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Fusion Gene Summary | |
Fusion Gene ORF analysis | |
Fusion Genomic Features | |
Fusion Protein Features | |
Fusion Gene Sequence | |
Fusion Gene PPI analysis | |
Related Drugs | |
Related Diseases |
Fusion gene:GABARAP-MYOCD (FusionGDB2 ID:31946) |
Fusion Gene Summary for GABARAP-MYOCD |
Fusion gene summary |
Fusion gene information | Fusion gene name: GABARAP-MYOCD | Fusion gene ID: 31946 | Hgene | Tgene | Gene symbol | GABARAP | MYOCD | Gene ID | 11337 | 93649 |
Gene name | GABA type A receptor-associated protein | myocardin | |
Synonyms | ATG8A|GABARAP-a|MM46 | MGBL|MYCD | |
Cytomap | 17p13.1 | 17p12 | |
Type of gene | protein-coding | protein-coding | |
Description | gamma-aminobutyric acid receptor-associated proteinGABA(A) receptor-associated proteinepididymis secretory sperm binding protein | myocardin | |
Modification date | 20200329 | 20200313 | |
UniProtAcc | O95166 | Q8IZQ8 | |
Ensembl transtripts involved in fusion gene | ENST00000302386, ENST00000577035, ENST00000571129, ENST00000571253, ENST00000573928, | ENST00000425538, ENST00000343344, ENST00000395988, | |
Fusion gene scores | * DoF score | 8 X 11 X 5=440 | 6 X 4 X 4=96 |
# samples | 10 | 7 | |
** MAII score | log2(10/440*10)=-2.13750352374993 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(7/96*10)=-0.45567948377619 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
Context | PubMed: GABARAP [Title/Abstract] AND MYOCD [Title/Abstract] AND fusion [Title/Abstract] | ||
Most frequent breakpoint | GABARAP(7144661)-MYOCD(12639478), # samples:2 | ||
Anticipated loss of major functional domain due to fusion event. | GABARAP-MYOCD seems lost the major protein functional domain in Hgene partner, which is a tumor suppressor due to the frame-shifted ORF. GABARAP-MYOCD seems lost the major protein functional domain in Hgene partner, which is a essential gene due to the frame-shifted ORF. |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
Partner | Gene | GO ID | GO term | PubMed ID |
Hgene | GABARAP | GO:0008625 | extrinsic apoptotic signaling pathway via death domain receptors | 15977068 |
Tgene | MYOCD | GO:0003257 | positive regulation of transcription from RNA polymerase II promoter involved in myocardial precursor cell differentiation | 15907818 |
Tgene | MYOCD | GO:0008285 | negative regulation of cell proliferation | 18451334 |
Tgene | MYOCD | GO:0045736 | negative regulation of cyclin-dependent protein serine/threonine kinase activity | 18451334 |
Tgene | MYOCD | GO:0045893 | positive regulation of transcription, DNA-templated | 19797053 |
Tgene | MYOCD | GO:0045944 | positive regulation of transcription by RNA polymerase II | 14970199|17215356|19578358 |
Tgene | MYOCD | GO:0045987 | positive regulation of smooth muscle contraction | 17215356 |
Tgene | MYOCD | GO:0051091 | positive regulation of DNA-binding transcription factor activity | 19098903 |
Tgene | MYOCD | GO:0051152 | positive regulation of smooth muscle cell differentiation | 18451334 |
Tgene | MYOCD | GO:2000721 | positive regulation of transcription from RNA polymerase II promoter involved in smooth muscle cell differentiation | 15907818 |
Tgene | MYOCD | GO:2000727 | positive regulation of cardiac muscle cell differentiation | 18451334 |
Tgene | MYOCD | GO:2001015 | negative regulation of skeletal muscle cell differentiation | 18451334 |
Fusion gene breakpoints across GABARAP (5'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
Fusion gene breakpoints across MYOCD (3'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Source | Disease | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
ChimerDB4 | BRCA | TCGA-EW-A1OZ-01A | GABARAP | chr17 | 7144661 | - | MYOCD | chr17 | 12639478 | + |
ChimerDB4 | BRCA | TCGA-EW-A1OZ-01A | GABARAP | chr17 | 7144661 | - | MYOCD | chr17 | 12639478 | + |
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Fusion Gene ORF analysis for GABARAP-MYOCD |
Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
Frame-shift | ENST00000302386 | ENST00000425538 | GABARAP | chr17 | 7144661 | - | MYOCD | chr17 | 12639478 | + |
Frame-shift | ENST00000302386 | ENST00000343344 | GABARAP | chr17 | 7144661 | - | MYOCD | chr17 | 12639478 | + |
5CDS-3UTR | ENST00000302386 | ENST00000395988 | GABARAP | chr17 | 7144661 | - | MYOCD | chr17 | 12639478 | + |
Frame-shift | ENST00000577035 | ENST00000425538 | GABARAP | chr17 | 7144661 | - | MYOCD | chr17 | 12639478 | + |
Frame-shift | ENST00000577035 | ENST00000343344 | GABARAP | chr17 | 7144661 | - | MYOCD | chr17 | 12639478 | + |
5CDS-3UTR | ENST00000577035 | ENST00000395988 | GABARAP | chr17 | 7144661 | - | MYOCD | chr17 | 12639478 | + |
In-frame | ENST00000571129 | ENST00000425538 | GABARAP | chr17 | 7144661 | - | MYOCD | chr17 | 12639478 | + |
In-frame | ENST00000571129 | ENST00000343344 | GABARAP | chr17 | 7144661 | - | MYOCD | chr17 | 12639478 | + |
5CDS-3UTR | ENST00000571129 | ENST00000395988 | GABARAP | chr17 | 7144661 | - | MYOCD | chr17 | 12639478 | + |
In-frame | ENST00000571253 | ENST00000425538 | GABARAP | chr17 | 7144661 | - | MYOCD | chr17 | 12639478 | + |
In-frame | ENST00000571253 | ENST00000343344 | GABARAP | chr17 | 7144661 | - | MYOCD | chr17 | 12639478 | + |
5CDS-3UTR | ENST00000571253 | ENST00000395988 | GABARAP | chr17 | 7144661 | - | MYOCD | chr17 | 12639478 | + |
intron-3CDS | ENST00000573928 | ENST00000425538 | GABARAP | chr17 | 7144661 | - | MYOCD | chr17 | 12639478 | + |
intron-3CDS | ENST00000573928 | ENST00000343344 | GABARAP | chr17 | 7144661 | - | MYOCD | chr17 | 12639478 | + |
intron-3UTR | ENST00000573928 | ENST00000395988 | GABARAP | chr17 | 7144661 | - | MYOCD | chr17 | 12639478 | + |
ORFfinder result based on the fusion transcript sequence of in-frame fusion genes. |
Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | Seq length (transcript) | BP loci (transcript) | Predicted start (transcript) | Predicted stop (transcript) | Seq length (amino acids) |
ENST00000571129 | GABARAP | chr17 | 7144661 | - | ENST00000425538 | MYOCD | chr17 | 12639478 | + | 8127 | 276 | 437 | 2821 | 794 |
ENST00000571129 | GABARAP | chr17 | 7144661 | - | ENST00000343344 | MYOCD | chr17 | 12639478 | + | 2678 | 276 | 437 | 2677 | 747 |
ENST00000571253 | GABARAP | chr17 | 7144661 | - | ENST00000425538 | MYOCD | chr17 | 12639478 | + | 8622 | 771 | 932 | 3316 | 794 |
ENST00000571253 | GABARAP | chr17 | 7144661 | - | ENST00000343344 | MYOCD | chr17 | 12639478 | + | 3173 | 771 | 932 | 3172 | 747 |
DeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated. |
Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | No-coding score | Coding score |
ENST00000571129 | ENST00000425538 | GABARAP | chr17 | 7144661 | - | MYOCD | chr17 | 12639478 | + | 0.001045918 | 0.99895406 |
ENST00000571129 | ENST00000343344 | GABARAP | chr17 | 7144661 | - | MYOCD | chr17 | 12639478 | + | 0.019586623 | 0.9804134 |
ENST00000571253 | ENST00000425538 | GABARAP | chr17 | 7144661 | - | MYOCD | chr17 | 12639478 | + | 0.00097989 | 0.9990201 |
ENST00000571253 | ENST00000343344 | GABARAP | chr17 | 7144661 | - | MYOCD | chr17 | 12639478 | + | 0.012219029 | 0.9877809 |
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Fusion Genomic Features for GABARAP-MYOCD |
FusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints. |
Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | 1-p | p (fusion gene breakpoint) |
GABARAP | chr17 | 7144660 | - | MYOCD | chr17 | 12639477 | + | 0.000139624 | 0.9998604 |
GABARAP | chr17 | 7144660 | - | MYOCD | chr17 | 12639477 | + | 0.000139624 | 0.9998604 |
Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page. |
Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page. |
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Fusion Protein Features for GABARAP-MYOCD |
Go to FGviewer for the breakpoints of chr17:7144661-chr17:12639478 - FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels. |
Main function of each fusion partner protein. (from UniProt) |
Hgene | Tgene |
GABARAP | MYOCD |
FUNCTION: Ubiquitin-like modifier that plays a role in intracellular transport of GABA(A) receptors and its interaction with the cytoskeleton (PubMed:9892355). Involved in autophagy: while LC3s are involved in elongation of the phagophore membrane, the GABARAP/GATE-16 subfamily is essential for a later stage in autophagosome maturation (PubMed:15169837, PubMed:20562859, PubMed:22948227). Through its interaction with the reticulophagy receptor TEX264, participates in the remodeling of subdomains of the endoplasmic reticulum into autophagosomes upon nutrient stress, which then fuse with lysosomes for endoplasmic reticulum turnover (PubMed:31006538). Involved in apoptosis (PubMed:15977068). {ECO:0000269|PubMed:15169837, ECO:0000269|PubMed:15977068, ECO:0000269|PubMed:20562859, ECO:0000269|PubMed:22948227, ECO:0000269|PubMed:31006538, ECO:0000269|PubMed:9892355}. | FUNCTION: Smooth muscle cells (SM) and cardiac muscle cells-specific transcriptional factor which uses the canonical single or multiple CArG boxes DNA sequence. Acts as a cofactor of serum response factor (SRF) with the potential to modulate SRF-target genes. Plays a crucial role in cardiogenesis, urinary bladder development, and differentiation of the smooth muscle cell lineage (myogenesis) (By similarity). {ECO:0000250, ECO:0000269|PubMed:12640126, ECO:0000269|PubMed:31513549}. |
Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Tgene | MYOCD | chr17:7144661 | chr17:12639478 | ENST00000343344 | 4 | 13 | 516_561 | 138.33333333333334 | 939.0 | Coiled coil | Ontology_term=ECO:0000255 | |
Tgene | MYOCD | chr17:7144661 | chr17:12639478 | ENST00000425538 | 4 | 14 | 516_561 | 138.33333333333334 | 987.0 | Coiled coil | Ontology_term=ECO:0000255 | |
Tgene | MYOCD | chr17:7144661 | chr17:12639478 | ENST00000343344 | 4 | 13 | 291_322 | 138.33333333333334 | 939.0 | Compositional bias | Note=Gln-rich | |
Tgene | MYOCD | chr17:7144661 | chr17:12639478 | ENST00000343344 | 4 | 13 | 435_508 | 138.33333333333334 | 939.0 | Compositional bias | Note=Ser-rich | |
Tgene | MYOCD | chr17:7144661 | chr17:12639478 | ENST00000425538 | 4 | 14 | 291_322 | 138.33333333333334 | 987.0 | Compositional bias | Note=Gln-rich | |
Tgene | MYOCD | chr17:7144661 | chr17:12639478 | ENST00000425538 | 4 | 14 | 435_508 | 138.33333333333334 | 987.0 | Compositional bias | Note=Ser-rich | |
Tgene | MYOCD | chr17:7144661 | chr17:12639478 | ENST00000343344 | 4 | 13 | 371_405 | 138.33333333333334 | 939.0 | Domain | SAP | |
Tgene | MYOCD | chr17:7144661 | chr17:12639478 | ENST00000425538 | 4 | 14 | 371_405 | 138.33333333333334 | 987.0 | Domain | SAP | |
Tgene | MYOCD | chr17:7144661 | chr17:12639478 | ENST00000343344 | 4 | 13 | 153_205 | 138.33333333333334 | 939.0 | Region | HDAC5-binding | |
Tgene | MYOCD | chr17:7144661 | chr17:12639478 | ENST00000425538 | 4 | 14 | 153_205 | 138.33333333333334 | 987.0 | Region | HDAC5-binding |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Tgene | MYOCD | chr17:7144661 | chr17:12639478 | ENST00000343344 | 4 | 13 | 12_27 | 138.33333333333334 | 939.0 | Motif | MEF2C-binding | |
Tgene | MYOCD | chr17:7144661 | chr17:12639478 | ENST00000425538 | 4 | 14 | 12_27 | 138.33333333333334 | 987.0 | Motif | MEF2C-binding | |
Tgene | MYOCD | chr17:7144661 | chr17:12639478 | ENST00000343344 | 4 | 13 | 106_131 | 138.33333333333334 | 939.0 | Repeat | Note=RPEL 3 | |
Tgene | MYOCD | chr17:7144661 | chr17:12639478 | ENST00000343344 | 4 | 13 | 18_43 | 138.33333333333334 | 939.0 | Repeat | Note=RPEL 1 | |
Tgene | MYOCD | chr17:7144661 | chr17:12639478 | ENST00000343344 | 4 | 13 | 62_87 | 138.33333333333334 | 939.0 | Repeat | Note=RPEL 2 | |
Tgene | MYOCD | chr17:7144661 | chr17:12639478 | ENST00000425538 | 4 | 14 | 106_131 | 138.33333333333334 | 987.0 | Repeat | Note=RPEL 3 | |
Tgene | MYOCD | chr17:7144661 | chr17:12639478 | ENST00000425538 | 4 | 14 | 18_43 | 138.33333333333334 | 987.0 | Repeat | Note=RPEL 1 | |
Tgene | MYOCD | chr17:7144661 | chr17:12639478 | ENST00000425538 | 4 | 14 | 62_87 | 138.33333333333334 | 987.0 | Repeat | Note=RPEL 2 |
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Fusion Gene Sequence for GABARAP-MYOCD |
For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones. |
>In-frame_ENST00000571129_ENST00000425538_TCGA-EW-A1OZ-01A_GABARAP_chr17_7144661_-_MYOCD_chr17_12639478_length(transcript)=8127nt_BP=276nt GATCAGGCTGCTGGCTGTGGTGGGGTTGGCAGCGAGCCTGAAACTGCTGTCCTTGGGACCCAGGATGAAAGGAGTGGGGTGATAGTAGAA AAGGCTCCCAAAGCTCGGATAGGAGACCTGGACAAAAAGAAATACCTGGTGCCTTCTGATCTCACAGTTGGTCAGTTCTACTTCTTGATC CGGAAGCGAATTCATCTCCGAGCTGAGGATGCCTTGTTTTTCTTTGTCAACAATGTCATTCCACCCACCAGTGCCACAATGGGTCAGCTG TACCAGGTAACCAGGTGAGTTTCTCCAAATCCACGGATGCTTTTGCCTTTGAAGAGGACAGCAGCAGCGATGGGCTTTCTCCGGATCAGA CTCGAAGTGAAGACCCCCAAAACTCAGCGGGATCCCCGCCAGACGCTAAAGCCTCAGATACCCCTTCGACAGGTTCTCTGGGGACAAACC AGGATCTTGCTTCTGGCTCAGAAAATGACAGAAATGACTCAGCCTCACAGCCCAGCCACCAGTCAGATGCGGGGAAGCAGGGGCTTGGCC CCCCCAGCACCCCCATAGCCGTGCATGCTGCTGTAAAGTCCAAATCCTTGGGTGACAGTAAGAACCGCCACAAAAAGCCCAAGGACCCCA AGCCAAAGGTGAAGAAGCTTAAATATCACCAGTACATTCCCCCAGACCAGAAGGCAGAGAAGTCCCCTCCACCTATGGACTCAGCCTACG CTCGGCTGCTCCAGCAACAGCAGCTGTTCCTGCAGCTCCAAATCCTCAGCCAGCAGCAGCAGCAGCAGCAACACCGATTCAGCTACCTAG GGATGCACCAAGCTCAGCTTAAGGAACCAAATGAACAGATGGTCAGAAATCCAAACTCTTCTTCAACGCCACTGAGCAATACCCCCTTGT CTCCTGTCAAAAACAGTTTTTCTGGACAAACTGGTGTCTCTTCTTTCAAACCAGGCCCACTCCCACCTAACCTGGATGATCTGAAGGTCT CTGAATTAAGACAACAGCTTCGAATTCGGGGCTTGCCTGTGTCAGGCACCAAAACGGCTCTCATGGACCGGCTTCGACCCTTCCAGGACT GCTCTGGCAACCCAGTGCCGAACTTTGGGGATATAACGACTGTCACTTTTCCTGTCACACCCAACACGCTGCCCAATTACCAGTCTTCCT CTTCTACCAGTGCCCTGTCCAACGGCTTCTACCACTTTGGCAGCACCAGCTCCAGCCCCCCGATCTCCCCAGCCTCCTCTGACCTGTCAG TCGCTGGGTCCCTGCCGGACACCTTCAATGATGCCTCCCCCTCCTTCGGCCTGCACCCGTCCCCAGTCCACGTGTGCACGGAGGAAAGTC TCATGAGCAGCCTGAATGGGGGCTCTGTTCCTTCTGAGCTGGATGGGCTGGACTCCGAGAAGGACAAGATGCTGGTGGAGAAGCAGAAGG TGATCAATGAACTCACCTGGAAACTCCAGCAAGAGCAGAGGCAGGTGGAGGAGCTGAGGATGCAGCTTCAGAAGCAGAAAAGGAATAACT GTTCAGAGAAGAAGCCGCTGCCTTTCCTGGCTGCCTCCATCAAGCAGGAAGAGGCTGTCTCCAGCTGTCCTTTTGCATCCCAAGTACCTG TGAAAAGACAAAGCAGCAGCTCAGAGTGTCACCCACCGGCTTGTGAAGCTGCTCAACTCCAGCCTCTTGGAAATGCTCATTGTGTGGAGT CCTCAGATCAAACCAATGTACTTTCTTCCACATTTCTCAGCCCCCAGTGTTCCCCTCAGCATTCACCGCTGGGGGCTGTGAAAAGCCCAC AGCACATCAGTTTGCCCCCATCACCCAACAACCCTCACTTTCTGCCCTCATCCTCCGGGGCCCAGGGAGAAGGGCACAGGGTCTCCTCGC CCATCAGCAGCCAGGTGTGCACTGCACAGAACTCAGGAGCACACGATGGCCATCCTCCAAGCTTCTCTCCCCATTCTTCCAGCCTCCACC CGCCCTTCTCTGGAGCCCAAGCAGACAGCAGTCATGGTGCCGGGGGAAACCCTTGTCCCAAAAGCCCATGTGTACAGCAAAAGATGGCTG GTTTACACTCTTCTGATAAGGTGGGGCCAAAGTTTTCAATTCCATCCCCAACTTTTTCTAAGTCAAGTTCAGCAATTTCAGAGGTAACAC AGCCTCCATCCTATGAAGATGCCGTAAAGCAGCAAATGACCCGGAGTCAGCAGATGGATGAACTCCTGGACGTGCTTATTGAAAGCGGAG AAATGCCAGCAGACGCTAGAGAGGATCACTCATGTCTTCAAAAAGTCCCAAAGATACCCAGATCTTCCCGAAGTCCAACTGCTGTCCTCA CCAAGCCCTCGGCTTCCTTTGAACAAGCCTCTTCAGGCAGCCAGATCCCCTTTGATCCCTATGCCACCGACAGTGATGAGCATCTTGAAG TCTTATTAAATTCCCAGAGCCCCCTAGGAAAGATGAGTGATGTCACCCTTCTAAAAATTGGGAGCGAAGAGCCTCACTTTGATGGGATAA TGGATGGATTCTCTGGGAAGGCTGCAGAAGACCTCTTCAATGCACATGAGATCTTGCCAGGCCCCCTCTCTCCAATGCAGACACAGTTTT CACCCTCTTCTGTGGACAGCAATGGGCTGCAGTTAAGCTTCACTGAATCTCCCTGGGAAACCATGGAGTGGCTGGACCTCACTCCGCCAA ATTCCACACCAGGCTTTAGCGCCCTCACCACCAGCAGCCCCAGCATCTTCAACATCGATTTCCTGGATGTCACTGATCTCAATTTGAATT CTTCCATGGACCTTCACTTGCAGCAGTGGTAGAATGCCCAATGCACCAGTGCTATGGAAGACCAATGGAGTTCCATGGGGGAAAGCACAC AGCCATACATACTTTACTGTCCAAAAACAGAAGAAGAAGAAGAGAATTAAAAAGAAGCAATGATTTCTGTGCCAATGAACAAGAACAAAA GTCATTTTTAGAAATACATATACTGTAATATTTACCAACAGTCAGTAACTGTTAATGATTTCAACAATGCATTAAAAGAATGTGCTTTCT CAGATTAAGGATGCCAAAAAAGATATTTCACTGCCTTTTCAAAGACCAGTATATTTTCTAGCCCATAATTTTTCTCAGGCATTGTTGGGG CATAAGCTCACACTGTAAGCTTTTCTCATGAATTCACTAGACATAACGTGGAAGGAAAACGTAGTCTTTTGGGAGTACAGGGAAGCCAGC CCCTCAAAGCTTATGGAAGACATACCTGCAATGGAAGCTGTTGCCCAATGTCTCCATTACTATCTTTCAAAAGAGAAGCCAGACCCAGCT TCAGATCAAAAGTTCTTGAGACAGAGGAACAAAACCAATCGATTTCCAGGGAAGCTAATCAACTCTCTTTTCCCTCTACCACAAAACTGC CCTGCTGGAGTGGTTCTGAACCTGTACCCAGGACTCGATGTGGTCACTAATAACAATTAACCTGAACTGAGTCCACAGAACTCCACTCGG AACTTTCTTCTTTTTTAACTAGTGGCCCAATCATTCCCACCATCTCTGTGCTGATAAGTACGTGTCCTAGATGAGAACCCTGAAGAATGC AGACCTTCTTCCCCCGAAGGAGATGCCACAAGCTCTCCAACACAGCCCCCTTTAGTTCCAAAGACTAGAGATGACCACATTGGTAGAAGT ATATCTCGAGGCACAGGAAGGGAGCCCCACCAGGGATAATTCAGACAGGACTAGAGAATAACATCATTTCACATACCCTGGGATAAACAC CCTGGGTTCCTATAGAAGGACTATTACTTATGGGAGTCCAACTTCTCCTTTTGTTTTGTTATTATCAGTTTATCTTTCTCCCACTCCACT TTTCCTTCAAGGTACCAATCCTTTCCTGTTCCTCGTTTGGCCATCTTTCTTTTTCTGCCTCCACATTGGGAGGGGAGGACTTCTCAGTTC TAACAAGCTGCCATACTCCTAAGAAAGCCATTTTTGAAAAATTTAACAATCCAGGTTCTTCTGGAGAACTCATTCTCCACACGCACAGTT TGCTGCAAAAGGAAGTTGCAAGAATTTCTTGAGGAAGAAACTGGTGACTTGGTCCATCAGTCACGAAGTTCTTTCTATTCTCGTTTAGTT TTCAAGAAATTATTGGTTTGTGTTGCTCTGGGGAAATTGGAAATCATTACATTGTAAAGACAAATATGGATGATATTTACAAGAGAGAAT TTCAGATCTGGGTTTTTGAAAGAAAACAGAATTGCGCATTGAAAACGATGGAAGGAAAAAGACAATGGTCTAATGTGCATTCCTCATTAC CTCTCGTGGCTTTGGCTGGGAGTTGGAAAAAGCTAAAATTTCAGAACAGTCTCTGTAAGGCTCTCTGTGGCTCCAGTTCACCATTTTATA TTGTTGCATGCTGTAGAAAGGAGCTATTGCTGTTGTTTTGTTTTTTTATTTAAATCACTAAGGCACTGTTTTTATCTTTTGTAAAAAAAA AAAAAAAGTTGTTCACTGTGCACTTATAGAAAAAATAATCAAAAATGTTGGGATTTTAGAAGCTCTCTTTTTGATAAACCAAAGATTTAG AAGTCATTCCATTGTTAACTTGTAAAAATGTGTGAACACAGAGAGTTTTTGGTGATTGCTACTCTGAAAGCTGCCAGATCTTATTCTGGG GGTGGGATGTGGAGGAATACACATACACACACAAACATACATGTATGTATAATAGATATATACATATGTGTATATTATATCTGTGTGTGC ATGTATCTCCAAAAGCGGCGTTACAGAGTTCTACACCAAAAGCCTTTAACCCTTAATCTGCTGTGAATGATACCTGGCCTTTCTCACTAT GAATTTCTGATTAACCAACCAGACTACACGTTGCCTCTCTGTGTATGACTAACGGCTCCAACCCGATGACTCACAGCTACTTGCTTATCG TGAACAAGCTCATCTTGGCAATGAATATGGATGTGAAAAGACAGAACAGCTTCACCATTAGTAGCTGGAAATGGTATCACAGTCTCTTAT AGAGGAATATGAAAGGAACAAGAAAATCATTTTACATTCCTTTTATCTGTATTGTGCTTTAAAAGATCCACATGGTAAATTTTTTATTTT GCTTTTATGTCAGTCATCAGAACCAAAAAAATCCAGAAGAAAAAATTGCCAGTGTTTCCTTTGAAGATGAAGCTACTGGGGAAGAAAACC TTATTAATACACTCCACACATTTGTTCATTCCTCAGCTGTTGGTGTTTTCTTGGGGTCTTGACAAAGCTTGCTGGTCAGTGCACTTTTCA GGTGTCACGTTTTGCTGTTTGTATGTTTTTTCTTCCCCTTACTTCCTTTGGAAAACAAACTCACACAGTGCCCCTACTCTGAGACCTGGG ACTGAGTGTTAATTATTTTTTCCTTGGGTATTTCTATCTGAGAGACTAGACCTAGTTAGGAGGCCTCTGTACTTCTCCAGATTGTACCTT TTTATGGGGATCTTTGAGGCTATGACCCAGGACTGATAGATATGCCTTACGGAAGACAAAAGATAAAATGGTTCCTATATCCTAATGCAA ACCAACACAGTTAAAAGAGCAGATCTCTGGATAACTGCTCTCAACCTGCTTCTACAGTCTCCACAAACCGCATTCACCCTCTCTCTTCAT AGCTCAGACATGAAATTTGAGGGAGAAAACTGGAGATAATTGGGAGAAAATTGATGAAGTTGGCTGCTTCCAGTAGATCAGATAATCCAT GAATTTGTCTCCCATTGAGAATTTTATTTTAAATTCTTTTAAACTCTTCGTTGTGTCTTTTGTGATGACAAATCAGGCATGACTAAAAGA TGTACAGAGACTTACGAAGATGGTCACATTCAAGTTCCCTAATGCTCTTAGAACCTGAAGATGACCATGTGTAGTTTTCTTAAGACCTCT GAACCCCCATGGTGATGAAGACTTGAAGACATTTGCAGCTATCTGCTGCAGTCTGGTAGATTCATACTTATCTAAAGAAGTCAAAAAATT TATTCGTGCAAGTGCTTGCAGGAAGCCAGTGCTTATTAGTAGTGACCCTGCTTCTATCAACGTTATTGAGACAACACATATTCTATTCTA AGGGAGAAAGAGGGAGGAAGAGAGGGAGGGAGGGAGGAAGAAGAGGGAGGGAGCGAGGAAGGAAGATAGGAGATGGGTAGGGGGGTAAAG AGAAAAGGAGGGAGAAGGGAAGGAAGGAAAGAAGAGAGGAAAGAAAGGAGGGAAGGAAAAAAGGGCCAAACTTTCTGATCTATGAACTTC TCAGTTCAGCTGTCACATTATGAGAAGTAAATCAGAATTTTTTTAAGGAGAAGTCATTCTTAGCACTACAATAATTGTACCAGTAATTGA GGAAACCAAGACAATCTTCACCTGAATAATAGAGGGTCTGAGAACTGTCAGCCTTTTGCCATTCAAAAACATTTATGTCCAACCTGAAAA AAAAGCATCAATAAAACCTATCCCAAGCATTCAAAATAGTCCTTTCCAAATGTTATTTATTTTAAAGTCAATCAGCTCTTTTAGAAACAG ATTCTGGTCTGGCTGAAAACTCCCACAACAAATTTACTCATCCAGTGGCTAATATTTAATGCCCACCATGGGCAGAGCACACAAATCTTC AGATAAACAATACTGAATTGATTCAGCACAGATTGTTCAGATTTGAATGACCAGGGAGTTGTATTTGCACATGCAAGAACACTAAGAATC TCCCAGTCCTCAAACTAGAAACCTTTCAGCTACGATGAAAAAAAAAAAGGGGTCTTCATTTTTCCAAGAGGGGGTGGAGGTGGGGATCAC TTTTTAGCTAAAAGCTATCTCTCACTTCAAAATTCTTGTCTTTTTCTTTGTGGACAAACACCAGTAGTCTATCACTTGGAGATCTTTTAA TATCTCCCATCATTTAAAACATCCACGAGAGTTTGAAGATTTGTGTTGATTGCCAGATACAGAAGCCCCTTGAAAATAAGGAAAGGGTGG AGGAAGCATTTTTGTGTCCTATCCCTACTTATCGTAGCAGCTCTATAGACAAAAGGGACACTTACTGGTGAGCCTCTGGCCCTTAAAAGA AAATCATCTAAGAATATGAAGGCAATTTGATTTCCCCCCACAGCCCTCAGCTGCCTTCCTCACAGAAGGAAGTTCCCAAAATTGCTGGTA CACAGTTTGCAATCAAATATCAGATATGAGAAAACCTGTAGTGAAGAGTCTGGGTTCTTGGTTTTCTCATAAATCCAATATAAATTTGTA GGTTGGTTCAGGGTCAAAATTGCCAGTGCTTTATTAGACAGATGATACTGATAGACACACAGAGCCCAGGTCCTGGAACAAGACAATCCT GTAGTGCCAAGATCTGGTCAGTTGCGTTAAGGAGCTGGGTTTGATTCTAGAGTCCAGGTTTATAGAGAAACCCTGGCTAGATTGAGCCTA CCCATGGGGAGACGATTTCAAGACAGGATGAGATCTGGGAAGAATTTTGTTGTCATCTGCCAGGGAAATTATCACAGGACTCATTGAATG CAATAACATGTGAGTAAGTTCCCTTTTGATTCTGGGAATCAGCGATTTTCCCTGTGGATTAAGACAAACCAACGCCAGAAGGTCTCCTGT GCTTATTTTAACCATCTGCTCCCATCGTGAACCCTGGAGCATGCATTTCCTAGAAGTGGTTTCATAGCTCCTGTGTGTTCATGGAAAAGG GGAGTATAATGATGGGGATGCTGGAAGCTTTTTTAATGTTTTCCAAAGGAAAGGAACCCACACTGCTCCCCAGAGTTCCTTTCCAATGGC CCTGCAGTAAGAACGGAGGACAATGTATTGCTGGGTGCTTAAAATCCTCCCTCAGTGAAGCACAAAGAGACACTTTGTAAAGAAAAAAAG AGCAAGCATAGGTTCTCTGTGGGACCTTGTGGAGTGGTGTTTTCACGTTGGTCTCTTTGGCTCAATTGAGCATAATCAGAAAGAAATGTG GGTTATTGGGAAGAGACAAAAAGCAGTGGCTAAAATACCAAAGTTGGCATGTGTTCTTTTTTAAAAAAAAAAAAAAATGCATATATTTTT >In-frame_ENST00000571129_ENST00000425538_TCGA-EW-A1OZ-01A_GABARAP_chr17_7144661_-_MYOCD_chr17_12639478_length(amino acids)=794AA_start in transcript=437_stop in transcript=2821 MGTNQDLASGSENDRNDSASQPSHQSDAGKQGLGPPSTPIAVHAAVKSKSLGDSKNRHKKPKDPKPKVKKLKYHQYIPPDQKAEKSPPPM DSAYARLLQQQQLFLQLQILSQQQQQQQHRFSYLGMHQAQLKEPNEQMVRNPNSSSTPLSNTPLSPVKNSFSGQTGVSSFKPGPLPPNLD DLKVSELRQQLRIRGLPVSGTKTALMDRLRPFQDCSGNPVPNFGDITTVTFPVTPNTLPNYQSSSSTSALSNGFYHFGSTSSSPPISPAS SDLSVAGSLPDTFNDASPSFGLHPSPVHVCTEESLMSSLNGGSVPSELDGLDSEKDKMLVEKQKVINELTWKLQQEQRQVEELRMQLQKQ KRNNCSEKKPLPFLAASIKQEEAVSSCPFASQVPVKRQSSSSECHPPACEAAQLQPLGNAHCVESSDQTNVLSSTFLSPQCSPQHSPLGA VKSPQHISLPPSPNNPHFLPSSSGAQGEGHRVSSPISSQVCTAQNSGAHDGHPPSFSPHSSSLHPPFSGAQADSSHGAGGNPCPKSPCVQ QKMAGLHSSDKVGPKFSIPSPTFSKSSSAISEVTQPPSYEDAVKQQMTRSQQMDELLDVLIESGEMPADAREDHSCLQKVPKIPRSSRSP TAVLTKPSASFEQASSGSQIPFDPYATDSDEHLEVLLNSQSPLGKMSDVTLLKIGSEEPHFDGIMDGFSGKAAEDLFNAHEILPGPLSPM -------------------------------------------------------------- >In-frame_ENST00000571129_ENST00000343344_TCGA-EW-A1OZ-01A_GABARAP_chr17_7144661_-_MYOCD_chr17_12639478_length(transcript)=2678nt_BP=276nt GATCAGGCTGCTGGCTGTGGTGGGGTTGGCAGCGAGCCTGAAACTGCTGTCCTTGGGACCCAGGATGAAAGGAGTGGGGTGATAGTAGAA AAGGCTCCCAAAGCTCGGATAGGAGACCTGGACAAAAAGAAATACCTGGTGCCTTCTGATCTCACAGTTGGTCAGTTCTACTTCTTGATC CGGAAGCGAATTCATCTCCGAGCTGAGGATGCCTTGTTTTTCTTTGTCAACAATGTCATTCCACCCACCAGTGCCACAATGGGTCAGCTG TACCAGGTAACCAGGTGAGTTTCTCCAAATCCACGGATGCTTTTGCCTTTGAAGAGGACAGCAGCAGCGATGGGCTTTCTCCGGATCAGA CTCGAAGTGAAGACCCCCAAAACTCAGCGGGATCCCCGCCAGACGCTAAAGCCTCAGATACCCCTTCGACAGGTTCTCTGGGGACAAACC AGGATCTTGCTTCTGGCTCAGAAAATGACAGAAATGACTCAGCCTCACAGCCCAGCCACCAGTCAGATGCGGGGAAGCAGGGGCTTGGCC CCCCCAGCACCCCCATAGCCGTGCATGCTGCTGTAAAGTCCAAATCCTTGGGTGACAGTAAGAACCGCCACAAAAAGCCCAAGGACCCCA AGCCAAAGGTGAAGAAGCTTAAATATCACCAGTACATTCCCCCAGACCAGAAGGCAGAGAAGTCCCCTCCACCTATGGACTCAGCCTACG CTCGGCTGCTCCAGCAACAGCAGCTGTTCCTGCAGCTCCAAATCCTCAGCCAGCAGCAGCAGCAGCAGCAACACCGATTCAGCTACCTAG GGATGCACCAAGCTCAGCTTAAGGAACCAAATGAACAGATGGTCAGAAATCCAAACTCTTCTTCAACGCCACTGAGCAATACCCCCTTGT CTCCTGTCAAAAACAGTTTTTCTGGACAAACTGGTGTCTCTTCTTTCAAACCAGGCCCACTCCCACCTAACCTGGATGATCTGAAGGTCT CTGAATTAAGACAACAGCTTCGAATTCGGGGCTTGCCTGTGTCAGGCACCAAAACGGCTCTCATGGACCGGCTTCGACCCTTCCAGGACT GCTCTGGCAACCCAGTGCCGAACTTTGGGGATATAACGACTGTCACTTTTCCTGTCACACCCAACACGCTGCCCAATTACCAGTCTTCCT CTTCTACCAGTGCCCTGTCCAACGGCTTCTACCACTTTGGCAGCACCAGCTCCAGCCCCCCGATCTCCCCAGCCTCCTCTGACCTGTCAG TCGCTGGGTCCCTGCCGGACACCTTCAATGATGCCTCCCCCTCCTTCGGCCTGCACCCGTCCCCAGTCCACGTGTGCACGGAGGAAAGTC TCATGAGCAGCCTGAATGGGGGCTCTGTTCCTTCTGAGCTGGATGGGCTGGACTCCGAGAAGGACAAGATGCTGGTGGAGAAGCAGAAGG TGATCAATGAACTCACCTGGAAACTCCAGCAAGAGCAGAGGCAGGTGGAGGAGCTGAGGATGCAGCTTCAGAAGCAGAAAAGGAATAACT GTTCAGAGAAGAAGCCGCTGCCTTTCCTGGCTGCCTCCATCAAGCAGGAAGAGGCTGTCTCCAGCTGTCCTTTTGCATCCCAAGTACCTG TGAAAAGACAAAGCAGCAGCTCAGAGTGTCACCCACCGGCTTGTGAAGCTGCTCAACTCCAGCCTCTTGGAAATGCTCATTGTGTGGAGT CCTCAGATCAAACCAATGTACTTTCTTCCACATTTCTCAGCCCCCAGTGTTCCCCTCAGCATTCACCGCTGGGGGCTGTGAAAAGCCCAC AGCACATCAGTTTGCCCCCATCACCCAACAACCCTCACTTTCTGCCCTCATCCTCCGGGGCCCAGGGAGAAGGGCACAGGGTCTCCTCGC CCATCAGCAGCCAGGTGTGCACTGCACAGATGGCTGGTTTACACTCTTCTGATAAGGTGGGGCCAAAGTTTTCAATTCCATCCCCAACTT TTTCTAAGTCAAGTTCAGCAATTTCAGAGGTAACACAGCCTCCATCCTATGAAGATGCCGTAAAGCAGCAAATGACCCGGAGTCAGCAGA TGGATGAACTCCTGGACGTGCTTATTGAAAGCGGAGAAATGCCAGCAGACGCTAGAGAGGATCACTCATGTCTTCAAAAAGTCCCAAAGA TACCCAGATCTTCCCGAAGTCCAACTGCTGTCCTCACCAAGCCCTCGGCTTCCTTTGAACAAGCCTCTTCAGGCAGCCAGATCCCCTTTG ATCCCTATGCCACCGACAGTGATGAGCATCTTGAAGTCTTATTAAATTCCCAGAGCCCCCTAGGAAAGATGAGTGATGTCACCCTTCTAA AAATTGGGAGCGAAGAGCCTCACTTTGATGGGATAATGGATGGATTCTCTGGGAAGGCTGCAGAAGACCTCTTCAATGCACATGAGATCT TGCCAGGCCCCCTCTCTCCAATGCAGACACAGTTTTCACCCTCTTCTGTGGACAGCAATGGGCTGCAGTTAAGCTTCACTGAATCTCCCT GGGAAACCATGGAGTGGCTGGACCTCACTCCGCCAAATTCCACACCAGGCTTTAGCGCCCTCACCACCAGCAGCCCCAGCATCTTCAACA >In-frame_ENST00000571129_ENST00000343344_TCGA-EW-A1OZ-01A_GABARAP_chr17_7144661_-_MYOCD_chr17_12639478_length(amino acids)=747AA_start in transcript=437_stop in transcript=2677 MGTNQDLASGSENDRNDSASQPSHQSDAGKQGLGPPSTPIAVHAAVKSKSLGDSKNRHKKPKDPKPKVKKLKYHQYIPPDQKAEKSPPPM DSAYARLLQQQQLFLQLQILSQQQQQQQHRFSYLGMHQAQLKEPNEQMVRNPNSSSTPLSNTPLSPVKNSFSGQTGVSSFKPGPLPPNLD DLKVSELRQQLRIRGLPVSGTKTALMDRLRPFQDCSGNPVPNFGDITTVTFPVTPNTLPNYQSSSSTSALSNGFYHFGSTSSSPPISPAS SDLSVAGSLPDTFNDASPSFGLHPSPVHVCTEESLMSSLNGGSVPSELDGLDSEKDKMLVEKQKVINELTWKLQQEQRQVEELRMQLQKQ KRNNCSEKKPLPFLAASIKQEEAVSSCPFASQVPVKRQSSSSECHPPACEAAQLQPLGNAHCVESSDQTNVLSSTFLSPQCSPQHSPLGA VKSPQHISLPPSPNNPHFLPSSSGAQGEGHRVSSPISSQVCTAQMAGLHSSDKVGPKFSIPSPTFSKSSSAISEVTQPPSYEDAVKQQMT RSQQMDELLDVLIESGEMPADAREDHSCLQKVPKIPRSSRSPTAVLTKPSASFEQASSGSQIPFDPYATDSDEHLEVLLNSQSPLGKMSD VTLLKIGSEEPHFDGIMDGFSGKAAEDLFNAHEILPGPLSPMQTQFSPSSVDSNGLQLSFTESPWETMEWLDLTPPNSTPGFSALTTSSP -------------------------------------------------------------- >In-frame_ENST00000571253_ENST00000425538_TCGA-EW-A1OZ-01A_GABARAP_chr17_7144661_-_MYOCD_chr17_12639478_length(transcript)=8622nt_BP=771nt GACCGGGTGCCGGTGAGGACAGTAGCCAGGGCCGAGGGCGCGGGACGCTTACGCTGACGCCACAGCCTGGCCTTGGATCGGGACAGGCAG CGCAGGGATCAGGCTGCTGGCTGTGGTGGGGTTGGCAGCGAGCCTGAAACTGCTGTCCTTGGGACCCAGGATGAAAGGAGTGGGGTAGTG GTGGATGTGGGGTTGAGAGGGATGTGGACAGGAGAGAGAAACCTTAGCATTTGAGGCCTTAGAGAGTTTGACAGCCTGAGCTTCAAATGG TCATCCCCCCAGCTAGCTAAGGTTGCGAGATTGAATCACTAGTCGACCCAAACAAGTCACCTCCGTCTGATTAAGATAGTTGTTTATGGT GACGCCCTATTGGGGGATGGATCCTGGATATTTAAATGAGCTCCAGTCAGTGAGGTCAGGATCTCTGGGACTCAGTGCTGCACCGCGTGT ACAAAGACAAAGAGATGAATCTGGGGTAGATTTAGGTGCTAGGAATATTGTTTCTTGAGTTCTTGACAGGTGCAGCTTCGGGGCTGCATT CCTTCTGTCTCCTAATTTTCATCTCTTTATCAGGTGATAGTAGAAAAGGCTCCCAAAGCTCGGATAGGAGACCTGGACAAAAAGAAATAC CTGGTGCCTTCTGATCTCACAGTTGGTCAGTTCTACTTCTTGATCCGGAAGCGAATTCATCTCCGAGCTGAGGATGCCTTGTTTTTCTTT GTCAACAATGTCATTCCACCCACCAGTGCCACAATGGGTCAGCTGTACCAGGTAACCAGGTGAGTTTCTCCAAATCCACGGATGCTTTTG CCTTTGAAGAGGACAGCAGCAGCGATGGGCTTTCTCCGGATCAGACTCGAAGTGAAGACCCCCAAAACTCAGCGGGATCCCCGCCAGACG CTAAAGCCTCAGATACCCCTTCGACAGGTTCTCTGGGGACAAACCAGGATCTTGCTTCTGGCTCAGAAAATGACAGAAATGACTCAGCCT CACAGCCCAGCCACCAGTCAGATGCGGGGAAGCAGGGGCTTGGCCCCCCCAGCACCCCCATAGCCGTGCATGCTGCTGTAAAGTCCAAAT CCTTGGGTGACAGTAAGAACCGCCACAAAAAGCCCAAGGACCCCAAGCCAAAGGTGAAGAAGCTTAAATATCACCAGTACATTCCCCCAG ACCAGAAGGCAGAGAAGTCCCCTCCACCTATGGACTCAGCCTACGCTCGGCTGCTCCAGCAACAGCAGCTGTTCCTGCAGCTCCAAATCC TCAGCCAGCAGCAGCAGCAGCAGCAACACCGATTCAGCTACCTAGGGATGCACCAAGCTCAGCTTAAGGAACCAAATGAACAGATGGTCA GAAATCCAAACTCTTCTTCAACGCCACTGAGCAATACCCCCTTGTCTCCTGTCAAAAACAGTTTTTCTGGACAAACTGGTGTCTCTTCTT TCAAACCAGGCCCACTCCCACCTAACCTGGATGATCTGAAGGTCTCTGAATTAAGACAACAGCTTCGAATTCGGGGCTTGCCTGTGTCAG GCACCAAAACGGCTCTCATGGACCGGCTTCGACCCTTCCAGGACTGCTCTGGCAACCCAGTGCCGAACTTTGGGGATATAACGACTGTCA CTTTTCCTGTCACACCCAACACGCTGCCCAATTACCAGTCTTCCTCTTCTACCAGTGCCCTGTCCAACGGCTTCTACCACTTTGGCAGCA CCAGCTCCAGCCCCCCGATCTCCCCAGCCTCCTCTGACCTGTCAGTCGCTGGGTCCCTGCCGGACACCTTCAATGATGCCTCCCCCTCCT TCGGCCTGCACCCGTCCCCAGTCCACGTGTGCACGGAGGAAAGTCTCATGAGCAGCCTGAATGGGGGCTCTGTTCCTTCTGAGCTGGATG GGCTGGACTCCGAGAAGGACAAGATGCTGGTGGAGAAGCAGAAGGTGATCAATGAACTCACCTGGAAACTCCAGCAAGAGCAGAGGCAGG TGGAGGAGCTGAGGATGCAGCTTCAGAAGCAGAAAAGGAATAACTGTTCAGAGAAGAAGCCGCTGCCTTTCCTGGCTGCCTCCATCAAGC AGGAAGAGGCTGTCTCCAGCTGTCCTTTTGCATCCCAAGTACCTGTGAAAAGACAAAGCAGCAGCTCAGAGTGTCACCCACCGGCTTGTG AAGCTGCTCAACTCCAGCCTCTTGGAAATGCTCATTGTGTGGAGTCCTCAGATCAAACCAATGTACTTTCTTCCACATTTCTCAGCCCCC AGTGTTCCCCTCAGCATTCACCGCTGGGGGCTGTGAAAAGCCCACAGCACATCAGTTTGCCCCCATCACCCAACAACCCTCACTTTCTGC CCTCATCCTCCGGGGCCCAGGGAGAAGGGCACAGGGTCTCCTCGCCCATCAGCAGCCAGGTGTGCACTGCACAGAACTCAGGAGCACACG ATGGCCATCCTCCAAGCTTCTCTCCCCATTCTTCCAGCCTCCACCCGCCCTTCTCTGGAGCCCAAGCAGACAGCAGTCATGGTGCCGGGG GAAACCCTTGTCCCAAAAGCCCATGTGTACAGCAAAAGATGGCTGGTTTACACTCTTCTGATAAGGTGGGGCCAAAGTTTTCAATTCCAT CCCCAACTTTTTCTAAGTCAAGTTCAGCAATTTCAGAGGTAACACAGCCTCCATCCTATGAAGATGCCGTAAAGCAGCAAATGACCCGGA GTCAGCAGATGGATGAACTCCTGGACGTGCTTATTGAAAGCGGAGAAATGCCAGCAGACGCTAGAGAGGATCACTCATGTCTTCAAAAAG TCCCAAAGATACCCAGATCTTCCCGAAGTCCAACTGCTGTCCTCACCAAGCCCTCGGCTTCCTTTGAACAAGCCTCTTCAGGCAGCCAGA TCCCCTTTGATCCCTATGCCACCGACAGTGATGAGCATCTTGAAGTCTTATTAAATTCCCAGAGCCCCCTAGGAAAGATGAGTGATGTCA CCCTTCTAAAAATTGGGAGCGAAGAGCCTCACTTTGATGGGATAATGGATGGATTCTCTGGGAAGGCTGCAGAAGACCTCTTCAATGCAC ATGAGATCTTGCCAGGCCCCCTCTCTCCAATGCAGACACAGTTTTCACCCTCTTCTGTGGACAGCAATGGGCTGCAGTTAAGCTTCACTG AATCTCCCTGGGAAACCATGGAGTGGCTGGACCTCACTCCGCCAAATTCCACACCAGGCTTTAGCGCCCTCACCACCAGCAGCCCCAGCA TCTTCAACATCGATTTCCTGGATGTCACTGATCTCAATTTGAATTCTTCCATGGACCTTCACTTGCAGCAGTGGTAGAATGCCCAATGCA CCAGTGCTATGGAAGACCAATGGAGTTCCATGGGGGAAAGCACACAGCCATACATACTTTACTGTCCAAAAACAGAAGAAGAAGAAGAGA ATTAAAAAGAAGCAATGATTTCTGTGCCAATGAACAAGAACAAAAGTCATTTTTAGAAATACATATACTGTAATATTTACCAACAGTCAG TAACTGTTAATGATTTCAACAATGCATTAAAAGAATGTGCTTTCTCAGATTAAGGATGCCAAAAAAGATATTTCACTGCCTTTTCAAAGA CCAGTATATTTTCTAGCCCATAATTTTTCTCAGGCATTGTTGGGGCATAAGCTCACACTGTAAGCTTTTCTCATGAATTCACTAGACATA ACGTGGAAGGAAAACGTAGTCTTTTGGGAGTACAGGGAAGCCAGCCCCTCAAAGCTTATGGAAGACATACCTGCAATGGAAGCTGTTGCC CAATGTCTCCATTACTATCTTTCAAAAGAGAAGCCAGACCCAGCTTCAGATCAAAAGTTCTTGAGACAGAGGAACAAAACCAATCGATTT CCAGGGAAGCTAATCAACTCTCTTTTCCCTCTACCACAAAACTGCCCTGCTGGAGTGGTTCTGAACCTGTACCCAGGACTCGATGTGGTC ACTAATAACAATTAACCTGAACTGAGTCCACAGAACTCCACTCGGAACTTTCTTCTTTTTTAACTAGTGGCCCAATCATTCCCACCATCT CTGTGCTGATAAGTACGTGTCCTAGATGAGAACCCTGAAGAATGCAGACCTTCTTCCCCCGAAGGAGATGCCACAAGCTCTCCAACACAG CCCCCTTTAGTTCCAAAGACTAGAGATGACCACATTGGTAGAAGTATATCTCGAGGCACAGGAAGGGAGCCCCACCAGGGATAATTCAGA CAGGACTAGAGAATAACATCATTTCACATACCCTGGGATAAACACCCTGGGTTCCTATAGAAGGACTATTACTTATGGGAGTCCAACTTC TCCTTTTGTTTTGTTATTATCAGTTTATCTTTCTCCCACTCCACTTTTCCTTCAAGGTACCAATCCTTTCCTGTTCCTCGTTTGGCCATC TTTCTTTTTCTGCCTCCACATTGGGAGGGGAGGACTTCTCAGTTCTAACAAGCTGCCATACTCCTAAGAAAGCCATTTTTGAAAAATTTA ACAATCCAGGTTCTTCTGGAGAACTCATTCTCCACACGCACAGTTTGCTGCAAAAGGAAGTTGCAAGAATTTCTTGAGGAAGAAACTGGT GACTTGGTCCATCAGTCACGAAGTTCTTTCTATTCTCGTTTAGTTTTCAAGAAATTATTGGTTTGTGTTGCTCTGGGGAAATTGGAAATC ATTACATTGTAAAGACAAATATGGATGATATTTACAAGAGAGAATTTCAGATCTGGGTTTTTGAAAGAAAACAGAATTGCGCATTGAAAA CGATGGAAGGAAAAAGACAATGGTCTAATGTGCATTCCTCATTACCTCTCGTGGCTTTGGCTGGGAGTTGGAAAAAGCTAAAATTTCAGA ACAGTCTCTGTAAGGCTCTCTGTGGCTCCAGTTCACCATTTTATATTGTTGCATGCTGTAGAAAGGAGCTATTGCTGTTGTTTTGTTTTT TTATTTAAATCACTAAGGCACTGTTTTTATCTTTTGTAAAAAAAAAAAAAAAGTTGTTCACTGTGCACTTATAGAAAAAATAATCAAAAA TGTTGGGATTTTAGAAGCTCTCTTTTTGATAAACCAAAGATTTAGAAGTCATTCCATTGTTAACTTGTAAAAATGTGTGAACACAGAGAG TTTTTGGTGATTGCTACTCTGAAAGCTGCCAGATCTTATTCTGGGGGTGGGATGTGGAGGAATACACATACACACACAAACATACATGTA TGTATAATAGATATATACATATGTGTATATTATATCTGTGTGTGCATGTATCTCCAAAAGCGGCGTTACAGAGTTCTACACCAAAAGCCT TTAACCCTTAATCTGCTGTGAATGATACCTGGCCTTTCTCACTATGAATTTCTGATTAACCAACCAGACTACACGTTGCCTCTCTGTGTA TGACTAACGGCTCCAACCCGATGACTCACAGCTACTTGCTTATCGTGAACAAGCTCATCTTGGCAATGAATATGGATGTGAAAAGACAGA ACAGCTTCACCATTAGTAGCTGGAAATGGTATCACAGTCTCTTATAGAGGAATATGAAAGGAACAAGAAAATCATTTTACATTCCTTTTA TCTGTATTGTGCTTTAAAAGATCCACATGGTAAATTTTTTATTTTGCTTTTATGTCAGTCATCAGAACCAAAAAAATCCAGAAGAAAAAA TTGCCAGTGTTTCCTTTGAAGATGAAGCTACTGGGGAAGAAAACCTTATTAATACACTCCACACATTTGTTCATTCCTCAGCTGTTGGTG TTTTCTTGGGGTCTTGACAAAGCTTGCTGGTCAGTGCACTTTTCAGGTGTCACGTTTTGCTGTTTGTATGTTTTTTCTTCCCCTTACTTC CTTTGGAAAACAAACTCACACAGTGCCCCTACTCTGAGACCTGGGACTGAGTGTTAATTATTTTTTCCTTGGGTATTTCTATCTGAGAGA CTAGACCTAGTTAGGAGGCCTCTGTACTTCTCCAGATTGTACCTTTTTATGGGGATCTTTGAGGCTATGACCCAGGACTGATAGATATGC CTTACGGAAGACAAAAGATAAAATGGTTCCTATATCCTAATGCAAACCAACACAGTTAAAAGAGCAGATCTCTGGATAACTGCTCTCAAC CTGCTTCTACAGTCTCCACAAACCGCATTCACCCTCTCTCTTCATAGCTCAGACATGAAATTTGAGGGAGAAAACTGGAGATAATTGGGA GAAAATTGATGAAGTTGGCTGCTTCCAGTAGATCAGATAATCCATGAATTTGTCTCCCATTGAGAATTTTATTTTAAATTCTTTTAAACT CTTCGTTGTGTCTTTTGTGATGACAAATCAGGCATGACTAAAAGATGTACAGAGACTTACGAAGATGGTCACATTCAAGTTCCCTAATGC TCTTAGAACCTGAAGATGACCATGTGTAGTTTTCTTAAGACCTCTGAACCCCCATGGTGATGAAGACTTGAAGACATTTGCAGCTATCTG CTGCAGTCTGGTAGATTCATACTTATCTAAAGAAGTCAAAAAATTTATTCGTGCAAGTGCTTGCAGGAAGCCAGTGCTTATTAGTAGTGA CCCTGCTTCTATCAACGTTATTGAGACAACACATATTCTATTCTAAGGGAGAAAGAGGGAGGAAGAGAGGGAGGGAGGGAGGAAGAAGAG GGAGGGAGCGAGGAAGGAAGATAGGAGATGGGTAGGGGGGTAAAGAGAAAAGGAGGGAGAAGGGAAGGAAGGAAAGAAGAGAGGAAAGAA AGGAGGGAAGGAAAAAAGGGCCAAACTTTCTGATCTATGAACTTCTCAGTTCAGCTGTCACATTATGAGAAGTAAATCAGAATTTTTTTA AGGAGAAGTCATTCTTAGCACTACAATAATTGTACCAGTAATTGAGGAAACCAAGACAATCTTCACCTGAATAATAGAGGGTCTGAGAAC TGTCAGCCTTTTGCCATTCAAAAACATTTATGTCCAACCTGAAAAAAAAGCATCAATAAAACCTATCCCAAGCATTCAAAATAGTCCTTT CCAAATGTTATTTATTTTAAAGTCAATCAGCTCTTTTAGAAACAGATTCTGGTCTGGCTGAAAACTCCCACAACAAATTTACTCATCCAG TGGCTAATATTTAATGCCCACCATGGGCAGAGCACACAAATCTTCAGATAAACAATACTGAATTGATTCAGCACAGATTGTTCAGATTTG AATGACCAGGGAGTTGTATTTGCACATGCAAGAACACTAAGAATCTCCCAGTCCTCAAACTAGAAACCTTTCAGCTACGATGAAAAAAAA AAAGGGGTCTTCATTTTTCCAAGAGGGGGTGGAGGTGGGGATCACTTTTTAGCTAAAAGCTATCTCTCACTTCAAAATTCTTGTCTTTTT CTTTGTGGACAAACACCAGTAGTCTATCACTTGGAGATCTTTTAATATCTCCCATCATTTAAAACATCCACGAGAGTTTGAAGATTTGTG TTGATTGCCAGATACAGAAGCCCCTTGAAAATAAGGAAAGGGTGGAGGAAGCATTTTTGTGTCCTATCCCTACTTATCGTAGCAGCTCTA TAGACAAAAGGGACACTTACTGGTGAGCCTCTGGCCCTTAAAAGAAAATCATCTAAGAATATGAAGGCAATTTGATTTCCCCCCACAGCC CTCAGCTGCCTTCCTCACAGAAGGAAGTTCCCAAAATTGCTGGTACACAGTTTGCAATCAAATATCAGATATGAGAAAACCTGTAGTGAA GAGTCTGGGTTCTTGGTTTTCTCATAAATCCAATATAAATTTGTAGGTTGGTTCAGGGTCAAAATTGCCAGTGCTTTATTAGACAGATGA TACTGATAGACACACAGAGCCCAGGTCCTGGAACAAGACAATCCTGTAGTGCCAAGATCTGGTCAGTTGCGTTAAGGAGCTGGGTTTGAT TCTAGAGTCCAGGTTTATAGAGAAACCCTGGCTAGATTGAGCCTACCCATGGGGAGACGATTTCAAGACAGGATGAGATCTGGGAAGAAT TTTGTTGTCATCTGCCAGGGAAATTATCACAGGACTCATTGAATGCAATAACATGTGAGTAAGTTCCCTTTTGATTCTGGGAATCAGCGA TTTTCCCTGTGGATTAAGACAAACCAACGCCAGAAGGTCTCCTGTGCTTATTTTAACCATCTGCTCCCATCGTGAACCCTGGAGCATGCA TTTCCTAGAAGTGGTTTCATAGCTCCTGTGTGTTCATGGAAAAGGGGAGTATAATGATGGGGATGCTGGAAGCTTTTTTAATGTTTTCCA AAGGAAAGGAACCCACACTGCTCCCCAGAGTTCCTTTCCAATGGCCCTGCAGTAAGAACGGAGGACAATGTATTGCTGGGTGCTTAAAAT CCTCCCTCAGTGAAGCACAAAGAGACACTTTGTAAAGAAAAAAAGAGCAAGCATAGGTTCTCTGTGGGACCTTGTGGAGTGGTGTTTTCA CGTTGGTCTCTTTGGCTCAATTGAGCATAATCAGAAAGAAATGTGGGTTATTGGGAAGAGACAAAAAGCAGTGGCTAAAATACCAAAGTT >In-frame_ENST00000571253_ENST00000425538_TCGA-EW-A1OZ-01A_GABARAP_chr17_7144661_-_MYOCD_chr17_12639478_length(amino acids)=794AA_start in transcript=932_stop in transcript=3316 MGTNQDLASGSENDRNDSASQPSHQSDAGKQGLGPPSTPIAVHAAVKSKSLGDSKNRHKKPKDPKPKVKKLKYHQYIPPDQKAEKSPPPM DSAYARLLQQQQLFLQLQILSQQQQQQQHRFSYLGMHQAQLKEPNEQMVRNPNSSSTPLSNTPLSPVKNSFSGQTGVSSFKPGPLPPNLD DLKVSELRQQLRIRGLPVSGTKTALMDRLRPFQDCSGNPVPNFGDITTVTFPVTPNTLPNYQSSSSTSALSNGFYHFGSTSSSPPISPAS SDLSVAGSLPDTFNDASPSFGLHPSPVHVCTEESLMSSLNGGSVPSELDGLDSEKDKMLVEKQKVINELTWKLQQEQRQVEELRMQLQKQ KRNNCSEKKPLPFLAASIKQEEAVSSCPFASQVPVKRQSSSSECHPPACEAAQLQPLGNAHCVESSDQTNVLSSTFLSPQCSPQHSPLGA VKSPQHISLPPSPNNPHFLPSSSGAQGEGHRVSSPISSQVCTAQNSGAHDGHPPSFSPHSSSLHPPFSGAQADSSHGAGGNPCPKSPCVQ QKMAGLHSSDKVGPKFSIPSPTFSKSSSAISEVTQPPSYEDAVKQQMTRSQQMDELLDVLIESGEMPADAREDHSCLQKVPKIPRSSRSP TAVLTKPSASFEQASSGSQIPFDPYATDSDEHLEVLLNSQSPLGKMSDVTLLKIGSEEPHFDGIMDGFSGKAAEDLFNAHEILPGPLSPM -------------------------------------------------------------- >In-frame_ENST00000571253_ENST00000343344_TCGA-EW-A1OZ-01A_GABARAP_chr17_7144661_-_MYOCD_chr17_12639478_length(transcript)=3173nt_BP=771nt GACCGGGTGCCGGTGAGGACAGTAGCCAGGGCCGAGGGCGCGGGACGCTTACGCTGACGCCACAGCCTGGCCTTGGATCGGGACAGGCAG CGCAGGGATCAGGCTGCTGGCTGTGGTGGGGTTGGCAGCGAGCCTGAAACTGCTGTCCTTGGGACCCAGGATGAAAGGAGTGGGGTAGTG GTGGATGTGGGGTTGAGAGGGATGTGGACAGGAGAGAGAAACCTTAGCATTTGAGGCCTTAGAGAGTTTGACAGCCTGAGCTTCAAATGG TCATCCCCCCAGCTAGCTAAGGTTGCGAGATTGAATCACTAGTCGACCCAAACAAGTCACCTCCGTCTGATTAAGATAGTTGTTTATGGT GACGCCCTATTGGGGGATGGATCCTGGATATTTAAATGAGCTCCAGTCAGTGAGGTCAGGATCTCTGGGACTCAGTGCTGCACCGCGTGT ACAAAGACAAAGAGATGAATCTGGGGTAGATTTAGGTGCTAGGAATATTGTTTCTTGAGTTCTTGACAGGTGCAGCTTCGGGGCTGCATT CCTTCTGTCTCCTAATTTTCATCTCTTTATCAGGTGATAGTAGAAAAGGCTCCCAAAGCTCGGATAGGAGACCTGGACAAAAAGAAATAC CTGGTGCCTTCTGATCTCACAGTTGGTCAGTTCTACTTCTTGATCCGGAAGCGAATTCATCTCCGAGCTGAGGATGCCTTGTTTTTCTTT GTCAACAATGTCATTCCACCCACCAGTGCCACAATGGGTCAGCTGTACCAGGTAACCAGGTGAGTTTCTCCAAATCCACGGATGCTTTTG CCTTTGAAGAGGACAGCAGCAGCGATGGGCTTTCTCCGGATCAGACTCGAAGTGAAGACCCCCAAAACTCAGCGGGATCCCCGCCAGACG CTAAAGCCTCAGATACCCCTTCGACAGGTTCTCTGGGGACAAACCAGGATCTTGCTTCTGGCTCAGAAAATGACAGAAATGACTCAGCCT CACAGCCCAGCCACCAGTCAGATGCGGGGAAGCAGGGGCTTGGCCCCCCCAGCACCCCCATAGCCGTGCATGCTGCTGTAAAGTCCAAAT CCTTGGGTGACAGTAAGAACCGCCACAAAAAGCCCAAGGACCCCAAGCCAAAGGTGAAGAAGCTTAAATATCACCAGTACATTCCCCCAG ACCAGAAGGCAGAGAAGTCCCCTCCACCTATGGACTCAGCCTACGCTCGGCTGCTCCAGCAACAGCAGCTGTTCCTGCAGCTCCAAATCC TCAGCCAGCAGCAGCAGCAGCAGCAACACCGATTCAGCTACCTAGGGATGCACCAAGCTCAGCTTAAGGAACCAAATGAACAGATGGTCA GAAATCCAAACTCTTCTTCAACGCCACTGAGCAATACCCCCTTGTCTCCTGTCAAAAACAGTTTTTCTGGACAAACTGGTGTCTCTTCTT TCAAACCAGGCCCACTCCCACCTAACCTGGATGATCTGAAGGTCTCTGAATTAAGACAACAGCTTCGAATTCGGGGCTTGCCTGTGTCAG GCACCAAAACGGCTCTCATGGACCGGCTTCGACCCTTCCAGGACTGCTCTGGCAACCCAGTGCCGAACTTTGGGGATATAACGACTGTCA CTTTTCCTGTCACACCCAACACGCTGCCCAATTACCAGTCTTCCTCTTCTACCAGTGCCCTGTCCAACGGCTTCTACCACTTTGGCAGCA CCAGCTCCAGCCCCCCGATCTCCCCAGCCTCCTCTGACCTGTCAGTCGCTGGGTCCCTGCCGGACACCTTCAATGATGCCTCCCCCTCCT TCGGCCTGCACCCGTCCCCAGTCCACGTGTGCACGGAGGAAAGTCTCATGAGCAGCCTGAATGGGGGCTCTGTTCCTTCTGAGCTGGATG GGCTGGACTCCGAGAAGGACAAGATGCTGGTGGAGAAGCAGAAGGTGATCAATGAACTCACCTGGAAACTCCAGCAAGAGCAGAGGCAGG TGGAGGAGCTGAGGATGCAGCTTCAGAAGCAGAAAAGGAATAACTGTTCAGAGAAGAAGCCGCTGCCTTTCCTGGCTGCCTCCATCAAGC AGGAAGAGGCTGTCTCCAGCTGTCCTTTTGCATCCCAAGTACCTGTGAAAAGACAAAGCAGCAGCTCAGAGTGTCACCCACCGGCTTGTG AAGCTGCTCAACTCCAGCCTCTTGGAAATGCTCATTGTGTGGAGTCCTCAGATCAAACCAATGTACTTTCTTCCACATTTCTCAGCCCCC AGTGTTCCCCTCAGCATTCACCGCTGGGGGCTGTGAAAAGCCCACAGCACATCAGTTTGCCCCCATCACCCAACAACCCTCACTTTCTGC CCTCATCCTCCGGGGCCCAGGGAGAAGGGCACAGGGTCTCCTCGCCCATCAGCAGCCAGGTGTGCACTGCACAGATGGCTGGTTTACACT CTTCTGATAAGGTGGGGCCAAAGTTTTCAATTCCATCCCCAACTTTTTCTAAGTCAAGTTCAGCAATTTCAGAGGTAACACAGCCTCCAT CCTATGAAGATGCCGTAAAGCAGCAAATGACCCGGAGTCAGCAGATGGATGAACTCCTGGACGTGCTTATTGAAAGCGGAGAAATGCCAG CAGACGCTAGAGAGGATCACTCATGTCTTCAAAAAGTCCCAAAGATACCCAGATCTTCCCGAAGTCCAACTGCTGTCCTCACCAAGCCCT CGGCTTCCTTTGAACAAGCCTCTTCAGGCAGCCAGATCCCCTTTGATCCCTATGCCACCGACAGTGATGAGCATCTTGAAGTCTTATTAA ATTCCCAGAGCCCCCTAGGAAAGATGAGTGATGTCACCCTTCTAAAAATTGGGAGCGAAGAGCCTCACTTTGATGGGATAATGGATGGAT TCTCTGGGAAGGCTGCAGAAGACCTCTTCAATGCACATGAGATCTTGCCAGGCCCCCTCTCTCCAATGCAGACACAGTTTTCACCCTCTT CTGTGGACAGCAATGGGCTGCAGTTAAGCTTCACTGAATCTCCCTGGGAAACCATGGAGTGGCTGGACCTCACTCCGCCAAATTCCACAC CAGGCTTTAGCGCCCTCACCACCAGCAGCCCCAGCATCTTCAACATCGATTTCCTGGATGTCACTGATCTCAATTTGAATTCTTCCATGG >In-frame_ENST00000571253_ENST00000343344_TCGA-EW-A1OZ-01A_GABARAP_chr17_7144661_-_MYOCD_chr17_12639478_length(amino acids)=747AA_start in transcript=932_stop in transcript=3172 MGTNQDLASGSENDRNDSASQPSHQSDAGKQGLGPPSTPIAVHAAVKSKSLGDSKNRHKKPKDPKPKVKKLKYHQYIPPDQKAEKSPPPM DSAYARLLQQQQLFLQLQILSQQQQQQQHRFSYLGMHQAQLKEPNEQMVRNPNSSSTPLSNTPLSPVKNSFSGQTGVSSFKPGPLPPNLD DLKVSELRQQLRIRGLPVSGTKTALMDRLRPFQDCSGNPVPNFGDITTVTFPVTPNTLPNYQSSSSTSALSNGFYHFGSTSSSPPISPAS SDLSVAGSLPDTFNDASPSFGLHPSPVHVCTEESLMSSLNGGSVPSELDGLDSEKDKMLVEKQKVINELTWKLQQEQRQVEELRMQLQKQ KRNNCSEKKPLPFLAASIKQEEAVSSCPFASQVPVKRQSSSSECHPPACEAAQLQPLGNAHCVESSDQTNVLSSTFLSPQCSPQHSPLGA VKSPQHISLPPSPNNPHFLPSSSGAQGEGHRVSSPISSQVCTAQMAGLHSSDKVGPKFSIPSPTFSKSSSAISEVTQPPSYEDAVKQQMT RSQQMDELLDVLIESGEMPADAREDHSCLQKVPKIPRSSRSPTAVLTKPSASFEQASSGSQIPFDPYATDSDEHLEVLLNSQSPLGKMSD VTLLKIGSEEPHFDGIMDGFSGKAAEDLFNAHEILPGPLSPMQTQFSPSSVDSNGLQLSFTESPWETMEWLDLTPPNSTPGFSALTTSSP -------------------------------------------------------------- |
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Fusion Gene PPI Analysis for GABARAP-MYOCD |
Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in |
Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
Hgene | Hgene's interactors | Tgene | Tgene's interactors |
- Retained PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
Hgene | GABARAP | chr17:7144661 | chr17:12639478 | ENST00000302386 | - | 3 | 4 | 1_22 | 96.0 | 118.0 | beta-tubulin |
Hgene | GABARAP | chr17:7144661 | chr17:12639478 | ENST00000302386 | - | 3 | 4 | 36_68 | 96.0 | 118.0 | GABRG2 |
- Lost PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
Hgene | GABARAP | chr17:7144661 | chr17:12639478 | ENST00000302386 | - | 3 | 4 | 36_117 | 96.0 | 118.0 | GPHN |
- Retained PPIs, but lost function due to frame-shift fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Related Drugs for GABARAP-MYOCD |
Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.8 2021-05-08) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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Related Diseases for GABARAP-MYOCD |
Diseases associated with fusion partners. (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Hgene | GABARAP | C0036341 | Schizophrenia | 1 | PSYGENET |
Tgene | MYOCD | C0004238 | Atrial Fibrillation | 2 | CTD_human |
Tgene | MYOCD | C0235480 | Paroxysmal atrial fibrillation | 2 | CTD_human |
Tgene | MYOCD | C2585653 | Persistent atrial fibrillation | 2 | CTD_human |
Tgene | MYOCD | C3468561 | familial atrial fibrillation | 2 | CTD_human |
Tgene | MYOCD | C0018800 | Cardiomegaly | 1 | CTD_human |
Tgene | MYOCD | C0152021 | Congenital heart disease | 1 | GENOMICS_ENGLAND |
Tgene | MYOCD | C0549253 | Dilatation of the bladder | 1 | GENOMICS_ENGLAND |
Tgene | MYOCD | C0878544 | Cardiomyopathies | 1 | GENOMICS_ENGLAND |
Tgene | MYOCD | C1383860 | Cardiac Hypertrophy | 1 | CTD_human |