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Center for Computational Systems Medicine
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Fusion Gene Summary

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Fusion Gene ORF analysis

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Fusion Genomic Features

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Fusion Protein Features

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Fusion Gene Sequence

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Fusion Gene PPI analysis

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Related Drugs

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Related Diseases

Fusion gene:HBS1L-AHI1 (FusionGDB2 ID:35586)

Fusion Gene Summary for HBS1L-AHI1

check button Fusion gene summary
Fusion gene informationFusion gene name: HBS1L-AHI1
Fusion gene ID: 35586
HgeneTgene
Gene symbol

HBS1L

AHI1

Gene ID

10767

54806

Gene nameHBS1 like translational GTPaseAbelson helper integration site 1
SynonymsEF-1a|ERFS|HBS1|HSPC276|eRF3cAHI-1|JBTS3|ORF1|dJ71N10.1
Cytomap

6q23.3

6q23.3

Type of geneprotein-codingprotein-coding
DescriptionHBS1-like proteinERF3-similar proteinHsp70 subfamily B suppressor 1-like proteineRF3 family memberjouberinabelson helper integration site 1 protein homologcontatins SH3 and WD40 domains
Modification date2020031320200313
UniProtAcc

Q9Y450

Q8N157

Ensembl transtripts involved in fusion geneENST00000367837, ENST00000527578, 
ENST00000415177, ENST00000367826, 
ENST00000367824, ENST00000445176, 
ENST00000314674, ENST00000367822, 
ENST00000367820, ENST00000525067, 
ENST00000367800, ENST00000457866, 
ENST00000417892, ENST00000327035, 
ENST00000488690, ENST00000367798, 
ENST00000528103, ENST00000534469, 
ENST00000531527, 
Fusion gene scores* DoF score6 X 5 X 6=1809 X 10 X 7=630
# samples 710
** MAII scorelog2(7/180*10)=-1.36257007938471
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
log2(10/630*10)=-2.65535182861255
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
Context

PubMed: HBS1L [Title/Abstract] AND AHI1 [Title/Abstract] AND fusion [Title/Abstract]

Most frequent breakpointAHI1(135715914)-HBS1L(135287611), # samples:2
HBS1L(135360710)-AHI1(135788772), # samples:1
Anticipated loss of major functional domain due to fusion event.AHI1-HBS1L seems lost the major protein functional domain in Hgene partner, which is a essential gene due to the frame-shifted ORF.
AHI1-HBS1L seems lost the major protein functional domain in Tgene partner, which is a essential gene due to the frame-shifted ORF.
HBS1L-AHI1 seems lost the major protein functional domain in Hgene partner, which is a essential gene due to the frame-shifted ORF.
HBS1L-AHI1 seems lost the major protein functional domain in Tgene partner, which is a essential gene due to the frame-shifted ORF.
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID

check buttonFusion gene breakpoints across HBS1L (5'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.

check buttonFusion gene breakpoints across AHI1 (3'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.

check button Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0)
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
SourceDiseaseSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
ChimerDB4ESCATCGA-L5-A8NEHBS1Lchr6

135360710

-AHI1chr6

135788772

-


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Fusion Gene ORF analysis for HBS1L-AHI1

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
Frame-shiftENST00000367837ENST00000367800HBS1Lchr6

135360710

-AHI1chr6

135788772

-
Frame-shiftENST00000367837ENST00000457866HBS1Lchr6

135360710

-AHI1chr6

135788772

-
5CDS-intronENST00000367837ENST00000417892HBS1Lchr6

135360710

-AHI1chr6

135788772

-
5CDS-intronENST00000367837ENST00000327035HBS1Lchr6

135360710

-AHI1chr6

135788772

-
5CDS-intronENST00000367837ENST00000488690HBS1Lchr6

135360710

-AHI1chr6

135788772

-
5CDS-intronENST00000367837ENST00000367798HBS1Lchr6

135360710

-AHI1chr6

135788772

-
5CDS-intronENST00000367837ENST00000528103HBS1Lchr6

135360710

-AHI1chr6

135788772

-
5CDS-intronENST00000367837ENST00000534469HBS1Lchr6

135360710

-AHI1chr6

135788772

-
5CDS-intronENST00000367837ENST00000531527HBS1Lchr6

135360710

-AHI1chr6

135788772

-
intron-3CDSENST00000527578ENST00000367800HBS1Lchr6

135360710

-AHI1chr6

135788772

-
intron-3CDSENST00000527578ENST00000457866HBS1Lchr6

135360710

-AHI1chr6

135788772

-
intron-intronENST00000527578ENST00000417892HBS1Lchr6

135360710

-AHI1chr6

135788772

-
intron-intronENST00000527578ENST00000327035HBS1Lchr6

135360710

-AHI1chr6

135788772

-
intron-intronENST00000527578ENST00000488690HBS1Lchr6

135360710

-AHI1chr6

135788772

-
intron-intronENST00000527578ENST00000367798HBS1Lchr6

135360710

-AHI1chr6

135788772

-
intron-intronENST00000527578ENST00000528103HBS1Lchr6

135360710

-AHI1chr6

135788772

-
intron-intronENST00000527578ENST00000534469HBS1Lchr6

135360710

-AHI1chr6

135788772

-
intron-intronENST00000527578ENST00000531527HBS1Lchr6

135360710

-AHI1chr6

135788772

-
intron-3CDSENST00000415177ENST00000367800HBS1Lchr6

135360710

-AHI1chr6

135788772

-
intron-3CDSENST00000415177ENST00000457866HBS1Lchr6

135360710

-AHI1chr6

135788772

-
intron-intronENST00000415177ENST00000417892HBS1Lchr6

135360710

-AHI1chr6

135788772

-
intron-intronENST00000415177ENST00000327035HBS1Lchr6

135360710

-AHI1chr6

135788772

-
intron-intronENST00000415177ENST00000488690HBS1Lchr6

135360710

-AHI1chr6

135788772

-
intron-intronENST00000415177ENST00000367798HBS1Lchr6

135360710

-AHI1chr6

135788772

-
intron-intronENST00000415177ENST00000528103HBS1Lchr6

135360710

-AHI1chr6

135788772

-
intron-intronENST00000415177ENST00000534469HBS1Lchr6

135360710

-AHI1chr6

135788772

-
intron-intronENST00000415177ENST00000531527HBS1Lchr6

135360710

-AHI1chr6

135788772

-
Frame-shiftENST00000367826ENST00000367800HBS1Lchr6

135360710

-AHI1chr6

135788772

-
Frame-shiftENST00000367826ENST00000457866HBS1Lchr6

135360710

-AHI1chr6

135788772

-
5CDS-intronENST00000367826ENST00000417892HBS1Lchr6

135360710

-AHI1chr6

135788772

-
5CDS-intronENST00000367826ENST00000327035HBS1Lchr6

135360710

-AHI1chr6

135788772

-
5CDS-intronENST00000367826ENST00000488690HBS1Lchr6

135360710

-AHI1chr6

135788772

-
5CDS-intronENST00000367826ENST00000367798HBS1Lchr6

135360710

-AHI1chr6

135788772

-
5CDS-intronENST00000367826ENST00000528103HBS1Lchr6

135360710

-AHI1chr6

135788772

-
5CDS-intronENST00000367826ENST00000534469HBS1Lchr6

135360710

-AHI1chr6

135788772

-
5CDS-intronENST00000367826ENST00000531527HBS1Lchr6

135360710

-AHI1chr6

135788772

-
intron-3CDSENST00000367824ENST00000367800HBS1Lchr6

135360710

-AHI1chr6

135788772

-
intron-3CDSENST00000367824ENST00000457866HBS1Lchr6

135360710

-AHI1chr6

135788772

-
intron-intronENST00000367824ENST00000417892HBS1Lchr6

135360710

-AHI1chr6

135788772

-
intron-intronENST00000367824ENST00000327035HBS1Lchr6

135360710

-AHI1chr6

135788772

-
intron-intronENST00000367824ENST00000488690HBS1Lchr6

135360710

-AHI1chr6

135788772

-
intron-intronENST00000367824ENST00000367798HBS1Lchr6

135360710

-AHI1chr6

135788772

-
intron-intronENST00000367824ENST00000528103HBS1Lchr6

135360710

-AHI1chr6

135788772

-
intron-intronENST00000367824ENST00000534469HBS1Lchr6

135360710

-AHI1chr6

135788772

-
intron-intronENST00000367824ENST00000531527HBS1Lchr6

135360710

-AHI1chr6

135788772

-
intron-3CDSENST00000445176ENST00000367800HBS1Lchr6

135360710

-AHI1chr6

135788772

-
intron-3CDSENST00000445176ENST00000457866HBS1Lchr6

135360710

-AHI1chr6

135788772

-
intron-intronENST00000445176ENST00000417892HBS1Lchr6

135360710

-AHI1chr6

135788772

-
intron-intronENST00000445176ENST00000327035HBS1Lchr6

135360710

-AHI1chr6

135788772

-
intron-intronENST00000445176ENST00000488690HBS1Lchr6

135360710

-AHI1chr6

135788772

-
intron-intronENST00000445176ENST00000367798HBS1Lchr6

135360710

-AHI1chr6

135788772

-
intron-intronENST00000445176ENST00000528103HBS1Lchr6

135360710

-AHI1chr6

135788772

-
intron-intronENST00000445176ENST00000534469HBS1Lchr6

135360710

-AHI1chr6

135788772

-
intron-intronENST00000445176ENST00000531527HBS1Lchr6

135360710

-AHI1chr6

135788772

-
Frame-shiftENST00000314674ENST00000367800HBS1Lchr6

135360710

-AHI1chr6

135788772

-
Frame-shiftENST00000314674ENST00000457866HBS1Lchr6

135360710

-AHI1chr6

135788772

-
5CDS-intronENST00000314674ENST00000417892HBS1Lchr6

135360710

-AHI1chr6

135788772

-
5CDS-intronENST00000314674ENST00000327035HBS1Lchr6

135360710

-AHI1chr6

135788772

-
5CDS-intronENST00000314674ENST00000488690HBS1Lchr6

135360710

-AHI1chr6

135788772

-
5CDS-intronENST00000314674ENST00000367798HBS1Lchr6

135360710

-AHI1chr6

135788772

-
5CDS-intronENST00000314674ENST00000528103HBS1Lchr6

135360710

-AHI1chr6

135788772

-
5CDS-intronENST00000314674ENST00000534469HBS1Lchr6

135360710

-AHI1chr6

135788772

-
5CDS-intronENST00000314674ENST00000531527HBS1Lchr6

135360710

-AHI1chr6

135788772

-
Frame-shiftENST00000367822ENST00000367800HBS1Lchr6

135360710

-AHI1chr6

135788772

-
Frame-shiftENST00000367822ENST00000457866HBS1Lchr6

135360710

-AHI1chr6

135788772

-
5CDS-intronENST00000367822ENST00000417892HBS1Lchr6

135360710

-AHI1chr6

135788772

-
5CDS-intronENST00000367822ENST00000327035HBS1Lchr6

135360710

-AHI1chr6

135788772

-
5CDS-intronENST00000367822ENST00000488690HBS1Lchr6

135360710

-AHI1chr6

135788772

-
5CDS-intronENST00000367822ENST00000367798HBS1Lchr6

135360710

-AHI1chr6

135788772

-
5CDS-intronENST00000367822ENST00000528103HBS1Lchr6

135360710

-AHI1chr6

135788772

-
5CDS-intronENST00000367822ENST00000534469HBS1Lchr6

135360710

-AHI1chr6

135788772

-
5CDS-intronENST00000367822ENST00000531527HBS1Lchr6

135360710

-AHI1chr6

135788772

-
Frame-shiftENST00000367820ENST00000367800HBS1Lchr6

135360710

-AHI1chr6

135788772

-
Frame-shiftENST00000367820ENST00000457866HBS1Lchr6

135360710

-AHI1chr6

135788772

-
5CDS-intronENST00000367820ENST00000417892HBS1Lchr6

135360710

-AHI1chr6

135788772

-
5CDS-intronENST00000367820ENST00000327035HBS1Lchr6

135360710

-AHI1chr6

135788772

-
5CDS-intronENST00000367820ENST00000488690HBS1Lchr6

135360710

-AHI1chr6

135788772

-
5CDS-intronENST00000367820ENST00000367798HBS1Lchr6

135360710

-AHI1chr6

135788772

-
5CDS-intronENST00000367820ENST00000528103HBS1Lchr6

135360710

-AHI1chr6

135788772

-
5CDS-intronENST00000367820ENST00000534469HBS1Lchr6

135360710

-AHI1chr6

135788772

-
5CDS-intronENST00000367820ENST00000531527HBS1Lchr6

135360710

-AHI1chr6

135788772

-
Frame-shiftENST00000525067ENST00000367800HBS1Lchr6

135360710

-AHI1chr6

135788772

-
Frame-shiftENST00000525067ENST00000457866HBS1Lchr6

135360710

-AHI1chr6

135788772

-
5CDS-intronENST00000525067ENST00000417892HBS1Lchr6

135360710

-AHI1chr6

135788772

-
5CDS-intronENST00000525067ENST00000327035HBS1Lchr6

135360710

-AHI1chr6

135788772

-
5CDS-intronENST00000525067ENST00000488690HBS1Lchr6

135360710

-AHI1chr6

135788772

-
5CDS-intronENST00000525067ENST00000367798HBS1Lchr6

135360710

-AHI1chr6

135788772

-
5CDS-intronENST00000525067ENST00000528103HBS1Lchr6

135360710

-AHI1chr6

135788772

-
5CDS-intronENST00000525067ENST00000534469HBS1Lchr6

135360710

-AHI1chr6

135788772

-
5CDS-intronENST00000525067ENST00000531527HBS1Lchr6

135360710

-AHI1chr6

135788772

-

check buttonORFfinder result based on the fusion transcript sequence of in-frame fusion genes.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandSeq length
(transcript)
BP loci
(transcript)
Predicted start
(transcript)
Predicted stop
(transcript)
Seq length
(amino acids)

check buttonDeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandNo-coding scoreCoding score

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Fusion Genomic Features for HBS1L-AHI1


check buttonFusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints.
HgeneHchrHbpHstrandTgeneTchrTbpTstrand1-pp (fusion gene breakpoint)

check buttonDistribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page.

check buttonDistribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page.

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Fusion Protein Features for HBS1L-AHI1


check button Go to

FGviewer for the breakpoints of :-:

.
- FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels.
FGviewer

check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
HBS1L

Q9Y450

AHI1

Q8N157

FUNCTION: Cotranslational quality control factor involved in the No-Go Decay (NGD) pathway (PubMed:21448132). In the presence of ABCE1 and PELO, is required for 48S complex formation from 80S ribosomes and dissociation of vacant 80S ribosomes (PubMed:21448132). Together with PELO and in presence of ABCE1, recognizes stalled ribosomes and promotes dissociation of elongation complexes assembled on non-stop mRNAs; this triggers endonucleolytic cleavage of the mRNA, a mechanism to release non-functional ribosomes and to degrade damaged mRNAs as part of the No-Go Decay (NGD) pathway (PubMed:21448132). {ECO:0000269|PubMed:21448132}.; FUNCTION: [Isoform 2]: Facilitates the association of the exosome complex with the SKI complex. {ECO:0000269|PubMed:28204585}.FUNCTION: Involved in vesicle trafficking and required for ciliogenesis, formation of primary non-motile cilium, and recruitment of RAB8A to the basal body of primary cilium. Component of the tectonic-like complex, a complex localized at the transition zone of primary cilia and acting as a barrier that prevents diffusion of transmembrane proteins between the cilia and plasma membranes. Involved in neuronal differentiation. As a positive modulator of classical Wnt signaling, may play a crucial role in ciliary signaling during cerebellum embryonic development (PubMed:21623382). {ECO:0000250|UniProtKB:Q8K3E5, ECO:0000269|PubMed:21623382}.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page


* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note


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Fusion Gene Sequence for HBS1L-AHI1


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones.

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Fusion Gene PPI Analysis for HBS1L-AHI1


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page.


check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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Related Drugs for HBS1L-AHI1


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.8 2021-05-08)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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Related Diseases for HBS1L-AHI1


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource
TgeneAHI1C1837713JOUBERT SYNDROME 37CTD_human;GENOMICS_ENGLAND;UNIPROT
TgeneAHI1C0004352Autistic Disorder1CTD_human
TgeneAHI1C0007760Cerebellar Diseases1CTD_human
TgeneAHI1C0020796Profound Mental Retardation1CTD_human
TgeneAHI1C0025363Mental Retardation, Psychosocial1CTD_human
TgeneAHI1C0035304Retinal Degeneration1CTD_human
TgeneAHI1C0036341Schizophrenia1CTD_human
TgeneAHI1C0152427Polydactyly1GENOMICS_ENGLAND
TgeneAHI1C0162538Immunoglobulin A deficiency (disorder)1CTD_human
TgeneAHI1C0431399Familial aplasia of the vermis1GENOMICS_ENGLAND;ORPHANET
TgeneAHI1C0917816Mental deficiency1CTD_human
TgeneAHI1C3553264JOUBERT SYNDROME 171GENOMICS_ENGLAND
TgeneAHI1C3714756Intellectual Disability1CTD_human
TgeneAHI1C4274118Joubert syndrome with ocular defect1ORPHANET
TgeneAHI1C4551568Joubert syndrome 11ORPHANET