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Center for Computational Systems Medicine
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Fusion Gene Summary

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Fusion Gene ORF analysis

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Fusion Genomic Features

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Fusion Protein Features

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Fusion Gene Sequence

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Fusion Gene PPI analysis

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Related Drugs

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Related Diseases

Fusion gene:GAS6-TMEM255B (FusionGDB2 ID:32437)

Fusion Gene Summary for GAS6-TMEM255B

check button Fusion gene summary
Fusion gene informationFusion gene name: GAS6-TMEM255B
Fusion gene ID: 32437
HgeneTgene
Gene symbol

GAS6

TMEM255B

Gene ID

2621

348013

Gene namegrowth arrest specific 6transmembrane protein 255B
SynonymsAXLLG|AXSFFAM70B
Cytomap

13q34

13q34

Type of geneprotein-codingprotein-coding
Descriptiongrowth arrest-specific protein 6AXL receptor tyrosine kinase ligandAXL stimulatory factortransmembrane protein 255Bfamily with sequence similarity 70, member Bprotein FAM70B
Modification date2020031320200313
UniProtAcc

Q14393

.
Ensembl transtripts involved in fusion geneENST00000357389, ENST00000327773, 
ENST00000476291, ENST00000418959, 
ENST00000450766, ENST00000355761, 
ENST00000375353, ENST00000467169, 
Fusion gene scores* DoF score21 X 12 X 12=30244 X 5 X 4=80
# samples 295
** MAII scorelog2(29/3024*10)=-3.38233333420614
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
log2(5/80*10)=-0.678071905112638
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
Context

PubMed: GAS6 [Title/Abstract] AND TMEM255B [Title/Abstract] AND fusion [Title/Abstract]

Most frequent breakpointGAS6(114538486)-TMEM255B(114514709), # samples:1
TMEM255B(114514708)-GAS6(114536551), # samples:1
TMEM255B(114514708)-GAS6(114537736), # samples:1
Anticipated loss of major functional domain due to fusion event.
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
HgeneGAS6

GO:0001934

positive regulation of protein phosphorylation

7854420|16723520|20103767

HgeneGAS6

GO:0006468

protein phosphorylation

16359517

HgeneGAS6

GO:0006909

phagocytosis

21501828

HgeneGAS6

GO:0007165

signal transduction

7854420|18680538

HgeneGAS6

GO:0010628

positive regulation of gene expression

19657094

HgeneGAS6

GO:0010804

negative regulation of tumor necrosis factor-mediated signaling pathway

19657094

HgeneGAS6

GO:0018105

peptidyl-serine phosphorylation

18680538|20103767

HgeneGAS6

GO:0019064

fusion of virus membrane with host plasma membrane

21501828

HgeneGAS6

GO:0019079

viral genome replication

21501828

HgeneGAS6

GO:0032689

negative regulation of interferon-gamma production

18840707

HgeneGAS6

GO:0032715

negative regulation of interleukin-6 production

19657094

HgeneGAS6

GO:0032720

negative regulation of tumor necrosis factor production

19657094|20103767

HgeneGAS6

GO:0032825

positive regulation of natural killer cell differentiation

18840707

HgeneGAS6

GO:0033138

positive regulation of peptidyl-serine phosphorylation

16723520

HgeneGAS6

GO:0035457

cellular response to interferon-alpha

19657094

HgeneGAS6

GO:0035690

cellular response to drug

16359517

HgeneGAS6

GO:0035754

B cell chemotaxis

19922767

HgeneGAS6

GO:0043066

negative regulation of apoptotic process

19922767

HgeneGAS6

GO:0043154

negative regulation of cysteine-type endopeptidase activity involved in apoptotic process

16723520

HgeneGAS6

GO:0043277

apoptotic cell clearance

21501828

HgeneGAS6

GO:0043433

negative regulation of DNA-binding transcription factor activity

18680538

HgeneGAS6

GO:0043491

protein kinase B signaling

16723520|20103767

HgeneGAS6

GO:0045860

positive regulation of protein kinase activity

7854420

HgeneGAS6

GO:0045892

negative regulation of transcription, DNA-templated

18680538

HgeneGAS6

GO:0046718

viral entry into host cell

21501828

HgeneGAS6

GO:0046813

receptor-mediated virion attachment to host cell

21501828

HgeneGAS6

GO:0046827

positive regulation of protein export from nucleus

18680538

HgeneGAS6

GO:0048146

positive regulation of fibroblast proliferation

7854420|15184064

HgeneGAS6

GO:0050711

negative regulation of interleukin-1 secretion

20103767

HgeneGAS6

GO:0050766

positive regulation of phagocytosis

18395422

HgeneGAS6

GO:0051897

positive regulation of protein kinase B signaling

16359517|16723520|18680538

HgeneGAS6

GO:0061098

positive regulation of protein tyrosine kinase activity

20103767

HgeneGAS6

GO:0070168

negative regulation of biomineral tissue development

20048160

HgeneGAS6

GO:0070374

positive regulation of ERK1 and ERK2 cascade

15184064

HgeneGAS6

GO:0070588

calcium ion transmembrane transport

18395422

HgeneGAS6

GO:0071307

cellular response to vitamin K

16359517

HgeneGAS6

GO:0072659

protein localization to plasma membrane

16359517

HgeneGAS6

GO:0097241

hematopoietic stem cell migration to bone marrow

19922767

HgeneGAS6

GO:1900142

negative regulation of oligodendrocyte apoptotic process

16723520

HgeneGAS6

GO:1900165

negative regulation of interleukin-6 secretion

20103767

HgeneGAS6

GO:2000270

negative regulation of fibroblast apoptotic process

16359517

HgeneGAS6

GO:2000352

negative regulation of endothelial cell apoptotic process

16359517|18680538|18760998

HgeneGAS6

GO:2000510

positive regulation of dendritic cell chemotaxis

19657094

HgeneGAS6

GO:2000669

negative regulation of dendritic cell apoptotic process

19657094


check buttonFusion gene breakpoints across GAS6 (5'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.

check buttonFusion gene breakpoints across TMEM255B (3'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.

check button Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0)
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
SourceDiseaseSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
ChimerDB4COADTCGA-D5-6532-01AGAS6chr13

114538486

-TMEM255Bchr13

114514709

+


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Fusion Gene ORF analysis for GAS6-TMEM255B

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
In-frameENST00000357389ENST00000375353GAS6chr13

114538486

-TMEM255Bchr13

114514709

+
5CDS-3UTRENST00000357389ENST00000467169GAS6chr13

114538486

-TMEM255Bchr13

114514709

+
In-frameENST00000327773ENST00000375353GAS6chr13

114538486

-TMEM255Bchr13

114514709

+
5CDS-3UTRENST00000327773ENST00000467169GAS6chr13

114538486

-TMEM255Bchr13

114514709

+
intron-3CDSENST00000476291ENST00000375353GAS6chr13

114538486

-TMEM255Bchr13

114514709

+
intron-3UTRENST00000476291ENST00000467169GAS6chr13

114538486

-TMEM255Bchr13

114514709

+
intron-3CDSENST00000418959ENST00000375353GAS6chr13

114538486

-TMEM255Bchr13

114514709

+
intron-3UTRENST00000418959ENST00000467169GAS6chr13

114538486

-TMEM255Bchr13

114514709

+
5UTR-3CDSENST00000450766ENST00000375353GAS6chr13

114538486

-TMEM255Bchr13

114514709

+
5UTR-3UTRENST00000450766ENST00000467169GAS6chr13

114538486

-TMEM255Bchr13

114514709

+
In-frameENST00000355761ENST00000375353GAS6chr13

114538486

-TMEM255Bchr13

114514709

+
5CDS-3UTRENST00000355761ENST00000467169GAS6chr13

114538486

-TMEM255Bchr13

114514709

+

check buttonORFfinder result based on the fusion transcript sequence of in-frame fusion genes.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandSeq length
(transcript)
BP loci
(transcript)
Predicted start
(transcript)
Predicted stop
(transcript)
Seq length
(amino acids)

check buttonDeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandNo-coding scoreCoding score

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Fusion Genomic Features for GAS6-TMEM255B


check buttonFusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints.
HgeneHchrHbpHstrandTgeneTchrTbpTstrand1-pp (fusion gene breakpoint)
GAS6chr13114538485-TMEM255Bchr13114514708+0.0135238310.9864762
GAS6chr13114538485-TMEM255Bchr13114514708+0.0135238310.9864762

check buttonDistribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page.

check buttonDistribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page.

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Fusion Protein Features for GAS6-TMEM255B


check button Go to

FGviewer for the breakpoints of chr13:114538486-chr13:114514709

.
- FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels.
FGviewer

check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
GAS6

Q14393

.
FUNCTION: Ligand for tyrosine-protein kinase receptors AXL, TYRO3 and MER whose signaling is implicated in cell growth and survival, cell adhesion and cell migration. GAS6/AXL signaling plays a role in various processes such as endothelial cell survival during acidification by preventing apoptosis, optimal cytokine signaling during human natural killer cell development, hepatic regeneration, gonadotropin-releasing hormone neuron survival and migration, platelet activation, or regulation of thrombotic responses. {ECO:0000269|PubMed:12364394, ECO:0000269|PubMed:18840707}.; FUNCTION: (Microbial infection) Can bridge virus envelope phosphatidylserine to the TAM receptor tyrosine kinase Axl to mediate viral entry by apoptotic mimicry (PubMed:21501828). Plays a role in Dengue cell entry by apoptotic mimicry (PubMed:23084921). Plays a role in Vaccinia virus cell entry by apoptotic mimicry (PubMed:21501828). Plays a role in ebolavirus and marburgvirus cell entry by apoptotic mimicry (PubMed:17005688). {ECO:0000269|PubMed:17005688, ECO:0000269|PubMed:21501828, ECO:0000269|PubMed:23084921}.FUNCTION: Might normally function as a transcriptional repressor. EWS-fusion-proteins (EFPS) may play a role in the tumorigenic process. They may disturb gene expression by mimicking, or interfering with the normal function of CTD-POLII within the transcription initiation complex. They may also contribute to an aberrant activation of the fusion protein target genes.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page


* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
HgeneGAS6chr13:114538486chr13:114514709ENST00000327773-715116_154237.33333333333334679.0DomainEGF-like 1%3B calcium-binding
HgeneGAS6chr13:114538486chr13:114514709ENST00000327773-715156_196237.33333333333334679.0DomainEGF-like 2%3B calcium-binding
HgeneGAS6chr13:114538486chr13:114514709ENST00000327773-715197_237237.33333333333334679.0DomainEGF-like 3%3B calcium-binding
HgeneGAS6chr13:114538486chr13:114514709ENST00000327773-71553_94237.33333333333334679.0DomainGla
HgeneGAS6chr13:114538486chr13:114514709ENST00000355761-513116_154183.33333333333334625.0DomainEGF-like 1%3B calcium-binding
HgeneGAS6chr13:114538486chr13:114514709ENST00000355761-51353_94183.33333333333334625.0DomainGla

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
HgeneGAS6chr13:114538486chr13:114514709ENST00000327773-715238_278237.33333333333334679.0DomainEGF-like 4%3B calcium-binding
HgeneGAS6chr13:114538486chr13:114514709ENST00000327773-715298_470237.33333333333334679.0DomainLaminin G-like 1
HgeneGAS6chr13:114538486chr13:114514709ENST00000327773-715477_670237.33333333333334679.0DomainLaminin G-like 2
HgeneGAS6chr13:114538486chr13:114514709ENST00000355761-513156_196183.33333333333334625.0DomainEGF-like 2%3B calcium-binding
HgeneGAS6chr13:114538486chr13:114514709ENST00000355761-513197_237183.33333333333334625.0DomainEGF-like 3%3B calcium-binding
HgeneGAS6chr13:114538486chr13:114514709ENST00000355761-513238_278183.33333333333334625.0DomainEGF-like 4%3B calcium-binding
HgeneGAS6chr13:114538486chr13:114514709ENST00000355761-513298_470183.33333333333334625.0DomainLaminin G-like 1
HgeneGAS6chr13:114538486chr13:114514709ENST00000355761-513477_670183.33333333333334625.0DomainLaminin G-like 2
HgeneGAS6chr13:114538486chr13:114514709ENST00000418959-17116_1540380.0DomainEGF-like 1%3B calcium-binding
HgeneGAS6chr13:114538486chr13:114514709ENST00000418959-17156_1960380.0DomainEGF-like 2%3B calcium-binding
HgeneGAS6chr13:114538486chr13:114514709ENST00000418959-17197_2370380.0DomainEGF-like 3%3B calcium-binding
HgeneGAS6chr13:114538486chr13:114514709ENST00000418959-17238_2780380.0DomainEGF-like 4%3B calcium-binding
HgeneGAS6chr13:114538486chr13:114514709ENST00000418959-17298_4700380.0DomainLaminin G-like 1
HgeneGAS6chr13:114538486chr13:114514709ENST00000418959-17477_6700380.0DomainLaminin G-like 2
HgeneGAS6chr13:114538486chr13:114514709ENST00000418959-1753_940380.0DomainGla
HgeneGAS6chr13:114538486chr13:114514709ENST00000450766-19116_1540406.0DomainEGF-like 1%3B calcium-binding
HgeneGAS6chr13:114538486chr13:114514709ENST00000450766-19156_1960406.0DomainEGF-like 2%3B calcium-binding
HgeneGAS6chr13:114538486chr13:114514709ENST00000450766-19197_2370406.0DomainEGF-like 3%3B calcium-binding
HgeneGAS6chr13:114538486chr13:114514709ENST00000450766-19238_2780406.0DomainEGF-like 4%3B calcium-binding
HgeneGAS6chr13:114538486chr13:114514709ENST00000450766-19298_4700406.0DomainLaminin G-like 1
HgeneGAS6chr13:114538486chr13:114514709ENST00000450766-19477_6700406.0DomainLaminin G-like 2
HgeneGAS6chr13:114538486chr13:114514709ENST00000450766-1953_940406.0DomainGla
TgeneTMEM255Bchr13:114538486chr13:114514709ENST0000037535379257_326271.0327.0Compositional biasNote=Pro-rich
TgeneTMEM255Bchr13:114538486chr13:114514709ENST0000037535379200_220271.0327.0TransmembraneHelical
TgeneTMEM255Bchr13:114538486chr13:114514709ENST000003753537926_46271.0327.0TransmembraneHelical
TgeneTMEM255Bchr13:114538486chr13:114514709ENST000003753537955_75271.0327.0TransmembraneHelical
TgeneTMEM255Bchr13:114538486chr13:114514709ENST000003753537985_105271.0327.0TransmembraneHelical


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Fusion Gene Sequence for GAS6-TMEM255B


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones.

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Fusion Gene PPI Analysis for GAS6-TMEM255B


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page.


check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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Related Drugs for GAS6-TMEM255B


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.8 2021-05-08)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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Related Diseases for GAS6-TMEM255B


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource
HgeneGAS6C0040053Thrombosis4CTD_human
HgeneGAS6C0087086Thrombus4CTD_human
HgeneGAS6C0010606Adenoid Cystic Carcinoma1CTD_human
HgeneGAS6C0011881Diabetic Nephropathy1CTD_human
HgeneGAS6C0017667Nodular glomerulosclerosis1CTD_human
HgeneGAS6C0018800Cardiomegaly1CTD_human
HgeneGAS6C0022660Kidney Failure, Acute1CTD_human
HgeneGAS6C0036095Salivary Gland Neoplasms1CTD_human
HgeneGAS6C0040038Thromboembolism1CTD_human
HgeneGAS6C0220636Malignant neoplasm of salivary gland1CTD_human
HgeneGAS6C1383860Cardiac Hypertrophy1CTD_human
HgeneGAS6C1565662Acute Kidney Insufficiency1CTD_human
HgeneGAS6C2609414Acute kidney injury1CTD_human