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 | Fusion Gene Summary |
| Fusion Gene ORF analysis |
| Fusion Genomic Features |
| Fusion Protein Features |
| Fusion Gene Sequence |
| Fusion Gene PPI analysis |
| Related Drugs |
| Related Diseases |
Fusion gene:GHRL-SEC13 (FusionGDB2 ID:32962) |
Fusion Gene Summary for GHRL-SEC13 |
 Fusion gene summary |
| Fusion gene information | Fusion gene name: GHRL-SEC13 | Fusion gene ID: 32962 | Hgene | Tgene | Gene symbol | GHRL | SEC13 | Gene ID | 51738 | 6396 |
| Gene name | ghrelin and obestatin prepropeptide | SEC13 homolog, nuclear pore and COPII coat complex component | |
| Synonyms | MTLRP | D3S1231E|SEC13L1|SEC13R|npp-20 | |
| Cytomap | 3p25.3 | 3p25.3 | |
| Type of gene | protein-coding | protein-coding | |
| Description | appetite-regulating hormoneIn2c-preproghrelinghrelin, growth hormone secretagogue receptor ligandghrelin/obestatin preprohormoneghrelin/obestatin prepropeptidegrowth hormone-releasing peptidemotilin-related peptideprepro-appetite regulatory hormone | protein SEC13 homologGATOR complex protein SEC13SEC13 homolog, nuclear pore and COPII coating complex componentSEC13-like 1 isoformSEC13-like protein 1SEC13-related protein | |
| Modification date | 20200329 | 20200320 | |
| UniProtAcc | Q9UBU3 | . | |
| Ensembl transtripts involved in fusion gene | ENST00000335542, ENST00000430179, ENST00000422159, ENST00000450603, ENST00000449554, ENST00000446937, ENST00000457360, ENST00000437422, ENST00000439975, ENST00000287656, ENST00000449238, ENST00000429122, ENST00000476283, | ENST00000397109, ENST00000337354, ENST00000350697, ENST00000397117, ENST00000383801, ENST00000492602, | |
| Fusion gene scores | * DoF score | 1 X 2 X 1=2 | 9 X 8 X 4=288 |
| # samples | 2 | 8 | |
| ** MAII score | log2(2/2*10)=3.32192809488736 | log2(8/288*10)=-1.84799690655495 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
| Context | PubMed: GHRL [Title/Abstract] AND SEC13 [Title/Abstract] AND fusion [Title/Abstract] | ||
| Most frequent breakpoint | GHRL(10328388)-SEC13(10343058), # samples:2 | ||
| Anticipated loss of major functional domain due to fusion event. | GHRL-SEC13 seems lost the major protein functional domain in Tgene partner, which is a cell metabolism gene due to the frame-shifted ORF. GHRL-SEC13 seems lost the major protein functional domain in Tgene partner, which is a essential gene due to the frame-shifted ORF. | ||
| * DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
| Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Partner | Gene | GO ID | GO term | PubMed ID |
| Hgene | GHRL | GO:0001937 | negative regulation of endothelial cell proliferation | 15572208 |
| Hgene | GHRL | GO:0008154 | actin polymerization or depolymerization | 15232612 |
| Hgene | GHRL | GO:0009725 | response to hormone | 15232612 |
| Hgene | GHRL | GO:0016358 | dendrite development | 16491079 |
| Hgene | GHRL | GO:0032691 | negative regulation of interleukin-1 beta production | 15232612 |
| Hgene | GHRL | GO:0042127 | regulation of cell proliferation | 15564328|16394173 |
| Hgene | GHRL | GO:0042322 | negative regulation of circadian sleep/wake cycle, REM sleep | 18329818 |
| Hgene | GHRL | GO:0042536 | negative regulation of tumor necrosis factor biosynthetic process | 15232612 |
| Hgene | GHRL | GO:0043066 | negative regulation of apoptotic process | 15158140 |
| Hgene | GHRL | GO:0043627 | response to estrogen | 15292338 |
| Hgene | GHRL | GO:0045409 | negative regulation of interleukin-6 biosynthetic process | 15232612 |
| Hgene | GHRL | GO:0046010 | positive regulation of circadian sleep/wake cycle, non-REM sleep | 18329818 |
| Hgene | GHRL | GO:0046697 | decidualization | 17494105 |
| Hgene | GHRL | GO:0050728 | negative regulation of inflammatory response | 15232612 |
| Hgene | GHRL | GO:0051461 | positive regulation of corticotropin secretion | 12566947 |
| Hgene | GHRL | GO:0051464 | positive regulation of cortisol secretion | 12566947|18329818 |
| Hgene | GHRL | GO:0051965 | positive regulation of synapse assembly | 16491079 |
| Hgene | GHRL | GO:0060124 | positive regulation of growth hormone secretion | 12566947|18329818 |
| Tgene | SEC13 | GO:0090110 | cargo loading into COPII-coated vesicle | 17499046|18843296 |
| Fusion gene breakpoints across GHRL (5'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
| Fusion gene breakpoints across SEC13 (3'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
| Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| Source | Disease | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| ChimerDB4 | UCEC | TCGA-PG-A915 | GHRL | chr3 | 10328387 | - | SEC13 | chr3 | 10343058 | - |
| ChimerDB4 | UCEC | TCGA-PG-A915-01A | GHRL | chr3 | 10328388 | - | SEC13 | chr3 | 10343058 | - |
| ChimerDB4 | UCEC | TCGA-PG-A915-01A | GHRL | chr3 | 10328388 | - | SEC13 | chr3 | 10343058 | - |
| ChimerDB4 | UCEC | TCGA-PG-A915-01A | GHRL | chr3 | 10328387 | - | SEC13 | chr3 | 10343057 | - |
Top |
Fusion Gene ORF analysis for GHRL-SEC13 |
| Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| In-frame | ENST00000335542 | ENST00000397109 | GHRL | chr3 | 10328387 | - | SEC13 | chr3 | 10343058 | - |
| Frame-shift | ENST00000335542 | ENST00000337354 | GHRL | chr3 | 10328387 | - | SEC13 | chr3 | 10343058 | - |
| Frame-shift | ENST00000335542 | ENST00000350697 | GHRL | chr3 | 10328387 | - | SEC13 | chr3 | 10343058 | - |
| 5CDS-intron | ENST00000335542 | ENST00000397117 | GHRL | chr3 | 10328387 | - | SEC13 | chr3 | 10343058 | - |
| 5CDS-intron | ENST00000335542 | ENST00000383801 | GHRL | chr3 | 10328387 | - | SEC13 | chr3 | 10343058 | - |
| 5CDS-intron | ENST00000335542 | ENST00000492602 | GHRL | chr3 | 10328387 | - | SEC13 | chr3 | 10343058 | - |
| Frame-shift | ENST00000430179 | ENST00000397109 | GHRL | chr3 | 10328387 | - | SEC13 | chr3 | 10343058 | - |
| In-frame | ENST00000430179 | ENST00000337354 | GHRL | chr3 | 10328387 | - | SEC13 | chr3 | 10343058 | - |
| In-frame | ENST00000430179 | ENST00000350697 | GHRL | chr3 | 10328387 | - | SEC13 | chr3 | 10343058 | - |
| 5CDS-intron | ENST00000430179 | ENST00000397117 | GHRL | chr3 | 10328387 | - | SEC13 | chr3 | 10343058 | - |
| 5CDS-intron | ENST00000430179 | ENST00000383801 | GHRL | chr3 | 10328387 | - | SEC13 | chr3 | 10343058 | - |
| 5CDS-intron | ENST00000430179 | ENST00000492602 | GHRL | chr3 | 10328387 | - | SEC13 | chr3 | 10343058 | - |
| intron-3CDS | ENST00000422159 | ENST00000397109 | GHRL | chr3 | 10328387 | - | SEC13 | chr3 | 10343058 | - |
| intron-3CDS | ENST00000422159 | ENST00000337354 | GHRL | chr3 | 10328387 | - | SEC13 | chr3 | 10343058 | - |
| intron-3CDS | ENST00000422159 | ENST00000350697 | GHRL | chr3 | 10328387 | - | SEC13 | chr3 | 10343058 | - |
| intron-intron | ENST00000422159 | ENST00000397117 | GHRL | chr3 | 10328387 | - | SEC13 | chr3 | 10343058 | - |
| intron-intron | ENST00000422159 | ENST00000383801 | GHRL | chr3 | 10328387 | - | SEC13 | chr3 | 10343058 | - |
| intron-intron | ENST00000422159 | ENST00000492602 | GHRL | chr3 | 10328387 | - | SEC13 | chr3 | 10343058 | - |
| Frame-shift | ENST00000450603 | ENST00000397109 | GHRL | chr3 | 10328387 | - | SEC13 | chr3 | 10343058 | - |
| In-frame | ENST00000450603 | ENST00000337354 | GHRL | chr3 | 10328387 | - | SEC13 | chr3 | 10343058 | - |
| In-frame | ENST00000450603 | ENST00000350697 | GHRL | chr3 | 10328387 | - | SEC13 | chr3 | 10343058 | - |
| 5CDS-intron | ENST00000450603 | ENST00000397117 | GHRL | chr3 | 10328387 | - | SEC13 | chr3 | 10343058 | - |
| 5CDS-intron | ENST00000450603 | ENST00000383801 | GHRL | chr3 | 10328387 | - | SEC13 | chr3 | 10343058 | - |
| 5CDS-intron | ENST00000450603 | ENST00000492602 | GHRL | chr3 | 10328387 | - | SEC13 | chr3 | 10343058 | - |
| Frame-shift | ENST00000449554 | ENST00000397109 | GHRL | chr3 | 10328387 | - | SEC13 | chr3 | 10343058 | - |
| In-frame | ENST00000449554 | ENST00000337354 | GHRL | chr3 | 10328387 | - | SEC13 | chr3 | 10343058 | - |
| In-frame | ENST00000449554 | ENST00000350697 | GHRL | chr3 | 10328387 | - | SEC13 | chr3 | 10343058 | - |
| 5CDS-intron | ENST00000449554 | ENST00000397117 | GHRL | chr3 | 10328387 | - | SEC13 | chr3 | 10343058 | - |
| 5CDS-intron | ENST00000449554 | ENST00000383801 | GHRL | chr3 | 10328387 | - | SEC13 | chr3 | 10343058 | - |
| 5CDS-intron | ENST00000449554 | ENST00000492602 | GHRL | chr3 | 10328387 | - | SEC13 | chr3 | 10343058 | - |
| intron-3CDS | ENST00000446937 | ENST00000397109 | GHRL | chr3 | 10328387 | - | SEC13 | chr3 | 10343058 | - |
| intron-3CDS | ENST00000446937 | ENST00000337354 | GHRL | chr3 | 10328387 | - | SEC13 | chr3 | 10343058 | - |
| intron-3CDS | ENST00000446937 | ENST00000350697 | GHRL | chr3 | 10328387 | - | SEC13 | chr3 | 10343058 | - |
| intron-intron | ENST00000446937 | ENST00000397117 | GHRL | chr3 | 10328387 | - | SEC13 | chr3 | 10343058 | - |
| intron-intron | ENST00000446937 | ENST00000383801 | GHRL | chr3 | 10328387 | - | SEC13 | chr3 | 10343058 | - |
| intron-intron | ENST00000446937 | ENST00000492602 | GHRL | chr3 | 10328387 | - | SEC13 | chr3 | 10343058 | - |
| Frame-shift | ENST00000457360 | ENST00000397109 | GHRL | chr3 | 10328387 | - | SEC13 | chr3 | 10343058 | - |
| In-frame | ENST00000457360 | ENST00000337354 | GHRL | chr3 | 10328387 | - | SEC13 | chr3 | 10343058 | - |
| In-frame | ENST00000457360 | ENST00000350697 | GHRL | chr3 | 10328387 | - | SEC13 | chr3 | 10343058 | - |
| 5CDS-intron | ENST00000457360 | ENST00000397117 | GHRL | chr3 | 10328387 | - | SEC13 | chr3 | 10343058 | - |
| 5CDS-intron | ENST00000457360 | ENST00000383801 | GHRL | chr3 | 10328387 | - | SEC13 | chr3 | 10343058 | - |
| 5CDS-intron | ENST00000457360 | ENST00000492602 | GHRL | chr3 | 10328387 | - | SEC13 | chr3 | 10343058 | - |
| In-frame | ENST00000437422 | ENST00000397109 | GHRL | chr3 | 10328387 | - | SEC13 | chr3 | 10343058 | - |
| Frame-shift | ENST00000437422 | ENST00000337354 | GHRL | chr3 | 10328387 | - | SEC13 | chr3 | 10343058 | - |
| Frame-shift | ENST00000437422 | ENST00000350697 | GHRL | chr3 | 10328387 | - | SEC13 | chr3 | 10343058 | - |
| 5CDS-intron | ENST00000437422 | ENST00000397117 | GHRL | chr3 | 10328387 | - | SEC13 | chr3 | 10343058 | - |
| 5CDS-intron | ENST00000437422 | ENST00000383801 | GHRL | chr3 | 10328387 | - | SEC13 | chr3 | 10343058 | - |
| 5CDS-intron | ENST00000437422 | ENST00000492602 | GHRL | chr3 | 10328387 | - | SEC13 | chr3 | 10343058 | - |
| In-frame | ENST00000439975 | ENST00000397109 | GHRL | chr3 | 10328387 | - | SEC13 | chr3 | 10343058 | - |
| Frame-shift | ENST00000439975 | ENST00000337354 | GHRL | chr3 | 10328387 | - | SEC13 | chr3 | 10343058 | - |
| Frame-shift | ENST00000439975 | ENST00000350697 | GHRL | chr3 | 10328387 | - | SEC13 | chr3 | 10343058 | - |
| 5CDS-intron | ENST00000439975 | ENST00000397117 | GHRL | chr3 | 10328387 | - | SEC13 | chr3 | 10343058 | - |
| 5CDS-intron | ENST00000439975 | ENST00000383801 | GHRL | chr3 | 10328387 | - | SEC13 | chr3 | 10343058 | - |
| 5CDS-intron | ENST00000439975 | ENST00000492602 | GHRL | chr3 | 10328387 | - | SEC13 | chr3 | 10343058 | - |
| In-frame | ENST00000287656 | ENST00000397109 | GHRL | chr3 | 10328387 | - | SEC13 | chr3 | 10343058 | - |
| Frame-shift | ENST00000287656 | ENST00000337354 | GHRL | chr3 | 10328387 | - | SEC13 | chr3 | 10343058 | - |
| Frame-shift | ENST00000287656 | ENST00000350697 | GHRL | chr3 | 10328387 | - | SEC13 | chr3 | 10343058 | - |
| 5CDS-intron | ENST00000287656 | ENST00000397117 | GHRL | chr3 | 10328387 | - | SEC13 | chr3 | 10343058 | - |
| 5CDS-intron | ENST00000287656 | ENST00000383801 | GHRL | chr3 | 10328387 | - | SEC13 | chr3 | 10343058 | - |
| 5CDS-intron | ENST00000287656 | ENST00000492602 | GHRL | chr3 | 10328387 | - | SEC13 | chr3 | 10343058 | - |
| In-frame | ENST00000449238 | ENST00000397109 | GHRL | chr3 | 10328387 | - | SEC13 | chr3 | 10343058 | - |
| Frame-shift | ENST00000449238 | ENST00000337354 | GHRL | chr3 | 10328387 | - | SEC13 | chr3 | 10343058 | - |
| Frame-shift | ENST00000449238 | ENST00000350697 | GHRL | chr3 | 10328387 | - | SEC13 | chr3 | 10343058 | - |
| 5CDS-intron | ENST00000449238 | ENST00000397117 | GHRL | chr3 | 10328387 | - | SEC13 | chr3 | 10343058 | - |
| 5CDS-intron | ENST00000449238 | ENST00000383801 | GHRL | chr3 | 10328387 | - | SEC13 | chr3 | 10343058 | - |
| 5CDS-intron | ENST00000449238 | ENST00000492602 | GHRL | chr3 | 10328387 | - | SEC13 | chr3 | 10343058 | - |
| Frame-shift | ENST00000429122 | ENST00000397109 | GHRL | chr3 | 10328387 | - | SEC13 | chr3 | 10343058 | - |
| In-frame | ENST00000429122 | ENST00000337354 | GHRL | chr3 | 10328387 | - | SEC13 | chr3 | 10343058 | - |
| In-frame | ENST00000429122 | ENST00000350697 | GHRL | chr3 | 10328387 | - | SEC13 | chr3 | 10343058 | - |
| 5CDS-intron | ENST00000429122 | ENST00000397117 | GHRL | chr3 | 10328387 | - | SEC13 | chr3 | 10343058 | - |
| 5CDS-intron | ENST00000429122 | ENST00000383801 | GHRL | chr3 | 10328387 | - | SEC13 | chr3 | 10343058 | - |
| 5CDS-intron | ENST00000429122 | ENST00000492602 | GHRL | chr3 | 10328387 | - | SEC13 | chr3 | 10343058 | - |
| 5UTR-3CDS | ENST00000476283 | ENST00000397109 | GHRL | chr3 | 10328387 | - | SEC13 | chr3 | 10343058 | - |
| 5UTR-3CDS | ENST00000476283 | ENST00000337354 | GHRL | chr3 | 10328387 | - | SEC13 | chr3 | 10343058 | - |
| 5UTR-3CDS | ENST00000476283 | ENST00000350697 | GHRL | chr3 | 10328387 | - | SEC13 | chr3 | 10343058 | - |
| 5UTR-intron | ENST00000476283 | ENST00000397117 | GHRL | chr3 | 10328387 | - | SEC13 | chr3 | 10343058 | - |
| 5UTR-intron | ENST00000476283 | ENST00000383801 | GHRL | chr3 | 10328387 | - | SEC13 | chr3 | 10343058 | - |
| 5UTR-intron | ENST00000476283 | ENST00000492602 | GHRL | chr3 | 10328387 | - | SEC13 | chr3 | 10343058 | - |
| In-frame | ENST00000335542 | ENST00000397109 | GHRL | chr3 | 10328388 | - | SEC13 | chr3 | 10343058 | - |
| Frame-shift | ENST00000335542 | ENST00000337354 | GHRL | chr3 | 10328388 | - | SEC13 | chr3 | 10343058 | - |
| Frame-shift | ENST00000335542 | ENST00000350697 | GHRL | chr3 | 10328388 | - | SEC13 | chr3 | 10343058 | - |
| 5CDS-intron | ENST00000335542 | ENST00000397117 | GHRL | chr3 | 10328388 | - | SEC13 | chr3 | 10343058 | - |
| 5CDS-intron | ENST00000335542 | ENST00000383801 | GHRL | chr3 | 10328388 | - | SEC13 | chr3 | 10343058 | - |
| 5CDS-intron | ENST00000335542 | ENST00000492602 | GHRL | chr3 | 10328388 | - | SEC13 | chr3 | 10343058 | - |
| Frame-shift | ENST00000430179 | ENST00000397109 | GHRL | chr3 | 10328388 | - | SEC13 | chr3 | 10343058 | - |
| In-frame | ENST00000430179 | ENST00000337354 | GHRL | chr3 | 10328388 | - | SEC13 | chr3 | 10343058 | - |
| In-frame | ENST00000430179 | ENST00000350697 | GHRL | chr3 | 10328388 | - | SEC13 | chr3 | 10343058 | - |
| 5CDS-intron | ENST00000430179 | ENST00000397117 | GHRL | chr3 | 10328388 | - | SEC13 | chr3 | 10343058 | - |
| 5CDS-intron | ENST00000430179 | ENST00000383801 | GHRL | chr3 | 10328388 | - | SEC13 | chr3 | 10343058 | - |
| 5CDS-intron | ENST00000430179 | ENST00000492602 | GHRL | chr3 | 10328388 | - | SEC13 | chr3 | 10343058 | - |
| intron-3CDS | ENST00000422159 | ENST00000397109 | GHRL | chr3 | 10328388 | - | SEC13 | chr3 | 10343058 | - |
| intron-3CDS | ENST00000422159 | ENST00000337354 | GHRL | chr3 | 10328388 | - | SEC13 | chr3 | 10343058 | - |
| intron-3CDS | ENST00000422159 | ENST00000350697 | GHRL | chr3 | 10328388 | - | SEC13 | chr3 | 10343058 | - |
| intron-intron | ENST00000422159 | ENST00000397117 | GHRL | chr3 | 10328388 | - | SEC13 | chr3 | 10343058 | - |
| intron-intron | ENST00000422159 | ENST00000383801 | GHRL | chr3 | 10328388 | - | SEC13 | chr3 | 10343058 | - |
| intron-intron | ENST00000422159 | ENST00000492602 | GHRL | chr3 | 10328388 | - | SEC13 | chr3 | 10343058 | - |
| Frame-shift | ENST00000450603 | ENST00000397109 | GHRL | chr3 | 10328388 | - | SEC13 | chr3 | 10343058 | - |
| In-frame | ENST00000450603 | ENST00000337354 | GHRL | chr3 | 10328388 | - | SEC13 | chr3 | 10343058 | - |
| In-frame | ENST00000450603 | ENST00000350697 | GHRL | chr3 | 10328388 | - | SEC13 | chr3 | 10343058 | - |
| 5CDS-intron | ENST00000450603 | ENST00000397117 | GHRL | chr3 | 10328388 | - | SEC13 | chr3 | 10343058 | - |
| 5CDS-intron | ENST00000450603 | ENST00000383801 | GHRL | chr3 | 10328388 | - | SEC13 | chr3 | 10343058 | - |
| 5CDS-intron | ENST00000450603 | ENST00000492602 | GHRL | chr3 | 10328388 | - | SEC13 | chr3 | 10343058 | - |
| Frame-shift | ENST00000449554 | ENST00000397109 | GHRL | chr3 | 10328388 | - | SEC13 | chr3 | 10343058 | - |
| In-frame | ENST00000449554 | ENST00000337354 | GHRL | chr3 | 10328388 | - | SEC13 | chr3 | 10343058 | - |
| In-frame | ENST00000449554 | ENST00000350697 | GHRL | chr3 | 10328388 | - | SEC13 | chr3 | 10343058 | - |
| 5CDS-intron | ENST00000449554 | ENST00000397117 | GHRL | chr3 | 10328388 | - | SEC13 | chr3 | 10343058 | - |
| 5CDS-intron | ENST00000449554 | ENST00000383801 | GHRL | chr3 | 10328388 | - | SEC13 | chr3 | 10343058 | - |
| 5CDS-intron | ENST00000449554 | ENST00000492602 | GHRL | chr3 | 10328388 | - | SEC13 | chr3 | 10343058 | - |
| intron-3CDS | ENST00000446937 | ENST00000397109 | GHRL | chr3 | 10328388 | - | SEC13 | chr3 | 10343058 | - |
| intron-3CDS | ENST00000446937 | ENST00000337354 | GHRL | chr3 | 10328388 | - | SEC13 | chr3 | 10343058 | - |
| intron-3CDS | ENST00000446937 | ENST00000350697 | GHRL | chr3 | 10328388 | - | SEC13 | chr3 | 10343058 | - |
| intron-intron | ENST00000446937 | ENST00000397117 | GHRL | chr3 | 10328388 | - | SEC13 | chr3 | 10343058 | - |
| intron-intron | ENST00000446937 | ENST00000383801 | GHRL | chr3 | 10328388 | - | SEC13 | chr3 | 10343058 | - |
| intron-intron | ENST00000446937 | ENST00000492602 | GHRL | chr3 | 10328388 | - | SEC13 | chr3 | 10343058 | - |
| Frame-shift | ENST00000457360 | ENST00000397109 | GHRL | chr3 | 10328388 | - | SEC13 | chr3 | 10343058 | - |
| In-frame | ENST00000457360 | ENST00000337354 | GHRL | chr3 | 10328388 | - | SEC13 | chr3 | 10343058 | - |
| In-frame | ENST00000457360 | ENST00000350697 | GHRL | chr3 | 10328388 | - | SEC13 | chr3 | 10343058 | - |
| 5CDS-intron | ENST00000457360 | ENST00000397117 | GHRL | chr3 | 10328388 | - | SEC13 | chr3 | 10343058 | - |
| 5CDS-intron | ENST00000457360 | ENST00000383801 | GHRL | chr3 | 10328388 | - | SEC13 | chr3 | 10343058 | - |
| 5CDS-intron | ENST00000457360 | ENST00000492602 | GHRL | chr3 | 10328388 | - | SEC13 | chr3 | 10343058 | - |
| In-frame | ENST00000437422 | ENST00000397109 | GHRL | chr3 | 10328388 | - | SEC13 | chr3 | 10343058 | - |
| Frame-shift | ENST00000437422 | ENST00000337354 | GHRL | chr3 | 10328388 | - | SEC13 | chr3 | 10343058 | - |
| Frame-shift | ENST00000437422 | ENST00000350697 | GHRL | chr3 | 10328388 | - | SEC13 | chr3 | 10343058 | - |
| 5CDS-intron | ENST00000437422 | ENST00000397117 | GHRL | chr3 | 10328388 | - | SEC13 | chr3 | 10343058 | - |
| 5CDS-intron | ENST00000437422 | ENST00000383801 | GHRL | chr3 | 10328388 | - | SEC13 | chr3 | 10343058 | - |
| 5CDS-intron | ENST00000437422 | ENST00000492602 | GHRL | chr3 | 10328388 | - | SEC13 | chr3 | 10343058 | - |
| In-frame | ENST00000439975 | ENST00000397109 | GHRL | chr3 | 10328388 | - | SEC13 | chr3 | 10343058 | - |
| Frame-shift | ENST00000439975 | ENST00000337354 | GHRL | chr3 | 10328388 | - | SEC13 | chr3 | 10343058 | - |
| Frame-shift | ENST00000439975 | ENST00000350697 | GHRL | chr3 | 10328388 | - | SEC13 | chr3 | 10343058 | - |
| 5CDS-intron | ENST00000439975 | ENST00000397117 | GHRL | chr3 | 10328388 | - | SEC13 | chr3 | 10343058 | - |
| 5CDS-intron | ENST00000439975 | ENST00000383801 | GHRL | chr3 | 10328388 | - | SEC13 | chr3 | 10343058 | - |
| 5CDS-intron | ENST00000439975 | ENST00000492602 | GHRL | chr3 | 10328388 | - | SEC13 | chr3 | 10343058 | - |
| In-frame | ENST00000287656 | ENST00000397109 | GHRL | chr3 | 10328388 | - | SEC13 | chr3 | 10343058 | - |
| Frame-shift | ENST00000287656 | ENST00000337354 | GHRL | chr3 | 10328388 | - | SEC13 | chr3 | 10343058 | - |
| Frame-shift | ENST00000287656 | ENST00000350697 | GHRL | chr3 | 10328388 | - | SEC13 | chr3 | 10343058 | - |
| 5CDS-intron | ENST00000287656 | ENST00000397117 | GHRL | chr3 | 10328388 | - | SEC13 | chr3 | 10343058 | - |
| 5CDS-intron | ENST00000287656 | ENST00000383801 | GHRL | chr3 | 10328388 | - | SEC13 | chr3 | 10343058 | - |
| 5CDS-intron | ENST00000287656 | ENST00000492602 | GHRL | chr3 | 10328388 | - | SEC13 | chr3 | 10343058 | - |
| In-frame | ENST00000449238 | ENST00000397109 | GHRL | chr3 | 10328388 | - | SEC13 | chr3 | 10343058 | - |
| Frame-shift | ENST00000449238 | ENST00000337354 | GHRL | chr3 | 10328388 | - | SEC13 | chr3 | 10343058 | - |
| Frame-shift | ENST00000449238 | ENST00000350697 | GHRL | chr3 | 10328388 | - | SEC13 | chr3 | 10343058 | - |
| 5CDS-intron | ENST00000449238 | ENST00000397117 | GHRL | chr3 | 10328388 | - | SEC13 | chr3 | 10343058 | - |
| 5CDS-intron | ENST00000449238 | ENST00000383801 | GHRL | chr3 | 10328388 | - | SEC13 | chr3 | 10343058 | - |
| 5CDS-intron | ENST00000449238 | ENST00000492602 | GHRL | chr3 | 10328388 | - | SEC13 | chr3 | 10343058 | - |
| Frame-shift | ENST00000429122 | ENST00000397109 | GHRL | chr3 | 10328388 | - | SEC13 | chr3 | 10343058 | - |
| In-frame | ENST00000429122 | ENST00000337354 | GHRL | chr3 | 10328388 | - | SEC13 | chr3 | 10343058 | - |
| In-frame | ENST00000429122 | ENST00000350697 | GHRL | chr3 | 10328388 | - | SEC13 | chr3 | 10343058 | - |
| 5CDS-intron | ENST00000429122 | ENST00000397117 | GHRL | chr3 | 10328388 | - | SEC13 | chr3 | 10343058 | - |
| 5CDS-intron | ENST00000429122 | ENST00000383801 | GHRL | chr3 | 10328388 | - | SEC13 | chr3 | 10343058 | - |
| 5CDS-intron | ENST00000429122 | ENST00000492602 | GHRL | chr3 | 10328388 | - | SEC13 | chr3 | 10343058 | - |
| 5UTR-3CDS | ENST00000476283 | ENST00000397109 | GHRL | chr3 | 10328388 | - | SEC13 | chr3 | 10343058 | - |
| 5UTR-3CDS | ENST00000476283 | ENST00000337354 | GHRL | chr3 | 10328388 | - | SEC13 | chr3 | 10343058 | - |
| 5UTR-3CDS | ENST00000476283 | ENST00000350697 | GHRL | chr3 | 10328388 | - | SEC13 | chr3 | 10343058 | - |
| 5UTR-intron | ENST00000476283 | ENST00000397117 | GHRL | chr3 | 10328388 | - | SEC13 | chr3 | 10343058 | - |
| 5UTR-intron | ENST00000476283 | ENST00000383801 | GHRL | chr3 | 10328388 | - | SEC13 | chr3 | 10343058 | - |
| 5UTR-intron | ENST00000476283 | ENST00000492602 | GHRL | chr3 | 10328388 | - | SEC13 | chr3 | 10343058 | - |
| In-frame | ENST00000335542 | ENST00000397109 | GHRL | chr3 | 10328387 | - | SEC13 | chr3 | 10343057 | - |
| Frame-shift | ENST00000335542 | ENST00000337354 | GHRL | chr3 | 10328387 | - | SEC13 | chr3 | 10343057 | - |
| Frame-shift | ENST00000335542 | ENST00000350697 | GHRL | chr3 | 10328387 | - | SEC13 | chr3 | 10343057 | - |
| 5CDS-intron | ENST00000335542 | ENST00000397117 | GHRL | chr3 | 10328387 | - | SEC13 | chr3 | 10343057 | - |
| 5CDS-intron | ENST00000335542 | ENST00000383801 | GHRL | chr3 | 10328387 | - | SEC13 | chr3 | 10343057 | - |
| 5CDS-intron | ENST00000335542 | ENST00000492602 | GHRL | chr3 | 10328387 | - | SEC13 | chr3 | 10343057 | - |
| Frame-shift | ENST00000430179 | ENST00000397109 | GHRL | chr3 | 10328387 | - | SEC13 | chr3 | 10343057 | - |
| In-frame | ENST00000430179 | ENST00000337354 | GHRL | chr3 | 10328387 | - | SEC13 | chr3 | 10343057 | - |
| In-frame | ENST00000430179 | ENST00000350697 | GHRL | chr3 | 10328387 | - | SEC13 | chr3 | 10343057 | - |
| 5CDS-intron | ENST00000430179 | ENST00000397117 | GHRL | chr3 | 10328387 | - | SEC13 | chr3 | 10343057 | - |
| 5CDS-intron | ENST00000430179 | ENST00000383801 | GHRL | chr3 | 10328387 | - | SEC13 | chr3 | 10343057 | - |
| 5CDS-intron | ENST00000430179 | ENST00000492602 | GHRL | chr3 | 10328387 | - | SEC13 | chr3 | 10343057 | - |
| intron-3CDS | ENST00000422159 | ENST00000397109 | GHRL | chr3 | 10328387 | - | SEC13 | chr3 | 10343057 | - |
| intron-3CDS | ENST00000422159 | ENST00000337354 | GHRL | chr3 | 10328387 | - | SEC13 | chr3 | 10343057 | - |
| intron-3CDS | ENST00000422159 | ENST00000350697 | GHRL | chr3 | 10328387 | - | SEC13 | chr3 | 10343057 | - |
| intron-intron | ENST00000422159 | ENST00000397117 | GHRL | chr3 | 10328387 | - | SEC13 | chr3 | 10343057 | - |
| intron-intron | ENST00000422159 | ENST00000383801 | GHRL | chr3 | 10328387 | - | SEC13 | chr3 | 10343057 | - |
| intron-intron | ENST00000422159 | ENST00000492602 | GHRL | chr3 | 10328387 | - | SEC13 | chr3 | 10343057 | - |
| Frame-shift | ENST00000450603 | ENST00000397109 | GHRL | chr3 | 10328387 | - | SEC13 | chr3 | 10343057 | - |
| In-frame | ENST00000450603 | ENST00000337354 | GHRL | chr3 | 10328387 | - | SEC13 | chr3 | 10343057 | - |
| In-frame | ENST00000450603 | ENST00000350697 | GHRL | chr3 | 10328387 | - | SEC13 | chr3 | 10343057 | - |
| 5CDS-intron | ENST00000450603 | ENST00000397117 | GHRL | chr3 | 10328387 | - | SEC13 | chr3 | 10343057 | - |
| 5CDS-intron | ENST00000450603 | ENST00000383801 | GHRL | chr3 | 10328387 | - | SEC13 | chr3 | 10343057 | - |
| 5CDS-intron | ENST00000450603 | ENST00000492602 | GHRL | chr3 | 10328387 | - | SEC13 | chr3 | 10343057 | - |
| Frame-shift | ENST00000449554 | ENST00000397109 | GHRL | chr3 | 10328387 | - | SEC13 | chr3 | 10343057 | - |
| In-frame | ENST00000449554 | ENST00000337354 | GHRL | chr3 | 10328387 | - | SEC13 | chr3 | 10343057 | - |
| In-frame | ENST00000449554 | ENST00000350697 | GHRL | chr3 | 10328387 | - | SEC13 | chr3 | 10343057 | - |
| 5CDS-intron | ENST00000449554 | ENST00000397117 | GHRL | chr3 | 10328387 | - | SEC13 | chr3 | 10343057 | - |
| 5CDS-intron | ENST00000449554 | ENST00000383801 | GHRL | chr3 | 10328387 | - | SEC13 | chr3 | 10343057 | - |
| 5CDS-intron | ENST00000449554 | ENST00000492602 | GHRL | chr3 | 10328387 | - | SEC13 | chr3 | 10343057 | - |
| intron-3CDS | ENST00000446937 | ENST00000397109 | GHRL | chr3 | 10328387 | - | SEC13 | chr3 | 10343057 | - |
| intron-3CDS | ENST00000446937 | ENST00000337354 | GHRL | chr3 | 10328387 | - | SEC13 | chr3 | 10343057 | - |
| intron-3CDS | ENST00000446937 | ENST00000350697 | GHRL | chr3 | 10328387 | - | SEC13 | chr3 | 10343057 | - |
| intron-intron | ENST00000446937 | ENST00000397117 | GHRL | chr3 | 10328387 | - | SEC13 | chr3 | 10343057 | - |
| intron-intron | ENST00000446937 | ENST00000383801 | GHRL | chr3 | 10328387 | - | SEC13 | chr3 | 10343057 | - |
| intron-intron | ENST00000446937 | ENST00000492602 | GHRL | chr3 | 10328387 | - | SEC13 | chr3 | 10343057 | - |
| Frame-shift | ENST00000457360 | ENST00000397109 | GHRL | chr3 | 10328387 | - | SEC13 | chr3 | 10343057 | - |
| In-frame | ENST00000457360 | ENST00000337354 | GHRL | chr3 | 10328387 | - | SEC13 | chr3 | 10343057 | - |
| In-frame | ENST00000457360 | ENST00000350697 | GHRL | chr3 | 10328387 | - | SEC13 | chr3 | 10343057 | - |
| 5CDS-intron | ENST00000457360 | ENST00000397117 | GHRL | chr3 | 10328387 | - | SEC13 | chr3 | 10343057 | - |
| 5CDS-intron | ENST00000457360 | ENST00000383801 | GHRL | chr3 | 10328387 | - | SEC13 | chr3 | 10343057 | - |
| 5CDS-intron | ENST00000457360 | ENST00000492602 | GHRL | chr3 | 10328387 | - | SEC13 | chr3 | 10343057 | - |
| In-frame | ENST00000437422 | ENST00000397109 | GHRL | chr3 | 10328387 | - | SEC13 | chr3 | 10343057 | - |
| Frame-shift | ENST00000437422 | ENST00000337354 | GHRL | chr3 | 10328387 | - | SEC13 | chr3 | 10343057 | - |
| Frame-shift | ENST00000437422 | ENST00000350697 | GHRL | chr3 | 10328387 | - | SEC13 | chr3 | 10343057 | - |
| 5CDS-intron | ENST00000437422 | ENST00000397117 | GHRL | chr3 | 10328387 | - | SEC13 | chr3 | 10343057 | - |
| 5CDS-intron | ENST00000437422 | ENST00000383801 | GHRL | chr3 | 10328387 | - | SEC13 | chr3 | 10343057 | - |
| 5CDS-intron | ENST00000437422 | ENST00000492602 | GHRL | chr3 | 10328387 | - | SEC13 | chr3 | 10343057 | - |
| In-frame | ENST00000439975 | ENST00000397109 | GHRL | chr3 | 10328387 | - | SEC13 | chr3 | 10343057 | - |
| Frame-shift | ENST00000439975 | ENST00000337354 | GHRL | chr3 | 10328387 | - | SEC13 | chr3 | 10343057 | - |
| Frame-shift | ENST00000439975 | ENST00000350697 | GHRL | chr3 | 10328387 | - | SEC13 | chr3 | 10343057 | - |
| 5CDS-intron | ENST00000439975 | ENST00000397117 | GHRL | chr3 | 10328387 | - | SEC13 | chr3 | 10343057 | - |
| 5CDS-intron | ENST00000439975 | ENST00000383801 | GHRL | chr3 | 10328387 | - | SEC13 | chr3 | 10343057 | - |
| 5CDS-intron | ENST00000439975 | ENST00000492602 | GHRL | chr3 | 10328387 | - | SEC13 | chr3 | 10343057 | - |
| In-frame | ENST00000287656 | ENST00000397109 | GHRL | chr3 | 10328387 | - | SEC13 | chr3 | 10343057 | - |
| Frame-shift | ENST00000287656 | ENST00000337354 | GHRL | chr3 | 10328387 | - | SEC13 | chr3 | 10343057 | - |
| Frame-shift | ENST00000287656 | ENST00000350697 | GHRL | chr3 | 10328387 | - | SEC13 | chr3 | 10343057 | - |
| 5CDS-intron | ENST00000287656 | ENST00000397117 | GHRL | chr3 | 10328387 | - | SEC13 | chr3 | 10343057 | - |
| 5CDS-intron | ENST00000287656 | ENST00000383801 | GHRL | chr3 | 10328387 | - | SEC13 | chr3 | 10343057 | - |
| 5CDS-intron | ENST00000287656 | ENST00000492602 | GHRL | chr3 | 10328387 | - | SEC13 | chr3 | 10343057 | - |
| In-frame | ENST00000449238 | ENST00000397109 | GHRL | chr3 | 10328387 | - | SEC13 | chr3 | 10343057 | - |
| Frame-shift | ENST00000449238 | ENST00000337354 | GHRL | chr3 | 10328387 | - | SEC13 | chr3 | 10343057 | - |
| Frame-shift | ENST00000449238 | ENST00000350697 | GHRL | chr3 | 10328387 | - | SEC13 | chr3 | 10343057 | - |
| 5CDS-intron | ENST00000449238 | ENST00000397117 | GHRL | chr3 | 10328387 | - | SEC13 | chr3 | 10343057 | - |
| 5CDS-intron | ENST00000449238 | ENST00000383801 | GHRL | chr3 | 10328387 | - | SEC13 | chr3 | 10343057 | - |
| 5CDS-intron | ENST00000449238 | ENST00000492602 | GHRL | chr3 | 10328387 | - | SEC13 | chr3 | 10343057 | - |
| Frame-shift | ENST00000429122 | ENST00000397109 | GHRL | chr3 | 10328387 | - | SEC13 | chr3 | 10343057 | - |
| In-frame | ENST00000429122 | ENST00000337354 | GHRL | chr3 | 10328387 | - | SEC13 | chr3 | 10343057 | - |
| In-frame | ENST00000429122 | ENST00000350697 | GHRL | chr3 | 10328387 | - | SEC13 | chr3 | 10343057 | - |
| 5CDS-intron | ENST00000429122 | ENST00000397117 | GHRL | chr3 | 10328387 | - | SEC13 | chr3 | 10343057 | - |
| 5CDS-intron | ENST00000429122 | ENST00000383801 | GHRL | chr3 | 10328387 | - | SEC13 | chr3 | 10343057 | - |
| 5CDS-intron | ENST00000429122 | ENST00000492602 | GHRL | chr3 | 10328387 | - | SEC13 | chr3 | 10343057 | - |
| 5UTR-3CDS | ENST00000476283 | ENST00000397109 | GHRL | chr3 | 10328387 | - | SEC13 | chr3 | 10343057 | - |
| 5UTR-3CDS | ENST00000476283 | ENST00000337354 | GHRL | chr3 | 10328387 | - | SEC13 | chr3 | 10343057 | - |
| 5UTR-3CDS | ENST00000476283 | ENST00000350697 | GHRL | chr3 | 10328387 | - | SEC13 | chr3 | 10343057 | - |
| 5UTR-intron | ENST00000476283 | ENST00000397117 | GHRL | chr3 | 10328387 | - | SEC13 | chr3 | 10343057 | - |
| 5UTR-intron | ENST00000476283 | ENST00000383801 | GHRL | chr3 | 10328387 | - | SEC13 | chr3 | 10343057 | - |
| 5UTR-intron | ENST00000476283 | ENST00000492602 | GHRL | chr3 | 10328387 | - | SEC13 | chr3 | 10343057 | - |
| ORFfinder result based on the fusion transcript sequence of in-frame fusion genes. |
| Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | Seq length (transcript) | BP loci (transcript) | Predicted start (transcript) | Predicted stop (transcript) | Seq length (amino acids) |
| DeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated. |
| Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | No-coding score | Coding score |
Top |
Fusion Genomic Features for GHRL-SEC13 |
| FusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints. |
| Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | 1-p | p (fusion gene breakpoint) |
| Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page. |
| Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page. |
Top |
Fusion Protein Features for GHRL-SEC13 |
| Go to FGviewer for the breakpoints of chr3:10328387-chr3:10343058 - FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels. |
 |
| Main function of each fusion partner protein. (from UniProt) |
| Hgene | Tgene |
| GHRL | . |
| FUNCTION: Ghrelin is the ligand for growth hormone secretagogue receptor type 1 (GHSR). Induces the release of growth hormone from the pituitary. Has an appetite-stimulating effect, induces adiposity and stimulates gastric acid secretion. Involved in growth regulation.; FUNCTION: Obestatin may be the ligand for GPR39. May have an appetite-reducing effect resulting in decreased food intake. May reduce gastric emptying activity and jejunal motility (By similarity). {ECO:0000250}. | FUNCTION: Might normally function as a transcriptional repressor. EWS-fusion-proteins (EFPS) may play a role in the tumorigenic process. They may disturb gene expression by mimicking, or interfering with the normal function of CTD-POLII within the transcription initiation complex. They may also contribute to an aberrant activation of the fusion protein target genes. |
| Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at * Minus value of BPloci means that the break pointn is located before the CDS. |
| - In-frame and retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| - In-frame and not-retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| Tgene | SEC13 | chr3:10328387 | chr3:10343057 | ENST00000337354 | 8 | 10 | 101_144 | 288.0 | 326.0 | Repeat | Note=WD 3 | |
| Tgene | SEC13 | chr3:10328387 | chr3:10343057 | ENST00000337354 | 8 | 10 | 11_50 | 288.0 | 326.0 | Repeat | Note=WD 1 | |
| Tgene | SEC13 | chr3:10328387 | chr3:10343057 | ENST00000337354 | 8 | 10 | 148_204 | 288.0 | 326.0 | Repeat | Note=WD 4 | |
| Tgene | SEC13 | chr3:10328387 | chr3:10343057 | ENST00000337354 | 8 | 10 | 210_253 | 288.0 | 326.0 | Repeat | Note=WD 5 | |
| Tgene | SEC13 | chr3:10328387 | chr3:10343057 | ENST00000337354 | 8 | 10 | 260_299 | 288.0 | 326.0 | Repeat | Note=WD 6 | |
| Tgene | SEC13 | chr3:10328387 | chr3:10343057 | ENST00000337354 | 8 | 10 | 55_96 | 288.0 | 326.0 | Repeat | Note=WD 2 | |
| Tgene | SEC13 | chr3:10328387 | chr3:10343057 | ENST00000350697 | 7 | 9 | 101_144 | 285.0 | 323.0 | Repeat | Note=WD 3 | |
| Tgene | SEC13 | chr3:10328387 | chr3:10343057 | ENST00000350697 | 7 | 9 | 11_50 | 285.0 | 323.0 | Repeat | Note=WD 1 | |
| Tgene | SEC13 | chr3:10328387 | chr3:10343057 | ENST00000350697 | 7 | 9 | 148_204 | 285.0 | 323.0 | Repeat | Note=WD 4 | |
| Tgene | SEC13 | chr3:10328387 | chr3:10343057 | ENST00000350697 | 7 | 9 | 210_253 | 285.0 | 323.0 | Repeat | Note=WD 5 | |
| Tgene | SEC13 | chr3:10328387 | chr3:10343057 | ENST00000350697 | 7 | 9 | 260_299 | 285.0 | 323.0 | Repeat | Note=WD 6 | |
| Tgene | SEC13 | chr3:10328387 | chr3:10343057 | ENST00000350697 | 7 | 9 | 55_96 | 285.0 | 323.0 | Repeat | Note=WD 2 | |
| Tgene | SEC13 | chr3:10328387 | chr3:10343057 | ENST00000397109 | 7 | 9 | 101_144 | 271.0 | 309.0 | Repeat | Note=WD 3 | |
| Tgene | SEC13 | chr3:10328387 | chr3:10343057 | ENST00000397109 | 7 | 9 | 11_50 | 271.0 | 309.0 | Repeat | Note=WD 1 | |
| Tgene | SEC13 | chr3:10328387 | chr3:10343057 | ENST00000397109 | 7 | 9 | 148_204 | 271.0 | 309.0 | Repeat | Note=WD 4 | |
| Tgene | SEC13 | chr3:10328387 | chr3:10343057 | ENST00000397109 | 7 | 9 | 210_253 | 271.0 | 309.0 | Repeat | Note=WD 5 | |
| Tgene | SEC13 | chr3:10328387 | chr3:10343057 | ENST00000397109 | 7 | 9 | 260_299 | 271.0 | 309.0 | Repeat | Note=WD 6 | |
| Tgene | SEC13 | chr3:10328387 | chr3:10343057 | ENST00000397109 | 7 | 9 | 55_96 | 271.0 | 309.0 | Repeat | Note=WD 2 | |
| Tgene | SEC13 | chr3:10328387 | chr3:10343058 | ENST00000337354 | 8 | 10 | 101_144 | 288.0 | 326.0 | Repeat | Note=WD 3 | |
| Tgene | SEC13 | chr3:10328387 | chr3:10343058 | ENST00000337354 | 8 | 10 | 11_50 | 288.0 | 326.0 | Repeat | Note=WD 1 | |
| Tgene | SEC13 | chr3:10328387 | chr3:10343058 | ENST00000337354 | 8 | 10 | 148_204 | 288.0 | 326.0 | Repeat | Note=WD 4 | |
| Tgene | SEC13 | chr3:10328387 | chr3:10343058 | ENST00000337354 | 8 | 10 | 210_253 | 288.0 | 326.0 | Repeat | Note=WD 5 | |
| Tgene | SEC13 | chr3:10328387 | chr3:10343058 | ENST00000337354 | 8 | 10 | 260_299 | 288.0 | 326.0 | Repeat | Note=WD 6 | |
| Tgene | SEC13 | chr3:10328387 | chr3:10343058 | ENST00000337354 | 8 | 10 | 55_96 | 288.0 | 326.0 | Repeat | Note=WD 2 | |
| Tgene | SEC13 | chr3:10328387 | chr3:10343058 | ENST00000350697 | 7 | 9 | 101_144 | 285.0 | 323.0 | Repeat | Note=WD 3 | |
| Tgene | SEC13 | chr3:10328387 | chr3:10343058 | ENST00000350697 | 7 | 9 | 11_50 | 285.0 | 323.0 | Repeat | Note=WD 1 | |
| Tgene | SEC13 | chr3:10328387 | chr3:10343058 | ENST00000350697 | 7 | 9 | 148_204 | 285.0 | 323.0 | Repeat | Note=WD 4 | |
| Tgene | SEC13 | chr3:10328387 | chr3:10343058 | ENST00000350697 | 7 | 9 | 210_253 | 285.0 | 323.0 | Repeat | Note=WD 5 | |
| Tgene | SEC13 | chr3:10328387 | chr3:10343058 | ENST00000350697 | 7 | 9 | 260_299 | 285.0 | 323.0 | Repeat | Note=WD 6 | |
| Tgene | SEC13 | chr3:10328387 | chr3:10343058 | ENST00000350697 | 7 | 9 | 55_96 | 285.0 | 323.0 | Repeat | Note=WD 2 | |
| Tgene | SEC13 | chr3:10328387 | chr3:10343058 | ENST00000397109 | 7 | 9 | 101_144 | 271.0 | 309.0 | Repeat | Note=WD 3 | |
| Tgene | SEC13 | chr3:10328387 | chr3:10343058 | ENST00000397109 | 7 | 9 | 11_50 | 271.0 | 309.0 | Repeat | Note=WD 1 | |
| Tgene | SEC13 | chr3:10328387 | chr3:10343058 | ENST00000397109 | 7 | 9 | 148_204 | 271.0 | 309.0 | Repeat | Note=WD 4 | |
| Tgene | SEC13 | chr3:10328387 | chr3:10343058 | ENST00000397109 | 7 | 9 | 210_253 | 271.0 | 309.0 | Repeat | Note=WD 5 | |
| Tgene | SEC13 | chr3:10328387 | chr3:10343058 | ENST00000397109 | 7 | 9 | 260_299 | 271.0 | 309.0 | Repeat | Note=WD 6 | |
| Tgene | SEC13 | chr3:10328387 | chr3:10343058 | ENST00000397109 | 7 | 9 | 55_96 | 271.0 | 309.0 | Repeat | Note=WD 2 | |
| Tgene | SEC13 | chr3:10328388 | chr3:10343058 | ENST00000337354 | 8 | 10 | 101_144 | 288.0 | 326.0 | Repeat | Note=WD 3 | |
| Tgene | SEC13 | chr3:10328388 | chr3:10343058 | ENST00000337354 | 8 | 10 | 11_50 | 288.0 | 326.0 | Repeat | Note=WD 1 | |
| Tgene | SEC13 | chr3:10328388 | chr3:10343058 | ENST00000337354 | 8 | 10 | 148_204 | 288.0 | 326.0 | Repeat | Note=WD 4 | |
| Tgene | SEC13 | chr3:10328388 | chr3:10343058 | ENST00000337354 | 8 | 10 | 210_253 | 288.0 | 326.0 | Repeat | Note=WD 5 | |
| Tgene | SEC13 | chr3:10328388 | chr3:10343058 | ENST00000337354 | 8 | 10 | 260_299 | 288.0 | 326.0 | Repeat | Note=WD 6 | |
| Tgene | SEC13 | chr3:10328388 | chr3:10343058 | ENST00000337354 | 8 | 10 | 55_96 | 288.0 | 326.0 | Repeat | Note=WD 2 | |
| Tgene | SEC13 | chr3:10328388 | chr3:10343058 | ENST00000350697 | 7 | 9 | 101_144 | 285.0 | 323.0 | Repeat | Note=WD 3 | |
| Tgene | SEC13 | chr3:10328388 | chr3:10343058 | ENST00000350697 | 7 | 9 | 11_50 | 285.0 | 323.0 | Repeat | Note=WD 1 | |
| Tgene | SEC13 | chr3:10328388 | chr3:10343058 | ENST00000350697 | 7 | 9 | 148_204 | 285.0 | 323.0 | Repeat | Note=WD 4 | |
| Tgene | SEC13 | chr3:10328388 | chr3:10343058 | ENST00000350697 | 7 | 9 | 210_253 | 285.0 | 323.0 | Repeat | Note=WD 5 | |
| Tgene | SEC13 | chr3:10328388 | chr3:10343058 | ENST00000350697 | 7 | 9 | 260_299 | 285.0 | 323.0 | Repeat | Note=WD 6 | |
| Tgene | SEC13 | chr3:10328388 | chr3:10343058 | ENST00000350697 | 7 | 9 | 55_96 | 285.0 | 323.0 | Repeat | Note=WD 2 | |
| Tgene | SEC13 | chr3:10328388 | chr3:10343058 | ENST00000397109 | 7 | 9 | 101_144 | 271.0 | 309.0 | Repeat | Note=WD 3 | |
| Tgene | SEC13 | chr3:10328388 | chr3:10343058 | ENST00000397109 | 7 | 9 | 11_50 | 271.0 | 309.0 | Repeat | Note=WD 1 | |
| Tgene | SEC13 | chr3:10328388 | chr3:10343058 | ENST00000397109 | 7 | 9 | 148_204 | 271.0 | 309.0 | Repeat | Note=WD 4 | |
| Tgene | SEC13 | chr3:10328388 | chr3:10343058 | ENST00000397109 | 7 | 9 | 210_253 | 271.0 | 309.0 | Repeat | Note=WD 5 | |
| Tgene | SEC13 | chr3:10328388 | chr3:10343058 | ENST00000397109 | 7 | 9 | 260_299 | 271.0 | 309.0 | Repeat | Note=WD 6 | |
| Tgene | SEC13 | chr3:10328388 | chr3:10343058 | ENST00000397109 | 7 | 9 | 55_96 | 271.0 | 309.0 | Repeat | Note=WD 2 |
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Fusion Gene Sequence for GHRL-SEC13 |
| For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones. |
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Fusion Gene PPI Analysis for GHRL-SEC13 |
| Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in |
| Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
| Hgene | Hgene's interactors | Tgene | Tgene's interactors |
| - Retained PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
| - Lost PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
| - Retained PPIs, but lost function due to frame-shift fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Related Drugs for GHRL-SEC13 |
| Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.8 2021-05-08) |
| Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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Related Diseases for GHRL-SEC13 |
| Diseases associated with fusion partners. (DisGeNet 4.0) |
| Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
| Hgene | GHRL | C0038358 | Gastric ulcer | 2 | CTD_human |
| Hgene | GHRL | C0001418 | Adenocarcinoma | 1 | CTD_human |
| Hgene | GHRL | C0005974 | Bone Resorption | 1 | CTD_human |
| Hgene | GHRL | C0006625 | Cachexia | 1 | CTD_human |
| Hgene | GHRL | C0009171 | Cocaine Abuse | 1 | CTD_human |
| Hgene | GHRL | C0009319 | Colitis | 1 | CTD_human |
| Hgene | GHRL | C0009324 | Ulcerative Colitis | 1 | CTD_human |
| Hgene | GHRL | C0011573 | Endogenous depression | 1 | CTD_human |
| Hgene | GHRL | C0011581 | Depressive disorder | 1 | CTD_human |
| Hgene | GHRL | C0011999 | Diastematomyelia | 1 | CTD_human |
| Hgene | GHRL | C0014859 | Esophageal Neoplasms | 1 | CTD_human |
| Hgene | GHRL | C0018801 | Heart failure | 1 | CTD_human |
| Hgene | GHRL | C0018802 | Congestive heart failure | 1 | CTD_human |
| Hgene | GHRL | C0022333 | Jacksonian Seizure | 1 | CTD_human |
| Hgene | GHRL | C0023212 | Left-Sided Heart Failure | 1 | CTD_human |
| Hgene | GHRL | C0025193 | Melancholia | 1 | CTD_human |
| Hgene | GHRL | C0027746 | Nerve Degeneration | 1 | CTD_human |
| Hgene | GHRL | C0027794 | Neural Tube Defects | 1 | CTD_human |
| Hgene | GHRL | C0027806 | Neurenteric Cyst | 1 | CTD_human |
| Hgene | GHRL | C0035126 | Reperfusion Injury | 1 | CTD_human |
| Hgene | GHRL | C0036572 | Seizures | 1 | CTD_human |
| Hgene | GHRL | C0041696 | Unipolar Depression | 1 | CTD_human |
| Hgene | GHRL | C0043094 | Weight Gain | 1 | CTD_human |
| Hgene | GHRL | C0080218 | Tethered Cord Syndrome | 1 | CTD_human |
| Hgene | GHRL | C0086133 | Depressive Syndrome | 1 | CTD_human |
| Hgene | GHRL | C0149958 | Complex partial seizures | 1 | CTD_human |
| Hgene | GHRL | C0152234 | Iniencephaly | 1 | CTD_human |
| Hgene | GHRL | C0152426 | Craniorachischisis | 1 | CTD_human |
| Hgene | GHRL | C0205641 | Adenocarcinoma, Basal Cell | 1 | CTD_human |
| Hgene | GHRL | C0205642 | Adenocarcinoma, Oxyphilic | 1 | CTD_human |
| Hgene | GHRL | C0205643 | Carcinoma, Cribriform | 1 | CTD_human |
| Hgene | GHRL | C0205644 | Carcinoma, Granular Cell | 1 | CTD_human |
| Hgene | GHRL | C0205645 | Adenocarcinoma, Tubular | 1 | CTD_human |
| Hgene | GHRL | C0234533 | Generalized seizures | 1 | CTD_human |
| Hgene | GHRL | C0234535 | Clonic Seizures | 1 | CTD_human |
| Hgene | GHRL | C0235527 | Heart Failure, Right-Sided | 1 | CTD_human |
| Hgene | GHRL | C0236736 | Cocaine-Related Disorders | 1 | CTD_human |
| Hgene | GHRL | C0266453 | Exencephaly | 1 | CTD_human |
| Hgene | GHRL | C0270824 | Visual seizure | 1 | CTD_human |
| Hgene | GHRL | C0270844 | Tonic Seizures | 1 | CTD_human |
| Hgene | GHRL | C0270846 | Epileptic drop attack | 1 | CTD_human |
| Hgene | GHRL | C0282126 | Depression, Neurotic | 1 | CTD_human |
| Hgene | GHRL | C0344479 | Spinal Cord Myelodysplasia | 1 | CTD_human |
| Hgene | GHRL | C0422850 | Seizures, Somatosensory | 1 | CTD_human |
| Hgene | GHRL | C0422852 | Seizures, Auditory | 1 | CTD_human |
| Hgene | GHRL | C0422853 | Olfactory seizure | 1 | CTD_human |
| Hgene | GHRL | C0422854 | Gustatory seizure | 1 | CTD_human |
| Hgene | GHRL | C0422855 | Vertiginous seizure | 1 | CTD_human |
| Hgene | GHRL | C0494475 | Tonic - clonic seizures | 1 | CTD_human |
| Hgene | GHRL | C0546837 | Malignant neoplasm of esophagus | 1 | CTD_human |
| Hgene | GHRL | C0600427 | Cocaine Dependence | 1 | CTD_human |
| Hgene | GHRL | C0687132 | heavy drinking | 1 | PSYGENET |
| Hgene | GHRL | C0702169 | Acrania | 1 | CTD_human |
| Hgene | GHRL | C0751056 | Non-epileptic convulsion | 1 | CTD_human |
| Hgene | GHRL | C0751110 | Single Seizure | 1 | CTD_human |
| Hgene | GHRL | C0751123 | Atonic Absence Seizures | 1 | CTD_human |
| Hgene | GHRL | C0751494 | Convulsive Seizures | 1 | CTD_human |
| Hgene | GHRL | C0751495 | Seizures, Focal | 1 | CTD_human |
| Hgene | GHRL | C0751496 | Seizures, Sensory | 1 | CTD_human |
| Hgene | GHRL | C1959583 | Myocardial Failure | 1 | CTD_human |
| Hgene | GHRL | C1961112 | Heart Decompensation | 1 | CTD_human |
| Hgene | GHRL | C3495874 | Nonepileptic Seizures | 1 | CTD_human |
| Hgene | GHRL | C4048158 | Convulsions | 1 | CTD_human |
| Hgene | GHRL | C4316903 | Absence Seizures | 1 | CTD_human |
| Hgene | GHRL | C4317109 | Epileptic Seizures | 1 | CTD_human |
| Hgene | GHRL | C4317123 | Myoclonic Seizures | 1 | CTD_human |
| Hgene | GHRL | C4505436 | Generalized Absence Seizures | 1 | CTD_human |
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