAATCATTTCTGGAAATGAACTTGGCTTCTTTT ATTTAAACCCAGATTCTGGTGTTTTACAGCTTAAAAAATCACTGACAAATTCTGGCATTAAAAATGGCAATTTTGCCCTCAGAATTACAG CAACTGATGGAGAGAATCTTGCAGACCCCATGTCTATTAACATTTCAGTCCTACATGGGAAAGTGTCTTCAAAGAGCTTCAGTTGCAGAG AAACTCGTGTGGCTCAAAAGCTGGCAGAGAAACTACTCATTAAGGCAAAAGCAAATGGGAAACTGAATCTGGAAGATGGATTTCTTGACT TTTATTCAATTAATAGACAGGGACCATATTTTGACAAGTCTTTTCCTTCTGATGTGGCTGTAAAGGAGGATCTGCCAGTTGGTGCTAACA TTCTGAAGATTAAAGCCTATGATGCCGACTCTGGCTTCAATGGAAAAGTGCTATTTACAATATCAGATGGAAATACGGATAGTTGCTTTA ATATTGATATGGAGACTGGGCAGCTTAAAGTCCTTATGCCCATGGATCGAGAACACACAGACCTCTATCTCCTTAATATCACCATCTATG ACTTAGGTAATCCACAGAAATCGTCATGGAGACTGCTGACCATCAATGTGGAGGATGCTAATGACAATAGCCCAGTTTTTATTCAAGACA GTTACTCAGTTAACATTCTTGAAAGTTCAGGCATTGGTACTGAAATCATTCAAGTGGAAGCCAGAGACAAAGACTTAGGTTCTAATGGTG AAGTGACTTACTCAGTCTTGACAGATACACAGCAGTTTGCCATCAATAGCTCAACTGGAATCGTTTATGTAGCCGACCAGTTGGACCGGG AATCCAAAGCCAATTATTCTTTGAAAATAGAAGCCAGGGACAAGGCAGAGAGTGGTCAGCAGCTGTTTTCAGTTGTCACTCTTAAAGTTT TTTTAGATGATGTCAATGACTGCTCCCCAGCTTTCATTCCCAGTAGCTATAGTGTGAAGGTTCTTGAAGATCTCCCTGTTGGCACTGTCA TTGCTTGGCTTGAGACCCATGATCCAGATCTTGGACTGGGGGGTCAAGTGCGCTATTCTTTGGTCAATGACTATAATGGGAGATTTGAAA TAGATAAAGCAAGTGGTGCCATCCGCTTGAGCAAAGAGCTTGATTATGAGAAACAGCAGTTCTATAACCTTACTGTGCGGGCCAAAGACA AAGGGCGGCCTGTCTCTCTGTCATCTGTTTCCTTTGTTGAGGTGGAAGTGGTGGATGTCAATGAAAACCTCCACACTCCCTATTTCCCAG ACTTTGCTGTTGTTGGATCTGTAAAGGAAAACTCACGCATTGGAACAAGCGTGCTGCAGGTGACTGCTCGAGATGAAGACTCCGGAAGGG ATGGAGAGATCCAGTACTCCATCAGGGATGGCAGTGGTCTTGGAAGGTTCAGTATAGACGACGAGAGTGTATTGTACCTGGAAGGCTCGG CTCTTGTGTTTGAGGACATCTTCAGATTGATTGCGTTCTACTGTGTCAGTAGAGACTTACTGCCCTTCACACTGCGGCTACCCCAGGCCA TCCTTGAGGCCAGCAGCTTCACGGACCTTGAGACCATCGCCAACCTGGGTCTGGGTTTCTGGGACTCCTCGCTGAATCCTCCACAAGAAA GAGGGAAGCCAGCAGAGCCCCCAAGAGACCGGGCCCCCGGATTCCCCCTAGTCTCCAGCCTCAGGCCCACAGCCCATGACGCAAACTGTG CCTGTGAAATCGAGCTGTCGGTAGGAAATGACCGCCTGTGGTTTGTGAATCCTATTTTCATCGAGGACTGCAGCAGCGCCCTGCCCACCG ACCAGCCACCTCTTGGAAATTGCCCTGCACGCCCTTTGCCGCCCACCTCTGATGCCACCTCACCCACCTCCAGGTGGGCCCCACGCCGCC CACCACCCCCTCCCCCAGTGCTGCCCCTGCAGCCCTGCAGCCCAGCCCAGCCCCCTGTGCTCCCTGCTCTTGCCCCCGCCCCTGCCTGTC CTTTGCCCACCTCTCCCCCAGTGCCTGCCCCCCACGTCACACCCCATGCCCCAGGTCCCCCAGACCATCCGAACCAGCCGCCCATGATGA CCTGCGAGAGACTCCCATGCCCCACTGCAGGCCTGGGCCCCCTCAGGGAGGAAGCGATGAAGCCAGGGGCAGCCTCCAGTCCCTTGCAGC AGGTCCCCGCCCCGCCACTGCCTGCGAAGAAGAACCTTCCCACTGCCCCTCCCAGACGCCGCGTTTCCGAGAGGGTGTCCTTAGAAGACC AAAGTCCGGGGATGGCGGCAGAGGGGGACCAGCTCAGCCTGCCTCCCCAAGGGACCTCAGACGGCCCTGAGGACACGCCCCGGGAGAGCA CGGAGCAAGGCCAGGACACAGAGGTGAAAGCCAGCGATCCTCACAGCATGCCAGAGCTGCCCAGGACAGCCAAACAACCCCCAGTCCCGC CCCCCAGGAAAAAACGGATCTCTCGACAACTGGCCTCGACCCTCCCAGCTCCCTTAGAGAACGCTGAGCTCTGCACACAGGCGATGGCCT TGGAGACACCCACGCCGGGTCCACCCAGAGAGGGCCAAAGCCCTGCTTCTCAGGCTGGGACTCAGCACCCTCCTGCCCAGGCCACTGCCC ATTCCCAGAGCTCTCCAGAGTTCAAGGGCTCCCTGGCCTCCCTCTCAGACAGCTTGGGGGTGTCTGTCATGGCCACCGACCAGGACTCCT ACTCCACCAGCAGCACGGAGGAGGAGCTGGAGCAGTTCAGCAGCCCCAGCGTGAAGAAGAAGCCCTCCATGATCCTGGGCAAGGCTCGGC ACCGGCTGAGCTTTGCCAGTTTCAGCAGCATGTTCCACGCTTTCCTCTCCAACAACCGCAAGCTGTACAAGAAGGTGGTGGAGCTGGCGC AGGACAAGGGCTCGTACTTTGGCAGCCTGGTGCAGGACTACAAGGTGTACAGCCTGGAGATGATGGCGCGCCAGACCTCCAGCACGGAGA TGCTGCAGGAGATTCGCACCATGATGACCCAGCTCAAGAGCTACCTGCTGCAGAGCACCGAGCTCAAGGCCCTGGTGGACCCCGCCCTGC ACTCCGAGGAGGAGCTCGAAGCAATTGTAGAGTCTGCCTTGTACAAATGTGTCCTGAAGCCCCTGAAGGAAGCCATCAACTCATGCCTGC ATCAGATCCACAGCAAGGATGGTTCGCTGCAGCAGCTCAAGGAGAACCAGTTAGTGATCCTGGCCACCACCACCACTGACCTAGGTGTGA CCACCAGCGTGCCGGAGGTGCCCATGATGGAGAAGATCCTGCAGAAGTTCACCAGCATGCACAAGGCCTACTCACCTGAGAAGAAGATCT CCATCCTGCTCAAGACCTGCAAACTCATCTACGACTCCATGGCCCTCGGCAACCCAGGGAAGCCCTATGGGGCGGATGACTTCCTGCCTG TGCTCATGTATGTGCTGGCCCGCAGCAACCTCACGGAGATGCTTCTCAATGTGGAGTACATGATGGAGCTCATGGACCCCGCCCTGCAGC TGGGGGAGGGTTCCTACTATCTGACCACCACCTACGGGGCCCTGGAGCACATCAAGAGCTACGACAAGATCACGGTGACCCGGCAGCTGA GTGTGGAGGTGCAGGACTCCATCCACCGCTGGGAGCGCCGGCGTACTCTCAACAAGGCCCGGGCCTCCCGCTCCTCCGTACAGGACTTCA TCTGCGTGTCGTACCTGGAGCCCGAGCAGCAGGCGCGGACGCTGGCGTCGCGGGCGGACACCCAGGCCCAGGCGCTGTGCGCGCAGTGCG CGGAGAAGTTCGCGGTGGAGCGGCCGCAGGCGCACCGGCTGTTCGTGCTGGTGGACGGGCGCTGCTTCCAGCTGGCGGACGACGCGCTGC CGCACTGCATCAAGGGCTACCTGCTGCGCAGCGAGCCCAAGCGCGACTTCCACTTTGTCTACCGGCCCCTGGACGGTGGTGGCGGCGGCG GCGGCGGGAGCCCGCCCTGCCTGGTGGTGCGGGAGCCCAACTTCCTGTGAGGCCCTCCCGGGGCGCCTCCCCTCACCCCCAGGCGCACGT CTGGCCCCGCCTCTGGCTGCGCACTCCCGACCGCGACGTCCACGCAGCAGAGGGACATGGGCCATTCCATGACGTGCCCAGGCCAACGTC GCAGGACAGTTGTGAAAATAACATGACGCTCGTCCAAGGCCACTTCCTGAGGGCAAGTCCTAATAGCCCTGAGACACCGAGACGGCATGT TCTTCATTAGACGGAAAGGGAAACTGAGGCTCAGGAGAGAGGCGCTCCAGGCCGCTGCAGCCAACAAACCGGCGCCCTCTTCACACGTAG CTCCTCAGGCCATTCCCCATGAGTCCCCCACACCCACCCCATCCTCGGTCTTTGCAAAGAAGGGCCCGAGCTTAGTTTCCCCAGGACTGG CCTAGGAAGGAGCACCGGCCACAGCTGCTCCCCGTGCCACTCAGGGTGGACCCAGCATCTCAGGAGCACCTCAGGGTGTCGGTTAAGAGA CAGGCCTCCACCCCTGCACCAGAGCCTGCTCTTAGCTCCCGGTGCCCCCAGACCCCGCAGCTCTGTGCCCGGCAAGAAGCAGCTAGACAC ACGCCAGGGCGCCAAGCACGGCCAGCTCCGCGGACCCATGGACAAGCCCAGCCCCGCCTCAGGGAAAACAGGGCCTTTCCCTACAGGACA >In-frame_ENST00000541502_ENST00000216487_TCGA-D7-A748_FAT3_chr11_92088570_+_RIN3_chr14_93081751_length(amino acids)=1960AA_start in transcript=17_stop in transcript=5899 MDIIMGHCVGTRPPACCLILLLFKLLATVSQGLPGTGPLGFHFTHSIYNATVYENSAARTYVNSQSRMGITLIDLSWDIKYRIVSGDEEG FFKAEEVIIADFCFLRIRTKGGNSAILNREIQDNYLLIVKGSVRGEDLEAWTKVNIQVLDMNDLRPLFSPTTYSVTIAESTPLRTSVAQV TATDADIGSNGEFYYYFKNKVDLFSVHPTSGVISLSGRLNYDEKNRYDLEILAVDRGMKLYGNNGVSSTAKLYVHIERINEHAPTIHVVT HVPFSLEKEPTYAVVTVDDLDDGANGEIESVSIVAGDPLDQFFLAKEGKWLNEYKIKERKQIDWESFPYGYNLTLQAKDKGSPQKCSALK AVYIGNPTRDTVPIRFEKEVYDVSISEFSPPGVVVAIVKLSPEPIDVEYKLSPGEDAVYFKINPRSGLIVTARPLNTVKKEVYKLEVTNK EGDLKAQVTISIEDANDHTPEFQQPLYDAYVNESVPVGTSVLTVSASDKDKGENGYITYSIASLNLLPFVINQFTGVISTTEELDFESSP EIYRFIVRASDWGSPYRHESEVNVTIRIGNVNDNSPLFEKVACQGVISYDFPVGGHITAVSAIDIDELELVKYKIISGNELGFFYLNPDS GVLQLKKSLTNSGIKNGNFALRITATDGENLADPMSINISVLHGKVSSKSFSCRETRVAQKLAEKLLIKAKANGKLNLEDGFLDFYSINR QGPYFDKSFPSDVAVKEDLPVGANILKIKAYDADSGFNGKVLFTISDGNTDSCFNIDMETGQLKVLMPMDREHTDLYLLNITIYDLGNPQ KSSWRLLTINVEDANDNSPVFIQDSYSVNILESSGIGTEIIQVEARDKDLGSNGEVTYSVLTDTQQFAINSSTGIVYVADQLDRESKANY SLKIEARDKAESGQQLFSVVTLKVFLDDVNDCSPAFIPSSYSVKVLEDLPVGTVIAWLETHDPDLGLGGQVRYSLVNDYNGRFEIDKASG AIRLSKELDYEKQQFYNLTVRAKDKGRPVSLSSVSFVEVEVVDVNENLHTPYFPDFAVVGSVKENSRIGTSVLQVTARDEDSGRDGEIQY SIRDGSGLGRFSIDDESVLYLEGSALVFEDIFRLIAFYCVSRDLLPFTLRLPQAILEASSFTDLETIANLGLGFWDSSLNPPQERGKPAE PPRDRAPGFPLVSSLRPTAHDANCACEIELSVGNDRLWFVNPIFIEDCSSALPTDQPPLGNCPARPLPPTSDATSPTSRWAPRRPPPPPP VLPLQPCSPAQPPVLPALAPAPACPLPTSPPVPAPHVTPHAPGPPDHPNQPPMMTCERLPCPTAGLGPLREEAMKPGAASSPLQQVPAPP LPAKKNLPTAPPRRRVSERVSLEDQSPGMAAEGDQLSLPPQGTSDGPEDTPRESTEQGQDTEVKASDPHSMPELPRTAKQPPVPPPRKKR ISRQLASTLPAPLENAELCTQAMALETPTPGPPREGQSPASQAGTQHPPAQATAHSQSSPEFKGSLASLSDSLGVSVMATDQDSYSTSST EEELEQFSSPSVKKKPSMILGKARHRLSFASFSSMFHAFLSNNRKLYKKVVELAQDKGSYFGSLVQDYKVYSLEMMARQTSSTEMLQEIR TMMTQLKSYLLQSTELKALVDPALHSEEELEAIVESALYKCVLKPLKEAINSCLHQIHSKDGSLQQLKENQLVILATTTTDLGVTTSVPE VPMMEKILQKFTSMHKAYSPEKKISILLKTCKLIYDSMALGNPGKPYGADDFLPVLMYVLARSNLTEMLLNVEYMMELMDPALQLGEGSY YLTTTYGALEHIKSYDKITVTRQLSVEVQDSIHRWERRRTLNKARASRSSVQDFICVSYLEPEQQARTLASRADTQAQALCAQCAEKFAV -------------------------------------------------------------- >In-frame_ENST00000409404_ENST00000216487_TCGA-D7-A748_FAT3_chr11_92088570_+_RIN3_chr14_93081751_length(transcript)=6642nt_BP=3309nt GATGGAAGTATGATGTGATGGATATAATTATGGGACACTGTGTGGGCACACGGCCTCCTGCTTGTTGCCTCATCCTCCTGCTTTTCAAGC TTTTGGCCACTGTCTCCCAGGGGCTGCCAGGGACTGGACCCCTGGGCTTCCACTTCACACATTCCATTTATAATGCTACCGTGTATGAGA ACTCAGCAGCAAGGACCTACGTCAACAGCCAGAGTAGAATGGGCATCACCTTAATAGATCTATCCTGGGATATCAAATACAGAATAGTGT CCGGAGACGAGGAAGGCTTTTTCAAAGCAGAGGAAGTCATCATTGCAGATTTCTGTTTTCTCAGAATAAGAACTAAAGGTGGCAATTCTG CCATATTAAATAGGGAAATCCAGGATAATTATTTATTGATAGTAAAAGGTTCTGTCAGAGGAGAGGATTTGGAAGCATGGACCAAAGTGA ATATACAGGTTTTAGATATGAATGATCTGAGACCTTTGTTTTCACCCACAACATACTCTGTTACCATAGCAGAAAGCACACCTCTAAGGA CTAGTGTTGCCCAGGTGACTGCAACAGACGCAGATATTGGTTCCAATGGAGAATTCTACTACTACTTTAAAAATAAAGTTGATCTCTTTT CAGTTCACCCCACGAGTGGTGTCATCTCCTTAAGTGGTCGATTAAATTATGATGAAAAGAATAGGTATGATCTGGAAATTTTGGCTGTGG ACCGGGGAATGAAACTGTATGGGAACAATGGAGTGAGCAGTACTGCAAAGCTTTATGTTCACATTGAGCGCATAAATGAACATGCCCCAA CAATCCATGTAGTCACTCATGTTCCTTTCTCGTTGGAAAAAGAGCCAACATATGCAGTGGTGACAGTTGATGACTTAGATGATGGAGCGA ATGGAGAGATCGAATCTGTTTCCATTGTGGCTGGGGATCCTTTAGATCAGTTCTTCCTGGCTAAGGAAGGAAAGTGGTTGAATGAGTACA AGATTAAGGAGAGGAAGCAGATTGACTGGGAGAGCTTTCCCTATGGCTACAATCTCACTCTTCAAGCAAAAGACAAGGGATCTCCTCAAA AATGTTCAGCATTAAAGGCAGTCTACATTGGCAACCCCACAAGAGACACTGTCCCCATTAGATTTGAAAAAGAAGTGTACGATGTGAGCA TAAGTGAATTTTCCCCTCCTGGTGTCGTGGTTGCTATAGTAAAATTAAGTCCTGAACCGATAGATGTGGAATACAAATTATCTCCTGGTG AGGATGCAGTGTACTTTAAAATTAATCCTCGGTCGGGTCTGATTGTTACAGCACGGCCACTGAATACTGTTAAGAAGGAGGTTTATAAAC TGGAGGTGACAAACAAGGAAGGAGATTTAAAAGCACAGGTCACCATCAGCATAGAAGATGCAAATGACCACACCCCAGAATTTCAGCAAC CACTGTATGATGCTTATGTGAATGAAAGTGTCCCAGTGGGAACCAGCGTTCTAACAGTTTCAGCTTCTGATAAGGATAAAGGAGAAAATG GGTACATCACCTATAGTATCGCTAGCCTGAATTTGTTACCATTTGTCATTAATCAGTTTACAGGTGTTATTAGCACAACTGAAGAACTGG ATTTTGAATCCTCCCCAGAAATTTACAGATTCATTGTTAGAGCCTCTGACTGGGGTTCACCATACCGCCATGAAAGTGAGGTCAATGTGA CTATTCGAATAGGAAATGTCAACGACAACAGCCCTCTCTTTGAAAAAGTGGCTTGCCAGGGAGTTATTTCATATGACTTTCCAGTTGGTG GTCACATCACAGCAGTCTCAGCGATCGATATCGATGAACTTGAACTTGTAAAGTACAAAATCATTTCTGGAAATGAACTTGGCTTCTTTT ATTTAAACCCAGATTCTGGTGTTTTACAGCTTAAAAAATCACTGACAAATTCTGGCATTAAAAATGGCAATTTTGCCCTCAGAATTACAG CAACTGATGGAGAGAATCTTGCAGACCCCATGTCTATTAACATTTCAGTCCTACATGGGAAAGTGTCTTCAAAGAGCTTCAGTTGCAGAG AAACTCGTGTGGCTCAAAAGCTGGCAGAGAAACTACTCATTAAGGCAAAAGCAAATGGGAAACTGAATCTGGAAGATGGATTTCTTGACT TTTATTCAATTAATAGACAGGGACCATATTTTGACAAGTCTTTTCCTTCTGATGTGGCTGTAAAGGAGGATCTGCCAGTTGGTGCTAACA TTCTGAAGATTAAAGCCTATGATGCCGACTCTGGCTTCAATGGAAAAGTGCTATTTACAATATCAGATGGAAATACGGATAGTTGCTTTA ATATTGATATGGAGACTGGGCAGCTTAAAGTCCTTATGCCCATGGATCGAGAACACACAGACCTCTATCTCCTTAATATCACCATCTATG ACTTAGGTAATCCACAGAAATCGTCATGGAGACTGCTGACCATCAATGTGGAGGATGCTAATGACAATAGCCCAGTTTTTATTCAAGACA GTTACTCAGTTAACATTCTTGAAAGTTCAGGCATTGGTACTGAAATCATTCAAGTGGAAGCCAGAGACAAAGACTTAGGTTCTAATGGTG AAGTGACTTACTCAGTCTTGACAGATACACAGCAGTTTGCCATCAATAGCTCAACTGGAATCGTTTATGTAGCCGACCAGTTGGACCGGG AATCCAAAGCCAATTATTCTTTGAAAATAGAAGCCAGGGACAAGGCAGAGAGTGGTCAGCAGCTGTTTTCAGTTGTCACTCTTAAAGTTT TTTTAGATGATGTCAATGACTGCTCCCCAGCTTTCATTCCCAGTAGCTATAGTGTGAAGGTTCTTGAAGATCTCCCTGTTGGCACTGTCA TTGCTTGGCTTGAGACCCATGATCCAGATCTTGGACTGGGGGGTCAAGTGCGCTATTCTTTGGTCAATGACTATAATGGGAGATTTGAAA TAGATAAAGCAAGTGGTGCCATCCGCTTGAGCAAAGAGCTTGATTATGAGAAACAGCAGTTCTATAACCTTACTGTGCGGGCCAAAGACA AAGGGCGGCCTGTCTCTCTGTCATCTGTTTCCTTTGTTGAGGTGGAAGTGGTGGATGTCAATGAAAACCTCCACACTCCCTATTTCCCAG ACTTTGCTGTTGTTGGATCTGTAAAGGAAAACTCACGCATTGGAACAAGCGTGCTGCAGGTGACTGCTCGAGATGAAGACTCCGGAAGGG ATGGAGAGATCCAGTACTCCATCAGGGATGGCAGTGGTCTTGGAAGGTTCAGTATAGACGACGAGAGTGTATTGTACCTGGAAGGCTCGG CTCTTGTGTTTGAGGACATCTTCAGATTGATTGCGTTCTACTGTGTCAGTAGAGACTTACTGCCCTTCACACTGCGGCTACCCCAGGCCA TCCTTGAGGCCAGCAGCTTCACGGACCTTGAGACCATCGCCAACCTGGGTCTGGGTTTCTGGGACTCCTCGCTGAATCCTCCACAAGAAA GAGGGAAGCCAGCAGAGCCCCCAAGAGACCGGGCCCCCGGATTCCCCCTAGTCTCCAGCCTCAGGCCCACAGCCCATGACGCAAACTGTG CCTGTGAAATCGAGCTGTCGGTAGGAAATGACCGCCTGTGGTTTGTGAATCCTATTTTCATCGAGGACTGCAGCAGCGCCCTGCCCACCG ACCAGCCACCTCTTGGAAATTGCCCTGCACGCCCTTTGCCGCCCACCTCTGATGCCACCTCACCCACCTCCAGGTGGGCCCCACGCCGCC CACCACCCCCTCCCCCAGTGCTGCCCCTGCAGCCCTGCAGCCCAGCCCAGCCCCCTGTGCTCCCTGCTCTTGCCCCCGCCCCTGCCTGTC CTTTGCCCACCTCTCCCCCAGTGCCTGCCCCCCACGTCACACCCCATGCCCCAGGTCCCCCAGACCATCCGAACCAGCCGCCCATGATGA CCTGCGAGAGACTCCCATGCCCCACTGCAGGCCTGGGCCCCCTCAGGGAGGAAGCGATGAAGCCAGGGGCAGCCTCCAGTCCCTTGCAGC AGGTCCCCGCCCCGCCACTGCCTGCGAAGAAGAACCTTCCCACTGCCCCTCCCAGACGCCGCGTTTCCGAGAGGGTGTCCTTAGAAGACC AAAGTCCGGGGATGGCGGCAGAGGGGGACCAGCTCAGCCTGCCTCCCCAAGGGACCTCAGACGGCCCTGAGGACACGCCCCGGGAGAGCA CGGAGCAAGGCCAGGACACAGAGGTGAAAGCCAGCGATCCTCACAGCATGCCAGAGCTGCCCAGGACAGCCAAACAACCCCCAGTCCCGC CCCCCAGGAAAAAACGGATCTCTCGACAACTGGCCTCGACCCTCCCAGCTCCCTTAGAGAACGCTGAGCTCTGCACACAGGCGATGGCCT TGGAGACACCCACGCCGGGTCCACCCAGAGAGGGCCAAAGCCCTGCTTCTCAGGCTGGGACTCAGCACCCTCCTGCCCAGGCCACTGCCC ATTCCCAGAGCTCTCCAGAGTTCAAGGGCTCCCTGGCCTCCCTCTCAGACAGCTTGGGGGTGTCTGTCATGGCCACCGACCAGGACTCCT ACTCCACCAGCAGCACGGAGGAGGAGCTGGAGCAGTTCAGCAGCCCCAGCGTGAAGAAGAAGCCCTCCATGATCCTGGGCAAGGCTCGGC ACCGGCTGAGCTTTGCCAGTTTCAGCAGCATGTTCCACGCTTTCCTCTCCAACAACCGCAAGCTGTACAAGAAGGTGGTGGAGCTGGCGC AGGACAAGGGCTCGTACTTTGGCAGCCTGGTGCAGGACTACAAGGTGTACAGCCTGGAGATGATGGCGCGCCAGACCTCCAGCACGGAGA TGCTGCAGGAGATTCGCACCATGATGACCCAGCTCAAGAGCTACCTGCTGCAGAGCACCGAGCTCAAGGCCCTGGTGGACCCCGCCCTGC ACTCCGAGGAGGAGCTCGAAGCAATTGTAGAGTCTGCCTTGTACAAATGTGTCCTGAAGCCCCTGAAGGAAGCCATCAACTCATGCCTGC ATCAGATCCACAGCAAGGATGGTTCGCTGCAGCAGCTCAAGGAGAACCAGTTAGTGATCCTGGCCACCACCACCACTGACCTAGGTGTGA CCACCAGCGTGCCGGAGGTGCCCATGATGGAGAAGATCCTGCAGAAGTTCACCAGCATGCACAAGGCCTACTCACCTGAGAAGAAGATCT CCATCCTGCTCAAGACCTGCAAACTCATCTACGACTCCATGGCCCTCGGCAACCCAGGGAAGCCCTATGGGGCGGATGACTTCCTGCCTG TGCTCATGTATGTGCTGGCCCGCAGCAACCTCACGGAGATGCTTCTCAATGTGGAGTACATGATGGAGCTCATGGACCCCGCCCTGCAGC TGGGGGAGGGTTCCTACTATCTGACCACCACCTACGGGGCCCTGGAGCACATCAAGAGCTACGACAAGATCACGGTGACCCGGCAGCTGA GTGTGGAGGTGCAGGACTCCATCCACCGCTGGGAGCGCCGGCGTACTCTCAACAAGGCCCGGGCCTCCCGCTCCTCCGTACAGGACTTCA TCTGCGTGTCGTACCTGGAGCCCGAGCAGCAGGCGCGGACGCTGGCGTCGCGGGCGGACACCCAGGCCCAGGCGCTGTGCGCGCAGTGCG CGGAGAAGTTCGCGGTGGAGCGGCCGCAGGCGCACCGGCTGTTCGTGCTGGTGGACGGGCGCTGCTTCCAGCTGGCGGACGACGCGCTGC CGCACTGCATCAAGGGCTACCTGCTGCGCAGCGAGCCCAAGCGCGACTTCCACTTTGTCTACCGGCCCCTGGACGGTGGTGGCGGCGGCG GCGGCGGGAGCCCGCCCTGCCTGGTGGTGCGGGAGCCCAACTTCCTGTGAGGCCCTCCCGGGGCGCCTCCCCTCACCCCCAGGCGCACGT CTGGCCCCGCCTCTGGCTGCGCACTCCCGACCGCGACGTCCACGCAGCAGAGGGACATGGGCCATTCCATGACGTGCCCAGGCCAACGTC GCAGGACAGTTGTGAAAATAACATGACGCTCGTCCAAGGCCACTTCCTGAGGGCAAGTCCTAATAGCCCTGAGACACCGAGACGGCATGT TCTTCATTAGACGGAAAGGGAAACTGAGGCTCAGGAGAGAGGCGCTCCAGGCCGCTGCAGCCAACAAACCGGCGCCCTCTTCACACGTAG CTCCTCAGGCCATTCCCCATGAGTCCCCCACACCCACCCCATCCTCGGTCTTTGCAAAGAAGGGCCCGAGCTTAGTTTCCCCAGGACTGG CCTAGGAAGGAGCACCGGCCACAGCTGCTCCCCGTGCCACTCAGGGTGGACCCAGCATCTCAGGAGCACCTCAGGGTGTCGGTTAAGAGA CAGGCCTCCACCCCTGCACCAGAGCCTGCTCTTAGCTCCCGGTGCCCCCAGACCCCGCAGCTCTGTGCCCGGCAAGAAGCAGCTAGACAC ACGCCAGGGCGCCAAGCACGGCCAGCTCCGCGGACCCATGGACAAGCCCAGCCCCGCCTCAGGGAAAACAGGGCCTTTCCCTACAGGACA >In-frame_ENST00000409404_ENST00000216487_TCGA-D7-A748_FAT3_chr11_92088570_+_RIN3_chr14_93081751_length(amino acids)=1960AA_start in transcript=17_stop in transcript=5899 MDIIMGHCVGTRPPACCLILLLFKLLATVSQGLPGTGPLGFHFTHSIYNATVYENSAARTYVNSQSRMGITLIDLSWDIKYRIVSGDEEG FFKAEEVIIADFCFLRIRTKGGNSAILNREIQDNYLLIVKGSVRGEDLEAWTKVNIQVLDMNDLRPLFSPTTYSVTIAESTPLRTSVAQV TATDADIGSNGEFYYYFKNKVDLFSVHPTSGVISLSGRLNYDEKNRYDLEILAVDRGMKLYGNNGVSSTAKLYVHIERINEHAPTIHVVT HVPFSLEKEPTYAVVTVDDLDDGANGEIESVSIVAGDPLDQFFLAKEGKWLNEYKIKERKQIDWESFPYGYNLTLQAKDKGSPQKCSALK AVYIGNPTRDTVPIRFEKEVYDVSISEFSPPGVVVAIVKLSPEPIDVEYKLSPGEDAVYFKINPRSGLIVTARPLNTVKKEVYKLEVTNK EGDLKAQVTISIEDANDHTPEFQQPLYDAYVNESVPVGTSVLTVSASDKDKGENGYITYSIASLNLLPFVINQFTGVISTTEELDFESSP EIYRFIVRASDWGSPYRHESEVNVTIRIGNVNDNSPLFEKVACQGVISYDFPVGGHITAVSAIDIDELELVKYKIISGNELGFFYLNPDS GVLQLKKSLTNSGIKNGNFALRITATDGENLADPMSINISVLHGKVSSKSFSCRETRVAQKLAEKLLIKAKANGKLNLEDGFLDFYSINR QGPYFDKSFPSDVAVKEDLPVGANILKIKAYDADSGFNGKVLFTISDGNTDSCFNIDMETGQLKVLMPMDREHTDLYLLNITIYDLGNPQ KSSWRLLTINVEDANDNSPVFIQDSYSVNILESSGIGTEIIQVEARDKDLGSNGEVTYSVLTDTQQFAINSSTGIVYVADQLDRESKANY SLKIEARDKAESGQQLFSVVTLKVFLDDVNDCSPAFIPSSYSVKVLEDLPVGTVIAWLETHDPDLGLGGQVRYSLVNDYNGRFEIDKASG AIRLSKELDYEKQQFYNLTVRAKDKGRPVSLSSVSFVEVEVVDVNENLHTPYFPDFAVVGSVKENSRIGTSVLQVTARDEDSGRDGEIQY SIRDGSGLGRFSIDDESVLYLEGSALVFEDIFRLIAFYCVSRDLLPFTLRLPQAILEASSFTDLETIANLGLGFWDSSLNPPQERGKPAE PPRDRAPGFPLVSSLRPTAHDANCACEIELSVGNDRLWFVNPIFIEDCSSALPTDQPPLGNCPARPLPPTSDATSPTSRWAPRRPPPPPP VLPLQPCSPAQPPVLPALAPAPACPLPTSPPVPAPHVTPHAPGPPDHPNQPPMMTCERLPCPTAGLGPLREEAMKPGAASSPLQQVPAPP LPAKKNLPTAPPRRRVSERVSLEDQSPGMAAEGDQLSLPPQGTSDGPEDTPRESTEQGQDTEVKASDPHSMPELPRTAKQPPVPPPRKKR ISRQLASTLPAPLENAELCTQAMALETPTPGPPREGQSPASQAGTQHPPAQATAHSQSSPEFKGSLASLSDSLGVSVMATDQDSYSTSST EEELEQFSSPSVKKKPSMILGKARHRLSFASFSSMFHAFLSNNRKLYKKVVELAQDKGSYFGSLVQDYKVYSLEMMARQTSSTEMLQEIR TMMTQLKSYLLQSTELKALVDPALHSEEELEAIVESALYKCVLKPLKEAINSCLHQIHSKDGSLQQLKENQLVILATTTTDLGVTTSVPE VPMMEKILQKFTSMHKAYSPEKKISILLKTCKLIYDSMALGNPGKPYGADDFLPVLMYVLARSNLTEMLLNVEYMMELMDPALQLGEGSY YLTTTYGALEHIKSYDKITVTRQLSVEVQDSIHRWERRRTLNKARASRSSVQDFICVSYLEPEQQARTLASRADTQAQALCAQCAEKFAV -------------------------------------------------------------- >In-frame_ENST00000298047_ENST00000216487_TCGA-D7-A748_FAT3_chr11_92088570_+_RIN3_chr14_93081751_length(transcript)=6642nt_BP=3309nt GATGGAAGTATGATGTGATGGATATAATTATGGGACACTGTGTGGGCACACGGCCTCCTGCTTGTTGCCTCATCCTCCTGCTTTTCAAGC TTTTGGCCACTGTCTCCCAGGGGCTGCCAGGGACTGGACCCCTGGGCTTCCACTTCACACATTCCATTTATAATGCTACCGTGTATGAGA ACTCAGCAGCAAGGACCTACGTCAACAGCCAGAGTAGAATGGGCATCACCTTAATAGATCTATCCTGGGATATCAAATACAGAATAGTGT CCGGAGACGAGGAAGGCTTTTTCAAAGCAGAGGAAGTCATCATTGCAGATTTCTGTTTTCTCAGAATAAGAACTAAAGGTGGCAATTCTG CCATATTAAATAGGGAAATCCAGGATAATTATTTATTGATAGTAAAAGGTTCTGTCAGAGGAGAGGATTTGGAAGCATGGACCAAAGTGA ATATACAGGTTTTAGATATGAATGATCTGAGACCTTTGTTTTCACCCACAACATACTCTGTTACCATAGCAGAAAGCACACCTCTAAGGA CTAGTGTTGCCCAGGTGACTGCAACAGACGCAGATATTGGTTCCAATGGAGAATTCTACTACTACTTTAAAAATAAAGTTGATCTCTTTT CAGTTCACCCCACGAGTGGTGTCATCTCCTTAAGTGGTCGATTAAATTATGATGAAAAGAATAGGTATGATCTGGAAATTTTGGCTGTGG ACCGGGGAATGAAACTGTATGGGAACAATGGAGTGAGCAGTACTGCAAAGCTTTATGTTCACATTGAGCGCATAAATGAACATGCCCCAA CAATCCATGTAGTCACTCATGTTCCTTTCTCGTTGGAAAAAGAGCCAACATATGCAGTGGTGACAGTTGATGACTTAGATGATGGAGCGA ATGGAGAGATCGAATCTGTTTCCATTGTGGCTGGGGATCCTTTAGATCAGTTCTTCCTGGCTAAGGAAGGAAAGTGGTTGAATGAGTACA AGATTAAGGAGAGGAAGCAGATTGACTGGGAGAGCTTTCCCTATGGCTACAATCTCACTCTTCAAGCAAAAGACAAGGGATCTCCTCAAA AATGTTCAGCATTAAAGGCAGTCTACATTGGCAACCCCACAAGAGACACTGTCCCCATTAGATTTGAAAAAGAAGTGTACGATGTGAGCA TAAGTGAATTTTCCCCTCCTGGTGTCGTGGTTGCTATAGTAAAATTAAGTCCTGAACCGATAGATGTGGAATACAAATTATCTCCTGGTG AGGATGCAGTGTACTTTAAAATTAATCCTCGGTCGGGTCTGATTGTTACAGCACGGCCACTGAATACTGTTAAGAAGGAGGTTTATAAAC TGGAGGTGACAAACAAGGAAGGAGATTTAAAAGCACAGGTCACCATCAGCATAGAAGATGCAAATGACCACACCCCAGAATTTCAGCAAC CACTGTATGATGCTTATGTGAATGAAAGTGTCCCAGTGGGAACCAGCGTTCTAACAGTTTCAGCTTCTGATAAGGATAAAGGAGAAAATG GGTACATCACCTATAGTATCGCTAGCCTGAATTTGTTACCATTTGTCATTAATCAGTTTACAGGTGTTATTAGCACAACTGAAGAACTGG ATTTTGAATCCTCCCCAGAAATTTACAGATTCATTGTTAGAGCCTCTGACTGGGGTTCACCATACCGCCATGAAAGTGAGGTCAATGTGA CTATTCGAATAGGAAATGTCAACGACAACAGCCCTCTCTTTGAAAAAGTGGCTTGCCAGGGAGTTATTTCATATGACTTTCCAGTTGGTG GTCACATCACAGCAGTCTCAGCGATCGATATCGATGAACTTGAACTTGTAAAGTACAAAATCATTTCTGGAAATGAACTTGGCTTCTTTT ATTTAAACCCAGATTCTGGTGTTTTACAGCTTAAAAAATCACTGACAAATTCTGGCATTAAAAATGGCAATTTTGCCCTCAGAATTACAG CAACTGATGGAGAGAATCTTGCAGACCCCATGTCTATTAACATTTCAGTCCTACATGGGAAAGTGTCTTCAAAGAGCTTCAGTTGCAGAG AAACTCGTGTGGCTCAAAAGCTGGCAGAGAAACTACTCATTAAGGCAAAAGCAAATGGGAAACTGAATCTGGAAGATGGATTTCTTGACT TTTATTCAATTAATAGACAGGGACCATATTTTGACAAGTCTTTTCCTTCTGATGTGGCTGTAAAGGAGGATCTGCCAGTTGGTGCTAACA TTCTGAAGATTAAAGCCTATGATGCCGACTCTGGCTTCAATGGAAAAGTGCTATTTACAATATCAGATGGAAATACGGATAGTTGCTTTA ATATTGATATGGAGACTGGGCAGCTTAAAGTCCTTATGCCCATGGATCGAGAACACACAGACCTCTATCTCCTTAATATCACCATCTATG ACTTAGGTAATCCACAGAAATCGTCATGGAGACTGCTGACCATCAATGTGGAGGATGCTAATGACAATAGCCCAGTTTTTATTCAAGACA GTTACTCAGTTAACATTCTTGAAAGTTCAGGCATTGGTACTGAAATCATTCAAGTGGAAGCCAGAGACAAAGACTTAGGTTCTAATGGTG AAGTGACTTACTCAGTCTTGACAGATACACAGCAGTTTGCCATCAATAGCTCAACTGGAATCGTTTATGTAGCCGACCAGTTGGACCGGG AATCCAAAGCCAATTATTCTTTGAAAATAGAAGCCAGGGACAAGGCAGAGAGTGGTCAGCAGCTGTTTTCAGTTGTCACTCTTAAAGTTT TTTTAGATGATGTCAATGACTGCTCCCCAGCTTTCATTCCCAGTAGCTATAGTGTGAAGGTTCTTGAAGATCTCCCTGTTGGCACTGTCA TTGCTTGGCTTGAGACCCATGATCCAGATCTTGGACTGGGGGGTCAAGTGCGCTATTCTTTGGTCAATGACTATAATGGGAGATTTGAAA TAGATAAAGCAAGTGGTGCCATCCGCTTGAGCAAAGAGCTTGATTATGAGAAACAGCAGTTCTATAACCTTACTGTGCGGGCCAAAGACA AAGGGCGGCCTGTCTCTCTGTCATCTGTTTCCTTTGTTGAGGTGGAAGTGGTGGATGTCAATGAAAACCTCCACACTCCCTATTTCCCAG ACTTTGCTGTTGTTGGATCTGTAAAGGAAAACTCACGCATTGGAACAAGCGTGCTGCAGGTGACTGCTCGAGATGAAGACTCCGGAAGGG ATGGAGAGATCCAGTACTCCATCAGGGATGGCAGTGGTCTTGGAAGGTTCAGTATAGACGACGAGAGTGTATTGTACCTGGAAGGCTCGG CTCTTGTGTTTGAGGACATCTTCAGATTGATTGCGTTCTACTGTGTCAGTAGAGACTTACTGCCCTTCACACTGCGGCTACCCCAGGCCA TCCTTGAGGCCAGCAGCTTCACGGACCTTGAGACCATCGCCAACCTGGGTCTGGGTTTCTGGGACTCCTCGCTGAATCCTCCACAAGAAA GAGGGAAGCCAGCAGAGCCCCCAAGAGACCGGGCCCCCGGATTCCCCCTAGTCTCCAGCCTCAGGCCCACAGCCCATGACGCAAACTGTG CCTGTGAAATCGAGCTGTCGGTAGGAAATGACCGCCTGTGGTTTGTGAATCCTATTTTCATCGAGGACTGCAGCAGCGCCCTGCCCACCG ACCAGCCACCTCTTGGAAATTGCCCTGCACGCCCTTTGCCGCCCACCTCTGATGCCACCTCACCCACCTCCAGGTGGGCCCCACGCCGCC CACCACCCCCTCCCCCAGTGCTGCCCCTGCAGCCCTGCAGCCCAGCCCAGCCCCCTGTGCTCCCTGCTCTTGCCCCCGCCCCTGCCTGTC CTTTGCCCACCTCTCCCCCAGTGCCTGCCCCCCACGTCACACCCCATGCCCCAGGTCCCCCAGACCATCCGAACCAGCCGCCCATGATGA CCTGCGAGAGACTCCCATGCCCCACTGCAGGCCTGGGCCCCCTCAGGGAGGAAGCGATGAAGCCAGGGGCAGCCTCCAGTCCCTTGCAGC AGGTCCCCGCCCCGCCACTGCCTGCGAAGAAGAACCTTCCCACTGCCCCTCCCAGACGCCGCGTTTCCGAGAGGGTGTCCTTAGAAGACC AAAGTCCGGGGATGGCGGCAGAGGGGGACCAGCTCAGCCTGCCTCCCCAAGGGACCTCAGACGGCCCTGAGGACACGCCCCGGGAGAGCA CGGAGCAAGGCCAGGACACAGAGGTGAAAGCCAGCGATCCTCACAGCATGCCAGAGCTGCCCAGGACAGCCAAACAACCCCCAGTCCCGC CCCCCAGGAAAAAACGGATCTCTCGACAACTGGCCTCGACCCTCCCAGCTCCCTTAGAGAACGCTGAGCTCTGCACACAGGCGATGGCCT TGGAGACACCCACGCCGGGTCCACCCAGAGAGGGCCAAAGCCCTGCTTCTCAGGCTGGGACTCAGCACCCTCCTGCCCAGGCCACTGCCC ATTCCCAGAGCTCTCCAGAGTTCAAGGGCTCCCTGGCCTCCCTCTCAGACAGCTTGGGGGTGTCTGTCATGGCCACCGACCAGGACTCCT ACTCCACCAGCAGCACGGAGGAGGAGCTGGAGCAGTTCAGCAGCCCCAGCGTGAAGAAGAAGCCCTCCATGATCCTGGGCAAGGCTCGGC ACCGGCTGAGCTTTGCCAGTTTCAGCAGCATGTTCCACGCTTTCCTCTCCAACAACCGCAAGCTGTACAAGAAGGTGGTGGAGCTGGCGC AGGACAAGGGCTCGTACTTTGGCAGCCTGGTGCAGGACTACAAGGTGTACAGCCTGGAGATGATGGCGCGCCAGACCTCCAGCACGGAGA TGCTGCAGGAGATTCGCACCATGATGACCCAGCTCAAGAGCTACCTGCTGCAGAGCACCGAGCTCAAGGCCCTGGTGGACCCCGCCCTGC ACTCCGAGGAGGAGCTCGAAGCAATTGTAGAGTCTGCCTTGTACAAATGTGTCCTGAAGCCCCTGAAGGAAGCCATCAACTCATGCCTGC ATCAGATCCACAGCAAGGATGGTTCGCTGCAGCAGCTCAAGGAGAACCAGTTAGTGATCCTGGCCACCACCACCACTGACCTAGGTGTGA CCACCAGCGTGCCGGAGGTGCCCATGATGGAGAAGATCCTGCAGAAGTTCACCAGCATGCACAAGGCCTACTCACCTGAGAAGAAGATCT CCATCCTGCTCAAGACCTGCAAACTCATCTACGACTCCATGGCCCTCGGCAACCCAGGGAAGCCCTATGGGGCGGATGACTTCCTGCCTG TGCTCATGTATGTGCTGGCCCGCAGCAACCTCACGGAGATGCTTCTCAATGTGGAGTACATGATGGAGCTCATGGACCCCGCCCTGCAGC TGGGGGAGGGTTCCTACTATCTGACCACCACCTACGGGGCCCTGGAGCACATCAAGAGCTACGACAAGATCACGGTGACCCGGCAGCTGA GTGTGGAGGTGCAGGACTCCATCCACCGCTGGGAGCGCCGGCGTACTCTCAACAAGGCCCGGGCCTCCCGCTCCTCCGTACAGGACTTCA TCTGCGTGTCGTACCTGGAGCCCGAGCAGCAGGCGCGGACGCTGGCGTCGCGGGCGGACACCCAGGCCCAGGCGCTGTGCGCGCAGTGCG CGGAGAAGTTCGCGGTGGAGCGGCCGCAGGCGCACCGGCTGTTCGTGCTGGTGGACGGGCGCTGCTTCCAGCTGGCGGACGACGCGCTGC CGCACTGCATCAAGGGCTACCTGCTGCGCAGCGAGCCCAAGCGCGACTTCCACTTTGTCTACCGGCCCCTGGACGGTGGTGGCGGCGGCG GCGGCGGGAGCCCGCCCTGCCTGGTGGTGCGGGAGCCCAACTTCCTGTGAGGCCCTCCCGGGGCGCCTCCCCTCACCCCCAGGCGCACGT CTGGCCCCGCCTCTGGCTGCGCACTCCCGACCGCGACGTCCACGCAGCAGAGGGACATGGGCCATTCCATGACGTGCCCAGGCCAACGTC GCAGGACAGTTGTGAAAATAACATGACGCTCGTCCAAGGCCACTTCCTGAGGGCAAGTCCTAATAGCCCTGAGACACCGAGACGGCATGT TCTTCATTAGACGGAAAGGGAAACTGAGGCTCAGGAGAGAGGCGCTCCAGGCCGCTGCAGCCAACAAACCGGCGCCCTCTTCACACGTAG CTCCTCAGGCCATTCCCCATGAGTCCCCCACACCCACCCCATCCTCGGTCTTTGCAAAGAAGGGCCCGAGCTTAGTTTCCCCAGGACTGG CCTAGGAAGGAGCACCGGCCACAGCTGCTCCCCGTGCCACTCAGGGTGGACCCAGCATCTCAGGAGCACCTCAGGGTGTCGGTTAAGAGA CAGGCCTCCACCCCTGCACCAGAGCCTGCTCTTAGCTCCCGGTGCCCCCAGACCCCGCAGCTCTGTGCCCGGCAAGAAGCAGCTAGACAC ACGCCAGGGCGCCAAGCACGGCCAGCTCCGCGGACCCATGGACAAGCCCAGCCCCGCCTCAGGGAAAACAGGGCCTTTCCCTACAGGACA >In-frame_ENST00000298047_ENST00000216487_TCGA-D7-A748_FAT3_chr11_92088570_+_RIN3_chr14_93081751_length(amino acids)=1960AA_start in transcript=17_stop in transcript=5899 MDIIMGHCVGTRPPACCLILLLFKLLATVSQGLPGTGPLGFHFTHSIYNATVYENSAARTYVNSQSRMGITLIDLSWDIKYRIVSGDEEG FFKAEEVIIADFCFLRIRTKGGNSAILNREIQDNYLLIVKGSVRGEDLEAWTKVNIQVLDMNDLRPLFSPTTYSVTIAESTPLRTSVAQV TATDADIGSNGEFYYYFKNKVDLFSVHPTSGVISLSGRLNYDEKNRYDLEILAVDRGMKLYGNNGVSSTAKLYVHIERINEHAPTIHVVT HVPFSLEKEPTYAVVTVDDLDDGANGEIESVSIVAGDPLDQFFLAKEGKWLNEYKIKERKQIDWESFPYGYNLTLQAKDKGSPQKCSALK AVYIGNPTRDTVPIRFEKEVYDVSISEFSPPGVVVAIVKLSPEPIDVEYKLSPGEDAVYFKINPRSGLIVTARPLNTVKKEVYKLEVTNK EGDLKAQVTISIEDANDHTPEFQQPLYDAYVNESVPVGTSVLTVSASDKDKGENGYITYSIASLNLLPFVINQFTGVISTTEELDFESSP EIYRFIVRASDWGSPYRHESEVNVTIRIGNVNDNSPLFEKVACQGVISYDFPVGGHITAVSAIDIDELELVKYKIISGNELGFFYLNPDS GVLQLKKSLTNSGIKNGNFALRITATDGENLADPMSINISVLHGKVSSKSFSCRETRVAQKLAEKLLIKAKANGKLNLEDGFLDFYSINR QGPYFDKSFPSDVAVKEDLPVGANILKIKAYDADSGFNGKVLFTISDGNTDSCFNIDMETGQLKVLMPMDREHTDLYLLNITIYDLGNPQ KSSWRLLTINVEDANDNSPVFIQDSYSVNILESSGIGTEIIQVEARDKDLGSNGEVTYSVLTDTQQFAINSSTGIVYVADQLDRESKANY SLKIEARDKAESGQQLFSVVTLKVFLDDVNDCSPAFIPSSYSVKVLEDLPVGTVIAWLETHDPDLGLGGQVRYSLVNDYNGRFEIDKASG AIRLSKELDYEKQQFYNLTVRAKDKGRPVSLSSVSFVEVEVVDVNENLHTPYFPDFAVVGSVKENSRIGTSVLQVTARDEDSGRDGEIQY SIRDGSGLGRFSIDDESVLYLEGSALVFEDIFRLIAFYCVSRDLLPFTLRLPQAILEASSFTDLETIANLGLGFWDSSLNPPQERGKPAE PPRDRAPGFPLVSSLRPTAHDANCACEIELSVGNDRLWFVNPIFIEDCSSALPTDQPPLGNCPARPLPPTSDATSPTSRWAPRRPPPPPP VLPLQPCSPAQPPVLPALAPAPACPLPTSPPVPAPHVTPHAPGPPDHPNQPPMMTCERLPCPTAGLGPLREEAMKPGAASSPLQQVPAPP LPAKKNLPTAPPRRRVSERVSLEDQSPGMAAEGDQLSLPPQGTSDGPEDTPRESTEQGQDTEVKASDPHSMPELPRTAKQPPVPPPRKKR ISRQLASTLPAPLENAELCTQAMALETPTPGPPREGQSPASQAGTQHPPAQATAHSQSSPEFKGSLASLSDSLGVSVMATDQDSYSTSST EEELEQFSSPSVKKKPSMILGKARHRLSFASFSSMFHAFLSNNRKLYKKVVELAQDKGSYFGSLVQDYKVYSLEMMARQTSSTEMLQEIR TMMTQLKSYLLQSTELKALVDPALHSEEELEAIVESALYKCVLKPLKEAINSCLHQIHSKDGSLQQLKENQLVILATTTTDLGVTTSVPE VPMMEKILQKFTSMHKAYSPEKKISILLKTCKLIYDSMALGNPGKPYGADDFLPVLMYVLARSNLTEMLLNVEYMMELMDPALQLGEGSY YLTTTYGALEHIKSYDKITVTRQLSVEVQDSIHRWERRRTLNKARASRSSVQDFICVSYLEPEQQARTLASRADTQAQALCAQCAEKFAV -------------------------------------------------------------- >In-frame_ENST00000525166_ENST00000216487_TCGA-D7-A748_FAT3_chr11_92088570_+_RIN3_chr14_93081751_length(transcript)=6197nt_BP=2864nt AGTGAATATACAGGTTTTAGATATGAATGATCTGAGACCTTTGTTTTCACCCACAACATACTCTGTTACCATAGCAGAAAGCACACCTCT AAGGACTAGTGTTGCCCAGGTGACTGCAACAGACGCAGATATTGGTTCCAATGGAGAATTCTACTACTACTTTAAAAATAAAGTTGATCT CTTTTCAGTTCACCCCACGAGTGGTGTCATCTCCTTAAGTGGTCGATTAAATTATGATGAAAAGAATAGGTATGATCTGGAAATTTTGGC TGTGGACCGGGGAATGAAACTGTATGGGAACAATGGAGTGAGCAGTACTGCAAAGCTTTATGTTCACATTGAGCGCATAAATGAACATGC CCCAACAATCCATGTAGTCACTCATGTTCCTTTCTCGTTGGAAAAAGAGCCAACATATGCAGTGGTGACAGTTGATGACTTAGATGATGG AGCGAATGGAGAGATCGAATCTGTTTCCATTGTGGCTGGGGATCCTTTAGATCAGTTCTTCCTGGCTAAGGAAGGAAAGTGGTTGAATGA GTACAAGATTAAGGAGAGGAAGCAGATTGACTGGGAGAGCTTTCCCTATGGCTACAATCTCACTCTTCAAGCAAAAGACAAGGGATCTCC TCAAAAATGTTCAGCATTAAAGGCAGTCTACATTGGCAACCCCACAAGAGACACTGTCCCCATTAGATTTGAAAAAGAAGTGTACGATGT GAGCATAAGTGAATTTTCCCCTCCTGGTGTCGTGGTTGCTATAGTAAAATTAAGTCCTGAACCGATAGATGTGGAATACAAATTATCTCC TGGTGAGGATGCAGTGTACTTTAAAATTAATCCTCGGTCGGGTCTGATTGTTACAGCACGGCCACTGAATACTGTTAAGAAGGAGGTTTA TAAACTGGAGGTGACAAACAAGGAAGGAGATTTAAAAGCACAGGTCACCATCAGCATAGAAGATGCAAATGACCACACCCCAGAATTTCA GCAACCACTGTATGATGCTTATGTGAATGAAAGTGTCCCAGTGGGAACCAGCGTTCTAACAGTTTCAGCTTCTGATAAGGATAAAGGAGA AAATGGGTACATCACCTATAGTATCGCTAGCCTGAATTTGTTACCATTTGTCATTAATCAGTTTACAGGTGTTATTAGCACAACTGAAGA ACTGGATTTTGAATCCTCCCCAGAAATTTACAGATTCATTGTTAGAGCCTCTGACTGGGGTTCACCATACCGCCATGAAAGTGAGGTCAA TGTGACTATTCGAATAGGAAATGTCAACGACAACAGCCCTCTCTTTGAAAAAGTGGCTTGCCAGGGAGTTATTTCATATGACTTTCCAGT TGGTGGTCACATCACAGCAGTCTCAGCGATCGATATCGATGAACTTGAACTTGTAAAGTACAAAATCATTTCTGGAAATGAACTTGGCTT CTTTTATTTAAACCCAGATTCTGGTGTTTTACAGCTTAAAAAATCACTGACAAATTCTGGCATTAAAAATGGCAATTTTGCCCTCAGAAT TACAGCAACTGATGGAGAGAATCTTGCAGACCCCATGTCTATTAACATTTCAGTCCTACATGGGAAAGTGTCTTCAAAGAGCTTCAGTTG CAGAGAAACTCGTGTGGCTCAAAAGCTGGCAGAGAAACTACTCATTAAGGCAAAAGCAAATGGGAAACTGAATCTGGAAGATGGATTTCT TGACTTTTATTCAATTAATAGACAGGGACCATATTTTGACAAGTCTTTTCCTTCTGATGTGGCTGTAAAGGAGGATCTGCCAGTTGGTGC TAACATTCTGAAGATTAAAGCCTATGATGCCGACTCTGGCTTCAATGGAAAAGTGCTATTTACAATATCAGATGGAAATACGGATAGTTG CTTTAATATTGATATGGAGACTGGGCAGCTTAAAGTCCTTATGCCCATGGATCGAGAACACACAGACCTCTATCTCCTTAATATCACCAT CTATGACTTAGGTAATCCACAGAAATCGTCATGGAGACTGCTGACCATCAATGTGGAGGATGCTAATGACAATAGCCCAGTTTTTATTCA AGACAGTTACTCAGTTAACATTCTTGAAAGTTCAGGCATTGGTACTGAAATCATTCAAGTGGAAGCCAGAGACAAAGACTTAGGTTCTAA TGGTGAAGTGACTTACTCAGTCTTGACAGATACACAGCAGTTTGCCATCAATAGCTCAACTGGAATCGTTTATGTAGCCGACCAGTTGGA CCGGGAATCCAAAGCCAATTATTCTTTGAAAATAGAAGCCAGGGACAAGGCAGAGAGTGGTCAGCAGCTGTTTTCAGTTGTCACTCTTAA AGTTTTTTTAGATGATGTCAATGACTGCTCCCCAGCTTTCATTCCCAGTAGCTATAGTGTGAAGGTTCTTGAAGATCTCCCTGTTGGCAC TGTCATTGCTTGGCTTGAGACCCATGATCCAGATCTTGGACTGGGGGGTCAAGTGCGCTATTCTTTGGTCAATGACTATAATGGGAGATT TGAAATAGATAAAGCAAGTGGTGCCATCCGCTTGAGCAAAGAGCTTGATTATGAGAAACAGCAGTTCTATAACCTTACTGTGCGGGCCAA AGACAAAGGGCGGCCTGTCTCTCTGTCATCTGTTTCCTTTGTTGAGGTGGAAGTGGTGGATGTCAATGAAAACCTCCACACTCCCTATTT CCCAGACTTTGCTGTTGTTGGATCTGTAAAGGAAAACTCACGCATTGGAACAAGCGTGCTGCAGGTGACTGCTCGAGATGAAGACTCCGG AAGGGATGGAGAGATCCAGTACTCCATCAGGGATGGCAGTGGTCTTGGAAGGTTCAGTATAGACGACGAGAGTGTATTGTACCTGGAAGG CTCGGCTCTTGTGTTTGAGGACATCTTCAGATTGATTGCGTTCTACTGTGTCAGTAGAGACTTACTGCCCTTCACACTGCGGCTACCCCA GGCCATCCTTGAGGCCAGCAGCTTCACGGACCTTGAGACCATCGCCAACCTGGGTCTGGGTTTCTGGGACTCCTCGCTGAATCCTCCACA AGAAAGAGGGAAGCCAGCAGAGCCCCCAAGAGACCGGGCCCCCGGATTCCCCCTAGTCTCCAGCCTCAGGCCCACAGCCCATGACGCAAA CTGTGCCTGTGAAATCGAGCTGTCGGTAGGAAATGACCGCCTGTGGTTTGTGAATCCTATTTTCATCGAGGACTGCAGCAGCGCCCTGCC CACCGACCAGCCACCTCTTGGAAATTGCCCTGCACGCCCTTTGCCGCCCACCTCTGATGCCACCTCACCCACCTCCAGGTGGGCCCCACG CCGCCCACCACCCCCTCCCCCAGTGCTGCCCCTGCAGCCCTGCAGCCCAGCCCAGCCCCCTGTGCTCCCTGCTCTTGCCCCCGCCCCTGC CTGTCCTTTGCCCACCTCTCCCCCAGTGCCTGCCCCCCACGTCACACCCCATGCCCCAGGTCCCCCAGACCATCCGAACCAGCCGCCCAT GATGACCTGCGAGAGACTCCCATGCCCCACTGCAGGCCTGGGCCCCCTCAGGGAGGAAGCGATGAAGCCAGGGGCAGCCTCCAGTCCCTT GCAGCAGGTCCCCGCCCCGCCACTGCCTGCGAAGAAGAACCTTCCCACTGCCCCTCCCAGACGCCGCGTTTCCGAGAGGGTGTCCTTAGA AGACCAAAGTCCGGGGATGGCGGCAGAGGGGGACCAGCTCAGCCTGCCTCCCCAAGGGACCTCAGACGGCCCTGAGGACACGCCCCGGGA GAGCACGGAGCAAGGCCAGGACACAGAGGTGAAAGCCAGCGATCCTCACAGCATGCCAGAGCTGCCCAGGACAGCCAAACAACCCCCAGT CCCGCCCCCCAGGAAAAAACGGATCTCTCGACAACTGGCCTCGACCCTCCCAGCTCCCTTAGAGAACGCTGAGCTCTGCACACAGGCGAT GGCCTTGGAGACACCCACGCCGGGTCCACCCAGAGAGGGCCAAAGCCCTGCTTCTCAGGCTGGGACTCAGCACCCTCCTGCCCAGGCCAC TGCCCATTCCCAGAGCTCTCCAGAGTTCAAGGGCTCCCTGGCCTCCCTCTCAGACAGCTTGGGGGTGTCTGTCATGGCCACCGACCAGGA CTCCTACTCCACCAGCAGCACGGAGGAGGAGCTGGAGCAGTTCAGCAGCCCCAGCGTGAAGAAGAAGCCCTCCATGATCCTGGGCAAGGC TCGGCACCGGCTGAGCTTTGCCAGTTTCAGCAGCATGTTCCACGCTTTCCTCTCCAACAACCGCAAGCTGTACAAGAAGGTGGTGGAGCT GGCGCAGGACAAGGGCTCGTACTTTGGCAGCCTGGTGCAGGACTACAAGGTGTACAGCCTGGAGATGATGGCGCGCCAGACCTCCAGCAC GGAGATGCTGCAGGAGATTCGCACCATGATGACCCAGCTCAAGAGCTACCTGCTGCAGAGCACCGAGCTCAAGGCCCTGGTGGACCCCGC CCTGCACTCCGAGGAGGAGCTCGAAGCAATTGTAGAGTCTGCCTTGTACAAATGTGTCCTGAAGCCCCTGAAGGAAGCCATCAACTCATG CCTGCATCAGATCCACAGCAAGGATGGTTCGCTGCAGCAGCTCAAGGAGAACCAGTTAGTGATCCTGGCCACCACCACCACTGACCTAGG TGTGACCACCAGCGTGCCGGAGGTGCCCATGATGGAGAAGATCCTGCAGAAGTTCACCAGCATGCACAAGGCCTACTCACCTGAGAAGAA GATCTCCATCCTGCTCAAGACCTGCAAACTCATCTACGACTCCATGGCCCTCGGCAACCCAGGGAAGCCCTATGGGGCGGATGACTTCCT GCCTGTGCTCATGTATGTGCTGGCCCGCAGCAACCTCACGGAGATGCTTCTCAATGTGGAGTACATGATGGAGCTCATGGACCCCGCCCT GCAGCTGGGGGAGGGTTCCTACTATCTGACCACCACCTACGGGGCCCTGGAGCACATCAAGAGCTACGACAAGATCACGGTGACCCGGCA GCTGAGTGTGGAGGTGCAGGACTCCATCCACCGCTGGGAGCGCCGGCGTACTCTCAACAAGGCCCGGGCCTCCCGCTCCTCCGTACAGGA CTTCATCTGCGTGTCGTACCTGGAGCCCGAGCAGCAGGCGCGGACGCTGGCGTCGCGGGCGGACACCCAGGCCCAGGCGCTGTGCGCGCA GTGCGCGGAGAAGTTCGCGGTGGAGCGGCCGCAGGCGCACCGGCTGTTCGTGCTGGTGGACGGGCGCTGCTTCCAGCTGGCGGACGACGC GCTGCCGCACTGCATCAAGGGCTACCTGCTGCGCAGCGAGCCCAAGCGCGACTTCCACTTTGTCTACCGGCCCCTGGACGGTGGTGGCGG CGGCGGCGGCGGGAGCCCGCCCTGCCTGGTGGTGCGGGAGCCCAACTTCCTGTGAGGCCCTCCCGGGGCGCCTCCCCTCACCCCCAGGCG CACGTCTGGCCCCGCCTCTGGCTGCGCACTCCCGACCGCGACGTCCACGCAGCAGAGGGACATGGGCCATTCCATGACGTGCCCAGGCCA ACGTCGCAGGACAGTTGTGAAAATAACATGACGCTCGTCCAAGGCCACTTCCTGAGGGCAAGTCCTAATAGCCCTGAGACACCGAGACGG CATGTTCTTCATTAGACGGAAAGGGAAACTGAGGCTCAGGAGAGAGGCGCTCCAGGCCGCTGCAGCCAACAAACCGGCGCCCTCTTCACA CGTAGCTCCTCAGGCCATTCCCCATGAGTCCCCCACACCCACCCCATCCTCGGTCTTTGCAAAGAAGGGCCCGAGCTTAGTTTCCCCAGG ACTGGCCTAGGAAGGAGCACCGGCCACAGCTGCTCCCCGTGCCACTCAGGGTGGACCCAGCATCTCAGGAGCACCTCAGGGTGTCGGTTA AGAGACAGGCCTCCACCCCTGCACCAGAGCCTGCTCTTAGCTCCCGGTGCCCCCAGACCCCGCAGCTCTGTGCCCGGCAAGAAGCAGCTA GACACACGCCAGGGCGCCAAGCACGGCCAGCTCCGCGGACCCATGGACAAGCCCAGCCCCGCCTCAGGGAAAACAGGGCCTTTCCCTACA >In-frame_ENST00000525166_ENST00000216487_TCGA-D7-A748_FAT3_chr11_92088570_+_RIN3_chr14_93081751_length(amino acids)=1810AA_start in transcript=22_stop in transcript=5454 MNDLRPLFSPTTYSVTIAESTPLRTSVAQVTATDADIGSNGEFYYYFKNKVDLFSVHPTSGVISLSGRLNYDEKNRYDLEILAVDRGMKL YGNNGVSSTAKLYVHIERINEHAPTIHVVTHVPFSLEKEPTYAVVTVDDLDDGANGEIESVSIVAGDPLDQFFLAKEGKWLNEYKIKERK QIDWESFPYGYNLTLQAKDKGSPQKCSALKAVYIGNPTRDTVPIRFEKEVYDVSISEFSPPGVVVAIVKLSPEPIDVEYKLSPGEDAVYF KINPRSGLIVTARPLNTVKKEVYKLEVTNKEGDLKAQVTISIEDANDHTPEFQQPLYDAYVNESVPVGTSVLTVSASDKDKGENGYITYS IASLNLLPFVINQFTGVISTTEELDFESSPEIYRFIVRASDWGSPYRHESEVNVTIRIGNVNDNSPLFEKVACQGVISYDFPVGGHITAV SAIDIDELELVKYKIISGNELGFFYLNPDSGVLQLKKSLTNSGIKNGNFALRITATDGENLADPMSINISVLHGKVSSKSFSCRETRVAQ KLAEKLLIKAKANGKLNLEDGFLDFYSINRQGPYFDKSFPSDVAVKEDLPVGANILKIKAYDADSGFNGKVLFTISDGNTDSCFNIDMET GQLKVLMPMDREHTDLYLLNITIYDLGNPQKSSWRLLTINVEDANDNSPVFIQDSYSVNILESSGIGTEIIQVEARDKDLGSNGEVTYSV LTDTQQFAINSSTGIVYVADQLDRESKANYSLKIEARDKAESGQQLFSVVTLKVFLDDVNDCSPAFIPSSYSVKVLEDLPVGTVIAWLET HDPDLGLGGQVRYSLVNDYNGRFEIDKASGAIRLSKELDYEKQQFYNLTVRAKDKGRPVSLSSVSFVEVEVVDVNENLHTPYFPDFAVVG SVKENSRIGTSVLQVTARDEDSGRDGEIQYSIRDGSGLGRFSIDDESVLYLEGSALVFEDIFRLIAFYCVSRDLLPFTLRLPQAILEASS FTDLETIANLGLGFWDSSLNPPQERGKPAEPPRDRAPGFPLVSSLRPTAHDANCACEIELSVGNDRLWFVNPIFIEDCSSALPTDQPPLG NCPARPLPPTSDATSPTSRWAPRRPPPPPPVLPLQPCSPAQPPVLPALAPAPACPLPTSPPVPAPHVTPHAPGPPDHPNQPPMMTCERLP CPTAGLGPLREEAMKPGAASSPLQQVPAPPLPAKKNLPTAPPRRRVSERVSLEDQSPGMAAEGDQLSLPPQGTSDGPEDTPRESTEQGQD TEVKASDPHSMPELPRTAKQPPVPPPRKKRISRQLASTLPAPLENAELCTQAMALETPTPGPPREGQSPASQAGTQHPPAQATAHSQSSP EFKGSLASLSDSLGVSVMATDQDSYSTSSTEEELEQFSSPSVKKKPSMILGKARHRLSFASFSSMFHAFLSNNRKLYKKVVELAQDKGSY FGSLVQDYKVYSLEMMARQTSSTEMLQEIRTMMTQLKSYLLQSTELKALVDPALHSEEELEAIVESALYKCVLKPLKEAINSCLHQIHSK DGSLQQLKENQLVILATTTTDLGVTTSVPEVPMMEKILQKFTSMHKAYSPEKKISILLKTCKLIYDSMALGNPGKPYGADDFLPVLMYVL ARSNLTEMLLNVEYMMELMDPALQLGEGSYYLTTTYGALEHIKSYDKITVTRQLSVEVQDSIHRWERRRTLNKARASRSSVQDFICVSYL EPEQQARTLASRADTQAQALCAQCAEKFAVERPQAHRLFVLVDGRCFQLADDALPHCIKGYLLRSEPKRDFHFVYRPLDGGGGGGGGSPP -------------------------------------------------------------- |
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Fusion Gene PPI Analysis for FAT3-RIN3 |
Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in |
Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
Hgene | Hgene's interactors | Tgene | Tgene's interactors |
- Retained PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
Tgene | RIN3 | chr11:92088570 | chr14:93081751 | ENST00000216487 | 2 | 10 | 587_732 | 122.33333333333333 | 986.0 | RAB5B |
- Lost PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
- Retained PPIs, but lost function due to frame-shift fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Related Drugs for FAT3-RIN3 |
Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.8 2021-05-08) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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Related Diseases for FAT3-RIN3 |
Diseases associated with fusion partners. (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Hgene | FAT3 | C0279626 | Squamous cell carcinoma of esophagus | 1 | CTD_human |
Tgene | RIN3 | C0029401 | Osteitis Deformans | 1 | CTD_human |