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Center for Computational Systems Medicine
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Fusion Gene Summary

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Fusion Gene ORF analysis

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Fusion Genomic Features

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Fusion Protein Features

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Fusion Gene Sequence

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Fusion Gene PPI analysis

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Related Drugs

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Related Diseases

Fusion gene:HOXB3-ALDOA (FusionGDB2 ID:37269)

Fusion Gene Summary for HOXB3-ALDOA

check button Fusion gene summary
Fusion gene informationFusion gene name: HOXB3-ALDOA
Fusion gene ID: 37269
HgeneTgene
Gene symbol

HOXB3

ALDOA

Gene ID

3213

112694756

Gene namehomeobox B3uncharaterized LOC112694756
SynonymsHOX2|HOX2G|Hox-2.7ALDA|ALDOA
Cytomap

17q21.32

-

Type of geneprotein-codingprotein-coding
Descriptionhomeobox protein Hox-B3homeo box 2Ghomeobox protein Hox-2.7homeobox protein Hox-2Guncharaterized LOC112694756Fructose-bisphosphate aldolase ALung cancer antigen NY-LU-1Muscle-type aldolase
Modification date2020031320200303
UniProtAcc

P14651

P04075

Ensembl transtripts involved in fusion geneENST00000472863, ENST00000498678, 
ENST00000460160, ENST00000476342, 
ENST00000552000, ENST00000470495, 
ENST00000311626, ENST00000490677, 
ENST00000485909, ENST00000489475, 
ENST00000465120, 
ENST00000338110, 
ENST00000395248, ENST00000575627, 
ENST00000566897, ENST00000569545, 
ENST00000563060, ENST00000412304, 
ENST00000564546, ENST00000564595, 
ENST00000569798, ENST00000395240, 
Fusion gene scores* DoF score9 X 6 X 6=32416 X 16 X 6=1536
# samples 1018
** MAII scorelog2(10/324*10)=-1.6959938131099
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
log2(18/1536*10)=-3.09310940439148
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
Context

PubMed: HOXB3 [Title/Abstract] AND ALDOA [Title/Abstract] AND fusion [Title/Abstract]

Most frequent breakpointHOXB3(46656333)-ALDOA(30081178), # samples:1
Anticipated loss of major functional domain due to fusion event.
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
HgeneHOXB3

GO:0045944

positive regulation of transcription by RNA polymerase II

9556594


check buttonFusion gene breakpoints across HOXB3 (5'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.

check buttonFusion gene breakpoints across ALDOA (3'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.

check button Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0)
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
SourceDiseaseSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
ChiTaRS5.0N/ABP428788HOXB3chr17

46656333

+ALDOAchr16

30081178

+


Top

Fusion Gene ORF analysis for HOXB3-ALDOA

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
intron-3CDSENST00000472863ENST00000338110HOXB3chr17

46656333

+ALDOAchr16

30081178

+
intron-3CDSENST00000472863ENST00000395248HOXB3chr17

46656333

+ALDOAchr16

30081178

+
intron-intronENST00000472863ENST00000575627HOXB3chr17

46656333

+ALDOAchr16

30081178

+
intron-intronENST00000472863ENST00000566897HOXB3chr17

46656333

+ALDOAchr16

30081178

+
intron-intronENST00000472863ENST00000569545HOXB3chr17

46656333

+ALDOAchr16

30081178

+
intron-intronENST00000472863ENST00000563060HOXB3chr17

46656333

+ALDOAchr16

30081178

+
intron-intronENST00000472863ENST00000412304HOXB3chr17

46656333

+ALDOAchr16

30081178

+
intron-intronENST00000472863ENST00000564546HOXB3chr17

46656333

+ALDOAchr16

30081178

+
intron-intronENST00000472863ENST00000564595HOXB3chr17

46656333

+ALDOAchr16

30081178

+
intron-intronENST00000472863ENST00000569798HOXB3chr17

46656333

+ALDOAchr16

30081178

+
intron-intronENST00000472863ENST00000395240HOXB3chr17

46656333

+ALDOAchr16

30081178

+
intron-3CDSENST00000498678ENST00000338110HOXB3chr17

46656333

+ALDOAchr16

30081178

+
intron-3CDSENST00000498678ENST00000395248HOXB3chr17

46656333

+ALDOAchr16

30081178

+
intron-intronENST00000498678ENST00000575627HOXB3chr17

46656333

+ALDOAchr16

30081178

+
intron-intronENST00000498678ENST00000566897HOXB3chr17

46656333

+ALDOAchr16

30081178

+
intron-intronENST00000498678ENST00000569545HOXB3chr17

46656333

+ALDOAchr16

30081178

+
intron-intronENST00000498678ENST00000563060HOXB3chr17

46656333

+ALDOAchr16

30081178

+
intron-intronENST00000498678ENST00000412304HOXB3chr17

46656333

+ALDOAchr16

30081178

+
intron-intronENST00000498678ENST00000564546HOXB3chr17

46656333

+ALDOAchr16

30081178

+
intron-intronENST00000498678ENST00000564595HOXB3chr17

46656333

+ALDOAchr16

30081178

+
intron-intronENST00000498678ENST00000569798HOXB3chr17

46656333

+ALDOAchr16

30081178

+
intron-intronENST00000498678ENST00000395240HOXB3chr17

46656333

+ALDOAchr16

30081178

+
intron-3CDSENST00000460160ENST00000338110HOXB3chr17

46656333

+ALDOAchr16

30081178

+
intron-3CDSENST00000460160ENST00000395248HOXB3chr17

46656333

+ALDOAchr16

30081178

+
intron-intronENST00000460160ENST00000575627HOXB3chr17

46656333

+ALDOAchr16

30081178

+
intron-intronENST00000460160ENST00000566897HOXB3chr17

46656333

+ALDOAchr16

30081178

+
intron-intronENST00000460160ENST00000569545HOXB3chr17

46656333

+ALDOAchr16

30081178

+
intron-intronENST00000460160ENST00000563060HOXB3chr17

46656333

+ALDOAchr16

30081178

+
intron-intronENST00000460160ENST00000412304HOXB3chr17

46656333

+ALDOAchr16

30081178

+
intron-intronENST00000460160ENST00000564546HOXB3chr17

46656333

+ALDOAchr16

30081178

+
intron-intronENST00000460160ENST00000564595HOXB3chr17

46656333

+ALDOAchr16

30081178

+
intron-intronENST00000460160ENST00000569798HOXB3chr17

46656333

+ALDOAchr16

30081178

+
intron-intronENST00000460160ENST00000395240HOXB3chr17

46656333

+ALDOAchr16

30081178

+
intron-3CDSENST00000476342ENST00000338110HOXB3chr17

46656333

+ALDOAchr16

30081178

+
intron-3CDSENST00000476342ENST00000395248HOXB3chr17

46656333

+ALDOAchr16

30081178

+
intron-intronENST00000476342ENST00000575627HOXB3chr17

46656333

+ALDOAchr16

30081178

+
intron-intronENST00000476342ENST00000566897HOXB3chr17

46656333

+ALDOAchr16

30081178

+
intron-intronENST00000476342ENST00000569545HOXB3chr17

46656333

+ALDOAchr16

30081178

+
intron-intronENST00000476342ENST00000563060HOXB3chr17

46656333

+ALDOAchr16

30081178

+
intron-intronENST00000476342ENST00000412304HOXB3chr17

46656333

+ALDOAchr16

30081178

+
intron-intronENST00000476342ENST00000564546HOXB3chr17

46656333

+ALDOAchr16

30081178

+
intron-intronENST00000476342ENST00000564595HOXB3chr17

46656333

+ALDOAchr16

30081178

+
intron-intronENST00000476342ENST00000569798HOXB3chr17

46656333

+ALDOAchr16

30081178

+
intron-intronENST00000476342ENST00000395240HOXB3chr17

46656333

+ALDOAchr16

30081178

+
intron-3CDSENST00000552000ENST00000338110HOXB3chr17

46656333

+ALDOAchr16

30081178

+
intron-3CDSENST00000552000ENST00000395248HOXB3chr17

46656333

+ALDOAchr16

30081178

+
intron-intronENST00000552000ENST00000575627HOXB3chr17

46656333

+ALDOAchr16

30081178

+
intron-intronENST00000552000ENST00000566897HOXB3chr17

46656333

+ALDOAchr16

30081178

+
intron-intronENST00000552000ENST00000569545HOXB3chr17

46656333

+ALDOAchr16

30081178

+
intron-intronENST00000552000ENST00000563060HOXB3chr17

46656333

+ALDOAchr16

30081178

+
intron-intronENST00000552000ENST00000412304HOXB3chr17

46656333

+ALDOAchr16

30081178

+
intron-intronENST00000552000ENST00000564546HOXB3chr17

46656333

+ALDOAchr16

30081178

+
intron-intronENST00000552000ENST00000564595HOXB3chr17

46656333

+ALDOAchr16

30081178

+
intron-intronENST00000552000ENST00000569798HOXB3chr17

46656333

+ALDOAchr16

30081178

+
intron-intronENST00000552000ENST00000395240HOXB3chr17

46656333

+ALDOAchr16

30081178

+
intron-3CDSENST00000470495ENST00000338110HOXB3chr17

46656333

+ALDOAchr16

30081178

+
intron-3CDSENST00000470495ENST00000395248HOXB3chr17

46656333

+ALDOAchr16

30081178

+
intron-intronENST00000470495ENST00000575627HOXB3chr17

46656333

+ALDOAchr16

30081178

+
intron-intronENST00000470495ENST00000566897HOXB3chr17

46656333

+ALDOAchr16

30081178

+
intron-intronENST00000470495ENST00000569545HOXB3chr17

46656333

+ALDOAchr16

30081178

+
intron-intronENST00000470495ENST00000563060HOXB3chr17

46656333

+ALDOAchr16

30081178

+
intron-intronENST00000470495ENST00000412304HOXB3chr17

46656333

+ALDOAchr16

30081178

+
intron-intronENST00000470495ENST00000564546HOXB3chr17

46656333

+ALDOAchr16

30081178

+
intron-intronENST00000470495ENST00000564595HOXB3chr17

46656333

+ALDOAchr16

30081178

+
intron-intronENST00000470495ENST00000569798HOXB3chr17

46656333

+ALDOAchr16

30081178

+
intron-intronENST00000470495ENST00000395240HOXB3chr17

46656333

+ALDOAchr16

30081178

+
intron-3CDSENST00000311626ENST00000338110HOXB3chr17

46656333

+ALDOAchr16

30081178

+
intron-3CDSENST00000311626ENST00000395248HOXB3chr17

46656333

+ALDOAchr16

30081178

+
intron-intronENST00000311626ENST00000575627HOXB3chr17

46656333

+ALDOAchr16

30081178

+
intron-intronENST00000311626ENST00000566897HOXB3chr17

46656333

+ALDOAchr16

30081178

+
intron-intronENST00000311626ENST00000569545HOXB3chr17

46656333

+ALDOAchr16

30081178

+
intron-intronENST00000311626ENST00000563060HOXB3chr17

46656333

+ALDOAchr16

30081178

+
intron-intronENST00000311626ENST00000412304HOXB3chr17

46656333

+ALDOAchr16

30081178

+
intron-intronENST00000311626ENST00000564546HOXB3chr17

46656333

+ALDOAchr16

30081178

+
intron-intronENST00000311626ENST00000564595HOXB3chr17

46656333

+ALDOAchr16

30081178

+
intron-intronENST00000311626ENST00000569798HOXB3chr17

46656333

+ALDOAchr16

30081178

+
intron-intronENST00000311626ENST00000395240HOXB3chr17

46656333

+ALDOAchr16

30081178

+
intron-3CDSENST00000490677ENST00000338110HOXB3chr17

46656333

+ALDOAchr16

30081178

+
intron-3CDSENST00000490677ENST00000395248HOXB3chr17

46656333

+ALDOAchr16

30081178

+
intron-intronENST00000490677ENST00000575627HOXB3chr17

46656333

+ALDOAchr16

30081178

+
intron-intronENST00000490677ENST00000566897HOXB3chr17

46656333

+ALDOAchr16

30081178

+
intron-intronENST00000490677ENST00000569545HOXB3chr17

46656333

+ALDOAchr16

30081178

+
intron-intronENST00000490677ENST00000563060HOXB3chr17

46656333

+ALDOAchr16

30081178

+
intron-intronENST00000490677ENST00000412304HOXB3chr17

46656333

+ALDOAchr16

30081178

+
intron-intronENST00000490677ENST00000564546HOXB3chr17

46656333

+ALDOAchr16

30081178

+
intron-intronENST00000490677ENST00000564595HOXB3chr17

46656333

+ALDOAchr16

30081178

+
intron-intronENST00000490677ENST00000569798HOXB3chr17

46656333

+ALDOAchr16

30081178

+
intron-intronENST00000490677ENST00000395240HOXB3chr17

46656333

+ALDOAchr16

30081178

+
intron-3CDSENST00000485909ENST00000338110HOXB3chr17

46656333

+ALDOAchr16

30081178

+
intron-3CDSENST00000485909ENST00000395248HOXB3chr17

46656333

+ALDOAchr16

30081178

+
intron-intronENST00000485909ENST00000575627HOXB3chr17

46656333

+ALDOAchr16

30081178

+
intron-intronENST00000485909ENST00000566897HOXB3chr17

46656333

+ALDOAchr16

30081178

+
intron-intronENST00000485909ENST00000569545HOXB3chr17

46656333

+ALDOAchr16

30081178

+
intron-intronENST00000485909ENST00000563060HOXB3chr17

46656333

+ALDOAchr16

30081178

+
intron-intronENST00000485909ENST00000412304HOXB3chr17

46656333

+ALDOAchr16

30081178

+
intron-intronENST00000485909ENST00000564546HOXB3chr17

46656333

+ALDOAchr16

30081178

+
intron-intronENST00000485909ENST00000564595HOXB3chr17

46656333

+ALDOAchr16

30081178

+
intron-intronENST00000485909ENST00000569798HOXB3chr17

46656333

+ALDOAchr16

30081178

+
intron-intronENST00000485909ENST00000395240HOXB3chr17

46656333

+ALDOAchr16

30081178

+
intron-3CDSENST00000489475ENST00000338110HOXB3chr17

46656333

+ALDOAchr16

30081178

+
intron-3CDSENST00000489475ENST00000395248HOXB3chr17

46656333

+ALDOAchr16

30081178

+
intron-intronENST00000489475ENST00000575627HOXB3chr17

46656333

+ALDOAchr16

30081178

+
intron-intronENST00000489475ENST00000566897HOXB3chr17

46656333

+ALDOAchr16

30081178

+
intron-intronENST00000489475ENST00000569545HOXB3chr17

46656333

+ALDOAchr16

30081178

+
intron-intronENST00000489475ENST00000563060HOXB3chr17

46656333

+ALDOAchr16

30081178

+
intron-intronENST00000489475ENST00000412304HOXB3chr17

46656333

+ALDOAchr16

30081178

+
intron-intronENST00000489475ENST00000564546HOXB3chr17

46656333

+ALDOAchr16

30081178

+
intron-intronENST00000489475ENST00000564595HOXB3chr17

46656333

+ALDOAchr16

30081178

+
intron-intronENST00000489475ENST00000569798HOXB3chr17

46656333

+ALDOAchr16

30081178

+
intron-intronENST00000489475ENST00000395240HOXB3chr17

46656333

+ALDOAchr16

30081178

+
intron-3CDSENST00000465120ENST00000338110HOXB3chr17

46656333

+ALDOAchr16

30081178

+
intron-3CDSENST00000465120ENST00000395248HOXB3chr17

46656333

+ALDOAchr16

30081178

+
intron-intronENST00000465120ENST00000575627HOXB3chr17

46656333

+ALDOAchr16

30081178

+
intron-intronENST00000465120ENST00000566897HOXB3chr17

46656333

+ALDOAchr16

30081178

+
intron-intronENST00000465120ENST00000569545HOXB3chr17

46656333

+ALDOAchr16

30081178

+
intron-intronENST00000465120ENST00000563060HOXB3chr17

46656333

+ALDOAchr16

30081178

+
intron-intronENST00000465120ENST00000412304HOXB3chr17

46656333

+ALDOAchr16

30081178

+
intron-intronENST00000465120ENST00000564546HOXB3chr17

46656333

+ALDOAchr16

30081178

+
intron-intronENST00000465120ENST00000564595HOXB3chr17

46656333

+ALDOAchr16

30081178

+
intron-intronENST00000465120ENST00000569798HOXB3chr17

46656333

+ALDOAchr16

30081178

+
intron-intronENST00000465120ENST00000395240HOXB3chr17

46656333

+ALDOAchr16

30081178

+

check buttonORFfinder result based on the fusion transcript sequence of in-frame fusion genes.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandSeq length
(transcript)
BP loci
(transcript)
Predicted start
(transcript)
Predicted stop
(transcript)
Seq length
(amino acids)

check buttonDeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandNo-coding scoreCoding score

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Fusion Genomic Features for HOXB3-ALDOA


check buttonFusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints.
HgeneHchrHbpHstrandTgeneTchrTbpTstrand1-pp (fusion gene breakpoint)

check buttonDistribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page.

check buttonDistribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page.

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Fusion Protein Features for HOXB3-ALDOA


check button Go to

FGviewer for the breakpoints of :-:

.
- FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels.
FGviewer

check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
HOXB3

P14651

ALDOA

P04075

FUNCTION: Sequence-specific transcription factor which is part of a developmental regulatory system that provides cells with specific positional identities on the anterior-posterior axis.FUNCTION: Plays a key role in glycolysis and gluconeogenesis. In addition, may also function as scaffolding protein (By similarity). {ECO:0000250}.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page


* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note


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Fusion Gene Sequence for HOXB3-ALDOA


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones.

Top

Fusion Gene PPI Analysis for HOXB3-ALDOA


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page.


check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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Related Drugs for HOXB3-ALDOA


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.8 2021-05-08)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status
TgeneALDOAP04075DB14548Zinc sulfate, unspecified formLigandSmall moleculeApproved|Experimental
TgeneALDOAP04075DB14548Zinc sulfate, unspecified formLigandSmall moleculeApproved|Experimental
TgeneALDOAP04075DB01593ZincSmall moleculeApproved|Investigational
TgeneALDOAP04075DB01593ZincSmall moleculeApproved|Investigational
TgeneALDOAP04075DB14487Zinc acetateSmall moleculeApproved|Investigational
TgeneALDOAP04075DB14487Zinc acetateSmall moleculeApproved|Investigational
TgeneALDOAP04075DB14533Zinc chlorideLigandSmall moleculeApproved|Investigational
TgeneALDOAP04075DB14533Zinc chlorideLigandSmall moleculeApproved|Investigational

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Related Diseases for HOXB3-ALDOA


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource
HgeneHOXB3C0019284Diaphragmatic Hernia1CTD_human
TgeneALDOAC0272066Glycogen Storage Disease XII7CTD_human;GENOMICS_ENGLAND;ORPHANET;UNIPROT
TgeneALDOAC0017919Glycogen Storage Disease3GENOMICS_ENGLAND
TgeneALDOAC0520572Enzymopathy2GENOMICS_ENGLAND
TgeneALDOAC0006142Malignant neoplasm of breast1CTD_human
TgeneALDOAC0027626Neoplasm Invasiveness1CTD_human
TgeneALDOAC0027627Neoplasm Metastasis1CTD_human
TgeneALDOAC0151744Myocardial Ischemia1CTD_human
TgeneALDOAC0152013Adenocarcinoma of lung (disorder)1CTD_human
TgeneALDOAC0678222Breast Carcinoma1CTD_human
TgeneALDOAC1257931Mammary Neoplasms, Human1CTD_human
TgeneALDOAC1458155Mammary Neoplasms1CTD_human
TgeneALDOAC4704874Mammary Carcinoma, Human1CTD_human