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Fusion Gene Summary | |
Fusion Gene ORF analysis | |
Fusion Genomic Features | |
Fusion Protein Features | |
Fusion Gene Sequence | |
Fusion Gene PPI analysis | |
Related Drugs | |
Related Diseases |
Fusion gene:HERC4-RUFY2 (FusionGDB2 ID:36051) |
Fusion Gene Summary for HERC4-RUFY2 |
Fusion gene summary |
Fusion gene information | Fusion gene name: HERC4-RUFY2 | Fusion gene ID: 36051 | Hgene | Tgene | Gene symbol | HERC4 | RUFY2 | Gene ID | 26091 | 55680 |
Gene name | HECT and RLD domain containing E3 ubiquitin protein ligase 4 | RUN and FYVE domain containing 2 | |
Synonyms | - | RABIP4R|ZFYVE13 | |
Cytomap | 10q21.3 | 10q21.3 | |
Type of gene | protein-coding | protein-coding | |
Description | probable E3 ubiquitin-protein ligase HERC4HECT domain and RCC1-like domain-containing protein 4HECT-type E3 ubiquitin transferase HERC4hect domain and RLD 4 | RUN and FYVE domain-containing protein 2Run- and FYVE-domain containing proteinantigen MU-RMS-40.17rab4-interacting protein related | |
Modification date | 20200327 | 20200313 | |
UniProtAcc | Q5GLZ8 | . | |
Ensembl transtripts involved in fusion gene | ENST00000277817, ENST00000412272, ENST00000395198, ENST00000373700, ENST00000395187, ENST00000480158, ENST00000492996, | ENST00000388768, ENST00000602465, ENST00000265865, ENST00000399200, ENST00000454950, ENST00000472394, ENST00000342616, | |
Fusion gene scores | * DoF score | 12 X 13 X 6=936 | 9 X 9 X 5=405 |
# samples | 15 | 11 | |
** MAII score | log2(15/936*10)=-2.64154602908752 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(11/405*10)=-1.88041838424733 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
Context | PubMed: HERC4 [Title/Abstract] AND RUFY2 [Title/Abstract] AND fusion [Title/Abstract] | ||
Most frequent breakpoint | HERC4(69792535)-RUFY2(70105668), # samples:3 | ||
Anticipated loss of major functional domain due to fusion event. | HERC4-RUFY2 seems lost the major protein functional domain in Hgene partner, which is a essential gene due to the frame-shifted ORF. |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
Partner | Gene | GO ID | GO term | PubMed ID |
Fusion gene breakpoints across HERC4 (5'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
Fusion gene breakpoints across RUFY2 (3'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Source | Disease | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
ChimerDB4 | BRCA | TCGA-AR-A0U4-01A | HERC4 | chr10 | 69792535 | - | RUFY2 | chr10 | 70105668 | - |
ChimerDB4 | BRCA | TCGA-AR-A0U4 | HERC4 | chr10 | 69792534 | - | RUFY2 | chr10 | 70105668 | - |
ChimerDB4 | BRCA | TCGA-AR-A0U4-01A | HERC4 | chr10 | 69792535 | - | RUFY2 | chr10 | 70105668 | - |
ChimerDB4 | BRCA | TCGA-AR-A0U4-01A | HERC4 | chr10 | 69792535 | - | RUFY2 | chr10 | 70105668 | - |
ChimerDB4 | STAD | TCGA-BR-8373-01A | HERC4 | chr10 | 69785303 | - | RUFY2 | chr10 | 70136729 | - |
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Fusion Gene ORF analysis for HERC4-RUFY2 |
Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
In-frame | ENST00000277817 | ENST00000388768 | HERC4 | chr10 | 69792535 | - | RUFY2 | chr10 | 70105668 | - |
Frame-shift | ENST00000277817 | ENST00000602465 | HERC4 | chr10 | 69792535 | - | RUFY2 | chr10 | 70105668 | - |
Frame-shift | ENST00000277817 | ENST00000265865 | HERC4 | chr10 | 69792535 | - | RUFY2 | chr10 | 70105668 | - |
5CDS-intron | ENST00000277817 | ENST00000399200 | HERC4 | chr10 | 69792535 | - | RUFY2 | chr10 | 70105668 | - |
5CDS-intron | ENST00000277817 | ENST00000454950 | HERC4 | chr10 | 69792535 | - | RUFY2 | chr10 | 70105668 | - |
5CDS-intron | ENST00000277817 | ENST00000472394 | HERC4 | chr10 | 69792535 | - | RUFY2 | chr10 | 70105668 | - |
5CDS-intron | ENST00000277817 | ENST00000342616 | HERC4 | chr10 | 69792535 | - | RUFY2 | chr10 | 70105668 | - |
Frame-shift | ENST00000412272 | ENST00000388768 | HERC4 | chr10 | 69792535 | - | RUFY2 | chr10 | 70105668 | - |
Frame-shift | ENST00000412272 | ENST00000602465 | HERC4 | chr10 | 69792535 | - | RUFY2 | chr10 | 70105668 | - |
In-frame | ENST00000412272 | ENST00000265865 | HERC4 | chr10 | 69792535 | - | RUFY2 | chr10 | 70105668 | - |
5CDS-intron | ENST00000412272 | ENST00000399200 | HERC4 | chr10 | 69792535 | - | RUFY2 | chr10 | 70105668 | - |
5CDS-intron | ENST00000412272 | ENST00000454950 | HERC4 | chr10 | 69792535 | - | RUFY2 | chr10 | 70105668 | - |
5CDS-intron | ENST00000412272 | ENST00000472394 | HERC4 | chr10 | 69792535 | - | RUFY2 | chr10 | 70105668 | - |
5CDS-intron | ENST00000412272 | ENST00000342616 | HERC4 | chr10 | 69792535 | - | RUFY2 | chr10 | 70105668 | - |
Frame-shift | ENST00000395198 | ENST00000388768 | HERC4 | chr10 | 69792535 | - | RUFY2 | chr10 | 70105668 | - |
Frame-shift | ENST00000395198 | ENST00000602465 | HERC4 | chr10 | 69792535 | - | RUFY2 | chr10 | 70105668 | - |
In-frame | ENST00000395198 | ENST00000265865 | HERC4 | chr10 | 69792535 | - | RUFY2 | chr10 | 70105668 | - |
5CDS-intron | ENST00000395198 | ENST00000399200 | HERC4 | chr10 | 69792535 | - | RUFY2 | chr10 | 70105668 | - |
5CDS-intron | ENST00000395198 | ENST00000454950 | HERC4 | chr10 | 69792535 | - | RUFY2 | chr10 | 70105668 | - |
5CDS-intron | ENST00000395198 | ENST00000472394 | HERC4 | chr10 | 69792535 | - | RUFY2 | chr10 | 70105668 | - |
5CDS-intron | ENST00000395198 | ENST00000342616 | HERC4 | chr10 | 69792535 | - | RUFY2 | chr10 | 70105668 | - |
Frame-shift | ENST00000373700 | ENST00000388768 | HERC4 | chr10 | 69792535 | - | RUFY2 | chr10 | 70105668 | - |
Frame-shift | ENST00000373700 | ENST00000602465 | HERC4 | chr10 | 69792535 | - | RUFY2 | chr10 | 70105668 | - |
In-frame | ENST00000373700 | ENST00000265865 | HERC4 | chr10 | 69792535 | - | RUFY2 | chr10 | 70105668 | - |
5CDS-intron | ENST00000373700 | ENST00000399200 | HERC4 | chr10 | 69792535 | - | RUFY2 | chr10 | 70105668 | - |
5CDS-intron | ENST00000373700 | ENST00000454950 | HERC4 | chr10 | 69792535 | - | RUFY2 | chr10 | 70105668 | - |
5CDS-intron | ENST00000373700 | ENST00000472394 | HERC4 | chr10 | 69792535 | - | RUFY2 | chr10 | 70105668 | - |
5CDS-intron | ENST00000373700 | ENST00000342616 | HERC4 | chr10 | 69792535 | - | RUFY2 | chr10 | 70105668 | - |
3UTR-3CDS | ENST00000395187 | ENST00000388768 | HERC4 | chr10 | 69792535 | - | RUFY2 | chr10 | 70105668 | - |
3UTR-3CDS | ENST00000395187 | ENST00000602465 | HERC4 | chr10 | 69792535 | - | RUFY2 | chr10 | 70105668 | - |
3UTR-3CDS | ENST00000395187 | ENST00000265865 | HERC4 | chr10 | 69792535 | - | RUFY2 | chr10 | 70105668 | - |
3UTR-intron | ENST00000395187 | ENST00000399200 | HERC4 | chr10 | 69792535 | - | RUFY2 | chr10 | 70105668 | - |
3UTR-intron | ENST00000395187 | ENST00000454950 | HERC4 | chr10 | 69792535 | - | RUFY2 | chr10 | 70105668 | - |
3UTR-intron | ENST00000395187 | ENST00000472394 | HERC4 | chr10 | 69792535 | - | RUFY2 | chr10 | 70105668 | - |
3UTR-intron | ENST00000395187 | ENST00000342616 | HERC4 | chr10 | 69792535 | - | RUFY2 | chr10 | 70105668 | - |
intron-3CDS | ENST00000480158 | ENST00000388768 | HERC4 | chr10 | 69792535 | - | RUFY2 | chr10 | 70105668 | - |
intron-3CDS | ENST00000480158 | ENST00000602465 | HERC4 | chr10 | 69792535 | - | RUFY2 | chr10 | 70105668 | - |
intron-3CDS | ENST00000480158 | ENST00000265865 | HERC4 | chr10 | 69792535 | - | RUFY2 | chr10 | 70105668 | - |
intron-intron | ENST00000480158 | ENST00000399200 | HERC4 | chr10 | 69792535 | - | RUFY2 | chr10 | 70105668 | - |
intron-intron | ENST00000480158 | ENST00000454950 | HERC4 | chr10 | 69792535 | - | RUFY2 | chr10 | 70105668 | - |
intron-intron | ENST00000480158 | ENST00000472394 | HERC4 | chr10 | 69792535 | - | RUFY2 | chr10 | 70105668 | - |
intron-intron | ENST00000480158 | ENST00000342616 | HERC4 | chr10 | 69792535 | - | RUFY2 | chr10 | 70105668 | - |
intron-3CDS | ENST00000492996 | ENST00000388768 | HERC4 | chr10 | 69792535 | - | RUFY2 | chr10 | 70105668 | - |
intron-3CDS | ENST00000492996 | ENST00000602465 | HERC4 | chr10 | 69792535 | - | RUFY2 | chr10 | 70105668 | - |
intron-3CDS | ENST00000492996 | ENST00000265865 | HERC4 | chr10 | 69792535 | - | RUFY2 | chr10 | 70105668 | - |
intron-intron | ENST00000492996 | ENST00000399200 | HERC4 | chr10 | 69792535 | - | RUFY2 | chr10 | 70105668 | - |
intron-intron | ENST00000492996 | ENST00000454950 | HERC4 | chr10 | 69792535 | - | RUFY2 | chr10 | 70105668 | - |
intron-intron | ENST00000492996 | ENST00000472394 | HERC4 | chr10 | 69792535 | - | RUFY2 | chr10 | 70105668 | - |
intron-intron | ENST00000492996 | ENST00000342616 | HERC4 | chr10 | 69792535 | - | RUFY2 | chr10 | 70105668 | - |
In-frame | ENST00000277817 | ENST00000388768 | HERC4 | chr10 | 69792534 | - | RUFY2 | chr10 | 70105668 | - |
Frame-shift | ENST00000277817 | ENST00000602465 | HERC4 | chr10 | 69792534 | - | RUFY2 | chr10 | 70105668 | - |
Frame-shift | ENST00000277817 | ENST00000265865 | HERC4 | chr10 | 69792534 | - | RUFY2 | chr10 | 70105668 | - |
5CDS-intron | ENST00000277817 | ENST00000399200 | HERC4 | chr10 | 69792534 | - | RUFY2 | chr10 | 70105668 | - |
5CDS-intron | ENST00000277817 | ENST00000454950 | HERC4 | chr10 | 69792534 | - | RUFY2 | chr10 | 70105668 | - |
5CDS-intron | ENST00000277817 | ENST00000472394 | HERC4 | chr10 | 69792534 | - | RUFY2 | chr10 | 70105668 | - |
5CDS-intron | ENST00000277817 | ENST00000342616 | HERC4 | chr10 | 69792534 | - | RUFY2 | chr10 | 70105668 | - |
Frame-shift | ENST00000412272 | ENST00000388768 | HERC4 | chr10 | 69792534 | - | RUFY2 | chr10 | 70105668 | - |
Frame-shift | ENST00000412272 | ENST00000602465 | HERC4 | chr10 | 69792534 | - | RUFY2 | chr10 | 70105668 | - |
In-frame | ENST00000412272 | ENST00000265865 | HERC4 | chr10 | 69792534 | - | RUFY2 | chr10 | 70105668 | - |
5CDS-intron | ENST00000412272 | ENST00000399200 | HERC4 | chr10 | 69792534 | - | RUFY2 | chr10 | 70105668 | - |
5CDS-intron | ENST00000412272 | ENST00000454950 | HERC4 | chr10 | 69792534 | - | RUFY2 | chr10 | 70105668 | - |
5CDS-intron | ENST00000412272 | ENST00000472394 | HERC4 | chr10 | 69792534 | - | RUFY2 | chr10 | 70105668 | - |
5CDS-intron | ENST00000412272 | ENST00000342616 | HERC4 | chr10 | 69792534 | - | RUFY2 | chr10 | 70105668 | - |
Frame-shift | ENST00000395198 | ENST00000388768 | HERC4 | chr10 | 69792534 | - | RUFY2 | chr10 | 70105668 | - |
Frame-shift | ENST00000395198 | ENST00000602465 | HERC4 | chr10 | 69792534 | - | RUFY2 | chr10 | 70105668 | - |
In-frame | ENST00000395198 | ENST00000265865 | HERC4 | chr10 | 69792534 | - | RUFY2 | chr10 | 70105668 | - |
5CDS-intron | ENST00000395198 | ENST00000399200 | HERC4 | chr10 | 69792534 | - | RUFY2 | chr10 | 70105668 | - |
5CDS-intron | ENST00000395198 | ENST00000454950 | HERC4 | chr10 | 69792534 | - | RUFY2 | chr10 | 70105668 | - |
5CDS-intron | ENST00000395198 | ENST00000472394 | HERC4 | chr10 | 69792534 | - | RUFY2 | chr10 | 70105668 | - |
5CDS-intron | ENST00000395198 | ENST00000342616 | HERC4 | chr10 | 69792534 | - | RUFY2 | chr10 | 70105668 | - |
Frame-shift | ENST00000373700 | ENST00000388768 | HERC4 | chr10 | 69792534 | - | RUFY2 | chr10 | 70105668 | - |
Frame-shift | ENST00000373700 | ENST00000602465 | HERC4 | chr10 | 69792534 | - | RUFY2 | chr10 | 70105668 | - |
In-frame | ENST00000373700 | ENST00000265865 | HERC4 | chr10 | 69792534 | - | RUFY2 | chr10 | 70105668 | - |
5CDS-intron | ENST00000373700 | ENST00000399200 | HERC4 | chr10 | 69792534 | - | RUFY2 | chr10 | 70105668 | - |
5CDS-intron | ENST00000373700 | ENST00000454950 | HERC4 | chr10 | 69792534 | - | RUFY2 | chr10 | 70105668 | - |
5CDS-intron | ENST00000373700 | ENST00000472394 | HERC4 | chr10 | 69792534 | - | RUFY2 | chr10 | 70105668 | - |
5CDS-intron | ENST00000373700 | ENST00000342616 | HERC4 | chr10 | 69792534 | - | RUFY2 | chr10 | 70105668 | - |
3UTR-3CDS | ENST00000395187 | ENST00000388768 | HERC4 | chr10 | 69792534 | - | RUFY2 | chr10 | 70105668 | - |
3UTR-3CDS | ENST00000395187 | ENST00000602465 | HERC4 | chr10 | 69792534 | - | RUFY2 | chr10 | 70105668 | - |
3UTR-3CDS | ENST00000395187 | ENST00000265865 | HERC4 | chr10 | 69792534 | - | RUFY2 | chr10 | 70105668 | - |
3UTR-intron | ENST00000395187 | ENST00000399200 | HERC4 | chr10 | 69792534 | - | RUFY2 | chr10 | 70105668 | - |
3UTR-intron | ENST00000395187 | ENST00000454950 | HERC4 | chr10 | 69792534 | - | RUFY2 | chr10 | 70105668 | - |
3UTR-intron | ENST00000395187 | ENST00000472394 | HERC4 | chr10 | 69792534 | - | RUFY2 | chr10 | 70105668 | - |
3UTR-intron | ENST00000395187 | ENST00000342616 | HERC4 | chr10 | 69792534 | - | RUFY2 | chr10 | 70105668 | - |
intron-3CDS | ENST00000480158 | ENST00000388768 | HERC4 | chr10 | 69792534 | - | RUFY2 | chr10 | 70105668 | - |
intron-3CDS | ENST00000480158 | ENST00000602465 | HERC4 | chr10 | 69792534 | - | RUFY2 | chr10 | 70105668 | - |
intron-3CDS | ENST00000480158 | ENST00000265865 | HERC4 | chr10 | 69792534 | - | RUFY2 | chr10 | 70105668 | - |
intron-intron | ENST00000480158 | ENST00000399200 | HERC4 | chr10 | 69792534 | - | RUFY2 | chr10 | 70105668 | - |
intron-intron | ENST00000480158 | ENST00000454950 | HERC4 | chr10 | 69792534 | - | RUFY2 | chr10 | 70105668 | - |
intron-intron | ENST00000480158 | ENST00000472394 | HERC4 | chr10 | 69792534 | - | RUFY2 | chr10 | 70105668 | - |
intron-intron | ENST00000480158 | ENST00000342616 | HERC4 | chr10 | 69792534 | - | RUFY2 | chr10 | 70105668 | - |
intron-3CDS | ENST00000492996 | ENST00000388768 | HERC4 | chr10 | 69792534 | - | RUFY2 | chr10 | 70105668 | - |
intron-3CDS | ENST00000492996 | ENST00000602465 | HERC4 | chr10 | 69792534 | - | RUFY2 | chr10 | 70105668 | - |
intron-3CDS | ENST00000492996 | ENST00000265865 | HERC4 | chr10 | 69792534 | - | RUFY2 | chr10 | 70105668 | - |
intron-intron | ENST00000492996 | ENST00000399200 | HERC4 | chr10 | 69792534 | - | RUFY2 | chr10 | 70105668 | - |
intron-intron | ENST00000492996 | ENST00000454950 | HERC4 | chr10 | 69792534 | - | RUFY2 | chr10 | 70105668 | - |
intron-intron | ENST00000492996 | ENST00000472394 | HERC4 | chr10 | 69792534 | - | RUFY2 | chr10 | 70105668 | - |
intron-intron | ENST00000492996 | ENST00000342616 | HERC4 | chr10 | 69792534 | - | RUFY2 | chr10 | 70105668 | - |
In-frame | ENST00000277817 | ENST00000388768 | HERC4 | chr10 | 69785303 | - | RUFY2 | chr10 | 70136729 | - |
In-frame | ENST00000277817 | ENST00000602465 | HERC4 | chr10 | 69785303 | - | RUFY2 | chr10 | 70136729 | - |
5CDS-5UTR | ENST00000277817 | ENST00000265865 | HERC4 | chr10 | 69785303 | - | RUFY2 | chr10 | 70136729 | - |
5CDS-intron | ENST00000277817 | ENST00000399200 | HERC4 | chr10 | 69785303 | - | RUFY2 | chr10 | 70136729 | - |
5CDS-intron | ENST00000277817 | ENST00000454950 | HERC4 | chr10 | 69785303 | - | RUFY2 | chr10 | 70136729 | - |
5CDS-intron | ENST00000277817 | ENST00000472394 | HERC4 | chr10 | 69785303 | - | RUFY2 | chr10 | 70136729 | - |
5CDS-intron | ENST00000277817 | ENST00000342616 | HERC4 | chr10 | 69785303 | - | RUFY2 | chr10 | 70136729 | - |
Frame-shift | ENST00000412272 | ENST00000388768 | HERC4 | chr10 | 69785303 | - | RUFY2 | chr10 | 70136729 | - |
Frame-shift | ENST00000412272 | ENST00000602465 | HERC4 | chr10 | 69785303 | - | RUFY2 | chr10 | 70136729 | - |
5CDS-5UTR | ENST00000412272 | ENST00000265865 | HERC4 | chr10 | 69785303 | - | RUFY2 | chr10 | 70136729 | - |
5CDS-intron | ENST00000412272 | ENST00000399200 | HERC4 | chr10 | 69785303 | - | RUFY2 | chr10 | 70136729 | - |
5CDS-intron | ENST00000412272 | ENST00000454950 | HERC4 | chr10 | 69785303 | - | RUFY2 | chr10 | 70136729 | - |
5CDS-intron | ENST00000412272 | ENST00000472394 | HERC4 | chr10 | 69785303 | - | RUFY2 | chr10 | 70136729 | - |
5CDS-intron | ENST00000412272 | ENST00000342616 | HERC4 | chr10 | 69785303 | - | RUFY2 | chr10 | 70136729 | - |
Frame-shift | ENST00000395198 | ENST00000388768 | HERC4 | chr10 | 69785303 | - | RUFY2 | chr10 | 70136729 | - |
Frame-shift | ENST00000395198 | ENST00000602465 | HERC4 | chr10 | 69785303 | - | RUFY2 | chr10 | 70136729 | - |
5CDS-5UTR | ENST00000395198 | ENST00000265865 | HERC4 | chr10 | 69785303 | - | RUFY2 | chr10 | 70136729 | - |
5CDS-intron | ENST00000395198 | ENST00000399200 | HERC4 | chr10 | 69785303 | - | RUFY2 | chr10 | 70136729 | - |
5CDS-intron | ENST00000395198 | ENST00000454950 | HERC4 | chr10 | 69785303 | - | RUFY2 | chr10 | 70136729 | - |
5CDS-intron | ENST00000395198 | ENST00000472394 | HERC4 | chr10 | 69785303 | - | RUFY2 | chr10 | 70136729 | - |
5CDS-intron | ENST00000395198 | ENST00000342616 | HERC4 | chr10 | 69785303 | - | RUFY2 | chr10 | 70136729 | - |
Frame-shift | ENST00000373700 | ENST00000388768 | HERC4 | chr10 | 69785303 | - | RUFY2 | chr10 | 70136729 | - |
Frame-shift | ENST00000373700 | ENST00000602465 | HERC4 | chr10 | 69785303 | - | RUFY2 | chr10 | 70136729 | - |
5CDS-5UTR | ENST00000373700 | ENST00000265865 | HERC4 | chr10 | 69785303 | - | RUFY2 | chr10 | 70136729 | - |
5CDS-intron | ENST00000373700 | ENST00000399200 | HERC4 | chr10 | 69785303 | - | RUFY2 | chr10 | 70136729 | - |
5CDS-intron | ENST00000373700 | ENST00000454950 | HERC4 | chr10 | 69785303 | - | RUFY2 | chr10 | 70136729 | - |
5CDS-intron | ENST00000373700 | ENST00000472394 | HERC4 | chr10 | 69785303 | - | RUFY2 | chr10 | 70136729 | - |
5CDS-intron | ENST00000373700 | ENST00000342616 | HERC4 | chr10 | 69785303 | - | RUFY2 | chr10 | 70136729 | - |
3UTR-3CDS | ENST00000395187 | ENST00000388768 | HERC4 | chr10 | 69785303 | - | RUFY2 | chr10 | 70136729 | - |
3UTR-3CDS | ENST00000395187 | ENST00000602465 | HERC4 | chr10 | 69785303 | - | RUFY2 | chr10 | 70136729 | - |
3UTR-5UTR | ENST00000395187 | ENST00000265865 | HERC4 | chr10 | 69785303 | - | RUFY2 | chr10 | 70136729 | - |
3UTR-intron | ENST00000395187 | ENST00000399200 | HERC4 | chr10 | 69785303 | - | RUFY2 | chr10 | 70136729 | - |
3UTR-intron | ENST00000395187 | ENST00000454950 | HERC4 | chr10 | 69785303 | - | RUFY2 | chr10 | 70136729 | - |
3UTR-intron | ENST00000395187 | ENST00000472394 | HERC4 | chr10 | 69785303 | - | RUFY2 | chr10 | 70136729 | - |
3UTR-intron | ENST00000395187 | ENST00000342616 | HERC4 | chr10 | 69785303 | - | RUFY2 | chr10 | 70136729 | - |
intron-3CDS | ENST00000480158 | ENST00000388768 | HERC4 | chr10 | 69785303 | - | RUFY2 | chr10 | 70136729 | - |
intron-3CDS | ENST00000480158 | ENST00000602465 | HERC4 | chr10 | 69785303 | - | RUFY2 | chr10 | 70136729 | - |
intron-5UTR | ENST00000480158 | ENST00000265865 | HERC4 | chr10 | 69785303 | - | RUFY2 | chr10 | 70136729 | - |
intron-intron | ENST00000480158 | ENST00000399200 | HERC4 | chr10 | 69785303 | - | RUFY2 | chr10 | 70136729 | - |
intron-intron | ENST00000480158 | ENST00000454950 | HERC4 | chr10 | 69785303 | - | RUFY2 | chr10 | 70136729 | - |
intron-intron | ENST00000480158 | ENST00000472394 | HERC4 | chr10 | 69785303 | - | RUFY2 | chr10 | 70136729 | - |
intron-intron | ENST00000480158 | ENST00000342616 | HERC4 | chr10 | 69785303 | - | RUFY2 | chr10 | 70136729 | - |
intron-3CDS | ENST00000492996 | ENST00000388768 | HERC4 | chr10 | 69785303 | - | RUFY2 | chr10 | 70136729 | - |
intron-3CDS | ENST00000492996 | ENST00000602465 | HERC4 | chr10 | 69785303 | - | RUFY2 | chr10 | 70136729 | - |
intron-5UTR | ENST00000492996 | ENST00000265865 | HERC4 | chr10 | 69785303 | - | RUFY2 | chr10 | 70136729 | - |
intron-intron | ENST00000492996 | ENST00000399200 | HERC4 | chr10 | 69785303 | - | RUFY2 | chr10 | 70136729 | - |
intron-intron | ENST00000492996 | ENST00000454950 | HERC4 | chr10 | 69785303 | - | RUFY2 | chr10 | 70136729 | - |
intron-intron | ENST00000492996 | ENST00000472394 | HERC4 | chr10 | 69785303 | - | RUFY2 | chr10 | 70136729 | - |
intron-intron | ENST00000492996 | ENST00000342616 | HERC4 | chr10 | 69785303 | - | RUFY2 | chr10 | 70136729 | - |
ORFfinder result based on the fusion transcript sequence of in-frame fusion genes. |
Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | Seq length (transcript) | BP loci (transcript) | Predicted start (transcript) | Predicted stop (transcript) | Seq length (amino acids) |
ENST00000277817 | HERC4 | chr10 | 69792535 | - | ENST00000388768 | RUFY2 | chr10 | 70105668 | - | 3345 | 942 | 495 | 1085 | 196 |
ENST00000412272 | HERC4 | chr10 | 69792535 | - | ENST00000265865 | RUFY2 | chr10 | 70105668 | - | 1792 | 1025 | 248 | 1168 | 306 |
ENST00000395198 | HERC4 | chr10 | 69792535 | - | ENST00000265865 | RUFY2 | chr10 | 70105668 | - | 1792 | 1025 | 248 | 1168 | 306 |
ENST00000373700 | HERC4 | chr10 | 69792535 | - | ENST00000265865 | RUFY2 | chr10 | 70105668 | - | 1857 | 1090 | 313 | 1233 | 306 |
ENST00000277817 | HERC4 | chr10 | 69792534 | - | ENST00000388768 | RUFY2 | chr10 | 70105668 | - | 3345 | 942 | 495 | 1085 | 196 |
ENST00000412272 | HERC4 | chr10 | 69792534 | - | ENST00000265865 | RUFY2 | chr10 | 70105668 | - | 1792 | 1025 | 248 | 1168 | 306 |
ENST00000395198 | HERC4 | chr10 | 69792534 | - | ENST00000265865 | RUFY2 | chr10 | 70105668 | - | 1792 | 1025 | 248 | 1168 | 306 |
ENST00000373700 | HERC4 | chr10 | 69792534 | - | ENST00000265865 | RUFY2 | chr10 | 70105668 | - | 1857 | 1090 | 313 | 1233 | 306 |
ENST00000277817 | HERC4 | chr10 | 69785303 | - | ENST00000388768 | RUFY2 | chr10 | 70136729 | - | 3948 | 1073 | 495 | 1688 | 397 |
ENST00000277817 | HERC4 | chr10 | 69785303 | - | ENST00000602465 | RUFY2 | chr10 | 70136729 | - | 3630 | 1073 | 495 | 1688 | 397 |
DeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated. |
Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | No-coding score | Coding score |
ENST00000277817 | ENST00000388768 | HERC4 | chr10 | 69792535 | - | RUFY2 | chr10 | 70105668 | - | 0.003693829 | 0.9963062 |
ENST00000412272 | ENST00000265865 | HERC4 | chr10 | 69792535 | - | RUFY2 | chr10 | 70105668 | - | 0.000408836 | 0.9995912 |
ENST00000395198 | ENST00000265865 | HERC4 | chr10 | 69792535 | - | RUFY2 | chr10 | 70105668 | - | 0.000408836 | 0.9995912 |
ENST00000373700 | ENST00000265865 | HERC4 | chr10 | 69792535 | - | RUFY2 | chr10 | 70105668 | - | 0.000420877 | 0.99957913 |
ENST00000277817 | ENST00000388768 | HERC4 | chr10 | 69792534 | - | RUFY2 | chr10 | 70105668 | - | 0.003693829 | 0.9963062 |
ENST00000412272 | ENST00000265865 | HERC4 | chr10 | 69792534 | - | RUFY2 | chr10 | 70105668 | - | 0.000408836 | 0.9995912 |
ENST00000395198 | ENST00000265865 | HERC4 | chr10 | 69792534 | - | RUFY2 | chr10 | 70105668 | - | 0.000408836 | 0.9995912 |
ENST00000373700 | ENST00000265865 | HERC4 | chr10 | 69792534 | - | RUFY2 | chr10 | 70105668 | - | 0.000420877 | 0.99957913 |
ENST00000277817 | ENST00000388768 | HERC4 | chr10 | 69785303 | - | RUFY2 | chr10 | 70136729 | - | 0.000273217 | 0.9997267 |
ENST00000277817 | ENST00000602465 | HERC4 | chr10 | 69785303 | - | RUFY2 | chr10 | 70136729 | - | 0.000333057 | 0.9996669 |
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Fusion Genomic Features for HERC4-RUFY2 |
FusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints. |
Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | 1-p | p (fusion gene breakpoint) |
Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page. |
Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page. |
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Fusion Protein Features for HERC4-RUFY2 |
Go to FGviewer for the breakpoints of chr10:69792535-chr10:70105668 - FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels. |
Main function of each fusion partner protein. (from UniProt) |
Hgene | Tgene |
HERC4 | . |
FUNCTION: Probable E3 ubiquitin-protein ligase involved in either protein trafficking or in the distribution of cellular structures. Required for spermatozoon maturation and fertility, and for the removal of the cytoplasmic droplet of the spermatozoon. E3 ubiquitin-protein ligases accept ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfer it to targeted substrates. {ECO:0000250|UniProtKB:Q6PAV2}. | FUNCTION: Might normally function as a transcriptional repressor. EWS-fusion-proteins (EFPS) may play a role in the tumorigenic process. They may disturb gene expression by mimicking, or interfering with the normal function of CTD-POLII within the transcription initiation complex. They may also contribute to an aberrant activation of the fusion protein target genes. |
Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | HERC4 | chr10:69785303 | chr10:70136729 | ENST00000395187 | - | 7 | 24 | 730_1057 | 249.33333333333334 | 123.66666666666667 | Domain | HECT |
Hgene | HERC4 | chr10:69792534 | chr10:70105668 | ENST00000395187 | - | 6 | 24 | 730_1057 | 205.66666666666666 | 123.66666666666667 | Domain | HECT |
Hgene | HERC4 | chr10:69792535 | chr10:70105668 | ENST00000395187 | - | 6 | 24 | 730_1057 | 205.66666666666666 | 123.66666666666667 | Domain | HECT |
Hgene | HERC4 | chr10:69785303 | chr10:70136729 | ENST00000277817 | - | 5 | 23 | 102_154 | 192.66666666666666 | 948.0 | Repeat | Note=RCC1 3 |
Hgene | HERC4 | chr10:69785303 | chr10:70136729 | ENST00000277817 | - | 5 | 23 | 1_51 | 192.66666666666666 | 948.0 | Repeat | Note=RCC1 1 |
Hgene | HERC4 | chr10:69785303 | chr10:70136729 | ENST00000277817 | - | 5 | 23 | 52_101 | 192.66666666666666 | 948.0 | Repeat | Note=RCC1 2 |
Hgene | HERC4 | chr10:69785303 | chr10:70136729 | ENST00000373700 | - | 8 | 25 | 102_154 | 302.6666666666667 | 1050.0 | Repeat | Note=RCC1 3 |
Hgene | HERC4 | chr10:69785303 | chr10:70136729 | ENST00000373700 | - | 8 | 25 | 156_207 | 302.6666666666667 | 1050.0 | Repeat | Note=RCC1 4 |
Hgene | HERC4 | chr10:69785303 | chr10:70136729 | ENST00000373700 | - | 8 | 25 | 1_51 | 302.6666666666667 | 1050.0 | Repeat | Note=RCC1 1 |
Hgene | HERC4 | chr10:69785303 | chr10:70136729 | ENST00000373700 | - | 8 | 25 | 208_259 | 302.6666666666667 | 1050.0 | Repeat | Note=RCC1 5 |
Hgene | HERC4 | chr10:69785303 | chr10:70136729 | ENST00000373700 | - | 8 | 25 | 52_101 | 302.6666666666667 | 1050.0 | Repeat | Note=RCC1 2 |
Hgene | HERC4 | chr10:69785303 | chr10:70136729 | ENST00000395187 | - | 7 | 24 | 102_154 | 249.33333333333334 | 123.66666666666667 | Repeat | Note=RCC1 3 |
Hgene | HERC4 | chr10:69785303 | chr10:70136729 | ENST00000395187 | - | 7 | 24 | 156_207 | 249.33333333333334 | 123.66666666666667 | Repeat | Note=RCC1 4 |
Hgene | HERC4 | chr10:69785303 | chr10:70136729 | ENST00000395187 | - | 7 | 24 | 1_51 | 249.33333333333334 | 123.66666666666667 | Repeat | Note=RCC1 1 |
Hgene | HERC4 | chr10:69785303 | chr10:70136729 | ENST00000395187 | - | 7 | 24 | 208_259 | 249.33333333333334 | 123.66666666666667 | Repeat | Note=RCC1 5 |
Hgene | HERC4 | chr10:69785303 | chr10:70136729 | ENST00000395187 | - | 7 | 24 | 261_311 | 249.33333333333334 | 123.66666666666667 | Repeat | Note=RCC1 6 |
Hgene | HERC4 | chr10:69785303 | chr10:70136729 | ENST00000395187 | - | 7 | 24 | 313_368 | 249.33333333333334 | 123.66666666666667 | Repeat | Note=RCC1 7 |
Hgene | HERC4 | chr10:69785303 | chr10:70136729 | ENST00000395187 | - | 7 | 24 | 52_101 | 249.33333333333334 | 123.66666666666667 | Repeat | Note=RCC1 2 |
Hgene | HERC4 | chr10:69785303 | chr10:70136729 | ENST00000395198 | - | 8 | 26 | 102_154 | 302.6666666666667 | 1058.0 | Repeat | Note=RCC1 3 |
Hgene | HERC4 | chr10:69785303 | chr10:70136729 | ENST00000395198 | - | 8 | 26 | 156_207 | 302.6666666666667 | 1058.0 | Repeat | Note=RCC1 4 |
Hgene | HERC4 | chr10:69785303 | chr10:70136729 | ENST00000395198 | - | 8 | 26 | 1_51 | 302.6666666666667 | 1058.0 | Repeat | Note=RCC1 1 |
Hgene | HERC4 | chr10:69785303 | chr10:70136729 | ENST00000395198 | - | 8 | 26 | 208_259 | 302.6666666666667 | 1058.0 | Repeat | Note=RCC1 5 |
Hgene | HERC4 | chr10:69785303 | chr10:70136729 | ENST00000395198 | - | 8 | 26 | 52_101 | 302.6666666666667 | 1058.0 | Repeat | Note=RCC1 2 |
Hgene | HERC4 | chr10:69785303 | chr10:70136729 | ENST00000412272 | - | 8 | 24 | 102_154 | 302.6666666666667 | 980.0 | Repeat | Note=RCC1 3 |
Hgene | HERC4 | chr10:69785303 | chr10:70136729 | ENST00000412272 | - | 8 | 24 | 156_207 | 302.6666666666667 | 980.0 | Repeat | Note=RCC1 4 |
Hgene | HERC4 | chr10:69785303 | chr10:70136729 | ENST00000412272 | - | 8 | 24 | 1_51 | 302.6666666666667 | 980.0 | Repeat | Note=RCC1 1 |
Hgene | HERC4 | chr10:69785303 | chr10:70136729 | ENST00000412272 | - | 8 | 24 | 208_259 | 302.6666666666667 | 980.0 | Repeat | Note=RCC1 5 |
Hgene | HERC4 | chr10:69785303 | chr10:70136729 | ENST00000412272 | - | 8 | 24 | 52_101 | 302.6666666666667 | 980.0 | Repeat | Note=RCC1 2 |
Hgene | HERC4 | chr10:69792534 | chr10:70105668 | ENST00000277817 | - | 4 | 23 | 1_51 | 149.0 | 948.0 | Repeat | Note=RCC1 1 |
Hgene | HERC4 | chr10:69792534 | chr10:70105668 | ENST00000277817 | - | 4 | 23 | 52_101 | 149.0 | 948.0 | Repeat | Note=RCC1 2 |
Hgene | HERC4 | chr10:69792534 | chr10:70105668 | ENST00000373700 | - | 7 | 25 | 102_154 | 259.0 | 1050.0 | Repeat | Note=RCC1 3 |
Hgene | HERC4 | chr10:69792534 | chr10:70105668 | ENST00000373700 | - | 7 | 25 | 156_207 | 259.0 | 1050.0 | Repeat | Note=RCC1 4 |
Hgene | HERC4 | chr10:69792534 | chr10:70105668 | ENST00000373700 | - | 7 | 25 | 1_51 | 259.0 | 1050.0 | Repeat | Note=RCC1 1 |
Hgene | HERC4 | chr10:69792534 | chr10:70105668 | ENST00000373700 | - | 7 | 25 | 208_259 | 259.0 | 1050.0 | Repeat | Note=RCC1 5 |
Hgene | HERC4 | chr10:69792534 | chr10:70105668 | ENST00000373700 | - | 7 | 25 | 52_101 | 259.0 | 1050.0 | Repeat | Note=RCC1 2 |
Hgene | HERC4 | chr10:69792534 | chr10:70105668 | ENST00000395187 | - | 6 | 24 | 102_154 | 205.66666666666666 | 123.66666666666667 | Repeat | Note=RCC1 3 |
Hgene | HERC4 | chr10:69792534 | chr10:70105668 | ENST00000395187 | - | 6 | 24 | 156_207 | 205.66666666666666 | 123.66666666666667 | Repeat | Note=RCC1 4 |
Hgene | HERC4 | chr10:69792534 | chr10:70105668 | ENST00000395187 | - | 6 | 24 | 1_51 | 205.66666666666666 | 123.66666666666667 | Repeat | Note=RCC1 1 |
Hgene | HERC4 | chr10:69792534 | chr10:70105668 | ENST00000395187 | - | 6 | 24 | 208_259 | 205.66666666666666 | 123.66666666666667 | Repeat | Note=RCC1 5 |
Hgene | HERC4 | chr10:69792534 | chr10:70105668 | ENST00000395187 | - | 6 | 24 | 261_311 | 205.66666666666666 | 123.66666666666667 | Repeat | Note=RCC1 6 |
Hgene | HERC4 | chr10:69792534 | chr10:70105668 | ENST00000395187 | - | 6 | 24 | 313_368 | 205.66666666666666 | 123.66666666666667 | Repeat | Note=RCC1 7 |
Hgene | HERC4 | chr10:69792534 | chr10:70105668 | ENST00000395187 | - | 6 | 24 | 52_101 | 205.66666666666666 | 123.66666666666667 | Repeat | Note=RCC1 2 |
Hgene | HERC4 | chr10:69792534 | chr10:70105668 | ENST00000395198 | - | 7 | 26 | 102_154 | 259.0 | 1058.0 | Repeat | Note=RCC1 3 |
Hgene | HERC4 | chr10:69792534 | chr10:70105668 | ENST00000395198 | - | 7 | 26 | 156_207 | 259.0 | 1058.0 | Repeat | Note=RCC1 4 |
Hgene | HERC4 | chr10:69792534 | chr10:70105668 | ENST00000395198 | - | 7 | 26 | 1_51 | 259.0 | 1058.0 | Repeat | Note=RCC1 1 |
Hgene | HERC4 | chr10:69792534 | chr10:70105668 | ENST00000395198 | - | 7 | 26 | 208_259 | 259.0 | 1058.0 | Repeat | Note=RCC1 5 |
Hgene | HERC4 | chr10:69792534 | chr10:70105668 | ENST00000395198 | - | 7 | 26 | 52_101 | 259.0 | 1058.0 | Repeat | Note=RCC1 2 |
Hgene | HERC4 | chr10:69792534 | chr10:70105668 | ENST00000412272 | - | 7 | 24 | 102_154 | 259.0 | 980.0 | Repeat | Note=RCC1 3 |
Hgene | HERC4 | chr10:69792534 | chr10:70105668 | ENST00000412272 | - | 7 | 24 | 156_207 | 259.0 | 980.0 | Repeat | Note=RCC1 4 |
Hgene | HERC4 | chr10:69792534 | chr10:70105668 | ENST00000412272 | - | 7 | 24 | 1_51 | 259.0 | 980.0 | Repeat | Note=RCC1 1 |
Hgene | HERC4 | chr10:69792534 | chr10:70105668 | ENST00000412272 | - | 7 | 24 | 208_259 | 259.0 | 980.0 | Repeat | Note=RCC1 5 |
Hgene | HERC4 | chr10:69792534 | chr10:70105668 | ENST00000412272 | - | 7 | 24 | 52_101 | 259.0 | 980.0 | Repeat | Note=RCC1 2 |
Hgene | HERC4 | chr10:69792535 | chr10:70105668 | ENST00000277817 | - | 4 | 23 | 1_51 | 149.0 | 948.0 | Repeat | Note=RCC1 1 |
Hgene | HERC4 | chr10:69792535 | chr10:70105668 | ENST00000277817 | - | 4 | 23 | 52_101 | 149.0 | 948.0 | Repeat | Note=RCC1 2 |
Hgene | HERC4 | chr10:69792535 | chr10:70105668 | ENST00000373700 | - | 7 | 25 | 102_154 | 259.0 | 1050.0 | Repeat | Note=RCC1 3 |
Hgene | HERC4 | chr10:69792535 | chr10:70105668 | ENST00000373700 | - | 7 | 25 | 156_207 | 259.0 | 1050.0 | Repeat | Note=RCC1 4 |
Hgene | HERC4 | chr10:69792535 | chr10:70105668 | ENST00000373700 | - | 7 | 25 | 1_51 | 259.0 | 1050.0 | Repeat | Note=RCC1 1 |
Hgene | HERC4 | chr10:69792535 | chr10:70105668 | ENST00000373700 | - | 7 | 25 | 208_259 | 259.0 | 1050.0 | Repeat | Note=RCC1 5 |
Hgene | HERC4 | chr10:69792535 | chr10:70105668 | ENST00000373700 | - | 7 | 25 | 52_101 | 259.0 | 1050.0 | Repeat | Note=RCC1 2 |
Hgene | HERC4 | chr10:69792535 | chr10:70105668 | ENST00000395187 | - | 6 | 24 | 102_154 | 205.66666666666666 | 123.66666666666667 | Repeat | Note=RCC1 3 |
Hgene | HERC4 | chr10:69792535 | chr10:70105668 | ENST00000395187 | - | 6 | 24 | 156_207 | 205.66666666666666 | 123.66666666666667 | Repeat | Note=RCC1 4 |
Hgene | HERC4 | chr10:69792535 | chr10:70105668 | ENST00000395187 | - | 6 | 24 | 1_51 | 205.66666666666666 | 123.66666666666667 | Repeat | Note=RCC1 1 |
Hgene | HERC4 | chr10:69792535 | chr10:70105668 | ENST00000395187 | - | 6 | 24 | 208_259 | 205.66666666666666 | 123.66666666666667 | Repeat | Note=RCC1 5 |
Hgene | HERC4 | chr10:69792535 | chr10:70105668 | ENST00000395187 | - | 6 | 24 | 261_311 | 205.66666666666666 | 123.66666666666667 | Repeat | Note=RCC1 6 |
Hgene | HERC4 | chr10:69792535 | chr10:70105668 | ENST00000395187 | - | 6 | 24 | 313_368 | 205.66666666666666 | 123.66666666666667 | Repeat | Note=RCC1 7 |
Hgene | HERC4 | chr10:69792535 | chr10:70105668 | ENST00000395187 | - | 6 | 24 | 52_101 | 205.66666666666666 | 123.66666666666667 | Repeat | Note=RCC1 2 |
Hgene | HERC4 | chr10:69792535 | chr10:70105668 | ENST00000395198 | - | 7 | 26 | 102_154 | 259.0 | 1058.0 | Repeat | Note=RCC1 3 |
Hgene | HERC4 | chr10:69792535 | chr10:70105668 | ENST00000395198 | - | 7 | 26 | 156_207 | 259.0 | 1058.0 | Repeat | Note=RCC1 4 |
Hgene | HERC4 | chr10:69792535 | chr10:70105668 | ENST00000395198 | - | 7 | 26 | 1_51 | 259.0 | 1058.0 | Repeat | Note=RCC1 1 |
Hgene | HERC4 | chr10:69792535 | chr10:70105668 | ENST00000395198 | - | 7 | 26 | 208_259 | 259.0 | 1058.0 | Repeat | Note=RCC1 5 |
Hgene | HERC4 | chr10:69792535 | chr10:70105668 | ENST00000395198 | - | 7 | 26 | 52_101 | 259.0 | 1058.0 | Repeat | Note=RCC1 2 |
Hgene | HERC4 | chr10:69792535 | chr10:70105668 | ENST00000412272 | - | 7 | 24 | 102_154 | 259.0 | 980.0 | Repeat | Note=RCC1 3 |
Hgene | HERC4 | chr10:69792535 | chr10:70105668 | ENST00000412272 | - | 7 | 24 | 156_207 | 259.0 | 980.0 | Repeat | Note=RCC1 4 |
Hgene | HERC4 | chr10:69792535 | chr10:70105668 | ENST00000412272 | - | 7 | 24 | 1_51 | 259.0 | 980.0 | Repeat | Note=RCC1 1 |
Hgene | HERC4 | chr10:69792535 | chr10:70105668 | ENST00000412272 | - | 7 | 24 | 208_259 | 259.0 | 980.0 | Repeat | Note=RCC1 5 |
Hgene | HERC4 | chr10:69792535 | chr10:70105668 | ENST00000412272 | - | 7 | 24 | 52_101 | 259.0 | 980.0 | Repeat | Note=RCC1 2 |
Tgene | RUFY2 | chr10:69785303 | chr10:70136729 | ENST00000399200 | 0 | 12 | 210_534 | 0 | 404.0 | Coiled coil | Ontology_term=ECO:0000255 | |
Tgene | RUFY2 | chr10:69792534 | chr10:70105668 | ENST00000399200 | 0 | 12 | 210_534 | 0 | 404.0 | Coiled coil | Ontology_term=ECO:0000255 | |
Tgene | RUFY2 | chr10:69792535 | chr10:70105668 | ENST00000399200 | 0 | 12 | 210_534 | 0 | 404.0 | Coiled coil | Ontology_term=ECO:0000255 | |
Tgene | RUFY2 | chr10:69785303 | chr10:70136729 | ENST00000399200 | 0 | 12 | 37_169 | 0 | 404.0 | Domain | RUN | |
Tgene | RUFY2 | chr10:69792534 | chr10:70105668 | ENST00000399200 | 0 | 12 | 37_169 | 0 | 404.0 | Domain | RUN | |
Tgene | RUFY2 | chr10:69792535 | chr10:70105668 | ENST00000399200 | 0 | 12 | 37_169 | 0 | 404.0 | Domain | RUN | |
Tgene | RUFY2 | chr10:69785303 | chr10:70136729 | ENST00000388768 | 11 | 18 | 540_598 | 436.6666666666667 | 642.0 | Zinc finger | FYVE-type | |
Tgene | RUFY2 | chr10:69785303 | chr10:70136729 | ENST00000399200 | 0 | 12 | 540_598 | 0 | 404.0 | Zinc finger | FYVE-type | |
Tgene | RUFY2 | chr10:69785303 | chr10:70136729 | ENST00000602465 | 11 | 18 | 540_598 | 401.6666666666667 | 607.0 | Zinc finger | FYVE-type | |
Tgene | RUFY2 | chr10:69792534 | chr10:70105668 | ENST00000399200 | 0 | 12 | 540_598 | 0 | 404.0 | Zinc finger | FYVE-type | |
Tgene | RUFY2 | chr10:69792535 | chr10:70105668 | ENST00000399200 | 0 | 12 | 540_598 | 0 | 404.0 | Zinc finger | FYVE-type |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | HERC4 | chr10:69785303 | chr10:70136729 | ENST00000277817 | - | 5 | 23 | 730_1057 | 192.66666666666666 | 948.0 | Domain | HECT |
Hgene | HERC4 | chr10:69785303 | chr10:70136729 | ENST00000373700 | - | 8 | 25 | 730_1057 | 302.6666666666667 | 1050.0 | Domain | HECT |
Hgene | HERC4 | chr10:69785303 | chr10:70136729 | ENST00000395198 | - | 8 | 26 | 730_1057 | 302.6666666666667 | 1058.0 | Domain | HECT |
Hgene | HERC4 | chr10:69785303 | chr10:70136729 | ENST00000412272 | - | 8 | 24 | 730_1057 | 302.6666666666667 | 980.0 | Domain | HECT |
Hgene | HERC4 | chr10:69785303 | chr10:70136729 | ENST00000492996 | - | 1 | 4 | 730_1057 | 0 | 111.0 | Domain | HECT |
Hgene | HERC4 | chr10:69792534 | chr10:70105668 | ENST00000277817 | - | 4 | 23 | 730_1057 | 149.0 | 948.0 | Domain | HECT |
Hgene | HERC4 | chr10:69792534 | chr10:70105668 | ENST00000373700 | - | 7 | 25 | 730_1057 | 259.0 | 1050.0 | Domain | HECT |
Hgene | HERC4 | chr10:69792534 | chr10:70105668 | ENST00000395198 | - | 7 | 26 | 730_1057 | 259.0 | 1058.0 | Domain | HECT |
Hgene | HERC4 | chr10:69792534 | chr10:70105668 | ENST00000412272 | - | 7 | 24 | 730_1057 | 259.0 | 980.0 | Domain | HECT |
Hgene | HERC4 | chr10:69792534 | chr10:70105668 | ENST00000492996 | - | 1 | 4 | 730_1057 | 0 | 111.0 | Domain | HECT |
Hgene | HERC4 | chr10:69792535 | chr10:70105668 | ENST00000277817 | - | 4 | 23 | 730_1057 | 149.0 | 948.0 | Domain | HECT |
Hgene | HERC4 | chr10:69792535 | chr10:70105668 | ENST00000373700 | - | 7 | 25 | 730_1057 | 259.0 | 1050.0 | Domain | HECT |
Hgene | HERC4 | chr10:69792535 | chr10:70105668 | ENST00000395198 | - | 7 | 26 | 730_1057 | 259.0 | 1058.0 | Domain | HECT |
Hgene | HERC4 | chr10:69792535 | chr10:70105668 | ENST00000412272 | - | 7 | 24 | 730_1057 | 259.0 | 980.0 | Domain | HECT |
Hgene | HERC4 | chr10:69792535 | chr10:70105668 | ENST00000492996 | - | 1 | 4 | 730_1057 | 0 | 111.0 | Domain | HECT |
Hgene | HERC4 | chr10:69785303 | chr10:70136729 | ENST00000277817 | - | 5 | 23 | 156_207 | 192.66666666666666 | 948.0 | Repeat | Note=RCC1 4 |
Hgene | HERC4 | chr10:69785303 | chr10:70136729 | ENST00000277817 | - | 5 | 23 | 208_259 | 192.66666666666666 | 948.0 | Repeat | Note=RCC1 5 |
Hgene | HERC4 | chr10:69785303 | chr10:70136729 | ENST00000277817 | - | 5 | 23 | 261_311 | 192.66666666666666 | 948.0 | Repeat | Note=RCC1 6 |
Hgene | HERC4 | chr10:69785303 | chr10:70136729 | ENST00000277817 | - | 5 | 23 | 313_368 | 192.66666666666666 | 948.0 | Repeat | Note=RCC1 7 |
Hgene | HERC4 | chr10:69785303 | chr10:70136729 | ENST00000373700 | - | 8 | 25 | 261_311 | 302.6666666666667 | 1050.0 | Repeat | Note=RCC1 6 |
Hgene | HERC4 | chr10:69785303 | chr10:70136729 | ENST00000373700 | - | 8 | 25 | 313_368 | 302.6666666666667 | 1050.0 | Repeat | Note=RCC1 7 |
Hgene | HERC4 | chr10:69785303 | chr10:70136729 | ENST00000395198 | - | 8 | 26 | 261_311 | 302.6666666666667 | 1058.0 | Repeat | Note=RCC1 6 |
Hgene | HERC4 | chr10:69785303 | chr10:70136729 | ENST00000395198 | - | 8 | 26 | 313_368 | 302.6666666666667 | 1058.0 | Repeat | Note=RCC1 7 |
Hgene | HERC4 | chr10:69785303 | chr10:70136729 | ENST00000412272 | - | 8 | 24 | 261_311 | 302.6666666666667 | 980.0 | Repeat | Note=RCC1 6 |
Hgene | HERC4 | chr10:69785303 | chr10:70136729 | ENST00000412272 | - | 8 | 24 | 313_368 | 302.6666666666667 | 980.0 | Repeat | Note=RCC1 7 |
Hgene | HERC4 | chr10:69785303 | chr10:70136729 | ENST00000492996 | - | 1 | 4 | 102_154 | 0 | 111.0 | Repeat | Note=RCC1 3 |
Hgene | HERC4 | chr10:69785303 | chr10:70136729 | ENST00000492996 | - | 1 | 4 | 156_207 | 0 | 111.0 | Repeat | Note=RCC1 4 |
Hgene | HERC4 | chr10:69785303 | chr10:70136729 | ENST00000492996 | - | 1 | 4 | 1_51 | 0 | 111.0 | Repeat | Note=RCC1 1 |
Hgene | HERC4 | chr10:69785303 | chr10:70136729 | ENST00000492996 | - | 1 | 4 | 208_259 | 0 | 111.0 | Repeat | Note=RCC1 5 |
Hgene | HERC4 | chr10:69785303 | chr10:70136729 | ENST00000492996 | - | 1 | 4 | 261_311 | 0 | 111.0 | Repeat | Note=RCC1 6 |
Hgene | HERC4 | chr10:69785303 | chr10:70136729 | ENST00000492996 | - | 1 | 4 | 313_368 | 0 | 111.0 | Repeat | Note=RCC1 7 |
Hgene | HERC4 | chr10:69785303 | chr10:70136729 | ENST00000492996 | - | 1 | 4 | 52_101 | 0 | 111.0 | Repeat | Note=RCC1 2 |
Hgene | HERC4 | chr10:69792534 | chr10:70105668 | ENST00000277817 | - | 4 | 23 | 102_154 | 149.0 | 948.0 | Repeat | Note=RCC1 3 |
Hgene | HERC4 | chr10:69792534 | chr10:70105668 | ENST00000277817 | - | 4 | 23 | 156_207 | 149.0 | 948.0 | Repeat | Note=RCC1 4 |
Hgene | HERC4 | chr10:69792534 | chr10:70105668 | ENST00000277817 | - | 4 | 23 | 208_259 | 149.0 | 948.0 | Repeat | Note=RCC1 5 |
Hgene | HERC4 | chr10:69792534 | chr10:70105668 | ENST00000277817 | - | 4 | 23 | 261_311 | 149.0 | 948.0 | Repeat | Note=RCC1 6 |
Hgene | HERC4 | chr10:69792534 | chr10:70105668 | ENST00000277817 | - | 4 | 23 | 313_368 | 149.0 | 948.0 | Repeat | Note=RCC1 7 |
Hgene | HERC4 | chr10:69792534 | chr10:70105668 | ENST00000373700 | - | 7 | 25 | 261_311 | 259.0 | 1050.0 | Repeat | Note=RCC1 6 |
Hgene | HERC4 | chr10:69792534 | chr10:70105668 | ENST00000373700 | - | 7 | 25 | 313_368 | 259.0 | 1050.0 | Repeat | Note=RCC1 7 |
Hgene | HERC4 | chr10:69792534 | chr10:70105668 | ENST00000395198 | - | 7 | 26 | 261_311 | 259.0 | 1058.0 | Repeat | Note=RCC1 6 |
Hgene | HERC4 | chr10:69792534 | chr10:70105668 | ENST00000395198 | - | 7 | 26 | 313_368 | 259.0 | 1058.0 | Repeat | Note=RCC1 7 |
Hgene | HERC4 | chr10:69792534 | chr10:70105668 | ENST00000412272 | - | 7 | 24 | 261_311 | 259.0 | 980.0 | Repeat | Note=RCC1 6 |
Hgene | HERC4 | chr10:69792534 | chr10:70105668 | ENST00000412272 | - | 7 | 24 | 313_368 | 259.0 | 980.0 | Repeat | Note=RCC1 7 |
Hgene | HERC4 | chr10:69792534 | chr10:70105668 | ENST00000492996 | - | 1 | 4 | 102_154 | 0 | 111.0 | Repeat | Note=RCC1 3 |
Hgene | HERC4 | chr10:69792534 | chr10:70105668 | ENST00000492996 | - | 1 | 4 | 156_207 | 0 | 111.0 | Repeat | Note=RCC1 4 |
Hgene | HERC4 | chr10:69792534 | chr10:70105668 | ENST00000492996 | - | 1 | 4 | 1_51 | 0 | 111.0 | Repeat | Note=RCC1 1 |
Hgene | HERC4 | chr10:69792534 | chr10:70105668 | ENST00000492996 | - | 1 | 4 | 208_259 | 0 | 111.0 | Repeat | Note=RCC1 5 |
Hgene | HERC4 | chr10:69792534 | chr10:70105668 | ENST00000492996 | - | 1 | 4 | 261_311 | 0 | 111.0 | Repeat | Note=RCC1 6 |
Hgene | HERC4 | chr10:69792534 | chr10:70105668 | ENST00000492996 | - | 1 | 4 | 313_368 | 0 | 111.0 | Repeat | Note=RCC1 7 |
Hgene | HERC4 | chr10:69792534 | chr10:70105668 | ENST00000492996 | - | 1 | 4 | 52_101 | 0 | 111.0 | Repeat | Note=RCC1 2 |
Hgene | HERC4 | chr10:69792535 | chr10:70105668 | ENST00000277817 | - | 4 | 23 | 102_154 | 149.0 | 948.0 | Repeat | Note=RCC1 3 |
Hgene | HERC4 | chr10:69792535 | chr10:70105668 | ENST00000277817 | - | 4 | 23 | 156_207 | 149.0 | 948.0 | Repeat | Note=RCC1 4 |
Hgene | HERC4 | chr10:69792535 | chr10:70105668 | ENST00000277817 | - | 4 | 23 | 208_259 | 149.0 | 948.0 | Repeat | Note=RCC1 5 |
Hgene | HERC4 | chr10:69792535 | chr10:70105668 | ENST00000277817 | - | 4 | 23 | 261_311 | 149.0 | 948.0 | Repeat | Note=RCC1 6 |
Hgene | HERC4 | chr10:69792535 | chr10:70105668 | ENST00000277817 | - | 4 | 23 | 313_368 | 149.0 | 948.0 | Repeat | Note=RCC1 7 |
Hgene | HERC4 | chr10:69792535 | chr10:70105668 | ENST00000373700 | - | 7 | 25 | 261_311 | 259.0 | 1050.0 | Repeat | Note=RCC1 6 |
Hgene | HERC4 | chr10:69792535 | chr10:70105668 | ENST00000373700 | - | 7 | 25 | 313_368 | 259.0 | 1050.0 | Repeat | Note=RCC1 7 |
Hgene | HERC4 | chr10:69792535 | chr10:70105668 | ENST00000395198 | - | 7 | 26 | 261_311 | 259.0 | 1058.0 | Repeat | Note=RCC1 6 |
Hgene | HERC4 | chr10:69792535 | chr10:70105668 | ENST00000395198 | - | 7 | 26 | 313_368 | 259.0 | 1058.0 | Repeat | Note=RCC1 7 |
Hgene | HERC4 | chr10:69792535 | chr10:70105668 | ENST00000412272 | - | 7 | 24 | 261_311 | 259.0 | 980.0 | Repeat | Note=RCC1 6 |
Hgene | HERC4 | chr10:69792535 | chr10:70105668 | ENST00000412272 | - | 7 | 24 | 313_368 | 259.0 | 980.0 | Repeat | Note=RCC1 7 |
Hgene | HERC4 | chr10:69792535 | chr10:70105668 | ENST00000492996 | - | 1 | 4 | 102_154 | 0 | 111.0 | Repeat | Note=RCC1 3 |
Hgene | HERC4 | chr10:69792535 | chr10:70105668 | ENST00000492996 | - | 1 | 4 | 156_207 | 0 | 111.0 | Repeat | Note=RCC1 4 |
Hgene | HERC4 | chr10:69792535 | chr10:70105668 | ENST00000492996 | - | 1 | 4 | 1_51 | 0 | 111.0 | Repeat | Note=RCC1 1 |
Hgene | HERC4 | chr10:69792535 | chr10:70105668 | ENST00000492996 | - | 1 | 4 | 208_259 | 0 | 111.0 | Repeat | Note=RCC1 5 |
Hgene | HERC4 | chr10:69792535 | chr10:70105668 | ENST00000492996 | - | 1 | 4 | 261_311 | 0 | 111.0 | Repeat | Note=RCC1 6 |
Hgene | HERC4 | chr10:69792535 | chr10:70105668 | ENST00000492996 | - | 1 | 4 | 313_368 | 0 | 111.0 | Repeat | Note=RCC1 7 |
Hgene | HERC4 | chr10:69792535 | chr10:70105668 | ENST00000492996 | - | 1 | 4 | 52_101 | 0 | 111.0 | Repeat | Note=RCC1 2 |
Tgene | RUFY2 | chr10:69785303 | chr10:70136729 | ENST00000388768 | 11 | 18 | 210_534 | 436.6666666666667 | 642.0 | Coiled coil | Ontology_term=ECO:0000255 | |
Tgene | RUFY2 | chr10:69785303 | chr10:70136729 | ENST00000602465 | 11 | 18 | 210_534 | 401.6666666666667 | 607.0 | Coiled coil | Ontology_term=ECO:0000255 | |
Tgene | RUFY2 | chr10:69792534 | chr10:70105668 | ENST00000388768 | 16 | 18 | 210_534 | 594.0 | 642.0 | Coiled coil | Ontology_term=ECO:0000255 | |
Tgene | RUFY2 | chr10:69792534 | chr10:70105668 | ENST00000602465 | 16 | 18 | 210_534 | 559.0 | 607.0 | Coiled coil | Ontology_term=ECO:0000255 | |
Tgene | RUFY2 | chr10:69792535 | chr10:70105668 | ENST00000388768 | 16 | 18 | 210_534 | 594.0 | 642.0 | Coiled coil | Ontology_term=ECO:0000255 | |
Tgene | RUFY2 | chr10:69792535 | chr10:70105668 | ENST00000602465 | 16 | 18 | 210_534 | 559.0 | 607.0 | Coiled coil | Ontology_term=ECO:0000255 | |
Tgene | RUFY2 | chr10:69785303 | chr10:70136729 | ENST00000388768 | 11 | 18 | 37_169 | 436.6666666666667 | 642.0 | Domain | RUN | |
Tgene | RUFY2 | chr10:69785303 | chr10:70136729 | ENST00000602465 | 11 | 18 | 37_169 | 401.6666666666667 | 607.0 | Domain | RUN | |
Tgene | RUFY2 | chr10:69792534 | chr10:70105668 | ENST00000388768 | 16 | 18 | 37_169 | 594.0 | 642.0 | Domain | RUN | |
Tgene | RUFY2 | chr10:69792534 | chr10:70105668 | ENST00000602465 | 16 | 18 | 37_169 | 559.0 | 607.0 | Domain | RUN | |
Tgene | RUFY2 | chr10:69792535 | chr10:70105668 | ENST00000388768 | 16 | 18 | 37_169 | 594.0 | 642.0 | Domain | RUN | |
Tgene | RUFY2 | chr10:69792535 | chr10:70105668 | ENST00000602465 | 16 | 18 | 37_169 | 559.0 | 607.0 | Domain | RUN | |
Tgene | RUFY2 | chr10:69792534 | chr10:70105668 | ENST00000388768 | 16 | 18 | 540_598 | 594.0 | 642.0 | Zinc finger | FYVE-type | |
Tgene | RUFY2 | chr10:69792534 | chr10:70105668 | ENST00000602465 | 16 | 18 | 540_598 | 559.0 | 607.0 | Zinc finger | FYVE-type | |
Tgene | RUFY2 | chr10:69792535 | chr10:70105668 | ENST00000388768 | 16 | 18 | 540_598 | 594.0 | 642.0 | Zinc finger | FYVE-type | |
Tgene | RUFY2 | chr10:69792535 | chr10:70105668 | ENST00000602465 | 16 | 18 | 540_598 | 559.0 | 607.0 | Zinc finger | FYVE-type |
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Fusion Gene Sequence for HERC4-RUFY2 |
For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones. |
>In-frame_ENST00000277817_ENST00000388768_TCGA-AR-A0U4-01A_HERC4_chr10_69792535_-_RUFY2_chr10_70105668_length(transcript)=3345nt_BP=942nt GTGGTTAGTAGCGATAAATGCTCTGAAGGAAAAAACATACAGTACTGTGAGAATGTAGTATTTTGAAATGTTTCATTTGCAAAATTGTAC TTGATACTCAGAATAGTGTTTTTTTTTCCTAAAATACTTAATATGCTGAACAGGTCAATGTATCATCTGCCTAGTATGCATAAACAATAA CAGTAAATGTTTAGTAATTTGAGCACAGTTGGGTATGTTCATGTATTTTTTATTCCTTACTCTGTTTGCATTGCCAGTGTTTGATTTTGC TATTTCAAAGAAATGGCATTTTGTTGAGTTTGAAAATTTGAAGGTGCATTGGATCCTGCTAATTTGTTGGATTCTGCTAAATTGTAGCAG TACAGCTCTCAGGTTTTGTAGTTAAGAGCATAACTTCACTAAATAAAAATATTTTTAATACAATAATATGGAATCAGAGTAACTCTCCTT TTTCCTGCTCAAACTTTGATTTGCTGAAGCTGCTTCCCGAAAATCATGTGTGTCGACTCTCTGGTCAGAATTTGCTCCGGACTCTCTTAT GGCAGAATCAGAAATATTAAAAGTTTGTCAGATATCCAGATTGTACAGGTTGCTTGTGGTTACTATCATTCACTTGCACTTTCTAAAGCA AGTGAAGTCTTCTGTTGGGGACAGAATAAATATGGCCAATTGGGTTTAGGTACTGACTGTAAAAAGCAAACTTCACCGCAGCTGCTTAAG TCTTTGCTTGGAATCCCTTTCATGCAAGTTGCAGCAGGAGGAGCCCATAGTTTTGTACTCACCCTTTCTGGAGCTATCTTTGGATGGGGA CGCAACAAGTTTGGTCAGCTAGGTCTTAATGATGAAAATGATAGGTATGTTCCTAATTTACTAAAGTCACTAAGATCTCAGAAAATAGTT TATATTTGTTGTGGAGAAGATCATACTGCTGCTCTAACCAAGCACCACTGTAGAAATTGTGGGGAAATTTTCTGTAATGCCTGCTCTGAC AACGAACTACCTTTGCCTTCTTCACCAAAACCAGTACGGGTTTGTGATTCCTGTCATGCACTGCTCATTCAGAGATGCTCATCTAACTTG CCCTGAGACTCCAGAACTAAATCCTTATGTATGAAATTACCTACAATGAATGTTATGATGTTGTATACAAAGGTAACCAGACAGCTCTCC TTAAGCGGCTTTCGGTCAGTATTTGGTACCAGTTTATCTTCTACATATTCAGCTCATGGAAATTACAAGTTATATATTTCCTTCCCCATT GTTTTTCAAAATGTATTTTCAACAGAGCATGCTTAAAAATCATGTAACTCATTAAAAGGCCAGAGAGCAGAGCTAACACAACTTGCCTTA TCTTGTAAAGGCCTTAAAAATAAGGCTTCAGATTGTTTTTTTCTTCTGAATTCTGTCAATTTGGTATTTGATGGTGCCTGCAGTTCTCTT AATGCACTTTAAAGCTTCACAGTTCTGAAACTGGAAACGCATAAAACTTTTAAAATTATTAATATTCTAATTCAACAGATTTTCATTATC TTTGTAAGATTTCAACTATATTTATTTGCCCTTTCTTCTCCCCCTCTCCCTTTGCCTCTTGCATTAGACAGGGCCAATATTTTGTCCTAC AAAATTTCCTCTTGGTCTCTTTAAAAATCAGTTATTGTCGTGCTTGCTGAAGATTTTCAGCTACAGTGGATTAAATTAAAGGGGGCATTA TTTGGCCTCGGCCTCTACTTTTTTCCTTTTAATCTTGAAAGGAAGTTACATATAACCATCTTTCTTTTCCTGATTTATAAATCTTCCCAT ATGCTGTTTCATTAAATTGCTGTTTTTTTAAGGGGTGACTCAGACCCCAATTCAAAGATGAAAACACAAATCCTTCCCCAGAAAAAAAAG TATGTAATAGTAGGGGATGTTACAGGCTCCTTATAAAGGTCCTCTCCTCTAAGCATTAAAAGTGAGAAAAAAATCAGGACTTTGCTTTGG TAATGTATTAGAGTTCAGTTCAAAAAATTTTGTATTAACATTTTCATTGGAGTAAATTTTAGGAAGTATCACATTGTAGTGGCCTACCTG TATACATCCACAGTAAAATTTCACCATGTCCATTGAGCACCTCTATGCCAAGGGTGTTGAGATGATGAAATATACACTTGACCTATTTCT TTTTTTTTCGAGATGGAGTTTCACTCTTGTTGCCTAGGCTGGAGTGCAATGGCACGATCTCCACCTCCTGGGTTCAAGCAATTCTCCTGC CTCAGCCTCCCAAGTAGCTGGGATTACAGGCGTGAGCCACAGCACCTGGCCAGTACACTTGACCTATTTCAAGCTGACTCAATGAACACT AATCCAAGTTATATTGCTTATGGCATACTAAGAATTTAACTTGTATAAATTACCTCTGAATAGTTACATAAACACTATCACCATTCAGTA TCCTATTTTTTACATTAATTTTTAACCATGCACTTTAAGTTTGTGAGCCTATAAAAAATACATAGAAAATTTATGGATTAAGAGCATTAT ATTTAGTGGTTAATCCTAGGTACCTCCCTGCCTACAAAGGAGTTCTTATTAATACTGCAGGATCTTTTCTTCATGAATATATGCTTCCAT GAAATTTAAATTTTTCTGAATAGCCTAAGTATGAAATGAATATTTTACTTGAAGATCTATTTTTTCCAAAACCCGTAAATTTCCAGTCAG CTTTTGAGGTGTCAGATGTGACACAGATTTCTAGATGGTCTTTCTTGAATACTGACAGAAATGTCCTCAAGAGAGGATTATATTCTTGAA CCATTTTGTATTGATAGGTGGGATGGGCTAACATTTTTATGATTACTGAATAAACAAAAAATGAAATTTTCAAATATGCTTTTTTATTAC TGTGCTTAGAACAAATTTTAAAATGTGACTTAAGTTGCTTAAATTCCAAGGCTAATTTCATTCAACAAACCATGATTTTGTCATCCTTTA AGTAAGTTTCTCACTTTTCAAAACTCATGTATCAACACTGACTGACTTGCTTTTTTTTTTTTTTTTTTTTTTTTTAGGCAGCTTTTATGA CAGCAACTTGCTCCATGTAGTTTTGGCTTATTTAAAAACTATACTAACTTTGGATTTTTCTGTTACAAGACTTTTAACAATCTGTATTTC GTGATTGTGAACTCGTATTCATTTTACTTTTCAAAAACAGACTTAACATACCATTCCCTCACCTAGCAGTACTACCACAATAATGCTATC ATGGTGCCAGGGAATTACAATTGTAATTCTTCTAACCTATAATGTTTAAAAAATAAAATGTGAATTTTATGAACTAAATAAATATTTGGA >In-frame_ENST00000277817_ENST00000388768_TCGA-AR-A0U4-01A_HERC4_chr10_69792535_-_RUFY2_chr10_70105668_length(amino acids)=196AA_start in transcript=495_stop in transcript=1085 MCVDSLVRICSGLSYGRIRNIKSLSDIQIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGTDCKKQTSPQLLKSLLGIPFMQVAAGGA HSFVLTLSGAIFGWGRNKFGQLGLNDENDRYVPNLLKSLRSQKIVYICCGEDHTAALTKHHCRNCGEIFCNACSDNELPLPSSPKPVRVC -------------------------------------------------------------- >In-frame_ENST00000412272_ENST00000265865_TCGA-AR-A0U4-01A_HERC4_chr10_69792535_-_RUFY2_chr10_70105668_length(transcript)=1792nt_BP=1025nt AGTCTCTTCCCCAACTCTCCCCACCCCTGGTGCTCTCCGCCCCGCTTGCCTCCCGTTCTTCCCCGCCCGCTCCATCCGGGTCGCTGACGG CTGTCTCTGGACTGGACAGCAGTGGCGTCCGCTTTTCTCTAAGGAACCCGATAAGAACTCCATTTTCTGTTGATGTGGAGACATAGGGTA CCTCCAACTTTCCGGGGTTTCAGAAGAGAATTTTTTATTGAAACTGGAAGACCAAAATAATTACAAGCATGTTGTGCTGGGGAAATGCAT CCTTTGGGCAGCTAGGTTTGGGTGGAATTGATGAAGAAATTGTACTAGAGCCCAGAAAAAGTGACTTCTTTATAAATAAAAGGGTCCGAG ATGTAGGATGTGGACTCAGACATACTGTGTTTGTTCTGGATGATGGAACAGTGTACACATGTGGATGTAATGATCTAGGACAGCTAGGTC ATGAAAAATCCAGAAAGAAACCAGAGCAGGTTGTTGCCCTGGATGCCCAAAATATTGTAGCTGTTTCATGTGGAGAAGCTCATACGTTAG CGCTAAATGACAAAGGCCAGGTGTATGCTTGGGGTCTCGATTCTGATGGACAGCTTGGCCTGGTAGGATCAGAGGAATGCATCAGAGTAC CCAGAAATATTAAAAGTTTGTCAGATATCCAGATTGTACAGGTTGCTTGTGGTTACTATCATTCACTTGCACTTTCTAAAGCAAGTGAAG TCTTCTGTTGGGGACAGAATAAATATGGCCAATTGGGTTTAGGTACTGACTGTAAAAAGCAAACTTCACCGCAGCTGCTTAAGTCTTTGC TTGGAATCCCTTTCATGCAAGTTGCAGCAGGAGGAGCCCATAGTTTTGTACTCACCCTTTCTGGAGCTATCTTTGGATGGGGACGCAACA AGTTTGGTCAGCTAGGTCTTAATGATGAAAATGATAGGTATGTTCCTAATTTACTAAAGTCACTAAGATCTCAGAAAATAGTTTATATTT GTTGTGGAGAAGATCATACTGCTGCTCTAACCAAGCACCACTGTAGAAATTGTGGGGAAATTTTCTGTAATGCCTGCTCTGACAACGAAC TACCTTTGCCTTCTTCACCAAAACCAGTACGGGTTTGTGATTCCTGTCATGCACTGCTCATTCAGAGATGCTCATCTAACTTGCCCTGAG ACTCCAGAACTAAATCCTTATGTATGAAATTACCTACAATGAATGTTATGATGTTGTATACAAAGGTAACCAGACAGCTCTCCTTAAGCG GCTTTCGGTCAGTATTTGGTACCAGTTTATCTTCTACATATTCAGCTCATGGAAATTACAAGTTATATATTTCCTTCCCCATTGTTTTTC AAAATGTATTTTCAACAGAGCATGCTTAAAAATCATGTAACTCATTAAAAGGCCAGAGAGCAGAGCTAACACAACTTGCCTTATCTTGTA AAGGCCTTAAAAATAAGGCTTCAGATTGTTTTTTTCTTCTGAATTCTGTCAATTTGGTATTTGATGGTGCCTGCAGTTCTCTTAATGCAC TTTAAAGCTTCACAGTTCTGAAACTGGAAACGCATAAAACTTTTAAAATTATTAATATTCTAATTCAACAGATTTTCATTATCTTTGTAA GATTTCAACTATATTTATTTGCCCTTTCTTCTCCCCCTCTCCCTTTGCCTCTTGCATTAGACAGGGCCAATATTTTGTCCTACAAAATTT >In-frame_ENST00000412272_ENST00000265865_TCGA-AR-A0U4-01A_HERC4_chr10_69792535_-_RUFY2_chr10_70105668_length(amino acids)=306AA_start in transcript=248_stop in transcript=1168 MLCWGNASFGQLGLGGIDEEIVLEPRKSDFFINKRVRDVGCGLRHTVFVLDDGTVYTCGCNDLGQLGHEKSRKKPEQVVALDAQNIVAVS CGEAHTLALNDKGQVYAWGLDSDGQLGLVGSEECIRVPRNIKSLSDIQIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGTDCKKQTS PQLLKSLLGIPFMQVAAGGAHSFVLTLSGAIFGWGRNKFGQLGLNDENDRYVPNLLKSLRSQKIVYICCGEDHTAALTKHHCRNCGEIFC -------------------------------------------------------------- >In-frame_ENST00000395198_ENST00000265865_TCGA-AR-A0U4-01A_HERC4_chr10_69792535_-_RUFY2_chr10_70105668_length(transcript)=1792nt_BP=1025nt AGTCTCTTCCCCAACTCTCCCCACCCCTGGTGCTCTCCGCCCCGCTTGCCTCCCGTTCTTCCCCGCCCGCTCCATCCGGGTCGCTGACGG CTGTCTCTGGACTGGACAGCAGTGGCGTCCGCTTTTCTCTAAGGAACCCGATAAGAACTCCATTTTCTGTTGATGTGGAGACATAGGGTA CCTCCAACTTTCCGGGGTTTCAGAAGAGAATTTTTTATTGAAACTGGAAGACCAAAATAATTACAAGCATGTTGTGCTGGGGAAATGCAT CCTTTGGGCAGCTAGGTTTGGGTGGAATTGATGAAGAAATTGTACTAGAGCCCAGAAAAAGTGACTTCTTTATAAATAAAAGGGTCCGAG ATGTAGGATGTGGACTCAGACATACTGTGTTTGTTCTGGATGATGGAACAGTGTACACATGTGGATGTAATGATCTAGGACAGCTAGGTC ATGAAAAATCCAGAAAGAAACCAGAGCAGGTTGTTGCCCTGGATGCCCAAAATATTGTAGCTGTTTCATGTGGAGAAGCTCATACGTTAG CGCTAAATGACAAAGGCCAGGTGTATGCTTGGGGTCTCGATTCTGATGGACAGCTTGGCCTGGTAGGATCAGAGGAATGCATCAGAGTAC CCAGAAATATTAAAAGTTTGTCAGATATCCAGATTGTACAGGTTGCTTGTGGTTACTATCATTCACTTGCACTTTCTAAAGCAAGTGAAG TCTTCTGTTGGGGACAGAATAAATATGGCCAATTGGGTTTAGGTACTGACTGTAAAAAGCAAACTTCACCGCAGCTGCTTAAGTCTTTGC TTGGAATCCCTTTCATGCAAGTTGCAGCAGGAGGAGCCCATAGTTTTGTACTCACCCTTTCTGGAGCTATCTTTGGATGGGGACGCAACA AGTTTGGTCAGCTAGGTCTTAATGATGAAAATGATAGGTATGTTCCTAATTTACTAAAGTCACTAAGATCTCAGAAAATAGTTTATATTT GTTGTGGAGAAGATCATACTGCTGCTCTAACCAAGCACCACTGTAGAAATTGTGGGGAAATTTTCTGTAATGCCTGCTCTGACAACGAAC TACCTTTGCCTTCTTCACCAAAACCAGTACGGGTTTGTGATTCCTGTCATGCACTGCTCATTCAGAGATGCTCATCTAACTTGCCCTGAG ACTCCAGAACTAAATCCTTATGTATGAAATTACCTACAATGAATGTTATGATGTTGTATACAAAGGTAACCAGACAGCTCTCCTTAAGCG GCTTTCGGTCAGTATTTGGTACCAGTTTATCTTCTACATATTCAGCTCATGGAAATTACAAGTTATATATTTCCTTCCCCATTGTTTTTC AAAATGTATTTTCAACAGAGCATGCTTAAAAATCATGTAACTCATTAAAAGGCCAGAGAGCAGAGCTAACACAACTTGCCTTATCTTGTA AAGGCCTTAAAAATAAGGCTTCAGATTGTTTTTTTCTTCTGAATTCTGTCAATTTGGTATTTGATGGTGCCTGCAGTTCTCTTAATGCAC TTTAAAGCTTCACAGTTCTGAAACTGGAAACGCATAAAACTTTTAAAATTATTAATATTCTAATTCAACAGATTTTCATTATCTTTGTAA GATTTCAACTATATTTATTTGCCCTTTCTTCTCCCCCTCTCCCTTTGCCTCTTGCATTAGACAGGGCCAATATTTTGTCCTACAAAATTT >In-frame_ENST00000395198_ENST00000265865_TCGA-AR-A0U4-01A_HERC4_chr10_69792535_-_RUFY2_chr10_70105668_length(amino acids)=306AA_start in transcript=248_stop in transcript=1168 MLCWGNASFGQLGLGGIDEEIVLEPRKSDFFINKRVRDVGCGLRHTVFVLDDGTVYTCGCNDLGQLGHEKSRKKPEQVVALDAQNIVAVS CGEAHTLALNDKGQVYAWGLDSDGQLGLVGSEECIRVPRNIKSLSDIQIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGTDCKKQTS PQLLKSLLGIPFMQVAAGGAHSFVLTLSGAIFGWGRNKFGQLGLNDENDRYVPNLLKSLRSQKIVYICCGEDHTAALTKHHCRNCGEIFC -------------------------------------------------------------- >In-frame_ENST00000373700_ENST00000265865_TCGA-AR-A0U4-01A_HERC4_chr10_69792535_-_RUFY2_chr10_70105668_length(transcript)=1857nt_BP=1090nt ACTTCCGGCCAGCCCCTCCCCCGCCTCCCTCGCGTGGCCACCTCCCCCTCTGCCTTCTCCTACCCAGTCTCTTCCCCAACTCTCCCCACC CCTGGTGCTCTCCGCCCCGCTTGCCTCCCGTTCTTCCCCGCCCGCTCCATCCGGGTCGCTGACGGCTGTCTCTGGACTGGACAGCAGTGG CGTCCGCTTTTCTCTAAGGAACCCGATAAGAACTCCATTTTCTGTTGATGTGGAGACATAGGGTACCTCCAACTTTCCGGGGTTTCAGAA GAGAATTTTTTATTGAAACTGGAAGACCAAAATAATTACAAGCATGTTGTGCTGGGGAAATGCATCCTTTGGGCAGCTAGGTTTGGGTGG AATTGATGAAGAAATTGTACTAGAGCCCAGAAAAAGTGACTTCTTTATAAATAAAAGGGTCCGAGATGTAGGATGTGGACTCAGACATAC TGTGTTTGTTCTGGATGATGGAACAGTGTACACATGTGGATGTAATGATCTAGGACAGCTAGGTCATGAAAAATCCAGAAAGAAACCAGA GCAGGTTGTTGCCCTGGATGCCCAAAATATTGTAGCTGTTTCATGTGGAGAAGCTCATACGTTAGCGCTAAATGACAAAGGCCAGGTGTA TGCTTGGGGTCTCGATTCTGATGGACAGCTTGGCCTGGTAGGATCAGAGGAATGCATCAGAGTACCCAGAAATATTAAAAGTTTGTCAGA TATCCAGATTGTACAGGTTGCTTGTGGTTACTATCATTCACTTGCACTTTCTAAAGCAAGTGAAGTCTTCTGTTGGGGACAGAATAAATA TGGCCAATTGGGTTTAGGTACTGACTGTAAAAAGCAAACTTCACCGCAGCTGCTTAAGTCTTTGCTTGGAATCCCTTTCATGCAAGTTGC AGCAGGAGGAGCCCATAGTTTTGTACTCACCCTTTCTGGAGCTATCTTTGGATGGGGACGCAACAAGTTTGGTCAGCTAGGTCTTAATGA TGAAAATGATAGGTATGTTCCTAATTTACTAAAGTCACTAAGATCTCAGAAAATAGTTTATATTTGTTGTGGAGAAGATCATACTGCTGC TCTAACCAAGCACCACTGTAGAAATTGTGGGGAAATTTTCTGTAATGCCTGCTCTGACAACGAACTACCTTTGCCTTCTTCACCAAAACC AGTACGGGTTTGTGATTCCTGTCATGCACTGCTCATTCAGAGATGCTCATCTAACTTGCCCTGAGACTCCAGAACTAAATCCTTATGTAT GAAATTACCTACAATGAATGTTATGATGTTGTATACAAAGGTAACCAGACAGCTCTCCTTAAGCGGCTTTCGGTCAGTATTTGGTACCAG TTTATCTTCTACATATTCAGCTCATGGAAATTACAAGTTATATATTTCCTTCCCCATTGTTTTTCAAAATGTATTTTCAACAGAGCATGC TTAAAAATCATGTAACTCATTAAAAGGCCAGAGAGCAGAGCTAACACAACTTGCCTTATCTTGTAAAGGCCTTAAAAATAAGGCTTCAGA TTGTTTTTTTCTTCTGAATTCTGTCAATTTGGTATTTGATGGTGCCTGCAGTTCTCTTAATGCACTTTAAAGCTTCACAGTTCTGAAACT GGAAACGCATAAAACTTTTAAAATTATTAATATTCTAATTCAACAGATTTTCATTATCTTTGTAAGATTTCAACTATATTTATTTGCCCT TTCTTCTCCCCCTCTCCCTTTGCCTCTTGCATTAGACAGGGCCAATATTTTGTCCTACAAAATTTCCTCTTGGTCTCTTTAAAAATCAGT >In-frame_ENST00000373700_ENST00000265865_TCGA-AR-A0U4-01A_HERC4_chr10_69792535_-_RUFY2_chr10_70105668_length(amino acids)=306AA_start in transcript=313_stop in transcript=1233 MLCWGNASFGQLGLGGIDEEIVLEPRKSDFFINKRVRDVGCGLRHTVFVLDDGTVYTCGCNDLGQLGHEKSRKKPEQVVALDAQNIVAVS CGEAHTLALNDKGQVYAWGLDSDGQLGLVGSEECIRVPRNIKSLSDIQIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGTDCKKQTS PQLLKSLLGIPFMQVAAGGAHSFVLTLSGAIFGWGRNKFGQLGLNDENDRYVPNLLKSLRSQKIVYICCGEDHTAALTKHHCRNCGEIFC -------------------------------------------------------------- >In-frame_ENST00000277817_ENST00000388768_TCGA-AR-A0U4_HERC4_chr10_69792534_-_RUFY2_chr10_70105668_length(transcript)=3345nt_BP=942nt GTGGTTAGTAGCGATAAATGCTCTGAAGGAAAAAACATACAGTACTGTGAGAATGTAGTATTTTGAAATGTTTCATTTGCAAAATTGTAC TTGATACTCAGAATAGTGTTTTTTTTTCCTAAAATACTTAATATGCTGAACAGGTCAATGTATCATCTGCCTAGTATGCATAAACAATAA CAGTAAATGTTTAGTAATTTGAGCACAGTTGGGTATGTTCATGTATTTTTTATTCCTTACTCTGTTTGCATTGCCAGTGTTTGATTTTGC TATTTCAAAGAAATGGCATTTTGTTGAGTTTGAAAATTTGAAGGTGCATTGGATCCTGCTAATTTGTTGGATTCTGCTAAATTGTAGCAG TACAGCTCTCAGGTTTTGTAGTTAAGAGCATAACTTCACTAAATAAAAATATTTTTAATACAATAATATGGAATCAGAGTAACTCTCCTT TTTCCTGCTCAAACTTTGATTTGCTGAAGCTGCTTCCCGAAAATCATGTGTGTCGACTCTCTGGTCAGAATTTGCTCCGGACTCTCTTAT GGCAGAATCAGAAATATTAAAAGTTTGTCAGATATCCAGATTGTACAGGTTGCTTGTGGTTACTATCATTCACTTGCACTTTCTAAAGCA AGTGAAGTCTTCTGTTGGGGACAGAATAAATATGGCCAATTGGGTTTAGGTACTGACTGTAAAAAGCAAACTTCACCGCAGCTGCTTAAG TCTTTGCTTGGAATCCCTTTCATGCAAGTTGCAGCAGGAGGAGCCCATAGTTTTGTACTCACCCTTTCTGGAGCTATCTTTGGATGGGGA CGCAACAAGTTTGGTCAGCTAGGTCTTAATGATGAAAATGATAGGTATGTTCCTAATTTACTAAAGTCACTAAGATCTCAGAAAATAGTT TATATTTGTTGTGGAGAAGATCATACTGCTGCTCTAACCAAGCACCACTGTAGAAATTGTGGGGAAATTTTCTGTAATGCCTGCTCTGAC AACGAACTACCTTTGCCTTCTTCACCAAAACCAGTACGGGTTTGTGATTCCTGTCATGCACTGCTCATTCAGAGATGCTCATCTAACTTG CCCTGAGACTCCAGAACTAAATCCTTATGTATGAAATTACCTACAATGAATGTTATGATGTTGTATACAAAGGTAACCAGACAGCTCTCC TTAAGCGGCTTTCGGTCAGTATTTGGTACCAGTTTATCTTCTACATATTCAGCTCATGGAAATTACAAGTTATATATTTCCTTCCCCATT GTTTTTCAAAATGTATTTTCAACAGAGCATGCTTAAAAATCATGTAACTCATTAAAAGGCCAGAGAGCAGAGCTAACACAACTTGCCTTA TCTTGTAAAGGCCTTAAAAATAAGGCTTCAGATTGTTTTTTTCTTCTGAATTCTGTCAATTTGGTATTTGATGGTGCCTGCAGTTCTCTT AATGCACTTTAAAGCTTCACAGTTCTGAAACTGGAAACGCATAAAACTTTTAAAATTATTAATATTCTAATTCAACAGATTTTCATTATC TTTGTAAGATTTCAACTATATTTATTTGCCCTTTCTTCTCCCCCTCTCCCTTTGCCTCTTGCATTAGACAGGGCCAATATTTTGTCCTAC AAAATTTCCTCTTGGTCTCTTTAAAAATCAGTTATTGTCGTGCTTGCTGAAGATTTTCAGCTACAGTGGATTAAATTAAAGGGGGCATTA TTTGGCCTCGGCCTCTACTTTTTTCCTTTTAATCTTGAAAGGAAGTTACATATAACCATCTTTCTTTTCCTGATTTATAAATCTTCCCAT ATGCTGTTTCATTAAATTGCTGTTTTTTTAAGGGGTGACTCAGACCCCAATTCAAAGATGAAAACACAAATCCTTCCCCAGAAAAAAAAG TATGTAATAGTAGGGGATGTTACAGGCTCCTTATAAAGGTCCTCTCCTCTAAGCATTAAAAGTGAGAAAAAAATCAGGACTTTGCTTTGG TAATGTATTAGAGTTCAGTTCAAAAAATTTTGTATTAACATTTTCATTGGAGTAAATTTTAGGAAGTATCACATTGTAGTGGCCTACCTG TATACATCCACAGTAAAATTTCACCATGTCCATTGAGCACCTCTATGCCAAGGGTGTTGAGATGATGAAATATACACTTGACCTATTTCT TTTTTTTTCGAGATGGAGTTTCACTCTTGTTGCCTAGGCTGGAGTGCAATGGCACGATCTCCACCTCCTGGGTTCAAGCAATTCTCCTGC CTCAGCCTCCCAAGTAGCTGGGATTACAGGCGTGAGCCACAGCACCTGGCCAGTACACTTGACCTATTTCAAGCTGACTCAATGAACACT AATCCAAGTTATATTGCTTATGGCATACTAAGAATTTAACTTGTATAAATTACCTCTGAATAGTTACATAAACACTATCACCATTCAGTA TCCTATTTTTTACATTAATTTTTAACCATGCACTTTAAGTTTGTGAGCCTATAAAAAATACATAGAAAATTTATGGATTAAGAGCATTAT ATTTAGTGGTTAATCCTAGGTACCTCCCTGCCTACAAAGGAGTTCTTATTAATACTGCAGGATCTTTTCTTCATGAATATATGCTTCCAT GAAATTTAAATTTTTCTGAATAGCCTAAGTATGAAATGAATATTTTACTTGAAGATCTATTTTTTCCAAAACCCGTAAATTTCCAGTCAG CTTTTGAGGTGTCAGATGTGACACAGATTTCTAGATGGTCTTTCTTGAATACTGACAGAAATGTCCTCAAGAGAGGATTATATTCTTGAA CCATTTTGTATTGATAGGTGGGATGGGCTAACATTTTTATGATTACTGAATAAACAAAAAATGAAATTTTCAAATATGCTTTTTTATTAC TGTGCTTAGAACAAATTTTAAAATGTGACTTAAGTTGCTTAAATTCCAAGGCTAATTTCATTCAACAAACCATGATTTTGTCATCCTTTA AGTAAGTTTCTCACTTTTCAAAACTCATGTATCAACACTGACTGACTTGCTTTTTTTTTTTTTTTTTTTTTTTTTAGGCAGCTTTTATGA CAGCAACTTGCTCCATGTAGTTTTGGCTTATTTAAAAACTATACTAACTTTGGATTTTTCTGTTACAAGACTTTTAACAATCTGTATTTC GTGATTGTGAACTCGTATTCATTTTACTTTTCAAAAACAGACTTAACATACCATTCCCTCACCTAGCAGTACTACCACAATAATGCTATC ATGGTGCCAGGGAATTACAATTGTAATTCTTCTAACCTATAATGTTTAAAAAATAAAATGTGAATTTTATGAACTAAATAAATATTTGGA >In-frame_ENST00000277817_ENST00000388768_TCGA-AR-A0U4_HERC4_chr10_69792534_-_RUFY2_chr10_70105668_length(amino acids)=196AA_start in transcript=495_stop in transcript=1085 MCVDSLVRICSGLSYGRIRNIKSLSDIQIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGTDCKKQTSPQLLKSLLGIPFMQVAAGGA HSFVLTLSGAIFGWGRNKFGQLGLNDENDRYVPNLLKSLRSQKIVYICCGEDHTAALTKHHCRNCGEIFCNACSDNELPLPSSPKPVRVC -------------------------------------------------------------- >In-frame_ENST00000412272_ENST00000265865_TCGA-AR-A0U4_HERC4_chr10_69792534_-_RUFY2_chr10_70105668_length(transcript)=1792nt_BP=1025nt AGTCTCTTCCCCAACTCTCCCCACCCCTGGTGCTCTCCGCCCCGCTTGCCTCCCGTTCTTCCCCGCCCGCTCCATCCGGGTCGCTGACGG CTGTCTCTGGACTGGACAGCAGTGGCGTCCGCTTTTCTCTAAGGAACCCGATAAGAACTCCATTTTCTGTTGATGTGGAGACATAGGGTA CCTCCAACTTTCCGGGGTTTCAGAAGAGAATTTTTTATTGAAACTGGAAGACCAAAATAATTACAAGCATGTTGTGCTGGGGAAATGCAT CCTTTGGGCAGCTAGGTTTGGGTGGAATTGATGAAGAAATTGTACTAGAGCCCAGAAAAAGTGACTTCTTTATAAATAAAAGGGTCCGAG ATGTAGGATGTGGACTCAGACATACTGTGTTTGTTCTGGATGATGGAACAGTGTACACATGTGGATGTAATGATCTAGGACAGCTAGGTC ATGAAAAATCCAGAAAGAAACCAGAGCAGGTTGTTGCCCTGGATGCCCAAAATATTGTAGCTGTTTCATGTGGAGAAGCTCATACGTTAG CGCTAAATGACAAAGGCCAGGTGTATGCTTGGGGTCTCGATTCTGATGGACAGCTTGGCCTGGTAGGATCAGAGGAATGCATCAGAGTAC CCAGAAATATTAAAAGTTTGTCAGATATCCAGATTGTACAGGTTGCTTGTGGTTACTATCATTCACTTGCACTTTCTAAAGCAAGTGAAG TCTTCTGTTGGGGACAGAATAAATATGGCCAATTGGGTTTAGGTACTGACTGTAAAAAGCAAACTTCACCGCAGCTGCTTAAGTCTTTGC TTGGAATCCCTTTCATGCAAGTTGCAGCAGGAGGAGCCCATAGTTTTGTACTCACCCTTTCTGGAGCTATCTTTGGATGGGGACGCAACA AGTTTGGTCAGCTAGGTCTTAATGATGAAAATGATAGGTATGTTCCTAATTTACTAAAGTCACTAAGATCTCAGAAAATAGTTTATATTT GTTGTGGAGAAGATCATACTGCTGCTCTAACCAAGCACCACTGTAGAAATTGTGGGGAAATTTTCTGTAATGCCTGCTCTGACAACGAAC TACCTTTGCCTTCTTCACCAAAACCAGTACGGGTTTGTGATTCCTGTCATGCACTGCTCATTCAGAGATGCTCATCTAACTTGCCCTGAG ACTCCAGAACTAAATCCTTATGTATGAAATTACCTACAATGAATGTTATGATGTTGTATACAAAGGTAACCAGACAGCTCTCCTTAAGCG GCTTTCGGTCAGTATTTGGTACCAGTTTATCTTCTACATATTCAGCTCATGGAAATTACAAGTTATATATTTCCTTCCCCATTGTTTTTC AAAATGTATTTTCAACAGAGCATGCTTAAAAATCATGTAACTCATTAAAAGGCCAGAGAGCAGAGCTAACACAACTTGCCTTATCTTGTA AAGGCCTTAAAAATAAGGCTTCAGATTGTTTTTTTCTTCTGAATTCTGTCAATTTGGTATTTGATGGTGCCTGCAGTTCTCTTAATGCAC TTTAAAGCTTCACAGTTCTGAAACTGGAAACGCATAAAACTTTTAAAATTATTAATATTCTAATTCAACAGATTTTCATTATCTTTGTAA GATTTCAACTATATTTATTTGCCCTTTCTTCTCCCCCTCTCCCTTTGCCTCTTGCATTAGACAGGGCCAATATTTTGTCCTACAAAATTT >In-frame_ENST00000412272_ENST00000265865_TCGA-AR-A0U4_HERC4_chr10_69792534_-_RUFY2_chr10_70105668_length(amino acids)=306AA_start in transcript=248_stop in transcript=1168 MLCWGNASFGQLGLGGIDEEIVLEPRKSDFFINKRVRDVGCGLRHTVFVLDDGTVYTCGCNDLGQLGHEKSRKKPEQVVALDAQNIVAVS CGEAHTLALNDKGQVYAWGLDSDGQLGLVGSEECIRVPRNIKSLSDIQIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGTDCKKQTS PQLLKSLLGIPFMQVAAGGAHSFVLTLSGAIFGWGRNKFGQLGLNDENDRYVPNLLKSLRSQKIVYICCGEDHTAALTKHHCRNCGEIFC -------------------------------------------------------------- >In-frame_ENST00000395198_ENST00000265865_TCGA-AR-A0U4_HERC4_chr10_69792534_-_RUFY2_chr10_70105668_length(transcript)=1792nt_BP=1025nt AGTCTCTTCCCCAACTCTCCCCACCCCTGGTGCTCTCCGCCCCGCTTGCCTCCCGTTCTTCCCCGCCCGCTCCATCCGGGTCGCTGACGG CTGTCTCTGGACTGGACAGCAGTGGCGTCCGCTTTTCTCTAAGGAACCCGATAAGAACTCCATTTTCTGTTGATGTGGAGACATAGGGTA CCTCCAACTTTCCGGGGTTTCAGAAGAGAATTTTTTATTGAAACTGGAAGACCAAAATAATTACAAGCATGTTGTGCTGGGGAAATGCAT CCTTTGGGCAGCTAGGTTTGGGTGGAATTGATGAAGAAATTGTACTAGAGCCCAGAAAAAGTGACTTCTTTATAAATAAAAGGGTCCGAG ATGTAGGATGTGGACTCAGACATACTGTGTTTGTTCTGGATGATGGAACAGTGTACACATGTGGATGTAATGATCTAGGACAGCTAGGTC ATGAAAAATCCAGAAAGAAACCAGAGCAGGTTGTTGCCCTGGATGCCCAAAATATTGTAGCTGTTTCATGTGGAGAAGCTCATACGTTAG CGCTAAATGACAAAGGCCAGGTGTATGCTTGGGGTCTCGATTCTGATGGACAGCTTGGCCTGGTAGGATCAGAGGAATGCATCAGAGTAC CCAGAAATATTAAAAGTTTGTCAGATATCCAGATTGTACAGGTTGCTTGTGGTTACTATCATTCACTTGCACTTTCTAAAGCAAGTGAAG TCTTCTGTTGGGGACAGAATAAATATGGCCAATTGGGTTTAGGTACTGACTGTAAAAAGCAAACTTCACCGCAGCTGCTTAAGTCTTTGC TTGGAATCCCTTTCATGCAAGTTGCAGCAGGAGGAGCCCATAGTTTTGTACTCACCCTTTCTGGAGCTATCTTTGGATGGGGACGCAACA AGTTTGGTCAGCTAGGTCTTAATGATGAAAATGATAGGTATGTTCCTAATTTACTAAAGTCACTAAGATCTCAGAAAATAGTTTATATTT GTTGTGGAGAAGATCATACTGCTGCTCTAACCAAGCACCACTGTAGAAATTGTGGGGAAATTTTCTGTAATGCCTGCTCTGACAACGAAC TACCTTTGCCTTCTTCACCAAAACCAGTACGGGTTTGTGATTCCTGTCATGCACTGCTCATTCAGAGATGCTCATCTAACTTGCCCTGAG ACTCCAGAACTAAATCCTTATGTATGAAATTACCTACAATGAATGTTATGATGTTGTATACAAAGGTAACCAGACAGCTCTCCTTAAGCG GCTTTCGGTCAGTATTTGGTACCAGTTTATCTTCTACATATTCAGCTCATGGAAATTACAAGTTATATATTTCCTTCCCCATTGTTTTTC AAAATGTATTTTCAACAGAGCATGCTTAAAAATCATGTAACTCATTAAAAGGCCAGAGAGCAGAGCTAACACAACTTGCCTTATCTTGTA AAGGCCTTAAAAATAAGGCTTCAGATTGTTTTTTTCTTCTGAATTCTGTCAATTTGGTATTTGATGGTGCCTGCAGTTCTCTTAATGCAC TTTAAAGCTTCACAGTTCTGAAACTGGAAACGCATAAAACTTTTAAAATTATTAATATTCTAATTCAACAGATTTTCATTATCTTTGTAA GATTTCAACTATATTTATTTGCCCTTTCTTCTCCCCCTCTCCCTTTGCCTCTTGCATTAGACAGGGCCAATATTTTGTCCTACAAAATTT >In-frame_ENST00000395198_ENST00000265865_TCGA-AR-A0U4_HERC4_chr10_69792534_-_RUFY2_chr10_70105668_length(amino acids)=306AA_start in transcript=248_stop in transcript=1168 MLCWGNASFGQLGLGGIDEEIVLEPRKSDFFINKRVRDVGCGLRHTVFVLDDGTVYTCGCNDLGQLGHEKSRKKPEQVVALDAQNIVAVS CGEAHTLALNDKGQVYAWGLDSDGQLGLVGSEECIRVPRNIKSLSDIQIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGTDCKKQTS PQLLKSLLGIPFMQVAAGGAHSFVLTLSGAIFGWGRNKFGQLGLNDENDRYVPNLLKSLRSQKIVYICCGEDHTAALTKHHCRNCGEIFC -------------------------------------------------------------- >In-frame_ENST00000373700_ENST00000265865_TCGA-AR-A0U4_HERC4_chr10_69792534_-_RUFY2_chr10_70105668_length(transcript)=1857nt_BP=1090nt ACTTCCGGCCAGCCCCTCCCCCGCCTCCCTCGCGTGGCCACCTCCCCCTCTGCCTTCTCCTACCCAGTCTCTTCCCCAACTCTCCCCACC CCTGGTGCTCTCCGCCCCGCTTGCCTCCCGTTCTTCCCCGCCCGCTCCATCCGGGTCGCTGACGGCTGTCTCTGGACTGGACAGCAGTGG CGTCCGCTTTTCTCTAAGGAACCCGATAAGAACTCCATTTTCTGTTGATGTGGAGACATAGGGTACCTCCAACTTTCCGGGGTTTCAGAA GAGAATTTTTTATTGAAACTGGAAGACCAAAATAATTACAAGCATGTTGTGCTGGGGAAATGCATCCTTTGGGCAGCTAGGTTTGGGTGG AATTGATGAAGAAATTGTACTAGAGCCCAGAAAAAGTGACTTCTTTATAAATAAAAGGGTCCGAGATGTAGGATGTGGACTCAGACATAC TGTGTTTGTTCTGGATGATGGAACAGTGTACACATGTGGATGTAATGATCTAGGACAGCTAGGTCATGAAAAATCCAGAAAGAAACCAGA GCAGGTTGTTGCCCTGGATGCCCAAAATATTGTAGCTGTTTCATGTGGAGAAGCTCATACGTTAGCGCTAAATGACAAAGGCCAGGTGTA TGCTTGGGGTCTCGATTCTGATGGACAGCTTGGCCTGGTAGGATCAGAGGAATGCATCAGAGTACCCAGAAATATTAAAAGTTTGTCAGA TATCCAGATTGTACAGGTTGCTTGTGGTTACTATCATTCACTTGCACTTTCTAAAGCAAGTGAAGTCTTCTGTTGGGGACAGAATAAATA TGGCCAATTGGGTTTAGGTACTGACTGTAAAAAGCAAACTTCACCGCAGCTGCTTAAGTCTTTGCTTGGAATCCCTTTCATGCAAGTTGC AGCAGGAGGAGCCCATAGTTTTGTACTCACCCTTTCTGGAGCTATCTTTGGATGGGGACGCAACAAGTTTGGTCAGCTAGGTCTTAATGA TGAAAATGATAGGTATGTTCCTAATTTACTAAAGTCACTAAGATCTCAGAAAATAGTTTATATTTGTTGTGGAGAAGATCATACTGCTGC TCTAACCAAGCACCACTGTAGAAATTGTGGGGAAATTTTCTGTAATGCCTGCTCTGACAACGAACTACCTTTGCCTTCTTCACCAAAACC AGTACGGGTTTGTGATTCCTGTCATGCACTGCTCATTCAGAGATGCTCATCTAACTTGCCCTGAGACTCCAGAACTAAATCCTTATGTAT GAAATTACCTACAATGAATGTTATGATGTTGTATACAAAGGTAACCAGACAGCTCTCCTTAAGCGGCTTTCGGTCAGTATTTGGTACCAG TTTATCTTCTACATATTCAGCTCATGGAAATTACAAGTTATATATTTCCTTCCCCATTGTTTTTCAAAATGTATTTTCAACAGAGCATGC TTAAAAATCATGTAACTCATTAAAAGGCCAGAGAGCAGAGCTAACACAACTTGCCTTATCTTGTAAAGGCCTTAAAAATAAGGCTTCAGA TTGTTTTTTTCTTCTGAATTCTGTCAATTTGGTATTTGATGGTGCCTGCAGTTCTCTTAATGCACTTTAAAGCTTCACAGTTCTGAAACT GGAAACGCATAAAACTTTTAAAATTATTAATATTCTAATTCAACAGATTTTCATTATCTTTGTAAGATTTCAACTATATTTATTTGCCCT TTCTTCTCCCCCTCTCCCTTTGCCTCTTGCATTAGACAGGGCCAATATTTTGTCCTACAAAATTTCCTCTTGGTCTCTTTAAAAATCAGT >In-frame_ENST00000373700_ENST00000265865_TCGA-AR-A0U4_HERC4_chr10_69792534_-_RUFY2_chr10_70105668_length(amino acids)=306AA_start in transcript=313_stop in transcript=1233 MLCWGNASFGQLGLGGIDEEIVLEPRKSDFFINKRVRDVGCGLRHTVFVLDDGTVYTCGCNDLGQLGHEKSRKKPEQVVALDAQNIVAVS CGEAHTLALNDKGQVYAWGLDSDGQLGLVGSEECIRVPRNIKSLSDIQIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGTDCKKQTS PQLLKSLLGIPFMQVAAGGAHSFVLTLSGAIFGWGRNKFGQLGLNDENDRYVPNLLKSLRSQKIVYICCGEDHTAALTKHHCRNCGEIFC -------------------------------------------------------------- >In-frame_ENST00000277817_ENST00000388768_TCGA-BR-8373-01A_HERC4_chr10_69785303_-_RUFY2_chr10_70136729_length(transcript)=3948nt_BP=1073nt GTGGTTAGTAGCGATAAATGCTCTGAAGGAAAAAACATACAGTACTGTGAGAATGTAGTATTTTGAAATGTTTCATTTGCAAAATTGTAC TTGATACTCAGAATAGTGTTTTTTTTTCCTAAAATACTTAATATGCTGAACAGGTCAATGTATCATCTGCCTAGTATGCATAAACAATAA CAGTAAATGTTTAGTAATTTGAGCACAGTTGGGTATGTTCATGTATTTTTTATTCCTTACTCTGTTTGCATTGCCAGTGTTTGATTTTGC TATTTCAAAGAAATGGCATTTTGTTGAGTTTGAAAATTTGAAGGTGCATTGGATCCTGCTAATTTGTTGGATTCTGCTAAATTGTAGCAG TACAGCTCTCAGGTTTTGTAGTTAAGAGCATAACTTCACTAAATAAAAATATTTTTAATACAATAATATGGAATCAGAGTAACTCTCCTT TTTCCTGCTCAAACTTTGATTTGCTGAAGCTGCTTCCCGAAAATCATGTGTGTCGACTCTCTGGTCAGAATTTGCTCCGGACTCTCTTAT GGCAGAATCAGAAATATTAAAAGTTTGTCAGATATCCAGATTGTACAGGTTGCTTGTGGTTACTATCATTCACTTGCACTTTCTAAAGCA AGTGAAGTCTTCTGTTGGGGACAGAATAAATATGGCCAATTGGGTTTAGGTACTGACTGTAAAAAGCAAACTTCACCGCAGCTGCTTAAG TCTTTGCTTGGAATCCCTTTCATGCAAGTTGCAGCAGGAGGAGCCCATAGTTTTGTACTCACCCTTTCTGGAGCTATCTTTGGATGGGGA CGCAACAAGTTTGGTCAGCTAGGTCTTAATGATGAAAATGATAGGTATGTTCCTAATTTACTAAAGTCACTAAGATCTCAGAAAATAGTT TATATTTGTTGTGGAGAAGATCATACTGCTGCTCTAACCAAGGAAGGTGGAGTGTTTACTTTTGGAGCTGGAGGGTATGGTCAGTTGGGC CATAATTCTACCAGTCATGAAATAAACCCAAGGAAAGTTTTTGAACTTATGGGAAGCATTGTCACTGAGATTGCTTGTGGACGATTGCAG CAAGCAGAGAAGGCGCAAATGGAAGCTGAAGATGAGGATGAGAAATATCTACAAGAATGTCTCAGTAAATCTGATAGTCTGCAGAAACAA ATCTCCCAAAAGGAGAAACAGCTGGTGCAACTGGAAACTGACTTGAAGATTGAGAAGGAATGGAGGCAGACTTTGCAGGAAGATCTTCAA AAGGAGAAAGATGCCTTATCTCATCTTAGAAATGAGACTCAACAAATCATTAGTCTTAAAAAAGAGTTCCTTAACCTCCAGGATGAAAAT CAGCAGTTGAAAAAAATATATCATGAACAAGAGCAAGCTCTTCAAGAACTCGGCAACAAGCTTAGCGAATCAAAACTTAAAATTGAAGAC ATAAAAGAAGCCAACAAAGCATTGCAGGGACTGGTTTGGCTGAAAGACAAAGAAGCAACACATTGTAAACTTTGTGAAAAGGAATTCTCA CTCTCTAAGAGAAAGCACCACTGTAGAAATTGTGGGGAAATTTTCTGTAATGCCTGCTCTGACAACGAACTACCTTTGCCTTCTTCACCA AAACCAGTACGGGTTTGTGATTCCTGTCATGCACTGCTCATTCAGAGATGCTCATCTAACTTGCCCTGAGACTCCAGAACTAAATCCTTA TGTATGAAATTACCTACAATGAATGTTATGATGTTGTATACAAAGGTAACCAGACAGCTCTCCTTAAGCGGCTTTCGGTCAGTATTTGGT ACCAGTTTATCTTCTACATATTCAGCTCATGGAAATTACAAGTTATATATTTCCTTCCCCATTGTTTTTCAAAATGTATTTTCAACAGAG CATGCTTAAAAATCATGTAACTCATTAAAAGGCCAGAGAGCAGAGCTAACACAACTTGCCTTATCTTGTAAAGGCCTTAAAAATAAGGCT TCAGATTGTTTTTTTCTTCTGAATTCTGTCAATTTGGTATTTGATGGTGCCTGCAGTTCTCTTAATGCACTTTAAAGCTTCACAGTTCTG AAACTGGAAACGCATAAAACTTTTAAAATTATTAATATTCTAATTCAACAGATTTTCATTATCTTTGTAAGATTTCAACTATATTTATTT GCCCTTTCTTCTCCCCCTCTCCCTTTGCCTCTTGCATTAGACAGGGCCAATATTTTGTCCTACAAAATTTCCTCTTGGTCTCTTTAAAAA TCAGTTATTGTCGTGCTTGCTGAAGATTTTCAGCTACAGTGGATTAAATTAAAGGGGGCATTATTTGGCCTCGGCCTCTACTTTTTTCCT TTTAATCTTGAAAGGAAGTTACATATAACCATCTTTCTTTTCCTGATTTATAAATCTTCCCATATGCTGTTTCATTAAATTGCTGTTTTT TTAAGGGGTGACTCAGACCCCAATTCAAAGATGAAAACACAAATCCTTCCCCAGAAAAAAAAGTATGTAATAGTAGGGGATGTTACAGGC TCCTTATAAAGGTCCTCTCCTCTAAGCATTAAAAGTGAGAAAAAAATCAGGACTTTGCTTTGGTAATGTATTAGAGTTCAGTTCAAAAAA TTTTGTATTAACATTTTCATTGGAGTAAATTTTAGGAAGTATCACATTGTAGTGGCCTACCTGTATACATCCACAGTAAAATTTCACCAT GTCCATTGAGCACCTCTATGCCAAGGGTGTTGAGATGATGAAATATACACTTGACCTATTTCTTTTTTTTTCGAGATGGAGTTTCACTCT TGTTGCCTAGGCTGGAGTGCAATGGCACGATCTCCACCTCCTGGGTTCAAGCAATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGATTAC AGGCGTGAGCCACAGCACCTGGCCAGTACACTTGACCTATTTCAAGCTGACTCAATGAACACTAATCCAAGTTATATTGCTTATGGCATA CTAAGAATTTAACTTGTATAAATTACCTCTGAATAGTTACATAAACACTATCACCATTCAGTATCCTATTTTTTACATTAATTTTTAACC ATGCACTTTAAGTTTGTGAGCCTATAAAAAATACATAGAAAATTTATGGATTAAGAGCATTATATTTAGTGGTTAATCCTAGGTACCTCC CTGCCTACAAAGGAGTTCTTATTAATACTGCAGGATCTTTTCTTCATGAATATATGCTTCCATGAAATTTAAATTTTTCTGAATAGCCTA AGTATGAAATGAATATTTTACTTGAAGATCTATTTTTTCCAAAACCCGTAAATTTCCAGTCAGCTTTTGAGGTGTCAGATGTGACACAGA TTTCTAGATGGTCTTTCTTGAATACTGACAGAAATGTCCTCAAGAGAGGATTATATTCTTGAACCATTTTGTATTGATAGGTGGGATGGG CTAACATTTTTATGATTACTGAATAAACAAAAAATGAAATTTTCAAATATGCTTTTTTATTACTGTGCTTAGAACAAATTTTAAAATGTG ACTTAAGTTGCTTAAATTCCAAGGCTAATTTCATTCAACAAACCATGATTTTGTCATCCTTTAAGTAAGTTTCTCACTTTTCAAAACTCA TGTATCAACACTGACTGACTTGCTTTTTTTTTTTTTTTTTTTTTTTTTAGGCAGCTTTTATGACAGCAACTTGCTCCATGTAGTTTTGGC TTATTTAAAAACTATACTAACTTTGGATTTTTCTGTTACAAGACTTTTAACAATCTGTATTTCGTGATTGTGAACTCGTATTCATTTTAC TTTTCAAAAACAGACTTAACATACCATTCCCTCACCTAGCAGTACTACCACAATAATGCTATCATGGTGCCAGGGAATTACAATTGTAAT >In-frame_ENST00000277817_ENST00000388768_TCGA-BR-8373-01A_HERC4_chr10_69785303_-_RUFY2_chr10_70136729_length(amino acids)=397AA_start in transcript=495_stop in transcript=1688 MCVDSLVRICSGLSYGRIRNIKSLSDIQIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGTDCKKQTSPQLLKSLLGIPFMQVAAGGA HSFVLTLSGAIFGWGRNKFGQLGLNDENDRYVPNLLKSLRSQKIVYICCGEDHTAALTKEGGVFTFGAGGYGQLGHNSTSHEINPRKVFE LMGSIVTEIACGRLQQAEKAQMEAEDEDEKYLQECLSKSDSLQKQISQKEKQLVQLETDLKIEKEWRQTLQEDLQKEKDALSHLRNETQQ IISLKKEFLNLQDENQQLKKIYHEQEQALQELGNKLSESKLKIEDIKEANKALQGLVWLKDKEATHCKLCEKEFSLSKRKHHCRNCGEIF -------------------------------------------------------------- >In-frame_ENST00000277817_ENST00000602465_TCGA-BR-8373-01A_HERC4_chr10_69785303_-_RUFY2_chr10_70136729_length(transcript)=3630nt_BP=1073nt GTGGTTAGTAGCGATAAATGCTCTGAAGGAAAAAACATACAGTACTGTGAGAATGTAGTATTTTGAAATGTTTCATTTGCAAAATTGTAC TTGATACTCAGAATAGTGTTTTTTTTTCCTAAAATACTTAATATGCTGAACAGGTCAATGTATCATCTGCCTAGTATGCATAAACAATAA CAGTAAATGTTTAGTAATTTGAGCACAGTTGGGTATGTTCATGTATTTTTTATTCCTTACTCTGTTTGCATTGCCAGTGTTTGATTTTGC TATTTCAAAGAAATGGCATTTTGTTGAGTTTGAAAATTTGAAGGTGCATTGGATCCTGCTAATTTGTTGGATTCTGCTAAATTGTAGCAG TACAGCTCTCAGGTTTTGTAGTTAAGAGCATAACTTCACTAAATAAAAATATTTTTAATACAATAATATGGAATCAGAGTAACTCTCCTT TTTCCTGCTCAAACTTTGATTTGCTGAAGCTGCTTCCCGAAAATCATGTGTGTCGACTCTCTGGTCAGAATTTGCTCCGGACTCTCTTAT GGCAGAATCAGAAATATTAAAAGTTTGTCAGATATCCAGATTGTACAGGTTGCTTGTGGTTACTATCATTCACTTGCACTTTCTAAAGCA AGTGAAGTCTTCTGTTGGGGACAGAATAAATATGGCCAATTGGGTTTAGGTACTGACTGTAAAAAGCAAACTTCACCGCAGCTGCTTAAG TCTTTGCTTGGAATCCCTTTCATGCAAGTTGCAGCAGGAGGAGCCCATAGTTTTGTACTCACCCTTTCTGGAGCTATCTTTGGATGGGGA CGCAACAAGTTTGGTCAGCTAGGTCTTAATGATGAAAATGATAGGTATGTTCCTAATTTACTAAAGTCACTAAGATCTCAGAAAATAGTT TATATTTGTTGTGGAGAAGATCATACTGCTGCTCTAACCAAGGAAGGTGGAGTGTTTACTTTTGGAGCTGGAGGGTATGGTCAGTTGGGC CATAATTCTACCAGTCATGAAATAAACCCAAGGAAAGTTTTTGAACTTATGGGAAGCATTGTCACTGAGATTGCTTGTGGACGATTGCAG CAAGCAGAGAAGGCGCAAATGGAAGCTGAAGATGAGGATGAGAAATATCTACAAGAATGTCTCAGTAAATCTGATAGTCTGCAGAAACAA ATCTCCCAAAAGGAGAAACAGCTGGTGCAACTGGAAACTGACTTGAAGATTGAGAAGGAATGGAGGCAGACTTTGCAGGAAGATCTTCAA AAGGAGAAAGATGCCTTATCTCATCTTAGAAATGAGACTCAACAAATCATTAGTCTTAAAAAAGAGTTCCTTAACCTCCAGGATGAAAAT CAGCAGTTGAAAAAAATATATCATGAACAAGAGCAAGCTCTTCAAGAACTCGGCAACAAGCTTAGCGAATCAAAACTTAAAATTGAAGAC ATAAAAGAAGCCAACAAAGCATTGCAGGGACTGGTTTGGCTGAAAGACAAAGAAGCAACACATTGTAAACTTTGTGAAAAGGAATTCTCA CTCTCTAAGAGAAAGCACCACTGTAGAAATTGTGGGGAAATTTTCTGTAATGCCTGCTCTGACAACGAACTACCTTTGCCTTCTTCACCA AAACCAGTACGGGTTTGTGATTCCTGTCATGCACTGCTCATTCAGAGATGCTCATCTAACTTGCCCTGAGACTCCAGAACTAAATCCTTA TGTATGAAATTACCTACAATGAATGTTATGATGTTGTATACAAAGGTAACCAGACAGCTCTCCTTAAGCGGCTTTCGGTCAGTATTTGGT ACCAGTTTATCTTCTACATATTCAGCTCATGGAAATTACAAGTTATATATTTCCTTCCCCATTGTTTTTCAAAATGTATTTTCAACAGAG CATGCTTAAAAATCATGTAACTCATTAAAAGGCCAGAGAGCAGAGCTAACACAACTTGCCTTATCTTGTAAAGGCCTTAAAAATAAGGCT TCAGATTGTTTTTTTCTTCTGAATTCTGTCAATTTGGTATTTGATGGTGCCTGCAGTTCTCTTAATGCACTTTAAAGCTTCACAGTTCTG AAACTGGAAACGCATAAAACTTTTAAAATTATTAATATTCTAATTCAACAGATTTTCATTATCTTTGTAAGATTTCAACTATATTTATTT GCCCTTTCTTCTCCCCCTCTCCCTTTGCCTCTTGCATTAGACAGGGCCAATATTTTGTCCTACAAAATTTCCTCTTGGTCTCTTTAAAAA TCAGTTATTGTCGTGCTTGCTGAAGATTTTCAGCTACAGTGGATTAAATTAAAGGGGGCATTATTTGGCCTCGGCCTCTACTTTTTTCCT TTTAATCTTGAAAGGAAGTTACATATAACCATCTTTCTTTTCCTGATTTATAAATCTTCCCATATGCTGTTTCATTAAATTGCTGTTTTT TTAAGGGGTGACTCAGACCCCAATTCAAAGATGAAAACACAAATCCTTCCCCAGAAAAAAAAGTATGTAATAGTAGGGGATGTTACAGGC TCCTTATAAAGGTCCTCTCCTCTAAGCATTAAAAGTGAGAAAAAAATCAGGACTTTGCTTTGGTAATGTATTAGAGTTCAGTTCAAAAAA TTTTGTATTAACATTTTCATTGGAGTAAATTTTAGGAAGTATCACATTGTAGTGGCCTACCTGTATACATCCACAGTAAAATTTCACCAT GTCCATTGAGCACCTCTATGCCAAGGGTGTTGAGATGATGAAATATACACTTGACCTATTTCTTTTTTTTTCGAGATGGAGTTTCACTCT TGTTGCCTAGGCTGGAGTGCAATGGCACGATCTCCACCTCCTGGGTTCAAGCAATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGATTAC AGGCGTGAGCCACAGCACCTGGCCAGTACACTTGACCTATTTCAAGCTGACTCAATGAACACTAATCCAAGTTATATTGCTTATGGCATA CTAAGAATTTAACTTGTATAAATTACCTCTGAATAGTTACATAAACACTATCACCATTCAGTATCCTATTTTTTACATTAATTTTTAACC ATGCACTTTAAGTTTGTGAGCCTATAAAAAATACATAGAAAATTTATGGATTAAGAGCATTATATTTAGTGGTTAATCCTAGGTACCTCC CTGCCTACAAAGGAGTTCTTATTAATACTGCAGGATCTTTTCTTCATGAATATATGCTTCCATGAAATTTAAATTTTTCTGAATAGCCTA AGTATGAAATGAATATTTTACTTGAAGATCTATTTTTTCCAAAACCCGTAAATTTCCAGTCAGCTTTTGAGGTGTCAGATGTGACACAGA TTTCTAGATGGTCTTTCTTGAATACTGACAGAAATGTCCTCAAGAGAGGATTATATTCTTGAACCATTTTGTATTGATAGGTGGGATGGG CTAACATTTTTATGATTACTGAATAAACAAAAAATGAAATTTTCAAATATGCTTTTTTATTACTGTGCTTAGAACAAATTTTAAAATGTG ACTTAAGTTGCTTAAATTCCAAGGCTAATTTCATTCAACAAACCATGATTTTGTCATCCTTTAAGTAAGTTTCTCACTTTTCAAAACTCA >In-frame_ENST00000277817_ENST00000602465_TCGA-BR-8373-01A_HERC4_chr10_69785303_-_RUFY2_chr10_70136729_length(amino acids)=397AA_start in transcript=495_stop in transcript=1688 MCVDSLVRICSGLSYGRIRNIKSLSDIQIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGTDCKKQTSPQLLKSLLGIPFMQVAAGGA HSFVLTLSGAIFGWGRNKFGQLGLNDENDRYVPNLLKSLRSQKIVYICCGEDHTAALTKEGGVFTFGAGGYGQLGHNSTSHEINPRKVFE LMGSIVTEIACGRLQQAEKAQMEAEDEDEKYLQECLSKSDSLQKQISQKEKQLVQLETDLKIEKEWRQTLQEDLQKEKDALSHLRNETQQ IISLKKEFLNLQDENQQLKKIYHEQEQALQELGNKLSESKLKIEDIKEANKALQGLVWLKDKEATHCKLCEKEFSLSKRKHHCRNCGEIF -------------------------------------------------------------- |
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Fusion Gene PPI Analysis for HERC4-RUFY2 |
Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in |
Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
Hgene | Hgene's interactors | Tgene | Tgene's interactors |
- Retained PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
- Lost PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
- Retained PPIs, but lost function due to frame-shift fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Related Drugs for HERC4-RUFY2 |
Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.8 2021-05-08) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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Related Diseases for HERC4-RUFY2 |
Diseases associated with fusion partners. (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |