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Center for Computational Systems Medicine
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Fusion Gene Summary

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Fusion Gene ORF analysis

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Fusion Genomic Features

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Fusion Protein Features

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Fusion Gene Sequence

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Fusion Gene PPI analysis

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Related Drugs

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Related Diseases

Fusion gene:FOXJ3-LRRC41 (FusionGDB2 ID:30971)

Fusion Gene Summary for FOXJ3-LRRC41

check button Fusion gene summary
Fusion gene informationFusion gene name: FOXJ3-LRRC41
Fusion gene ID: 30971
HgeneTgene
Gene symbol

FOXJ3

LRRC41

Gene ID

22887

10489

Gene nameforkhead box J3leucine rich repeat containing 41
Synonyms-MUF1|PP7759
Cytomap

1p34.2

1p34.1-p33

Type of geneprotein-codingprotein-coding
Descriptionforkhead box protein J3leucine-rich repeat-containing protein 41MUF1 protein (MUF1)elongin BC-interacting leucine-rich repeat proteinprotein Muf1
Modification date2020031320200313
UniProtAcc

Q9UPW0

Q15345

Ensembl transtripts involved in fusion geneENST00000372572, ENST00000372573, 
ENST00000361346, ENST00000361776, 
ENST00000545068, ENST00000372571, 
ENST00000343304, ENST00000472710, 
Fusion gene scores* DoF score22 X 19 X 13=54347 X 7 X 6=294
# samples 3110
** MAII scorelog2(31/5434*10)=-4.13167444494774
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0		log2(10/294*10)=-1.55581615506164
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
Context

PubMed: FOXJ3 [Title/Abstract] AND LRRC41 [Title/Abstract] AND fusion [Title/Abstract]

Most frequent breakpointFOXJ3(42693554)-LRRC41(46764042), # samples:2
Anticipated loss of major functional domain due to fusion event.FOXJ3-LRRC41 seems lost the major protein functional domain in Hgene partner, which is a transcription factor due to the frame-shifted ORF.
FOXJ3-LRRC41 seems lost the major protein functional domain in Hgene partner, which is a essential gene due to the frame-shifted ORF.
FOXJ3-LRRC41 seems lost the major protein functional domain in Tgene partner, which is a essential gene due to the frame-shifted ORF.
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
HgeneFOXJ3

GO:0045944

positive regulation of transcription by RNA polymerase II

22740631


check buttonFusion gene breakpoints across FOXJ3 (5'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.

check buttonFusion gene breakpoints across LRRC41 (3'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.

check button Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0)
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
SourceDiseaseSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
ChimerDB4OVTCGA-20-1684-01AFOXJ3chr1

42693554

-LRRC41chr1

46764042

-
ChimerDB4OVTCGA-20-1684FOXJ3chr1

42693553

-LRRC41chr1

46764042

-
ChimerDB4OVTCGA-20-1684-01AFOXJ3chr1

42693554

-LRRC41chr1

46764042

-


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Fusion Gene ORF analysis for FOXJ3-LRRC41

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
Frame-shiftENST00000372572ENST00000343304FOXJ3chr1

42693554

-LRRC41chr1

46764042

-
5CDS-5UTRENST00000372572ENST00000472710FOXJ3chr1

42693554

-LRRC41chr1

46764042

-
In-frameENST00000372573ENST00000343304FOXJ3chr1

42693554

-LRRC41chr1

46764042

-
5CDS-5UTRENST00000372573ENST00000472710FOXJ3chr1

42693554

-LRRC41chr1

46764042

-
In-frameENST00000361346ENST00000343304FOXJ3chr1

42693554

-LRRC41chr1

46764042

-
5CDS-5UTRENST00000361346ENST00000472710FOXJ3chr1

42693554

-LRRC41chr1

46764042

-
In-frameENST00000361776ENST00000343304FOXJ3chr1

42693554

-LRRC41chr1

46764042

-
5CDS-5UTRENST00000361776ENST00000472710FOXJ3chr1

42693554

-LRRC41chr1

46764042

-
In-frameENST00000545068ENST00000343304FOXJ3chr1

42693554

-LRRC41chr1

46764042

-
5CDS-5UTRENST00000545068ENST00000472710FOXJ3chr1

42693554

-LRRC41chr1

46764042

-
intron-3CDSENST00000372571ENST00000343304FOXJ3chr1

42693554

-LRRC41chr1

46764042

-
intron-5UTRENST00000372571ENST00000472710FOXJ3chr1

42693554

-LRRC41chr1

46764042

-
Frame-shiftENST00000372572ENST00000343304FOXJ3chr1

42693553

-LRRC41chr1

46764042

-
5CDS-5UTRENST00000372572ENST00000472710FOXJ3chr1

42693553

-LRRC41chr1

46764042

-
In-frameENST00000372573ENST00000343304FOXJ3chr1

42693553

-LRRC41chr1

46764042

-
5CDS-5UTRENST00000372573ENST00000472710FOXJ3chr1

42693553

-LRRC41chr1

46764042

-
In-frameENST00000361346ENST00000343304FOXJ3chr1

42693553

-LRRC41chr1

46764042

-
5CDS-5UTRENST00000361346ENST00000472710FOXJ3chr1

42693553

-LRRC41chr1

46764042

-
In-frameENST00000361776ENST00000343304FOXJ3chr1

42693553

-LRRC41chr1

46764042

-
5CDS-5UTRENST00000361776ENST00000472710FOXJ3chr1

42693553

-LRRC41chr1

46764042

-
In-frameENST00000545068ENST00000343304FOXJ3chr1

42693553

-LRRC41chr1

46764042

-
5CDS-5UTRENST00000545068ENST00000472710FOXJ3chr1

42693553

-LRRC41chr1

46764042

-
intron-3CDSENST00000372571ENST00000343304FOXJ3chr1

42693553

-LRRC41chr1

46764042

-
intron-5UTRENST00000372571ENST00000472710FOXJ3chr1

42693553

-LRRC41chr1

46764042

-

check buttonORFfinder result based on the fusion transcript sequence of in-frame fusion genes.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandSeq length
(transcript)		BP loci
(transcript)		Predicted start
(transcript)		Predicted stop
(transcript)		Seq length
(amino acids)
ENST00000372573FOXJ3chr142693554-ENST00000343304LRRC41chr146764042-35027977213036771
ENST00000361346FOXJ3chr142693554-ENST00000343304LRRC41chr146764042-34247196432958771
ENST00000361776FOXJ3chr142693554-ENST00000343304LRRC41chr146764042-34247196432958771
ENST00000545068FOXJ3chr142693554-ENST00000343304LRRC41chr146764042-33646595832898771
ENST00000372573FOXJ3chr142693553-ENST00000343304LRRC41chr146764042-35027977213036771
ENST00000361346FOXJ3chr142693553-ENST00000343304LRRC41chr146764042-34247196432958771
ENST00000361776FOXJ3chr142693553-ENST00000343304LRRC41chr146764042-34247196432958771
ENST00000545068FOXJ3chr142693553-ENST00000343304LRRC41chr146764042-33646595832898771

check buttonDeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandNo-coding scoreCoding score
ENST00000372573ENST00000343304FOXJ3chr142693554-LRRC41chr146764042-0.0242887060.97571135
ENST00000361346ENST00000343304FOXJ3chr142693554-LRRC41chr146764042-0.031448540.9685515
ENST00000361776ENST00000343304FOXJ3chr142693554-LRRC41chr146764042-0.031448540.9685515
ENST00000545068ENST00000343304FOXJ3chr142693554-LRRC41chr146764042-0.0268677320.9731322
ENST00000372573ENST00000343304FOXJ3chr142693553-LRRC41chr146764042-0.0242887060.97571135
ENST00000361346ENST00000343304FOXJ3chr142693553-LRRC41chr146764042-0.031448540.9685515
ENST00000361776ENST00000343304FOXJ3chr142693553-LRRC41chr146764042-0.031448540.9685515
ENST00000545068ENST00000343304FOXJ3chr142693553-LRRC41chr146764042-0.0268677320.9731322

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Fusion Genomic Features for FOXJ3-LRRC41


check buttonFusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints.
HgeneHchrHbpHstrandTgeneTchrTbpTstrand1-pp (fusion gene breakpoint)

check buttonDistribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page.

check buttonDistribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page.

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Fusion Protein Features for FOXJ3-LRRC41


check button Go to

FGviewer for the breakpoints of chr1:42693554-chr1:46764042

.
- FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels.
FGviewer

check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
FOXJ3

Q9UPW0

LRRC41

Q15345

FUNCTION: Transcriptional activator of MEF2C involved in the regulation of adult muscle fiber type identity and skeletal muscle regeneration (By similarity). Plays an important role in spermatogenesis (By similarity). Required for the survival of spermatogonia and participates in spermatocyte meiosis (By similarity). {ECO:0000250|UniProtKB:Q8BUR3}.FUNCTION: Probable substrate recognition component of an ECS (Elongin BC-CUL2/5-SOCS-box protein) E3 ubiquitin ligase complex which mediates the ubiquitination and subsequent proteasomal degradation of target proteins. {ECO:0000269|PubMed:15601820}.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page


* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
HgeneFOXJ3chr1:42693553chr1:46764042ENST00000361346-51377_168176.0623.0DNA bindingFork-head
HgeneFOXJ3chr1:42693553chr1:46764042ENST00000361776-51277_168176.0589.0DNA bindingFork-head
HgeneFOXJ3chr1:42693553chr1:46764042ENST00000372572-71577_168176.0623.0DNA bindingFork-head
HgeneFOXJ3chr1:42693553chr1:46764042ENST00000372573-51377_168176.0623.0DNA bindingFork-head
HgeneFOXJ3chr1:42693553chr1:46764042ENST00000545068-51377_168176.0623.0DNA bindingFork-head
HgeneFOXJ3chr1:42693554chr1:46764042ENST00000361346-51377_168176.0623.0DNA bindingFork-head
HgeneFOXJ3chr1:42693554chr1:46764042ENST00000361776-51277_168176.0589.0DNA bindingFork-head
HgeneFOXJ3chr1:42693554chr1:46764042ENST00000372572-71577_168176.0623.0DNA bindingFork-head
HgeneFOXJ3chr1:42693554chr1:46764042ENST00000372573-51377_168176.0623.0DNA bindingFork-head
HgeneFOXJ3chr1:42693554chr1:46764042ENST00000545068-51377_168176.0623.0DNA bindingFork-head
TgeneLRRC41chr1:42693553chr1:46764042ENST00000343304010487_50766.33333333333333813.0RepeatNote=LRR 1
TgeneLRRC41chr1:42693553chr1:46764042ENST00000343304010518_53066.33333333333333813.0RepeatNote=LRR 2
TgeneLRRC41chr1:42693553chr1:46764042ENST00000343304010531_55566.33333333333333813.0RepeatNote=LRR 3
TgeneLRRC41chr1:42693553chr1:46764042ENST00000343304010613_63566.33333333333333813.0RepeatNote=LRR 4
TgeneLRRC41chr1:42693553chr1:46764042ENST00000343304010636_65966.33333333333333813.0RepeatNote=LRR 5
TgeneLRRC41chr1:42693553chr1:46764042ENST00000343304010701_72866.33333333333333813.0RepeatNote=LRR 6
TgeneLRRC41chr1:42693553chr1:46764042ENST00000343304010731_75266.33333333333333813.0RepeatNote=LRR 7
TgeneLRRC41chr1:42693554chr1:46764042ENST00000343304010487_50766.33333333333333813.0RepeatNote=LRR 1
TgeneLRRC41chr1:42693554chr1:46764042ENST00000343304010518_53066.33333333333333813.0RepeatNote=LRR 2
TgeneLRRC41chr1:42693554chr1:46764042ENST00000343304010531_55566.33333333333333813.0RepeatNote=LRR 3
TgeneLRRC41chr1:42693554chr1:46764042ENST00000343304010613_63566.33333333333333813.0RepeatNote=LRR 4
TgeneLRRC41chr1:42693554chr1:46764042ENST00000343304010636_65966.33333333333333813.0RepeatNote=LRR 5
TgeneLRRC41chr1:42693554chr1:46764042ENST00000343304010701_72866.33333333333333813.0RepeatNote=LRR 6
TgeneLRRC41chr1:42693554chr1:46764042ENST00000343304010731_75266.33333333333333813.0RepeatNote=LRR 7

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note


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Fusion Gene Sequence for FOXJ3-LRRC41


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones.
>In-frame_ENST00000372573_ENST00000343304_TCGA-20-1684-01A_FOXJ3_chr1_42693554_-_LRRC41_chr1_46764042_length(transcript)=3502nt_BP=797nt
ATAACCTGGGTAGCTACCTTGAGAATTAGAAGGGCCTTTAGAGGTCCAACTCCTTTAAGAAAGAAAGAAAGACCAGGCACGGGAAAGGCC
TCCGCAGACATGAGTCTAGCACCTGGGACTCATGAAGTTCTGAAAAGAGGGGTGTCCTGAAGGTCCAAGGCGCCTTTGTTGGGGGTCCCG
GAATCCGCGGTGTGCCAGGTCGGAAAAGGCGTCCGCTTTCCTGGAGAGGAGGCTAAGGTGCCGGGCGCTTCGATTCTCTTTGTGGCCAGA
TGGGTTTGTATGGACAGGCTTGTCCATCTGTAACTTCATTAAGGATGACATCTGAACTGGAGAGCAGCCTAACGTCTATGGACTGGTTAC
CACAGCTCACCATGAGAGCAGCCATCCAAAAATCTGATGCTACACAAAATGCACATGGAACAGGAATTTCTAAGAAGAATGCACTCCTTG
ACCCAAATACAACTCTGGACCAGGAAGAAGTCCAACAGCACAAAGATGGGAAACCTCCATACAGTTATGCCAGCCTCATTACATTTGCAA
TTAATAGCTCACCCAAAAAGAAAATGACTTTAAGTGAAATTTATCAGTGGATTTGTGATAACTTCCCATATTATAGAGAGGCTGGCAGTG
GTTGGAAGAATTCCATACGACATAATCTGTCATTGAACAAATGTTTCCTTAAAGTGCCTCGATCTAAGGATGACCCTGGAAAGGGGTCCT
ACTGGGCAATAGACACCAATCCGAAGGAAGATGTGCTGCCTACTCGGCCAAAGAAGAGGGCACGATCTGTAGAACGGCCCTCCCAGGCCC
AATACTTCAAAGCATCCTACCTCTGCTCAATATATATTACTTGGAGAGGATTGAGGAAACTGCCCTCAAGAAAGGCCTCTCAACTCAGGC
CATCTGGCGCCGACTCTGGGATGAACTGATGAAGACAAGGCCTTCCAGTTTGGAAAGTGTGACATGTTGGCGAGCCAAGTTTATGGAGGC
CTTTTTTTCCCATGTTCTACGTGGGACCATTGATGTGTCTTCTGACAGGCGTCTTTGTGATCAGCGGTTCTCACCTCTTCTGCACAGCTC
CCGCCATGTCCGACAGCTCACCATCTGTAACATGCTGCAGGGTGCAACCGAGCTGGTGGCTGAGCCCAACCGCAGGGTTCTGGAGACCCT
GGCCAGCTCCCTGCACACTCTCAAGTTCCGCCACCTGCTGTTCTCTGATGTGGCTGCTCAGCAGTCACTTCGGCAGCTGTTGCATCAGCT
CATTCACCATGGGGCTGTCAGTCAAGTGTCGCTATACTCCTGGCCTGTGCCTGAGTCAGCCCTTTTCATCCTTATTCTCACCATGAGTGC
TGGCTTCTGGCAACCAGGGCCTGGTGGCCCACCCTGCCGCCTCTGTGGAGAGGCCTCCCGAGGCCGGGCCCCATCCCGAGATGAAGGGTC
CCTCTTATTGGGCTCACGTCGGCCCCGCCGGGATGCTGCTGAGCGATGTGCTGCAGCCCTGATGGCCAGCCGGCGTAAGAGTGAAGCCAA
GCAGATGCCCAGAGCTGCACCTGCCACTCGGGTAACACGCCGGAGCACACAGGAGAGCCTGACAGCAGGCGGAACAGACCTTAAGAGGGA
GCTGCACCCCCCAGCCACCTCCCATGAGGCTCCTGGCACCAAGCGGTCACCTTCTGCTCCAGCAGCCACCTCCTCTGCCTCTTCTTCTAC
ATCCTCATACAAACGGGCACCAGCTAGCTCAGCCCCACAGCCTAAGCCCCTAAAGCGTTTCAAGCGAGCTGCAGGGAAGAAGGGTGCTCG
CACCCGTCAGGGGCCTGGTGCAGAGTCTGAAGACCTGTATGACTTCGTTTTTATTGTGGCTGGCGAGAAGGAGGATGGCGAAGAGATGGA
GATTGGGGAAGTGGCTTGTGGAGCTTTGGATGGATCAGATCCCAGCTGCCTGGGGCTTCCAGCACTGGAAGCTTCACAAAGATTCCGCAG
CATCTCCACCTTGGAGCTATTCACAGTTCCACTCTCCACAGAGGCAGCCCTGACACTATGCCACCTGCTGAGCTCCTGGGTGTCACTGGA
GAGCCTCACACTCTCCTACAATGGCCTGGGCTCTAACATCTTCCGCCTGCTAGACAGCCTGCGGGCCCTGTCAGGCCAGGCTGGATGTCG
CCTCCGTGCCCTGCATCTCAGTGACCTGTTCTCACCACTGCCCATCCTGGAGCTGACACGTGCTATCGTGCGAGCACTGCCCCTGCTACG
GGTCCTCTCTATTCGTGTTGACCACCCAAGCCAGCGGGACAACCCTGGTGTGCCAGGGAATGCAGGGCCCCCTAGCCACATAATAGGCGA
TGAGGAGATACCAGAAAACTGCCTGGAGCAGTTGGAGATGGGATTTCCACGGGGAGCCCAGCCAGCCCCACTGCTGTGCTCCGTTCTGAA
GGCCTCGGGTTCTCTGCAGCAGCTGTCCCTGGATAGTGCCACCTTTGCCTCTCCCCAGGATTTTGGGCTTGTTTTGCAAACACTCAAAGA
GTACAACCTAGCCCTGAAAAGACTGAGCTTCCATGACATGAATCTCGCTGACTGTCAGAGCGAGGTGCTCTTTTTGCTACAGAATCTGAC
TCTGCAAGAGATTACCTTCTCCTTCTGCCGTCTGTTTGAGAAGCGCCCAGCCCAATTTCTGCCTGAGATGGTTGCTGCTATGAAGGGCAA
CTCCACACTGAAGGGCCTCCGGCTGCCAGGGAACCGCCTGGGGAATGCTGGCCTGCTGGCCTTGGCAGATGTTTTCTCAGAGGATTCATC
CTCCTCTCTCTGTCAGCTGGACATCAGTTCCAACTGCATCAAGCCAGATGGGCTTCTGGAGTTCGCCAAGCGGCTGGAGCGCTGGGGCCG
TGGAGCCTTTGGTCACCTGCGCCTCTTCCAAAACTGGCTGGACCAGGATGCAGTCACAGCCAGGGAAGCCATCCGGCGGCTCCGGGCTAC
CTGCCATGTGGTTAGCGACTCATGGGACTCATCCCAGGCCTTCGCAGATTATGTTAGCACCATGTGATGGGGCCCGTACCTCACAGTCTC
ATGCTCGGTACCATCAGCTTGCAGGGGCTGAAGCATGGGCTGCCCAGAACCCCAACCACCAGTTCTATCTTTCTCTTTCTGTCACCTTTT
TTCTCTTTTTTCCTTCTTCCCTTGCACTGAGGTCCTGGAGGCCTTGATGAGGCCCAGCAAACAGGCATTCTCACAGCTGGGTTTATAGTC
TTTGGGCCCCTTACTCAGTATCCTGGGAACCCTGGGCCAGGAGGTTACAGTGGTCATCATAATTGCTGAAGAGATCCCCTCCCCTGCCCC
TGGGTTCCTGCCTTCCCTCCTCAAGCAGGCACCCAGGCTTTAGAGAAGTATAGGGGGCTTCTTCCCTGCTGGGCTTACCACACTGCTCTC

>In-frame_ENST00000372573_ENST00000343304_TCGA-20-1684-01A_FOXJ3_chr1_42693554_-_LRRC41_chr1_46764042_length(amino acids)=771AA_start in transcript=721_stop in transcript=3036
MGNRHQSEGRCAAYSAKEEGTICRTALPGPILQSILPLLNIYYLERIEETALKKGLSTQAIWRRLWDELMKTRPSSLESVTCWRAKFMEA
FFSHVLRGTIDVSSDRRLCDQRFSPLLHSSRHVRQLTICNMLQGATELVAEPNRRVLETLASSLHTLKFRHLLFSDVAAQQSLRQLLHQL
IHHGAVSQVSLYSWPVPESALFILILTMSAGFWQPGPGGPPCRLCGEASRGRAPSRDEGSLLLGSRRPRRDAAERCAAALMASRRKSEAK
QMPRAAPATRVTRRSTQESLTAGGTDLKRELHPPATSHEAPGTKRSPSAPAATSSASSSTSSYKRAPASSAPQPKPLKRFKRAAGKKGAR
TRQGPGAESEDLYDFVFIVAGEKEDGEEMEIGEVACGALDGSDPSCLGLPALEASQRFRSISTLELFTVPLSTEAALTLCHLLSSWVSLE
SLTLSYNGLGSNIFRLLDSLRALSGQAGCRLRALHLSDLFSPLPILELTRAIVRALPLLRVLSIRVDHPSQRDNPGVPGNAGPPSHIIGD
EEIPENCLEQLEMGFPRGAQPAPLLCSVLKASGSLQQLSLDSATFASPQDFGLVLQTLKEYNLALKRLSFHDMNLADCQSEVLFLLQNLT
LQEITFSFCRLFEKRPAQFLPEMVAAMKGNSTLKGLRLPGNRLGNAGLLALADVFSEDSSSSLCQLDISSNCIKPDGLLEFAKRLERWGR

--------------------------------------------------------------
>In-frame_ENST00000361346_ENST00000343304_TCGA-20-1684-01A_FOXJ3_chr1_42693554_-_LRRC41_chr1_46764042_length(transcript)=3424nt_BP=719nt
AGTTCCGGGTGCGCGGCCCCGGATGTTGGCTGCTCTTGCTGCCGCCGCCGCTCTCGGGGCTGCTCGGGGCCTCGACCGCTCGCAGTAGGC
ACCGTTGGGACCTTTCCCGGGGGGGCGGAGACGCACGGAGCGGCCGGGGGCTCGGCCGGGCCGTCCCGGCCTGCGCAGCCTGAGATTCTC
TTTGTGGCCAGATGGGTTTGTATGGACAGGCTTGTCCATCTGTAACTTCATTAAGGATGACATCTGAACTGGAGAGCAGCCTAACGTCTA
TGGACTGGTTACCACAGCTCACCATGAGAGCAGCCATCCAAAAATCTGATGCTACACAAAATGCACATGGAACAGGAATTTCTAAGAAGA
ATGCACTCCTTGACCCAAATACAACTCTGGACCAGGAAGAAGTCCAACAGCACAAAGATGGGAAACCTCCATACAGTTATGCCAGCCTCA
TTACATTTGCAATTAATAGCTCACCCAAAAAGAAAATGACTTTAAGTGAAATTTATCAGTGGATTTGTGATAACTTCCCATATTATAGAG
AGGCTGGCAGTGGTTGGAAGAATTCCATACGACATAATCTGTCATTGAACAAATGTTTCCTTAAAGTGCCTCGATCTAAGGATGACCCTG
GAAAGGGGTCCTACTGGGCAATAGACACCAATCCGAAGGAAGATGTGCTGCCTACTCGGCCAAAGAAGAGGGCACGATCTGTAGAACGGC
CCTCCCAGGCCCAATACTTCAAAGCATCCTACCTCTGCTCAATATATATTACTTGGAGAGGATTGAGGAAACTGCCCTCAAGAAAGGCCT
CTCAACTCAGGCCATCTGGCGCCGACTCTGGGATGAACTGATGAAGACAAGGCCTTCCAGTTTGGAAAGTGTGACATGTTGGCGAGCCAA
GTTTATGGAGGCCTTTTTTTCCCATGTTCTACGTGGGACCATTGATGTGTCTTCTGACAGGCGTCTTTGTGATCAGCGGTTCTCACCTCT
TCTGCACAGCTCCCGCCATGTCCGACAGCTCACCATCTGTAACATGCTGCAGGGTGCAACCGAGCTGGTGGCTGAGCCCAACCGCAGGGT
TCTGGAGACCCTGGCCAGCTCCCTGCACACTCTCAAGTTCCGCCACCTGCTGTTCTCTGATGTGGCTGCTCAGCAGTCACTTCGGCAGCT
GTTGCATCAGCTCATTCACCATGGGGCTGTCAGTCAAGTGTCGCTATACTCCTGGCCTGTGCCTGAGTCAGCCCTTTTCATCCTTATTCT
CACCATGAGTGCTGGCTTCTGGCAACCAGGGCCTGGTGGCCCACCCTGCCGCCTCTGTGGAGAGGCCTCCCGAGGCCGGGCCCCATCCCG
AGATGAAGGGTCCCTCTTATTGGGCTCACGTCGGCCCCGCCGGGATGCTGCTGAGCGATGTGCTGCAGCCCTGATGGCCAGCCGGCGTAA
GAGTGAAGCCAAGCAGATGCCCAGAGCTGCACCTGCCACTCGGGTAACACGCCGGAGCACACAGGAGAGCCTGACAGCAGGCGGAACAGA
CCTTAAGAGGGAGCTGCACCCCCCAGCCACCTCCCATGAGGCTCCTGGCACCAAGCGGTCACCTTCTGCTCCAGCAGCCACCTCCTCTGC
CTCTTCTTCTACATCCTCATACAAACGGGCACCAGCTAGCTCAGCCCCACAGCCTAAGCCCCTAAAGCGTTTCAAGCGAGCTGCAGGGAA
GAAGGGTGCTCGCACCCGTCAGGGGCCTGGTGCAGAGTCTGAAGACCTGTATGACTTCGTTTTTATTGTGGCTGGCGAGAAGGAGGATGG
CGAAGAGATGGAGATTGGGGAAGTGGCTTGTGGAGCTTTGGATGGATCAGATCCCAGCTGCCTGGGGCTTCCAGCACTGGAAGCTTCACA
AAGATTCCGCAGCATCTCCACCTTGGAGCTATTCACAGTTCCACTCTCCACAGAGGCAGCCCTGACACTATGCCACCTGCTGAGCTCCTG
GGTGTCACTGGAGAGCCTCACACTCTCCTACAATGGCCTGGGCTCTAACATCTTCCGCCTGCTAGACAGCCTGCGGGCCCTGTCAGGCCA
GGCTGGATGTCGCCTCCGTGCCCTGCATCTCAGTGACCTGTTCTCACCACTGCCCATCCTGGAGCTGACACGTGCTATCGTGCGAGCACT
GCCCCTGCTACGGGTCCTCTCTATTCGTGTTGACCACCCAAGCCAGCGGGACAACCCTGGTGTGCCAGGGAATGCAGGGCCCCCTAGCCA
CATAATAGGCGATGAGGAGATACCAGAAAACTGCCTGGAGCAGTTGGAGATGGGATTTCCACGGGGAGCCCAGCCAGCCCCACTGCTGTG
CTCCGTTCTGAAGGCCTCGGGTTCTCTGCAGCAGCTGTCCCTGGATAGTGCCACCTTTGCCTCTCCCCAGGATTTTGGGCTTGTTTTGCA
AACACTCAAAGAGTACAACCTAGCCCTGAAAAGACTGAGCTTCCATGACATGAATCTCGCTGACTGTCAGAGCGAGGTGCTCTTTTTGCT
ACAGAATCTGACTCTGCAAGAGATTACCTTCTCCTTCTGCCGTCTGTTTGAGAAGCGCCCAGCCCAATTTCTGCCTGAGATGGTTGCTGC
TATGAAGGGCAACTCCACACTGAAGGGCCTCCGGCTGCCAGGGAACCGCCTGGGGAATGCTGGCCTGCTGGCCTTGGCAGATGTTTTCTC
AGAGGATTCATCCTCCTCTCTCTGTCAGCTGGACATCAGTTCCAACTGCATCAAGCCAGATGGGCTTCTGGAGTTCGCCAAGCGGCTGGA
GCGCTGGGGCCGTGGAGCCTTTGGTCACCTGCGCCTCTTCCAAAACTGGCTGGACCAGGATGCAGTCACAGCCAGGGAAGCCATCCGGCG
GCTCCGGGCTACCTGCCATGTGGTTAGCGACTCATGGGACTCATCCCAGGCCTTCGCAGATTATGTTAGCACCATGTGATGGGGCCCGTA
CCTCACAGTCTCATGCTCGGTACCATCAGCTTGCAGGGGCTGAAGCATGGGCTGCCCAGAACCCCAACCACCAGTTCTATCTTTCTCTTT
CTGTCACCTTTTTTCTCTTTTTTCCTTCTTCCCTTGCACTGAGGTCCTGGAGGCCTTGATGAGGCCCAGCAAACAGGCATTCTCACAGCT
GGGTTTATAGTCTTTGGGCCCCTTACTCAGTATCCTGGGAACCCTGGGCCAGGAGGTTACAGTGGTCATCATAATTGCTGAAGAGATCCC
CTCCCCTGCCCCTGGGTTCCTGCCTTCCCTCCTCAAGCAGGCACCCAGGCTTTAGAGAAGTATAGGGGGCTTCTTCCCTGCTGGGCTTAC
CACACTGCTCTCAGGCCTCAAACCCTTTCATACCTTTATTCTTTTTTTTAACCAAAAAAGTTTTTCTTATAAAATAAATTTTGGGCAAAC

>In-frame_ENST00000361346_ENST00000343304_TCGA-20-1684-01A_FOXJ3_chr1_42693554_-_LRRC41_chr1_46764042_length(amino acids)=771AA_start in transcript=643_stop in transcript=2958
MGNRHQSEGRCAAYSAKEEGTICRTALPGPILQSILPLLNIYYLERIEETALKKGLSTQAIWRRLWDELMKTRPSSLESVTCWRAKFMEA
FFSHVLRGTIDVSSDRRLCDQRFSPLLHSSRHVRQLTICNMLQGATELVAEPNRRVLETLASSLHTLKFRHLLFSDVAAQQSLRQLLHQL
IHHGAVSQVSLYSWPVPESALFILILTMSAGFWQPGPGGPPCRLCGEASRGRAPSRDEGSLLLGSRRPRRDAAERCAAALMASRRKSEAK
QMPRAAPATRVTRRSTQESLTAGGTDLKRELHPPATSHEAPGTKRSPSAPAATSSASSSTSSYKRAPASSAPQPKPLKRFKRAAGKKGAR
TRQGPGAESEDLYDFVFIVAGEKEDGEEMEIGEVACGALDGSDPSCLGLPALEASQRFRSISTLELFTVPLSTEAALTLCHLLSSWVSLE
SLTLSYNGLGSNIFRLLDSLRALSGQAGCRLRALHLSDLFSPLPILELTRAIVRALPLLRVLSIRVDHPSQRDNPGVPGNAGPPSHIIGD
EEIPENCLEQLEMGFPRGAQPAPLLCSVLKASGSLQQLSLDSATFASPQDFGLVLQTLKEYNLALKRLSFHDMNLADCQSEVLFLLQNLT
LQEITFSFCRLFEKRPAQFLPEMVAAMKGNSTLKGLRLPGNRLGNAGLLALADVFSEDSSSSLCQLDISSNCIKPDGLLEFAKRLERWGR

--------------------------------------------------------------
>In-frame_ENST00000361776_ENST00000343304_TCGA-20-1684-01A_FOXJ3_chr1_42693554_-_LRRC41_chr1_46764042_length(transcript)=3424nt_BP=719nt
AGTTCCGGGTGCGCGGCCCCGGATGTTGGCTGCTCTTGCTGCCGCCGCCGCTCTCGGGGCTGCTCGGGGCCTCGACCGCTCGCAGTAGGC
ACCGTTGGGACCTTTCCCGGGGGGGCGGAGACGCACGGAGCGGCCGGGGGCTCGGCCGGGCCGTCCCGGCCTGCGCAGCCTGAGATTCTC
TTTGTGGCCAGATGGGTTTGTATGGACAGGCTTGTCCATCTGTAACTTCATTAAGGATGACATCTGAACTGGAGAGCAGCCTAACGTCTA
TGGACTGGTTACCACAGCTCACCATGAGAGCAGCCATCCAAAAATCTGATGCTACACAAAATGCACATGGAACAGGAATTTCTAAGAAGA
ATGCACTCCTTGACCCAAATACAACTCTGGACCAGGAAGAAGTCCAACAGCACAAAGATGGGAAACCTCCATACAGTTATGCCAGCCTCA
TTACATTTGCAATTAATAGCTCACCCAAAAAGAAAATGACTTTAAGTGAAATTTATCAGTGGATTTGTGATAACTTCCCATATTATAGAG
AGGCTGGCAGTGGTTGGAAGAATTCCATACGACATAATCTGTCATTGAACAAATGTTTCCTTAAAGTGCCTCGATCTAAGGATGACCCTG
GAAAGGGGTCCTACTGGGCAATAGACACCAATCCGAAGGAAGATGTGCTGCCTACTCGGCCAAAGAAGAGGGCACGATCTGTAGAACGGC
CCTCCCAGGCCCAATACTTCAAAGCATCCTACCTCTGCTCAATATATATTACTTGGAGAGGATTGAGGAAACTGCCCTCAAGAAAGGCCT
CTCAACTCAGGCCATCTGGCGCCGACTCTGGGATGAACTGATGAAGACAAGGCCTTCCAGTTTGGAAAGTGTGACATGTTGGCGAGCCAA
GTTTATGGAGGCCTTTTTTTCCCATGTTCTACGTGGGACCATTGATGTGTCTTCTGACAGGCGTCTTTGTGATCAGCGGTTCTCACCTCT
TCTGCACAGCTCCCGCCATGTCCGACAGCTCACCATCTGTAACATGCTGCAGGGTGCAACCGAGCTGGTGGCTGAGCCCAACCGCAGGGT
TCTGGAGACCCTGGCCAGCTCCCTGCACACTCTCAAGTTCCGCCACCTGCTGTTCTCTGATGTGGCTGCTCAGCAGTCACTTCGGCAGCT
GTTGCATCAGCTCATTCACCATGGGGCTGTCAGTCAAGTGTCGCTATACTCCTGGCCTGTGCCTGAGTCAGCCCTTTTCATCCTTATTCT
CACCATGAGTGCTGGCTTCTGGCAACCAGGGCCTGGTGGCCCACCCTGCCGCCTCTGTGGAGAGGCCTCCCGAGGCCGGGCCCCATCCCG
AGATGAAGGGTCCCTCTTATTGGGCTCACGTCGGCCCCGCCGGGATGCTGCTGAGCGATGTGCTGCAGCCCTGATGGCCAGCCGGCGTAA
GAGTGAAGCCAAGCAGATGCCCAGAGCTGCACCTGCCACTCGGGTAACACGCCGGAGCACACAGGAGAGCCTGACAGCAGGCGGAACAGA
CCTTAAGAGGGAGCTGCACCCCCCAGCCACCTCCCATGAGGCTCCTGGCACCAAGCGGTCACCTTCTGCTCCAGCAGCCACCTCCTCTGC
CTCTTCTTCTACATCCTCATACAAACGGGCACCAGCTAGCTCAGCCCCACAGCCTAAGCCCCTAAAGCGTTTCAAGCGAGCTGCAGGGAA
GAAGGGTGCTCGCACCCGTCAGGGGCCTGGTGCAGAGTCTGAAGACCTGTATGACTTCGTTTTTATTGTGGCTGGCGAGAAGGAGGATGG
CGAAGAGATGGAGATTGGGGAAGTGGCTTGTGGAGCTTTGGATGGATCAGATCCCAGCTGCCTGGGGCTTCCAGCACTGGAAGCTTCACA
AAGATTCCGCAGCATCTCCACCTTGGAGCTATTCACAGTTCCACTCTCCACAGAGGCAGCCCTGACACTATGCCACCTGCTGAGCTCCTG
GGTGTCACTGGAGAGCCTCACACTCTCCTACAATGGCCTGGGCTCTAACATCTTCCGCCTGCTAGACAGCCTGCGGGCCCTGTCAGGCCA
GGCTGGATGTCGCCTCCGTGCCCTGCATCTCAGTGACCTGTTCTCACCACTGCCCATCCTGGAGCTGACACGTGCTATCGTGCGAGCACT
GCCCCTGCTACGGGTCCTCTCTATTCGTGTTGACCACCCAAGCCAGCGGGACAACCCTGGTGTGCCAGGGAATGCAGGGCCCCCTAGCCA
CATAATAGGCGATGAGGAGATACCAGAAAACTGCCTGGAGCAGTTGGAGATGGGATTTCCACGGGGAGCCCAGCCAGCCCCACTGCTGTG
CTCCGTTCTGAAGGCCTCGGGTTCTCTGCAGCAGCTGTCCCTGGATAGTGCCACCTTTGCCTCTCCCCAGGATTTTGGGCTTGTTTTGCA
AACACTCAAAGAGTACAACCTAGCCCTGAAAAGACTGAGCTTCCATGACATGAATCTCGCTGACTGTCAGAGCGAGGTGCTCTTTTTGCT
ACAGAATCTGACTCTGCAAGAGATTACCTTCTCCTTCTGCCGTCTGTTTGAGAAGCGCCCAGCCCAATTTCTGCCTGAGATGGTTGCTGC
TATGAAGGGCAACTCCACACTGAAGGGCCTCCGGCTGCCAGGGAACCGCCTGGGGAATGCTGGCCTGCTGGCCTTGGCAGATGTTTTCTC
AGAGGATTCATCCTCCTCTCTCTGTCAGCTGGACATCAGTTCCAACTGCATCAAGCCAGATGGGCTTCTGGAGTTCGCCAAGCGGCTGGA
GCGCTGGGGCCGTGGAGCCTTTGGTCACCTGCGCCTCTTCCAAAACTGGCTGGACCAGGATGCAGTCACAGCCAGGGAAGCCATCCGGCG
GCTCCGGGCTACCTGCCATGTGGTTAGCGACTCATGGGACTCATCCCAGGCCTTCGCAGATTATGTTAGCACCATGTGATGGGGCCCGTA
CCTCACAGTCTCATGCTCGGTACCATCAGCTTGCAGGGGCTGAAGCATGGGCTGCCCAGAACCCCAACCACCAGTTCTATCTTTCTCTTT
CTGTCACCTTTTTTCTCTTTTTTCCTTCTTCCCTTGCACTGAGGTCCTGGAGGCCTTGATGAGGCCCAGCAAACAGGCATTCTCACAGCT
GGGTTTATAGTCTTTGGGCCCCTTACTCAGTATCCTGGGAACCCTGGGCCAGGAGGTTACAGTGGTCATCATAATTGCTGAAGAGATCCC
CTCCCCTGCCCCTGGGTTCCTGCCTTCCCTCCTCAAGCAGGCACCCAGGCTTTAGAGAAGTATAGGGGGCTTCTTCCCTGCTGGGCTTAC
CACACTGCTCTCAGGCCTCAAACCCTTTCATACCTTTATTCTTTTTTTTAACCAAAAAAGTTTTTCTTATAAAATAAATTTTGGGCAAAC

>In-frame_ENST00000361776_ENST00000343304_TCGA-20-1684-01A_FOXJ3_chr1_42693554_-_LRRC41_chr1_46764042_length(amino acids)=771AA_start in transcript=643_stop in transcript=2958
MGNRHQSEGRCAAYSAKEEGTICRTALPGPILQSILPLLNIYYLERIEETALKKGLSTQAIWRRLWDELMKTRPSSLESVTCWRAKFMEA
FFSHVLRGTIDVSSDRRLCDQRFSPLLHSSRHVRQLTICNMLQGATELVAEPNRRVLETLASSLHTLKFRHLLFSDVAAQQSLRQLLHQL
IHHGAVSQVSLYSWPVPESALFILILTMSAGFWQPGPGGPPCRLCGEASRGRAPSRDEGSLLLGSRRPRRDAAERCAAALMASRRKSEAK
QMPRAAPATRVTRRSTQESLTAGGTDLKRELHPPATSHEAPGTKRSPSAPAATSSASSSTSSYKRAPASSAPQPKPLKRFKRAAGKKGAR
TRQGPGAESEDLYDFVFIVAGEKEDGEEMEIGEVACGALDGSDPSCLGLPALEASQRFRSISTLELFTVPLSTEAALTLCHLLSSWVSLE
SLTLSYNGLGSNIFRLLDSLRALSGQAGCRLRALHLSDLFSPLPILELTRAIVRALPLLRVLSIRVDHPSQRDNPGVPGNAGPPSHIIGD
EEIPENCLEQLEMGFPRGAQPAPLLCSVLKASGSLQQLSLDSATFASPQDFGLVLQTLKEYNLALKRLSFHDMNLADCQSEVLFLLQNLT
LQEITFSFCRLFEKRPAQFLPEMVAAMKGNSTLKGLRLPGNRLGNAGLLALADVFSEDSSSSLCQLDISSNCIKPDGLLEFAKRLERWGR

--------------------------------------------------------------
>In-frame_ENST00000545068_ENST00000343304_TCGA-20-1684-01A_FOXJ3_chr1_42693554_-_LRRC41_chr1_46764042_length(transcript)=3364nt_BP=659nt
ACAGTTTAGTATGAGATCATTTTCCCTTGCCTGAGTTTTGAGCTGATTGAGAAATAAGAACCTACAGATGAAGAAGCAAGACAGTACCTT
TAAAAAAATTAGCTTTTTATTCAGATTCTCTTTGTGGCCAGATGGGTTTGTATGGACAGGCTTGTCCATCTGTAACTTCATTAAGGATGA
CATCTGAACTGGAGAGCAGCCTAACGTCTATGGACTGGTTACCACAGCTCACCATGAGAGCAGCCATCCAAAAATCTGATGCTACACAAA
ATGCACATGGAACAGGAATTTCTAAGAAGAATGCACTCCTTGACCCAAATACAACTCTGGACCAGGAAGAAGTCCAACAGCACAAAGATG
GGAAACCTCCATACAGTTATGCCAGCCTCATTACATTTGCAATTAATAGCTCACCCAAAAAGAAAATGACTTTAAGTGAAATTTATCAGT
GGATTTGTGATAACTTCCCATATTATAGAGAGGCTGGCAGTGGTTGGAAGAATTCCATACGACATAATCTGTCATTGAACAAATGTTTCC
TTAAAGTGCCTCGATCTAAGGATGACCCTGGAAAGGGGTCCTACTGGGCAATAGACACCAATCCGAAGGAAGATGTGCTGCCTACTCGGC
CAAAGAAGAGGGCACGATCTGTAGAACGGCCCTCCCAGGCCCAATACTTCAAAGCATCCTACCTCTGCTCAATATATATTACTTGGAGAG
GATTGAGGAAACTGCCCTCAAGAAAGGCCTCTCAACTCAGGCCATCTGGCGCCGACTCTGGGATGAACTGATGAAGACAAGGCCTTCCAG
TTTGGAAAGTGTGACATGTTGGCGAGCCAAGTTTATGGAGGCCTTTTTTTCCCATGTTCTACGTGGGACCATTGATGTGTCTTCTGACAG
GCGTCTTTGTGATCAGCGGTTCTCACCTCTTCTGCACAGCTCCCGCCATGTCCGACAGCTCACCATCTGTAACATGCTGCAGGGTGCAAC
CGAGCTGGTGGCTGAGCCCAACCGCAGGGTTCTGGAGACCCTGGCCAGCTCCCTGCACACTCTCAAGTTCCGCCACCTGCTGTTCTCTGA
TGTGGCTGCTCAGCAGTCACTTCGGCAGCTGTTGCATCAGCTCATTCACCATGGGGCTGTCAGTCAAGTGTCGCTATACTCCTGGCCTGT
GCCTGAGTCAGCCCTTTTCATCCTTATTCTCACCATGAGTGCTGGCTTCTGGCAACCAGGGCCTGGTGGCCCACCCTGCCGCCTCTGTGG
AGAGGCCTCCCGAGGCCGGGCCCCATCCCGAGATGAAGGGTCCCTCTTATTGGGCTCACGTCGGCCCCGCCGGGATGCTGCTGAGCGATG
TGCTGCAGCCCTGATGGCCAGCCGGCGTAAGAGTGAAGCCAAGCAGATGCCCAGAGCTGCACCTGCCACTCGGGTAACACGCCGGAGCAC
ACAGGAGAGCCTGACAGCAGGCGGAACAGACCTTAAGAGGGAGCTGCACCCCCCAGCCACCTCCCATGAGGCTCCTGGCACCAAGCGGTC
ACCTTCTGCTCCAGCAGCCACCTCCTCTGCCTCTTCTTCTACATCCTCATACAAACGGGCACCAGCTAGCTCAGCCCCACAGCCTAAGCC
CCTAAAGCGTTTCAAGCGAGCTGCAGGGAAGAAGGGTGCTCGCACCCGTCAGGGGCCTGGTGCAGAGTCTGAAGACCTGTATGACTTCGT
TTTTATTGTGGCTGGCGAGAAGGAGGATGGCGAAGAGATGGAGATTGGGGAAGTGGCTTGTGGAGCTTTGGATGGATCAGATCCCAGCTG
CCTGGGGCTTCCAGCACTGGAAGCTTCACAAAGATTCCGCAGCATCTCCACCTTGGAGCTATTCACAGTTCCACTCTCCACAGAGGCAGC
CCTGACACTATGCCACCTGCTGAGCTCCTGGGTGTCACTGGAGAGCCTCACACTCTCCTACAATGGCCTGGGCTCTAACATCTTCCGCCT
GCTAGACAGCCTGCGGGCCCTGTCAGGCCAGGCTGGATGTCGCCTCCGTGCCCTGCATCTCAGTGACCTGTTCTCACCACTGCCCATCCT
GGAGCTGACACGTGCTATCGTGCGAGCACTGCCCCTGCTACGGGTCCTCTCTATTCGTGTTGACCACCCAAGCCAGCGGGACAACCCTGG
TGTGCCAGGGAATGCAGGGCCCCCTAGCCACATAATAGGCGATGAGGAGATACCAGAAAACTGCCTGGAGCAGTTGGAGATGGGATTTCC
ACGGGGAGCCCAGCCAGCCCCACTGCTGTGCTCCGTTCTGAAGGCCTCGGGTTCTCTGCAGCAGCTGTCCCTGGATAGTGCCACCTTTGC
CTCTCCCCAGGATTTTGGGCTTGTTTTGCAAACACTCAAAGAGTACAACCTAGCCCTGAAAAGACTGAGCTTCCATGACATGAATCTCGC
TGACTGTCAGAGCGAGGTGCTCTTTTTGCTACAGAATCTGACTCTGCAAGAGATTACCTTCTCCTTCTGCCGTCTGTTTGAGAAGCGCCC
AGCCCAATTTCTGCCTGAGATGGTTGCTGCTATGAAGGGCAACTCCACACTGAAGGGCCTCCGGCTGCCAGGGAACCGCCTGGGGAATGC
TGGCCTGCTGGCCTTGGCAGATGTTTTCTCAGAGGATTCATCCTCCTCTCTCTGTCAGCTGGACATCAGTTCCAACTGCATCAAGCCAGA
TGGGCTTCTGGAGTTCGCCAAGCGGCTGGAGCGCTGGGGCCGTGGAGCCTTTGGTCACCTGCGCCTCTTCCAAAACTGGCTGGACCAGGA
TGCAGTCACAGCCAGGGAAGCCATCCGGCGGCTCCGGGCTACCTGCCATGTGGTTAGCGACTCATGGGACTCATCCCAGGCCTTCGCAGA
TTATGTTAGCACCATGTGATGGGGCCCGTACCTCACAGTCTCATGCTCGGTACCATCAGCTTGCAGGGGCTGAAGCATGGGCTGCCCAGA
ACCCCAACCACCAGTTCTATCTTTCTCTTTCTGTCACCTTTTTTCTCTTTTTTCCTTCTTCCCTTGCACTGAGGTCCTGGAGGCCTTGAT
GAGGCCCAGCAAACAGGCATTCTCACAGCTGGGTTTATAGTCTTTGGGCCCCTTACTCAGTATCCTGGGAACCCTGGGCCAGGAGGTTAC
AGTGGTCATCATAATTGCTGAAGAGATCCCCTCCCCTGCCCCTGGGTTCCTGCCTTCCCTCCTCAAGCAGGCACCCAGGCTTTAGAGAAG
TATAGGGGGCTTCTTCCCTGCTGGGCTTACCACACTGCTCTCAGGCCTCAAACCCTTTCATACCTTTATTCTTTTTTTTAACCAAAAAAG

>In-frame_ENST00000545068_ENST00000343304_TCGA-20-1684-01A_FOXJ3_chr1_42693554_-_LRRC41_chr1_46764042_length(amino acids)=771AA_start in transcript=583_stop in transcript=2898
MGNRHQSEGRCAAYSAKEEGTICRTALPGPILQSILPLLNIYYLERIEETALKKGLSTQAIWRRLWDELMKTRPSSLESVTCWRAKFMEA
FFSHVLRGTIDVSSDRRLCDQRFSPLLHSSRHVRQLTICNMLQGATELVAEPNRRVLETLASSLHTLKFRHLLFSDVAAQQSLRQLLHQL
IHHGAVSQVSLYSWPVPESALFILILTMSAGFWQPGPGGPPCRLCGEASRGRAPSRDEGSLLLGSRRPRRDAAERCAAALMASRRKSEAK
QMPRAAPATRVTRRSTQESLTAGGTDLKRELHPPATSHEAPGTKRSPSAPAATSSASSSTSSYKRAPASSAPQPKPLKRFKRAAGKKGAR
TRQGPGAESEDLYDFVFIVAGEKEDGEEMEIGEVACGALDGSDPSCLGLPALEASQRFRSISTLELFTVPLSTEAALTLCHLLSSWVSLE
SLTLSYNGLGSNIFRLLDSLRALSGQAGCRLRALHLSDLFSPLPILELTRAIVRALPLLRVLSIRVDHPSQRDNPGVPGNAGPPSHIIGD
EEIPENCLEQLEMGFPRGAQPAPLLCSVLKASGSLQQLSLDSATFASPQDFGLVLQTLKEYNLALKRLSFHDMNLADCQSEVLFLLQNLT
LQEITFSFCRLFEKRPAQFLPEMVAAMKGNSTLKGLRLPGNRLGNAGLLALADVFSEDSSSSLCQLDISSNCIKPDGLLEFAKRLERWGR

--------------------------------------------------------------
>In-frame_ENST00000372573_ENST00000343304_TCGA-20-1684_FOXJ3_chr1_42693553_-_LRRC41_chr1_46764042_length(transcript)=3502nt_BP=797nt
ATAACCTGGGTAGCTACCTTGAGAATTAGAAGGGCCTTTAGAGGTCCAACTCCTTTAAGAAAGAAAGAAAGACCAGGCACGGGAAAGGCC
TCCGCAGACATGAGTCTAGCACCTGGGACTCATGAAGTTCTGAAAAGAGGGGTGTCCTGAAGGTCCAAGGCGCCTTTGTTGGGGGTCCCG
GAATCCGCGGTGTGCCAGGTCGGAAAAGGCGTCCGCTTTCCTGGAGAGGAGGCTAAGGTGCCGGGCGCTTCGATTCTCTTTGTGGCCAGA
TGGGTTTGTATGGACAGGCTTGTCCATCTGTAACTTCATTAAGGATGACATCTGAACTGGAGAGCAGCCTAACGTCTATGGACTGGTTAC
CACAGCTCACCATGAGAGCAGCCATCCAAAAATCTGATGCTACACAAAATGCACATGGAACAGGAATTTCTAAGAAGAATGCACTCCTTG
ACCCAAATACAACTCTGGACCAGGAAGAAGTCCAACAGCACAAAGATGGGAAACCTCCATACAGTTATGCCAGCCTCATTACATTTGCAA
TTAATAGCTCACCCAAAAAGAAAATGACTTTAAGTGAAATTTATCAGTGGATTTGTGATAACTTCCCATATTATAGAGAGGCTGGCAGTG
GTTGGAAGAATTCCATACGACATAATCTGTCATTGAACAAATGTTTCCTTAAAGTGCCTCGATCTAAGGATGACCCTGGAAAGGGGTCCT
ACTGGGCAATAGACACCAATCCGAAGGAAGATGTGCTGCCTACTCGGCCAAAGAAGAGGGCACGATCTGTAGAACGGCCCTCCCAGGCCC
AATACTTCAAAGCATCCTACCTCTGCTCAATATATATTACTTGGAGAGGATTGAGGAAACTGCCCTCAAGAAAGGCCTCTCAACTCAGGC
CATCTGGCGCCGACTCTGGGATGAACTGATGAAGACAAGGCCTTCCAGTTTGGAAAGTGTGACATGTTGGCGAGCCAAGTTTATGGAGGC
CTTTTTTTCCCATGTTCTACGTGGGACCATTGATGTGTCTTCTGACAGGCGTCTTTGTGATCAGCGGTTCTCACCTCTTCTGCACAGCTC
CCGCCATGTCCGACAGCTCACCATCTGTAACATGCTGCAGGGTGCAACCGAGCTGGTGGCTGAGCCCAACCGCAGGGTTCTGGAGACCCT
GGCCAGCTCCCTGCACACTCTCAAGTTCCGCCACCTGCTGTTCTCTGATGTGGCTGCTCAGCAGTCACTTCGGCAGCTGTTGCATCAGCT
CATTCACCATGGGGCTGTCAGTCAAGTGTCGCTATACTCCTGGCCTGTGCCTGAGTCAGCCCTTTTCATCCTTATTCTCACCATGAGTGC
TGGCTTCTGGCAACCAGGGCCTGGTGGCCCACCCTGCCGCCTCTGTGGAGAGGCCTCCCGAGGCCGGGCCCCATCCCGAGATGAAGGGTC
CCTCTTATTGGGCTCACGTCGGCCCCGCCGGGATGCTGCTGAGCGATGTGCTGCAGCCCTGATGGCCAGCCGGCGTAAGAGTGAAGCCAA
GCAGATGCCCAGAGCTGCACCTGCCACTCGGGTAACACGCCGGAGCACACAGGAGAGCCTGACAGCAGGCGGAACAGACCTTAAGAGGGA
GCTGCACCCCCCAGCCACCTCCCATGAGGCTCCTGGCACCAAGCGGTCACCTTCTGCTCCAGCAGCCACCTCCTCTGCCTCTTCTTCTAC
ATCCTCATACAAACGGGCACCAGCTAGCTCAGCCCCACAGCCTAAGCCCCTAAAGCGTTTCAAGCGAGCTGCAGGGAAGAAGGGTGCTCG
CACCCGTCAGGGGCCTGGTGCAGAGTCTGAAGACCTGTATGACTTCGTTTTTATTGTGGCTGGCGAGAAGGAGGATGGCGAAGAGATGGA
GATTGGGGAAGTGGCTTGTGGAGCTTTGGATGGATCAGATCCCAGCTGCCTGGGGCTTCCAGCACTGGAAGCTTCACAAAGATTCCGCAG
CATCTCCACCTTGGAGCTATTCACAGTTCCACTCTCCACAGAGGCAGCCCTGACACTATGCCACCTGCTGAGCTCCTGGGTGTCACTGGA
GAGCCTCACACTCTCCTACAATGGCCTGGGCTCTAACATCTTCCGCCTGCTAGACAGCCTGCGGGCCCTGTCAGGCCAGGCTGGATGTCG
CCTCCGTGCCCTGCATCTCAGTGACCTGTTCTCACCACTGCCCATCCTGGAGCTGACACGTGCTATCGTGCGAGCACTGCCCCTGCTACG
GGTCCTCTCTATTCGTGTTGACCACCCAAGCCAGCGGGACAACCCTGGTGTGCCAGGGAATGCAGGGCCCCCTAGCCACATAATAGGCGA
TGAGGAGATACCAGAAAACTGCCTGGAGCAGTTGGAGATGGGATTTCCACGGGGAGCCCAGCCAGCCCCACTGCTGTGCTCCGTTCTGAA
GGCCTCGGGTTCTCTGCAGCAGCTGTCCCTGGATAGTGCCACCTTTGCCTCTCCCCAGGATTTTGGGCTTGTTTTGCAAACACTCAAAGA
GTACAACCTAGCCCTGAAAAGACTGAGCTTCCATGACATGAATCTCGCTGACTGTCAGAGCGAGGTGCTCTTTTTGCTACAGAATCTGAC
TCTGCAAGAGATTACCTTCTCCTTCTGCCGTCTGTTTGAGAAGCGCCCAGCCCAATTTCTGCCTGAGATGGTTGCTGCTATGAAGGGCAA
CTCCACACTGAAGGGCCTCCGGCTGCCAGGGAACCGCCTGGGGAATGCTGGCCTGCTGGCCTTGGCAGATGTTTTCTCAGAGGATTCATC
CTCCTCTCTCTGTCAGCTGGACATCAGTTCCAACTGCATCAAGCCAGATGGGCTTCTGGAGTTCGCCAAGCGGCTGGAGCGCTGGGGCCG
TGGAGCCTTTGGTCACCTGCGCCTCTTCCAAAACTGGCTGGACCAGGATGCAGTCACAGCCAGGGAAGCCATCCGGCGGCTCCGGGCTAC
CTGCCATGTGGTTAGCGACTCATGGGACTCATCCCAGGCCTTCGCAGATTATGTTAGCACCATGTGATGGGGCCCGTACCTCACAGTCTC
ATGCTCGGTACCATCAGCTTGCAGGGGCTGAAGCATGGGCTGCCCAGAACCCCAACCACCAGTTCTATCTTTCTCTTTCTGTCACCTTTT
TTCTCTTTTTTCCTTCTTCCCTTGCACTGAGGTCCTGGAGGCCTTGATGAGGCCCAGCAAACAGGCATTCTCACAGCTGGGTTTATAGTC
TTTGGGCCCCTTACTCAGTATCCTGGGAACCCTGGGCCAGGAGGTTACAGTGGTCATCATAATTGCTGAAGAGATCCCCTCCCCTGCCCC
TGGGTTCCTGCCTTCCCTCCTCAAGCAGGCACCCAGGCTTTAGAGAAGTATAGGGGGCTTCTTCCCTGCTGGGCTTACCACACTGCTCTC

>In-frame_ENST00000372573_ENST00000343304_TCGA-20-1684_FOXJ3_chr1_42693553_-_LRRC41_chr1_46764042_length(amino acids)=771AA_start in transcript=721_stop in transcript=3036
MGNRHQSEGRCAAYSAKEEGTICRTALPGPILQSILPLLNIYYLERIEETALKKGLSTQAIWRRLWDELMKTRPSSLESVTCWRAKFMEA
FFSHVLRGTIDVSSDRRLCDQRFSPLLHSSRHVRQLTICNMLQGATELVAEPNRRVLETLASSLHTLKFRHLLFSDVAAQQSLRQLLHQL
IHHGAVSQVSLYSWPVPESALFILILTMSAGFWQPGPGGPPCRLCGEASRGRAPSRDEGSLLLGSRRPRRDAAERCAAALMASRRKSEAK
QMPRAAPATRVTRRSTQESLTAGGTDLKRELHPPATSHEAPGTKRSPSAPAATSSASSSTSSYKRAPASSAPQPKPLKRFKRAAGKKGAR
TRQGPGAESEDLYDFVFIVAGEKEDGEEMEIGEVACGALDGSDPSCLGLPALEASQRFRSISTLELFTVPLSTEAALTLCHLLSSWVSLE
SLTLSYNGLGSNIFRLLDSLRALSGQAGCRLRALHLSDLFSPLPILELTRAIVRALPLLRVLSIRVDHPSQRDNPGVPGNAGPPSHIIGD
EEIPENCLEQLEMGFPRGAQPAPLLCSVLKASGSLQQLSLDSATFASPQDFGLVLQTLKEYNLALKRLSFHDMNLADCQSEVLFLLQNLT
LQEITFSFCRLFEKRPAQFLPEMVAAMKGNSTLKGLRLPGNRLGNAGLLALADVFSEDSSSSLCQLDISSNCIKPDGLLEFAKRLERWGR

--------------------------------------------------------------
>In-frame_ENST00000361346_ENST00000343304_TCGA-20-1684_FOXJ3_chr1_42693553_-_LRRC41_chr1_46764042_length(transcript)=3424nt_BP=719nt
AGTTCCGGGTGCGCGGCCCCGGATGTTGGCTGCTCTTGCTGCCGCCGCCGCTCTCGGGGCTGCTCGGGGCCTCGACCGCTCGCAGTAGGC
ACCGTTGGGACCTTTCCCGGGGGGGCGGAGACGCACGGAGCGGCCGGGGGCTCGGCCGGGCCGTCCCGGCCTGCGCAGCCTGAGATTCTC
TTTGTGGCCAGATGGGTTTGTATGGACAGGCTTGTCCATCTGTAACTTCATTAAGGATGACATCTGAACTGGAGAGCAGCCTAACGTCTA
TGGACTGGTTACCACAGCTCACCATGAGAGCAGCCATCCAAAAATCTGATGCTACACAAAATGCACATGGAACAGGAATTTCTAAGAAGA
ATGCACTCCTTGACCCAAATACAACTCTGGACCAGGAAGAAGTCCAACAGCACAAAGATGGGAAACCTCCATACAGTTATGCCAGCCTCA
TTACATTTGCAATTAATAGCTCACCCAAAAAGAAAATGACTTTAAGTGAAATTTATCAGTGGATTTGTGATAACTTCCCATATTATAGAG
AGGCTGGCAGTGGTTGGAAGAATTCCATACGACATAATCTGTCATTGAACAAATGTTTCCTTAAAGTGCCTCGATCTAAGGATGACCCTG
GAAAGGGGTCCTACTGGGCAATAGACACCAATCCGAAGGAAGATGTGCTGCCTACTCGGCCAAAGAAGAGGGCACGATCTGTAGAACGGC
CCTCCCAGGCCCAATACTTCAAAGCATCCTACCTCTGCTCAATATATATTACTTGGAGAGGATTGAGGAAACTGCCCTCAAGAAAGGCCT
CTCAACTCAGGCCATCTGGCGCCGACTCTGGGATGAACTGATGAAGACAAGGCCTTCCAGTTTGGAAAGTGTGACATGTTGGCGAGCCAA
GTTTATGGAGGCCTTTTTTTCCCATGTTCTACGTGGGACCATTGATGTGTCTTCTGACAGGCGTCTTTGTGATCAGCGGTTCTCACCTCT
TCTGCACAGCTCCCGCCATGTCCGACAGCTCACCATCTGTAACATGCTGCAGGGTGCAACCGAGCTGGTGGCTGAGCCCAACCGCAGGGT
TCTGGAGACCCTGGCCAGCTCCCTGCACACTCTCAAGTTCCGCCACCTGCTGTTCTCTGATGTGGCTGCTCAGCAGTCACTTCGGCAGCT
GTTGCATCAGCTCATTCACCATGGGGCTGTCAGTCAAGTGTCGCTATACTCCTGGCCTGTGCCTGAGTCAGCCCTTTTCATCCTTATTCT
CACCATGAGTGCTGGCTTCTGGCAACCAGGGCCTGGTGGCCCACCCTGCCGCCTCTGTGGAGAGGCCTCCCGAGGCCGGGCCCCATCCCG
AGATGAAGGGTCCCTCTTATTGGGCTCACGTCGGCCCCGCCGGGATGCTGCTGAGCGATGTGCTGCAGCCCTGATGGCCAGCCGGCGTAA
GAGTGAAGCCAAGCAGATGCCCAGAGCTGCACCTGCCACTCGGGTAACACGCCGGAGCACACAGGAGAGCCTGACAGCAGGCGGAACAGA
CCTTAAGAGGGAGCTGCACCCCCCAGCCACCTCCCATGAGGCTCCTGGCACCAAGCGGTCACCTTCTGCTCCAGCAGCCACCTCCTCTGC
CTCTTCTTCTACATCCTCATACAAACGGGCACCAGCTAGCTCAGCCCCACAGCCTAAGCCCCTAAAGCGTTTCAAGCGAGCTGCAGGGAA
GAAGGGTGCTCGCACCCGTCAGGGGCCTGGTGCAGAGTCTGAAGACCTGTATGACTTCGTTTTTATTGTGGCTGGCGAGAAGGAGGATGG
CGAAGAGATGGAGATTGGGGAAGTGGCTTGTGGAGCTTTGGATGGATCAGATCCCAGCTGCCTGGGGCTTCCAGCACTGGAAGCTTCACA
AAGATTCCGCAGCATCTCCACCTTGGAGCTATTCACAGTTCCACTCTCCACAGAGGCAGCCCTGACACTATGCCACCTGCTGAGCTCCTG
GGTGTCACTGGAGAGCCTCACACTCTCCTACAATGGCCTGGGCTCTAACATCTTCCGCCTGCTAGACAGCCTGCGGGCCCTGTCAGGCCA
GGCTGGATGTCGCCTCCGTGCCCTGCATCTCAGTGACCTGTTCTCACCACTGCCCATCCTGGAGCTGACACGTGCTATCGTGCGAGCACT
GCCCCTGCTACGGGTCCTCTCTATTCGTGTTGACCACCCAAGCCAGCGGGACAACCCTGGTGTGCCAGGGAATGCAGGGCCCCCTAGCCA
CATAATAGGCGATGAGGAGATACCAGAAAACTGCCTGGAGCAGTTGGAGATGGGATTTCCACGGGGAGCCCAGCCAGCCCCACTGCTGTG
CTCCGTTCTGAAGGCCTCGGGTTCTCTGCAGCAGCTGTCCCTGGATAGTGCCACCTTTGCCTCTCCCCAGGATTTTGGGCTTGTTTTGCA
AACACTCAAAGAGTACAACCTAGCCCTGAAAAGACTGAGCTTCCATGACATGAATCTCGCTGACTGTCAGAGCGAGGTGCTCTTTTTGCT
ACAGAATCTGACTCTGCAAGAGATTACCTTCTCCTTCTGCCGTCTGTTTGAGAAGCGCCCAGCCCAATTTCTGCCTGAGATGGTTGCTGC
TATGAAGGGCAACTCCACACTGAAGGGCCTCCGGCTGCCAGGGAACCGCCTGGGGAATGCTGGCCTGCTGGCCTTGGCAGATGTTTTCTC
AGAGGATTCATCCTCCTCTCTCTGTCAGCTGGACATCAGTTCCAACTGCATCAAGCCAGATGGGCTTCTGGAGTTCGCCAAGCGGCTGGA
GCGCTGGGGCCGTGGAGCCTTTGGTCACCTGCGCCTCTTCCAAAACTGGCTGGACCAGGATGCAGTCACAGCCAGGGAAGCCATCCGGCG
GCTCCGGGCTACCTGCCATGTGGTTAGCGACTCATGGGACTCATCCCAGGCCTTCGCAGATTATGTTAGCACCATGTGATGGGGCCCGTA
CCTCACAGTCTCATGCTCGGTACCATCAGCTTGCAGGGGCTGAAGCATGGGCTGCCCAGAACCCCAACCACCAGTTCTATCTTTCTCTTT
CTGTCACCTTTTTTCTCTTTTTTCCTTCTTCCCTTGCACTGAGGTCCTGGAGGCCTTGATGAGGCCCAGCAAACAGGCATTCTCACAGCT
GGGTTTATAGTCTTTGGGCCCCTTACTCAGTATCCTGGGAACCCTGGGCCAGGAGGTTACAGTGGTCATCATAATTGCTGAAGAGATCCC
CTCCCCTGCCCCTGGGTTCCTGCCTTCCCTCCTCAAGCAGGCACCCAGGCTTTAGAGAAGTATAGGGGGCTTCTTCCCTGCTGGGCTTAC
CACACTGCTCTCAGGCCTCAAACCCTTTCATACCTTTATTCTTTTTTTTAACCAAAAAAGTTTTTCTTATAAAATAAATTTTGGGCAAAC

>In-frame_ENST00000361346_ENST00000343304_TCGA-20-1684_FOXJ3_chr1_42693553_-_LRRC41_chr1_46764042_length(amino acids)=771AA_start in transcript=643_stop in transcript=2958
MGNRHQSEGRCAAYSAKEEGTICRTALPGPILQSILPLLNIYYLERIEETALKKGLSTQAIWRRLWDELMKTRPSSLESVTCWRAKFMEA
FFSHVLRGTIDVSSDRRLCDQRFSPLLHSSRHVRQLTICNMLQGATELVAEPNRRVLETLASSLHTLKFRHLLFSDVAAQQSLRQLLHQL
IHHGAVSQVSLYSWPVPESALFILILTMSAGFWQPGPGGPPCRLCGEASRGRAPSRDEGSLLLGSRRPRRDAAERCAAALMASRRKSEAK
QMPRAAPATRVTRRSTQESLTAGGTDLKRELHPPATSHEAPGTKRSPSAPAATSSASSSTSSYKRAPASSAPQPKPLKRFKRAAGKKGAR
TRQGPGAESEDLYDFVFIVAGEKEDGEEMEIGEVACGALDGSDPSCLGLPALEASQRFRSISTLELFTVPLSTEAALTLCHLLSSWVSLE
SLTLSYNGLGSNIFRLLDSLRALSGQAGCRLRALHLSDLFSPLPILELTRAIVRALPLLRVLSIRVDHPSQRDNPGVPGNAGPPSHIIGD
EEIPENCLEQLEMGFPRGAQPAPLLCSVLKASGSLQQLSLDSATFASPQDFGLVLQTLKEYNLALKRLSFHDMNLADCQSEVLFLLQNLT
LQEITFSFCRLFEKRPAQFLPEMVAAMKGNSTLKGLRLPGNRLGNAGLLALADVFSEDSSSSLCQLDISSNCIKPDGLLEFAKRLERWGR

--------------------------------------------------------------
>In-frame_ENST00000361776_ENST00000343304_TCGA-20-1684_FOXJ3_chr1_42693553_-_LRRC41_chr1_46764042_length(transcript)=3424nt_BP=719nt
AGTTCCGGGTGCGCGGCCCCGGATGTTGGCTGCTCTTGCTGCCGCCGCCGCTCTCGGGGCTGCTCGGGGCCTCGACCGCTCGCAGTAGGC
ACCGTTGGGACCTTTCCCGGGGGGGCGGAGACGCACGGAGCGGCCGGGGGCTCGGCCGGGCCGTCCCGGCCTGCGCAGCCTGAGATTCTC
TTTGTGGCCAGATGGGTTTGTATGGACAGGCTTGTCCATCTGTAACTTCATTAAGGATGACATCTGAACTGGAGAGCAGCCTAACGTCTA
TGGACTGGTTACCACAGCTCACCATGAGAGCAGCCATCCAAAAATCTGATGCTACACAAAATGCACATGGAACAGGAATTTCTAAGAAGA
ATGCACTCCTTGACCCAAATACAACTCTGGACCAGGAAGAAGTCCAACAGCACAAAGATGGGAAACCTCCATACAGTTATGCCAGCCTCA
TTACATTTGCAATTAATAGCTCACCCAAAAAGAAAATGACTTTAAGTGAAATTTATCAGTGGATTTGTGATAACTTCCCATATTATAGAG
AGGCTGGCAGTGGTTGGAAGAATTCCATACGACATAATCTGTCATTGAACAAATGTTTCCTTAAAGTGCCTCGATCTAAGGATGACCCTG
GAAAGGGGTCCTACTGGGCAATAGACACCAATCCGAAGGAAGATGTGCTGCCTACTCGGCCAAAGAAGAGGGCACGATCTGTAGAACGGC
CCTCCCAGGCCCAATACTTCAAAGCATCCTACCTCTGCTCAATATATATTACTTGGAGAGGATTGAGGAAACTGCCCTCAAGAAAGGCCT
CTCAACTCAGGCCATCTGGCGCCGACTCTGGGATGAACTGATGAAGACAAGGCCTTCCAGTTTGGAAAGTGTGACATGTTGGCGAGCCAA
GTTTATGGAGGCCTTTTTTTCCCATGTTCTACGTGGGACCATTGATGTGTCTTCTGACAGGCGTCTTTGTGATCAGCGGTTCTCACCTCT
TCTGCACAGCTCCCGCCATGTCCGACAGCTCACCATCTGTAACATGCTGCAGGGTGCAACCGAGCTGGTGGCTGAGCCCAACCGCAGGGT
TCTGGAGACCCTGGCCAGCTCCCTGCACACTCTCAAGTTCCGCCACCTGCTGTTCTCTGATGTGGCTGCTCAGCAGTCACTTCGGCAGCT
GTTGCATCAGCTCATTCACCATGGGGCTGTCAGTCAAGTGTCGCTATACTCCTGGCCTGTGCCTGAGTCAGCCCTTTTCATCCTTATTCT
CACCATGAGTGCTGGCTTCTGGCAACCAGGGCCTGGTGGCCCACCCTGCCGCCTCTGTGGAGAGGCCTCCCGAGGCCGGGCCCCATCCCG
AGATGAAGGGTCCCTCTTATTGGGCTCACGTCGGCCCCGCCGGGATGCTGCTGAGCGATGTGCTGCAGCCCTGATGGCCAGCCGGCGTAA
GAGTGAAGCCAAGCAGATGCCCAGAGCTGCACCTGCCACTCGGGTAACACGCCGGAGCACACAGGAGAGCCTGACAGCAGGCGGAACAGA
CCTTAAGAGGGAGCTGCACCCCCCAGCCACCTCCCATGAGGCTCCTGGCACCAAGCGGTCACCTTCTGCTCCAGCAGCCACCTCCTCTGC
CTCTTCTTCTACATCCTCATACAAACGGGCACCAGCTAGCTCAGCCCCACAGCCTAAGCCCCTAAAGCGTTTCAAGCGAGCTGCAGGGAA
GAAGGGTGCTCGCACCCGTCAGGGGCCTGGTGCAGAGTCTGAAGACCTGTATGACTTCGTTTTTATTGTGGCTGGCGAGAAGGAGGATGG
CGAAGAGATGGAGATTGGGGAAGTGGCTTGTGGAGCTTTGGATGGATCAGATCCCAGCTGCCTGGGGCTTCCAGCACTGGAAGCTTCACA
AAGATTCCGCAGCATCTCCACCTTGGAGCTATTCACAGTTCCACTCTCCACAGAGGCAGCCCTGACACTATGCCACCTGCTGAGCTCCTG
GGTGTCACTGGAGAGCCTCACACTCTCCTACAATGGCCTGGGCTCTAACATCTTCCGCCTGCTAGACAGCCTGCGGGCCCTGTCAGGCCA
GGCTGGATGTCGCCTCCGTGCCCTGCATCTCAGTGACCTGTTCTCACCACTGCCCATCCTGGAGCTGACACGTGCTATCGTGCGAGCACT
GCCCCTGCTACGGGTCCTCTCTATTCGTGTTGACCACCCAAGCCAGCGGGACAACCCTGGTGTGCCAGGGAATGCAGGGCCCCCTAGCCA
CATAATAGGCGATGAGGAGATACCAGAAAACTGCCTGGAGCAGTTGGAGATGGGATTTCCACGGGGAGCCCAGCCAGCCCCACTGCTGTG
CTCCGTTCTGAAGGCCTCGGGTTCTCTGCAGCAGCTGTCCCTGGATAGTGCCACCTTTGCCTCTCCCCAGGATTTTGGGCTTGTTTTGCA
AACACTCAAAGAGTACAACCTAGCCCTGAAAAGACTGAGCTTCCATGACATGAATCTCGCTGACTGTCAGAGCGAGGTGCTCTTTTTGCT
ACAGAATCTGACTCTGCAAGAGATTACCTTCTCCTTCTGCCGTCTGTTTGAGAAGCGCCCAGCCCAATTTCTGCCTGAGATGGTTGCTGC
TATGAAGGGCAACTCCACACTGAAGGGCCTCCGGCTGCCAGGGAACCGCCTGGGGAATGCTGGCCTGCTGGCCTTGGCAGATGTTTTCTC
AGAGGATTCATCCTCCTCTCTCTGTCAGCTGGACATCAGTTCCAACTGCATCAAGCCAGATGGGCTTCTGGAGTTCGCCAAGCGGCTGGA
GCGCTGGGGCCGTGGAGCCTTTGGTCACCTGCGCCTCTTCCAAAACTGGCTGGACCAGGATGCAGTCACAGCCAGGGAAGCCATCCGGCG
GCTCCGGGCTACCTGCCATGTGGTTAGCGACTCATGGGACTCATCCCAGGCCTTCGCAGATTATGTTAGCACCATGTGATGGGGCCCGTA
CCTCACAGTCTCATGCTCGGTACCATCAGCTTGCAGGGGCTGAAGCATGGGCTGCCCAGAACCCCAACCACCAGTTCTATCTTTCTCTTT
CTGTCACCTTTTTTCTCTTTTTTCCTTCTTCCCTTGCACTGAGGTCCTGGAGGCCTTGATGAGGCCCAGCAAACAGGCATTCTCACAGCT
GGGTTTATAGTCTTTGGGCCCCTTACTCAGTATCCTGGGAACCCTGGGCCAGGAGGTTACAGTGGTCATCATAATTGCTGAAGAGATCCC
CTCCCCTGCCCCTGGGTTCCTGCCTTCCCTCCTCAAGCAGGCACCCAGGCTTTAGAGAAGTATAGGGGGCTTCTTCCCTGCTGGGCTTAC
CACACTGCTCTCAGGCCTCAAACCCTTTCATACCTTTATTCTTTTTTTTAACCAAAAAAGTTTTTCTTATAAAATAAATTTTGGGCAAAC

>In-frame_ENST00000361776_ENST00000343304_TCGA-20-1684_FOXJ3_chr1_42693553_-_LRRC41_chr1_46764042_length(amino acids)=771AA_start in transcript=643_stop in transcript=2958
MGNRHQSEGRCAAYSAKEEGTICRTALPGPILQSILPLLNIYYLERIEETALKKGLSTQAIWRRLWDELMKTRPSSLESVTCWRAKFMEA
FFSHVLRGTIDVSSDRRLCDQRFSPLLHSSRHVRQLTICNMLQGATELVAEPNRRVLETLASSLHTLKFRHLLFSDVAAQQSLRQLLHQL
IHHGAVSQVSLYSWPVPESALFILILTMSAGFWQPGPGGPPCRLCGEASRGRAPSRDEGSLLLGSRRPRRDAAERCAAALMASRRKSEAK
QMPRAAPATRVTRRSTQESLTAGGTDLKRELHPPATSHEAPGTKRSPSAPAATSSASSSTSSYKRAPASSAPQPKPLKRFKRAAGKKGAR
TRQGPGAESEDLYDFVFIVAGEKEDGEEMEIGEVACGALDGSDPSCLGLPALEASQRFRSISTLELFTVPLSTEAALTLCHLLSSWVSLE
SLTLSYNGLGSNIFRLLDSLRALSGQAGCRLRALHLSDLFSPLPILELTRAIVRALPLLRVLSIRVDHPSQRDNPGVPGNAGPPSHIIGD
EEIPENCLEQLEMGFPRGAQPAPLLCSVLKASGSLQQLSLDSATFASPQDFGLVLQTLKEYNLALKRLSFHDMNLADCQSEVLFLLQNLT
LQEITFSFCRLFEKRPAQFLPEMVAAMKGNSTLKGLRLPGNRLGNAGLLALADVFSEDSSSSLCQLDISSNCIKPDGLLEFAKRLERWGR

--------------------------------------------------------------
>In-frame_ENST00000545068_ENST00000343304_TCGA-20-1684_FOXJ3_chr1_42693553_-_LRRC41_chr1_46764042_length(transcript)=3364nt_BP=659nt
ACAGTTTAGTATGAGATCATTTTCCCTTGCCTGAGTTTTGAGCTGATTGAGAAATAAGAACCTACAGATGAAGAAGCAAGACAGTACCTT
TAAAAAAATTAGCTTTTTATTCAGATTCTCTTTGTGGCCAGATGGGTTTGTATGGACAGGCTTGTCCATCTGTAACTTCATTAAGGATGA
CATCTGAACTGGAGAGCAGCCTAACGTCTATGGACTGGTTACCACAGCTCACCATGAGAGCAGCCATCCAAAAATCTGATGCTACACAAA
ATGCACATGGAACAGGAATTTCTAAGAAGAATGCACTCCTTGACCCAAATACAACTCTGGACCAGGAAGAAGTCCAACAGCACAAAGATG
GGAAACCTCCATACAGTTATGCCAGCCTCATTACATTTGCAATTAATAGCTCACCCAAAAAGAAAATGACTTTAAGTGAAATTTATCAGT
GGATTTGTGATAACTTCCCATATTATAGAGAGGCTGGCAGTGGTTGGAAGAATTCCATACGACATAATCTGTCATTGAACAAATGTTTCC
TTAAAGTGCCTCGATCTAAGGATGACCCTGGAAAGGGGTCCTACTGGGCAATAGACACCAATCCGAAGGAAGATGTGCTGCCTACTCGGC
CAAAGAAGAGGGCACGATCTGTAGAACGGCCCTCCCAGGCCCAATACTTCAAAGCATCCTACCTCTGCTCAATATATATTACTTGGAGAG
GATTGAGGAAACTGCCCTCAAGAAAGGCCTCTCAACTCAGGCCATCTGGCGCCGACTCTGGGATGAACTGATGAAGACAAGGCCTTCCAG
TTTGGAAAGTGTGACATGTTGGCGAGCCAAGTTTATGGAGGCCTTTTTTTCCCATGTTCTACGTGGGACCATTGATGTGTCTTCTGACAG
GCGTCTTTGTGATCAGCGGTTCTCACCTCTTCTGCACAGCTCCCGCCATGTCCGACAGCTCACCATCTGTAACATGCTGCAGGGTGCAAC
CGAGCTGGTGGCTGAGCCCAACCGCAGGGTTCTGGAGACCCTGGCCAGCTCCCTGCACACTCTCAAGTTCCGCCACCTGCTGTTCTCTGA
TGTGGCTGCTCAGCAGTCACTTCGGCAGCTGTTGCATCAGCTCATTCACCATGGGGCTGTCAGTCAAGTGTCGCTATACTCCTGGCCTGT
GCCTGAGTCAGCCCTTTTCATCCTTATTCTCACCATGAGTGCTGGCTTCTGGCAACCAGGGCCTGGTGGCCCACCCTGCCGCCTCTGTGG
AGAGGCCTCCCGAGGCCGGGCCCCATCCCGAGATGAAGGGTCCCTCTTATTGGGCTCACGTCGGCCCCGCCGGGATGCTGCTGAGCGATG
TGCTGCAGCCCTGATGGCCAGCCGGCGTAAGAGTGAAGCCAAGCAGATGCCCAGAGCTGCACCTGCCACTCGGGTAACACGCCGGAGCAC
ACAGGAGAGCCTGACAGCAGGCGGAACAGACCTTAAGAGGGAGCTGCACCCCCCAGCCACCTCCCATGAGGCTCCTGGCACCAAGCGGTC
ACCTTCTGCTCCAGCAGCCACCTCCTCTGCCTCTTCTTCTACATCCTCATACAAACGGGCACCAGCTAGCTCAGCCCCACAGCCTAAGCC
CCTAAAGCGTTTCAAGCGAGCTGCAGGGAAGAAGGGTGCTCGCACCCGTCAGGGGCCTGGTGCAGAGTCTGAAGACCTGTATGACTTCGT
TTTTATTGTGGCTGGCGAGAAGGAGGATGGCGAAGAGATGGAGATTGGGGAAGTGGCTTGTGGAGCTTTGGATGGATCAGATCCCAGCTG
CCTGGGGCTTCCAGCACTGGAAGCTTCACAAAGATTCCGCAGCATCTCCACCTTGGAGCTATTCACAGTTCCACTCTCCACAGAGGCAGC
CCTGACACTATGCCACCTGCTGAGCTCCTGGGTGTCACTGGAGAGCCTCACACTCTCCTACAATGGCCTGGGCTCTAACATCTTCCGCCT
GCTAGACAGCCTGCGGGCCCTGTCAGGCCAGGCTGGATGTCGCCTCCGTGCCCTGCATCTCAGTGACCTGTTCTCACCACTGCCCATCCT
GGAGCTGACACGTGCTATCGTGCGAGCACTGCCCCTGCTACGGGTCCTCTCTATTCGTGTTGACCACCCAAGCCAGCGGGACAACCCTGG
TGTGCCAGGGAATGCAGGGCCCCCTAGCCACATAATAGGCGATGAGGAGATACCAGAAAACTGCCTGGAGCAGTTGGAGATGGGATTTCC
ACGGGGAGCCCAGCCAGCCCCACTGCTGTGCTCCGTTCTGAAGGCCTCGGGTTCTCTGCAGCAGCTGTCCCTGGATAGTGCCACCTTTGC
CTCTCCCCAGGATTTTGGGCTTGTTTTGCAAACACTCAAAGAGTACAACCTAGCCCTGAAAAGACTGAGCTTCCATGACATGAATCTCGC
TGACTGTCAGAGCGAGGTGCTCTTTTTGCTACAGAATCTGACTCTGCAAGAGATTACCTTCTCCTTCTGCCGTCTGTTTGAGAAGCGCCC
AGCCCAATTTCTGCCTGAGATGGTTGCTGCTATGAAGGGCAACTCCACACTGAAGGGCCTCCGGCTGCCAGGGAACCGCCTGGGGAATGC
TGGCCTGCTGGCCTTGGCAGATGTTTTCTCAGAGGATTCATCCTCCTCTCTCTGTCAGCTGGACATCAGTTCCAACTGCATCAAGCCAGA
TGGGCTTCTGGAGTTCGCCAAGCGGCTGGAGCGCTGGGGCCGTGGAGCCTTTGGTCACCTGCGCCTCTTCCAAAACTGGCTGGACCAGGA
TGCAGTCACAGCCAGGGAAGCCATCCGGCGGCTCCGGGCTACCTGCCATGTGGTTAGCGACTCATGGGACTCATCCCAGGCCTTCGCAGA
TTATGTTAGCACCATGTGATGGGGCCCGTACCTCACAGTCTCATGCTCGGTACCATCAGCTTGCAGGGGCTGAAGCATGGGCTGCCCAGA
ACCCCAACCACCAGTTCTATCTTTCTCTTTCTGTCACCTTTTTTCTCTTTTTTCCTTCTTCCCTTGCACTGAGGTCCTGGAGGCCTTGAT
GAGGCCCAGCAAACAGGCATTCTCACAGCTGGGTTTATAGTCTTTGGGCCCCTTACTCAGTATCCTGGGAACCCTGGGCCAGGAGGTTAC
AGTGGTCATCATAATTGCTGAAGAGATCCCCTCCCCTGCCCCTGGGTTCCTGCCTTCCCTCCTCAAGCAGGCACCCAGGCTTTAGAGAAG
TATAGGGGGCTTCTTCCCTGCTGGGCTTACCACACTGCTCTCAGGCCTCAAACCCTTTCATACCTTTATTCTTTTTTTTAACCAAAAAAG

>In-frame_ENST00000545068_ENST00000343304_TCGA-20-1684_FOXJ3_chr1_42693553_-_LRRC41_chr1_46764042_length(amino acids)=771AA_start in transcript=583_stop in transcript=2898
MGNRHQSEGRCAAYSAKEEGTICRTALPGPILQSILPLLNIYYLERIEETALKKGLSTQAIWRRLWDELMKTRPSSLESVTCWRAKFMEA
FFSHVLRGTIDVSSDRRLCDQRFSPLLHSSRHVRQLTICNMLQGATELVAEPNRRVLETLASSLHTLKFRHLLFSDVAAQQSLRQLLHQL
IHHGAVSQVSLYSWPVPESALFILILTMSAGFWQPGPGGPPCRLCGEASRGRAPSRDEGSLLLGSRRPRRDAAERCAAALMASRRKSEAK
QMPRAAPATRVTRRSTQESLTAGGTDLKRELHPPATSHEAPGTKRSPSAPAATSSASSSTSSYKRAPASSAPQPKPLKRFKRAAGKKGAR
TRQGPGAESEDLYDFVFIVAGEKEDGEEMEIGEVACGALDGSDPSCLGLPALEASQRFRSISTLELFTVPLSTEAALTLCHLLSSWVSLE
SLTLSYNGLGSNIFRLLDSLRALSGQAGCRLRALHLSDLFSPLPILELTRAIVRALPLLRVLSIRVDHPSQRDNPGVPGNAGPPSHIIGD
EEIPENCLEQLEMGFPRGAQPAPLLCSVLKASGSLQQLSLDSATFASPQDFGLVLQTLKEYNLALKRLSFHDMNLADCQSEVLFLLQNLT
LQEITFSFCRLFEKRPAQFLPEMVAAMKGNSTLKGLRLPGNRLGNAGLLALADVFSEDSSSSLCQLDISSNCIKPDGLLEFAKRLERWGR

--------------------------------------------------------------

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Fusion Gene PPI Analysis for FOXJ3-LRRC41


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page.


check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with
TgeneLRRC41chr1:42693553chr1:46764042ENST0000034330401045_5466.33333333333333813.0Elongin BC complex
TgeneLRRC41chr1:42693554chr1:46764042ENST0000034330401045_5466.33333333333333813.0Elongin BC complex


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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Related Drugs for FOXJ3-LRRC41


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.8 2021-05-08)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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Related Diseases for FOXJ3-LRRC41


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource