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Fusion Gene Summary | |
Fusion Gene ORF analysis | |
Fusion Genomic Features | |
Fusion Protein Features | |
Fusion Gene Sequence | |
Fusion Gene PPI analysis | |
Related Drugs | |
Related Diseases |
Fusion gene:ALCAM-EIF2A (FusionGDB2 ID:3922) |
Fusion Gene Summary for ALCAM-EIF2A |
Fusion gene summary |
Fusion gene information | Fusion gene name: ALCAM-EIF2A | Fusion gene ID: 3922 | Hgene | Tgene | Gene symbol | ALCAM | EIF2A | Gene ID | 214 | 83939 |
Gene name | activated leukocyte cell adhesion molecule | eukaryotic translation initiation factor 2A | |
Synonyms | CD166|MEMD | CDA02|EIF-2A|MST089|MSTP004|MSTP089 | |
Cytomap | 3q13.11 | 3q25.1 | |
Type of gene | protein-coding | protein-coding | |
Description | CD166 antigen | eukaryotic translation initiation factor 2A65 kDa eukaryotic translation initiation factor 2Aeukaryotic translation initiation factor 2A, 65kDa | |
Modification date | 20200320 | 20200313 | |
UniProtAcc | Q13740 | Q9P2K8 | |
Ensembl transtripts involved in fusion gene | ENST00000306107, ENST00000472644, ENST00000481337, ENST00000486979, ENST00000389927, | ENST00000487799, ENST00000460851, ENST00000406576, ENST00000273435, ENST00000383043, ENST00000482471, | |
Fusion gene scores | * DoF score | 15 X 13 X 6=1170 | 3 X 3 X 3=27 |
# samples | 17 | 4 | |
** MAII score | log2(17/1170*10)=-2.78290187833307 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(4/27*10)=0.567040592723894 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | |
Context | PubMed: ALCAM [Title/Abstract] AND EIF2A [Title/Abstract] AND fusion [Title/Abstract] | ||
Most frequent breakpoint | ALCAM(105086325)-EIF2A(150270143), # samples:3 | ||
Anticipated loss of major functional domain due to fusion event. |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
Partner | Gene | GO ID | GO term | PubMed ID |
Fusion gene breakpoints across ALCAM (5'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
Fusion gene breakpoints across EIF2A (3'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Source | Disease | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
ChimerDB4 | BRCA | TCGA-C8-A12L-01A | ALCAM | chr3 | 105086325 | + | EIF2A | chr3 | 150270143 | + |
ChimerDB4 | BRCA | TCGA-C8-A12L | ALCAM | chr3 | 105086325 | + | EIF2A | chr3 | 150270142 | + |
ChimerDB4 | BRCA | TCGA-C8-A12L-01A | ALCAM | chr3 | 105086325 | + | EIF2A | chr3 | 150270143 | + |
ChimerDB4 | BRCA | TCGA-C8-A12L-01A | ALCAM | chr3 | 105086325 | - | EIF2A | chr3 | 150270143 | + |
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Fusion Gene ORF analysis for ALCAM-EIF2A |
Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
In-frame | ENST00000306107 | ENST00000487799 | ALCAM | chr3 | 105086325 | + | EIF2A | chr3 | 150270143 | + |
In-frame | ENST00000306107 | ENST00000460851 | ALCAM | chr3 | 105086325 | + | EIF2A | chr3 | 150270143 | + |
In-frame | ENST00000306107 | ENST00000406576 | ALCAM | chr3 | 105086325 | + | EIF2A | chr3 | 150270143 | + |
In-frame | ENST00000306107 | ENST00000273435 | ALCAM | chr3 | 105086325 | + | EIF2A | chr3 | 150270143 | + |
5CDS-intron | ENST00000306107 | ENST00000383043 | ALCAM | chr3 | 105086325 | + | EIF2A | chr3 | 150270143 | + |
5CDS-intron | ENST00000306107 | ENST00000482471 | ALCAM | chr3 | 105086325 | + | EIF2A | chr3 | 150270143 | + |
In-frame | ENST00000472644 | ENST00000487799 | ALCAM | chr3 | 105086325 | + | EIF2A | chr3 | 150270143 | + |
In-frame | ENST00000472644 | ENST00000460851 | ALCAM | chr3 | 105086325 | + | EIF2A | chr3 | 150270143 | + |
In-frame | ENST00000472644 | ENST00000406576 | ALCAM | chr3 | 105086325 | + | EIF2A | chr3 | 150270143 | + |
In-frame | ENST00000472644 | ENST00000273435 | ALCAM | chr3 | 105086325 | + | EIF2A | chr3 | 150270143 | + |
5CDS-intron | ENST00000472644 | ENST00000383043 | ALCAM | chr3 | 105086325 | + | EIF2A | chr3 | 150270143 | + |
5CDS-intron | ENST00000472644 | ENST00000482471 | ALCAM | chr3 | 105086325 | + | EIF2A | chr3 | 150270143 | + |
intron-3CDS | ENST00000481337 | ENST00000487799 | ALCAM | chr3 | 105086325 | + | EIF2A | chr3 | 150270143 | + |
intron-3CDS | ENST00000481337 | ENST00000460851 | ALCAM | chr3 | 105086325 | + | EIF2A | chr3 | 150270143 | + |
intron-3CDS | ENST00000481337 | ENST00000406576 | ALCAM | chr3 | 105086325 | + | EIF2A | chr3 | 150270143 | + |
intron-3CDS | ENST00000481337 | ENST00000273435 | ALCAM | chr3 | 105086325 | + | EIF2A | chr3 | 150270143 | + |
intron-intron | ENST00000481337 | ENST00000383043 | ALCAM | chr3 | 105086325 | + | EIF2A | chr3 | 150270143 | + |
intron-intron | ENST00000481337 | ENST00000482471 | ALCAM | chr3 | 105086325 | + | EIF2A | chr3 | 150270143 | + |
intron-3CDS | ENST00000486979 | ENST00000487799 | ALCAM | chr3 | 105086325 | + | EIF2A | chr3 | 150270143 | + |
intron-3CDS | ENST00000486979 | ENST00000460851 | ALCAM | chr3 | 105086325 | + | EIF2A | chr3 | 150270143 | + |
intron-3CDS | ENST00000486979 | ENST00000406576 | ALCAM | chr3 | 105086325 | + | EIF2A | chr3 | 150270143 | + |
intron-3CDS | ENST00000486979 | ENST00000273435 | ALCAM | chr3 | 105086325 | + | EIF2A | chr3 | 150270143 | + |
intron-intron | ENST00000486979 | ENST00000383043 | ALCAM | chr3 | 105086325 | + | EIF2A | chr3 | 150270143 | + |
intron-intron | ENST00000486979 | ENST00000482471 | ALCAM | chr3 | 105086325 | + | EIF2A | chr3 | 150270143 | + |
intron-3CDS | ENST00000389927 | ENST00000487799 | ALCAM | chr3 | 105086325 | + | EIF2A | chr3 | 150270143 | + |
intron-3CDS | ENST00000389927 | ENST00000460851 | ALCAM | chr3 | 105086325 | + | EIF2A | chr3 | 150270143 | + |
intron-3CDS | ENST00000389927 | ENST00000406576 | ALCAM | chr3 | 105086325 | + | EIF2A | chr3 | 150270143 | + |
intron-3CDS | ENST00000389927 | ENST00000273435 | ALCAM | chr3 | 105086325 | + | EIF2A | chr3 | 150270143 | + |
intron-intron | ENST00000389927 | ENST00000383043 | ALCAM | chr3 | 105086325 | + | EIF2A | chr3 | 150270143 | + |
intron-intron | ENST00000389927 | ENST00000482471 | ALCAM | chr3 | 105086325 | + | EIF2A | chr3 | 150270143 | + |
In-frame | ENST00000306107 | ENST00000487799 | ALCAM | chr3 | 105086325 | + | EIF2A | chr3 | 150270142 | + |
In-frame | ENST00000306107 | ENST00000460851 | ALCAM | chr3 | 105086325 | + | EIF2A | chr3 | 150270142 | + |
In-frame | ENST00000306107 | ENST00000406576 | ALCAM | chr3 | 105086325 | + | EIF2A | chr3 | 150270142 | + |
In-frame | ENST00000306107 | ENST00000273435 | ALCAM | chr3 | 105086325 | + | EIF2A | chr3 | 150270142 | + |
5CDS-intron | ENST00000306107 | ENST00000383043 | ALCAM | chr3 | 105086325 | + | EIF2A | chr3 | 150270142 | + |
5CDS-intron | ENST00000306107 | ENST00000482471 | ALCAM | chr3 | 105086325 | + | EIF2A | chr3 | 150270142 | + |
In-frame | ENST00000472644 | ENST00000487799 | ALCAM | chr3 | 105086325 | + | EIF2A | chr3 | 150270142 | + |
In-frame | ENST00000472644 | ENST00000460851 | ALCAM | chr3 | 105086325 | + | EIF2A | chr3 | 150270142 | + |
In-frame | ENST00000472644 | ENST00000406576 | ALCAM | chr3 | 105086325 | + | EIF2A | chr3 | 150270142 | + |
In-frame | ENST00000472644 | ENST00000273435 | ALCAM | chr3 | 105086325 | + | EIF2A | chr3 | 150270142 | + |
5CDS-intron | ENST00000472644 | ENST00000383043 | ALCAM | chr3 | 105086325 | + | EIF2A | chr3 | 150270142 | + |
5CDS-intron | ENST00000472644 | ENST00000482471 | ALCAM | chr3 | 105086325 | + | EIF2A | chr3 | 150270142 | + |
intron-3CDS | ENST00000481337 | ENST00000487799 | ALCAM | chr3 | 105086325 | + | EIF2A | chr3 | 150270142 | + |
intron-3CDS | ENST00000481337 | ENST00000460851 | ALCAM | chr3 | 105086325 | + | EIF2A | chr3 | 150270142 | + |
intron-3CDS | ENST00000481337 | ENST00000406576 | ALCAM | chr3 | 105086325 | + | EIF2A | chr3 | 150270142 | + |
intron-3CDS | ENST00000481337 | ENST00000273435 | ALCAM | chr3 | 105086325 | + | EIF2A | chr3 | 150270142 | + |
intron-intron | ENST00000481337 | ENST00000383043 | ALCAM | chr3 | 105086325 | + | EIF2A | chr3 | 150270142 | + |
intron-intron | ENST00000481337 | ENST00000482471 | ALCAM | chr3 | 105086325 | + | EIF2A | chr3 | 150270142 | + |
intron-3CDS | ENST00000486979 | ENST00000487799 | ALCAM | chr3 | 105086325 | + | EIF2A | chr3 | 150270142 | + |
intron-3CDS | ENST00000486979 | ENST00000460851 | ALCAM | chr3 | 105086325 | + | EIF2A | chr3 | 150270142 | + |
intron-3CDS | ENST00000486979 | ENST00000406576 | ALCAM | chr3 | 105086325 | + | EIF2A | chr3 | 150270142 | + |
intron-3CDS | ENST00000486979 | ENST00000273435 | ALCAM | chr3 | 105086325 | + | EIF2A | chr3 | 150270142 | + |
intron-intron | ENST00000486979 | ENST00000383043 | ALCAM | chr3 | 105086325 | + | EIF2A | chr3 | 150270142 | + |
intron-intron | ENST00000486979 | ENST00000482471 | ALCAM | chr3 | 105086325 | + | EIF2A | chr3 | 150270142 | + |
intron-3CDS | ENST00000389927 | ENST00000487799 | ALCAM | chr3 | 105086325 | + | EIF2A | chr3 | 150270142 | + |
intron-3CDS | ENST00000389927 | ENST00000460851 | ALCAM | chr3 | 105086325 | + | EIF2A | chr3 | 150270142 | + |
intron-3CDS | ENST00000389927 | ENST00000406576 | ALCAM | chr3 | 105086325 | + | EIF2A | chr3 | 150270142 | + |
intron-3CDS | ENST00000389927 | ENST00000273435 | ALCAM | chr3 | 105086325 | + | EIF2A | chr3 | 150270142 | + |
intron-intron | ENST00000389927 | ENST00000383043 | ALCAM | chr3 | 105086325 | + | EIF2A | chr3 | 150270142 | + |
intron-intron | ENST00000389927 | ENST00000482471 | ALCAM | chr3 | 105086325 | + | EIF2A | chr3 | 150270142 | + |
ORFfinder result based on the fusion transcript sequence of in-frame fusion genes. |
Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | Seq length (transcript) | BP loci (transcript) | Predicted start (transcript) | Predicted stop (transcript) | Seq length (amino acids) |
ENST00000306107 | ALCAM | chr3 | 105086325 | + | ENST00000487799 | EIF2A | chr3 | 150270143 | + | 2340 | 573 | 392 | 2227 | 611 |
ENST00000306107 | ALCAM | chr3 | 105086325 | + | ENST00000460851 | EIF2A | chr3 | 150270143 | + | 2634 | 573 | 392 | 2302 | 636 |
ENST00000306107 | ALCAM | chr3 | 105086325 | + | ENST00000406576 | EIF2A | chr3 | 150270143 | + | 2324 | 573 | 392 | 2119 | 575 |
ENST00000306107 | ALCAM | chr3 | 105086325 | + | ENST00000273435 | EIF2A | chr3 | 150270143 | + | 2619 | 573 | 392 | 2287 | 631 |
ENST00000472644 | ALCAM | chr3 | 105086325 | + | ENST00000487799 | EIF2A | chr3 | 150270143 | + | 1906 | 139 | 66 | 1793 | 575 |
ENST00000472644 | ALCAM | chr3 | 105086325 | + | ENST00000460851 | EIF2A | chr3 | 150270143 | + | 2200 | 139 | 66 | 1868 | 600 |
ENST00000472644 | ALCAM | chr3 | 105086325 | + | ENST00000406576 | EIF2A | chr3 | 150270143 | + | 1890 | 139 | 66 | 1685 | 539 |
ENST00000472644 | ALCAM | chr3 | 105086325 | + | ENST00000273435 | EIF2A | chr3 | 150270143 | + | 2185 | 139 | 66 | 1853 | 595 |
ENST00000306107 | ALCAM | chr3 | 105086325 | + | ENST00000487799 | EIF2A | chr3 | 150270142 | + | 2340 | 573 | 392 | 2227 | 611 |
ENST00000306107 | ALCAM | chr3 | 105086325 | + | ENST00000460851 | EIF2A | chr3 | 150270142 | + | 2634 | 573 | 392 | 2302 | 636 |
ENST00000306107 | ALCAM | chr3 | 105086325 | + | ENST00000406576 | EIF2A | chr3 | 150270142 | + | 2324 | 573 | 392 | 2119 | 575 |
ENST00000306107 | ALCAM | chr3 | 105086325 | + | ENST00000273435 | EIF2A | chr3 | 150270142 | + | 2619 | 573 | 392 | 2287 | 631 |
ENST00000472644 | ALCAM | chr3 | 105086325 | + | ENST00000487799 | EIF2A | chr3 | 150270142 | + | 1906 | 139 | 66 | 1793 | 575 |
ENST00000472644 | ALCAM | chr3 | 105086325 | + | ENST00000460851 | EIF2A | chr3 | 150270142 | + | 2200 | 139 | 66 | 1868 | 600 |
ENST00000472644 | ALCAM | chr3 | 105086325 | + | ENST00000406576 | EIF2A | chr3 | 150270142 | + | 1890 | 139 | 66 | 1685 | 539 |
ENST00000472644 | ALCAM | chr3 | 105086325 | + | ENST00000273435 | EIF2A | chr3 | 150270142 | + | 2185 | 139 | 66 | 1853 | 595 |
DeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated. |
Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | No-coding score | Coding score |
ENST00000306107 | ENST00000487799 | ALCAM | chr3 | 105086325 | + | EIF2A | chr3 | 150270143 | + | 0.000993924 | 0.9990061 |
ENST00000306107 | ENST00000460851 | ALCAM | chr3 | 105086325 | + | EIF2A | chr3 | 150270143 | + | 0.001358283 | 0.99864167 |
ENST00000306107 | ENST00000406576 | ALCAM | chr3 | 105086325 | + | EIF2A | chr3 | 150270143 | + | 0.001036305 | 0.9989637 |
ENST00000306107 | ENST00000273435 | ALCAM | chr3 | 105086325 | + | EIF2A | chr3 | 150270143 | + | 0.000308151 | 0.99969184 |
ENST00000472644 | ENST00000487799 | ALCAM | chr3 | 105086325 | + | EIF2A | chr3 | 150270143 | + | 0.000769605 | 0.9992304 |
ENST00000472644 | ENST00000460851 | ALCAM | chr3 | 105086325 | + | EIF2A | chr3 | 150270143 | + | 0.001133731 | 0.9988663 |
ENST00000472644 | ENST00000406576 | ALCAM | chr3 | 105086325 | + | EIF2A | chr3 | 150270143 | + | 0.000792753 | 0.9992073 |
ENST00000472644 | ENST00000273435 | ALCAM | chr3 | 105086325 | + | EIF2A | chr3 | 150270143 | + | 0.000240686 | 0.99975926 |
ENST00000306107 | ENST00000487799 | ALCAM | chr3 | 105086325 | + | EIF2A | chr3 | 150270142 | + | 0.000993924 | 0.9990061 |
ENST00000306107 | ENST00000460851 | ALCAM | chr3 | 105086325 | + | EIF2A | chr3 | 150270142 | + | 0.001358283 | 0.99864167 |
ENST00000306107 | ENST00000406576 | ALCAM | chr3 | 105086325 | + | EIF2A | chr3 | 150270142 | + | 0.001036305 | 0.9989637 |
ENST00000306107 | ENST00000273435 | ALCAM | chr3 | 105086325 | + | EIF2A | chr3 | 150270142 | + | 0.000308151 | 0.99969184 |
ENST00000472644 | ENST00000487799 | ALCAM | chr3 | 105086325 | + | EIF2A | chr3 | 150270142 | + | 0.000769605 | 0.9992304 |
ENST00000472644 | ENST00000460851 | ALCAM | chr3 | 105086325 | + | EIF2A | chr3 | 150270142 | + | 0.001133731 | 0.9988663 |
ENST00000472644 | ENST00000406576 | ALCAM | chr3 | 105086325 | + | EIF2A | chr3 | 150270142 | + | 0.000792753 | 0.9992073 |
ENST00000472644 | ENST00000273435 | ALCAM | chr3 | 105086325 | + | EIF2A | chr3 | 150270142 | + | 0.000240686 | 0.99975926 |
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Fusion Genomic Features for ALCAM-EIF2A |
FusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints. |
Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | 1-p | p (fusion gene breakpoint) |
ALCAM | chr3 | 105086325 | + | EIF2A | chr3 | 150270142 | + | 0.000105098 | 0.99989486 |
ALCAM | chr3 | 105086325 | + | EIF2A | chr3 | 150270142 | + | 0.000105098 | 0.99989486 |
ALCAM | chr3 | 105086325 | + | EIF2A | chr3 | 150270142 | + | 0.000105098 | 0.99989486 |
ALCAM | chr3 | 105086325 | + | EIF2A | chr3 | 150270142 | + | 0.000105098 | 0.99989486 |
Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page. |
Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page. |
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Fusion Protein Features for ALCAM-EIF2A |
Go to FGviewer for the breakpoints of chr3:105086325-chr3:150270143 - FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels. |
Main function of each fusion partner protein. (from UniProt) |
Hgene | Tgene |
ALCAM | EIF2A |
FUNCTION: Cell adhesion molecule that mediates both heterotypic cell-cell contacts via its interaction with CD6, as well as homotypic cell-cell contacts (PubMed:7760007, PubMed:15496415, PubMed:15048703, PubMed:16352806, PubMed:23169771, PubMed:24945728). Promotes T-cell activation and proliferation via its interactions with CD6 (PubMed:15048703, PubMed:16352806, PubMed:24945728). Contributes to the formation and maturation of the immunological synapse via its interactions with CD6 (PubMed:15294938, PubMed:16352806). Mediates homotypic interactions with cells that express ALCAM (PubMed:15496415, PubMed:16352806). Required for normal hematopoietic stem cell engraftment in the bone marrow (PubMed:24740813). Mediates attachment of dendritic cells onto endothelial cells via homotypic interaction (PubMed:23169771). Inhibits endothelial cell migration and promotes endothelial tube formation via homotypic interactions (PubMed:15496415, PubMed:23169771). Required for normal organization of the lymph vessel network. Required for normal hematopoietic stem cell engraftment in the bone marrow. Plays a role in hematopoiesis; required for normal numbers of hematopoietic stem cells in bone marrow. Promotes in vitro osteoblast proliferation and differentiation (By similarity). Promotes neurite extension, axon growth and axon guidance; axons grow preferentially on surfaces that contain ALCAM. Mediates outgrowth and pathfinding for retinal ganglion cell axons (By similarity). {ECO:0000250|UniProtKB:P42292, ECO:0000269|PubMed:15048703, ECO:0000269|PubMed:15294938, ECO:0000269|PubMed:15496415, ECO:0000269|PubMed:16352806, ECO:0000269|PubMed:24945728, ECO:0000269|PubMed:7760007}.; FUNCTION: [Isoform 3]: Inhibits activities of membrane-bound isoforms by competing for the same interaction partners. Inhibits cell attachment via homotypic interactions. Promotes endothelial cell migration. Inhibits endothelial cell tube formation. {ECO:0000269|PubMed:15496415}. | FUNCTION: Metabolic-stress sensing protein kinase that phosphorylates the alpha subunit of eukaryotic translation initiation factor 2 (EIF2S1/eIF-2-alpha) in response to low amino acid availability (PubMed:25329545). Plays a role as an activator of the integrated stress response (ISR) required for adaptation to amino acid starvation (By similarity). EIF2S1/eIF-2-alpha phosphorylation in response to stress converts EIF2S1/eIF-2-alpha in a global protein synthesis inhibitor, leading to a global attenuation of cap-dependent translation, and thus to a reduced overall utilization of amino acids, while concomitantly initiating the preferential translation of ISR-specific mRNAs, such as the transcriptional activator ATF4, and hence allowing ATF4-mediated reprogramming of amino acid biosynthetic gene expression to alleviate nutrient depletion (By similarity). Binds uncharged tRNAs (By similarity). Involved in cell cycle arrest by promoting cyclin D1 mRNA translation repression after the unfolded protein response pathway (UPR) activation or cell cycle inhibitor CDKN1A/p21 mRNA translation activation in response to amino acid deprivation (PubMed:26102367). Plays a role in the consolidation of synaptic plasticity, learning as well as formation of long-term memory (By similarity). Plays a role in neurite outgrowth inhibition (By similarity). Plays a proapoptotic role in response to glucose deprivation (By similarity). Promotes global cellular protein synthesis repression in response to UV irradiation independently of the stress-activated protein kinase/c-Jun N-terminal kinase (SAPK/JNK) and p38 MAPK signaling pathways (By similarity). Plays a role in the antiviral response against alphavirus infection; impairs early viral mRNA translation of the incoming genomic virus RNA, thus preventing alphavirus replication (By similarity). {ECO:0000250|UniProtKB:P15442, ECO:0000250|UniProtKB:Q9QZ05, ECO:0000269|PubMed:25329545, ECO:0000269|PubMed:26102367}.; FUNCTION: (Microbial infection) Plays a role in modulating the adaptive immune response to yellow fever virus infection; promotes dendritic cells to initiate autophagy and antigene presentation to both CD4(+) and CD8(+) T-cells under amino acid starvation (PubMed:24310610). {ECO:0000269|PubMed:24310610}. |
Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Tgene | EIF2A | chr3:105086325 | chr3:150270142 | ENST00000383043 | 0 | 8 | 531_582 | 0.0 | 372.0 | Coiled coil | Ontology_term=ECO:0000255 | |
Tgene | EIF2A | chr3:105086325 | chr3:150270142 | ENST00000460851 | 0 | 14 | 531_582 | 9.333333333333334 | 586.0 | Coiled coil | Ontology_term=ECO:0000255 | |
Tgene | EIF2A | chr3:105086325 | chr3:150270143 | ENST00000383043 | 0 | 8 | 531_582 | 0.0 | 372.0 | Coiled coil | Ontology_term=ECO:0000255 | |
Tgene | EIF2A | chr3:105086325 | chr3:150270143 | ENST00000460851 | 0 | 14 | 531_582 | 9.333333333333334 | 586.0 | Coiled coil | Ontology_term=ECO:0000255 | |
Tgene | EIF2A | chr3:105086325 | chr3:150270142 | ENST00000383043 | 0 | 8 | 101_159 | 0.0 | 372.0 | Repeat | Note=WD 2 | |
Tgene | EIF2A | chr3:105086325 | chr3:150270142 | ENST00000383043 | 0 | 8 | 160_210 | 0.0 | 372.0 | Repeat | Note=WD 3 | |
Tgene | EIF2A | chr3:105086325 | chr3:150270142 | ENST00000383043 | 0 | 8 | 211_264 | 0.0 | 372.0 | Repeat | Note=WD 4 | |
Tgene | EIF2A | chr3:105086325 | chr3:150270142 | ENST00000383043 | 0 | 8 | 265_306 | 0.0 | 372.0 | Repeat | Note=WD 5 | |
Tgene | EIF2A | chr3:105086325 | chr3:150270142 | ENST00000383043 | 0 | 8 | 307_348 | 0.0 | 372.0 | Repeat | Note=WD 6 | |
Tgene | EIF2A | chr3:105086325 | chr3:150270142 | ENST00000383043 | 0 | 8 | 349_391 | 0.0 | 372.0 | Repeat | Note=WD 7 | |
Tgene | EIF2A | chr3:105086325 | chr3:150270142 | ENST00000383043 | 0 | 8 | 56_100 | 0.0 | 372.0 | Repeat | Note=WD 1 | |
Tgene | EIF2A | chr3:105086325 | chr3:150270142 | ENST00000460851 | 0 | 14 | 101_159 | 9.333333333333334 | 586.0 | Repeat | Note=WD 2 | |
Tgene | EIF2A | chr3:105086325 | chr3:150270142 | ENST00000460851 | 0 | 14 | 160_210 | 9.333333333333334 | 586.0 | Repeat | Note=WD 3 | |
Tgene | EIF2A | chr3:105086325 | chr3:150270142 | ENST00000460851 | 0 | 14 | 211_264 | 9.333333333333334 | 586.0 | Repeat | Note=WD 4 | |
Tgene | EIF2A | chr3:105086325 | chr3:150270142 | ENST00000460851 | 0 | 14 | 265_306 | 9.333333333333334 | 586.0 | Repeat | Note=WD 5 | |
Tgene | EIF2A | chr3:105086325 | chr3:150270142 | ENST00000460851 | 0 | 14 | 307_348 | 9.333333333333334 | 586.0 | Repeat | Note=WD 6 | |
Tgene | EIF2A | chr3:105086325 | chr3:150270142 | ENST00000460851 | 0 | 14 | 349_391 | 9.333333333333334 | 586.0 | Repeat | Note=WD 7 | |
Tgene | EIF2A | chr3:105086325 | chr3:150270142 | ENST00000460851 | 0 | 14 | 56_100 | 9.333333333333334 | 586.0 | Repeat | Note=WD 1 | |
Tgene | EIF2A | chr3:105086325 | chr3:150270143 | ENST00000383043 | 0 | 8 | 101_159 | 0.0 | 372.0 | Repeat | Note=WD 2 | |
Tgene | EIF2A | chr3:105086325 | chr3:150270143 | ENST00000383043 | 0 | 8 | 160_210 | 0.0 | 372.0 | Repeat | Note=WD 3 | |
Tgene | EIF2A | chr3:105086325 | chr3:150270143 | ENST00000383043 | 0 | 8 | 211_264 | 0.0 | 372.0 | Repeat | Note=WD 4 | |
Tgene | EIF2A | chr3:105086325 | chr3:150270143 | ENST00000383043 | 0 | 8 | 265_306 | 0.0 | 372.0 | Repeat | Note=WD 5 | |
Tgene | EIF2A | chr3:105086325 | chr3:150270143 | ENST00000383043 | 0 | 8 | 307_348 | 0.0 | 372.0 | Repeat | Note=WD 6 | |
Tgene | EIF2A | chr3:105086325 | chr3:150270143 | ENST00000383043 | 0 | 8 | 349_391 | 0.0 | 372.0 | Repeat | Note=WD 7 | |
Tgene | EIF2A | chr3:105086325 | chr3:150270143 | ENST00000383043 | 0 | 8 | 56_100 | 0.0 | 372.0 | Repeat | Note=WD 1 | |
Tgene | EIF2A | chr3:105086325 | chr3:150270143 | ENST00000460851 | 0 | 14 | 101_159 | 9.333333333333334 | 586.0 | Repeat | Note=WD 2 | |
Tgene | EIF2A | chr3:105086325 | chr3:150270143 | ENST00000460851 | 0 | 14 | 160_210 | 9.333333333333334 | 586.0 | Repeat | Note=WD 3 | |
Tgene | EIF2A | chr3:105086325 | chr3:150270143 | ENST00000460851 | 0 | 14 | 211_264 | 9.333333333333334 | 586.0 | Repeat | Note=WD 4 | |
Tgene | EIF2A | chr3:105086325 | chr3:150270143 | ENST00000460851 | 0 | 14 | 265_306 | 9.333333333333334 | 586.0 | Repeat | Note=WD 5 | |
Tgene | EIF2A | chr3:105086325 | chr3:150270143 | ENST00000460851 | 0 | 14 | 307_348 | 9.333333333333334 | 586.0 | Repeat | Note=WD 6 | |
Tgene | EIF2A | chr3:105086325 | chr3:150270143 | ENST00000460851 | 0 | 14 | 349_391 | 9.333333333333334 | 586.0 | Repeat | Note=WD 7 | |
Tgene | EIF2A | chr3:105086325 | chr3:150270143 | ENST00000460851 | 0 | 14 | 56_100 | 9.333333333333334 | 586.0 | Repeat | Note=WD 1 |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | ALCAM | chr3:105086325 | chr3:150270142 | ENST00000306107 | + | 1 | 16 | 125_234 | 24.333333333333332 | 1201.0 | Domain | Note=Ig-like V-type 2 |
Hgene | ALCAM | chr3:105086325 | chr3:150270142 | ENST00000306107 | + | 1 | 16 | 245_328 | 24.333333333333332 | 1201.0 | Domain | Note=Ig-like C2-type 1 |
Hgene | ALCAM | chr3:105086325 | chr3:150270142 | ENST00000306107 | + | 1 | 16 | 28_120 | 24.333333333333332 | 1201.0 | Domain | Note=Ig-like V-type 1 |
Hgene | ALCAM | chr3:105086325 | chr3:150270142 | ENST00000306107 | + | 1 | 16 | 333_409 | 24.333333333333332 | 1201.0 | Domain | Note=Ig-like C2-type 2 |
Hgene | ALCAM | chr3:105086325 | chr3:150270142 | ENST00000306107 | + | 1 | 16 | 416_501 | 24.333333333333332 | 1201.0 | Domain | Note=Ig-like C2-type 3 |
Hgene | ALCAM | chr3:105086325 | chr3:150270142 | ENST00000472644 | + | 1 | 15 | 125_234 | 24.333333333333332 | 1319.6666666666667 | Domain | Note=Ig-like V-type 2 |
Hgene | ALCAM | chr3:105086325 | chr3:150270142 | ENST00000472644 | + | 1 | 15 | 245_328 | 24.333333333333332 | 1319.6666666666667 | Domain | Note=Ig-like C2-type 1 |
Hgene | ALCAM | chr3:105086325 | chr3:150270142 | ENST00000472644 | + | 1 | 15 | 28_120 | 24.333333333333332 | 1319.6666666666667 | Domain | Note=Ig-like V-type 1 |
Hgene | ALCAM | chr3:105086325 | chr3:150270142 | ENST00000472644 | + | 1 | 15 | 333_409 | 24.333333333333332 | 1319.6666666666667 | Domain | Note=Ig-like C2-type 2 |
Hgene | ALCAM | chr3:105086325 | chr3:150270142 | ENST00000472644 | + | 1 | 15 | 416_501 | 24.333333333333332 | 1319.6666666666667 | Domain | Note=Ig-like C2-type 3 |
Hgene | ALCAM | chr3:105086325 | chr3:150270143 | ENST00000306107 | + | 1 | 16 | 125_234 | 24.333333333333332 | 1201.0 | Domain | Note=Ig-like V-type 2 |
Hgene | ALCAM | chr3:105086325 | chr3:150270143 | ENST00000306107 | + | 1 | 16 | 245_328 | 24.333333333333332 | 1201.0 | Domain | Note=Ig-like C2-type 1 |
Hgene | ALCAM | chr3:105086325 | chr3:150270143 | ENST00000306107 | + | 1 | 16 | 28_120 | 24.333333333333332 | 1201.0 | Domain | Note=Ig-like V-type 1 |
Hgene | ALCAM | chr3:105086325 | chr3:150270143 | ENST00000306107 | + | 1 | 16 | 333_409 | 24.333333333333332 | 1201.0 | Domain | Note=Ig-like C2-type 2 |
Hgene | ALCAM | chr3:105086325 | chr3:150270143 | ENST00000306107 | + | 1 | 16 | 416_501 | 24.333333333333332 | 1201.0 | Domain | Note=Ig-like C2-type 3 |
Hgene | ALCAM | chr3:105086325 | chr3:150270143 | ENST00000472644 | + | 1 | 15 | 125_234 | 24.333333333333332 | 1319.6666666666667 | Domain | Note=Ig-like V-type 2 |
Hgene | ALCAM | chr3:105086325 | chr3:150270143 | ENST00000472644 | + | 1 | 15 | 245_328 | 24.333333333333332 | 1319.6666666666667 | Domain | Note=Ig-like C2-type 1 |
Hgene | ALCAM | chr3:105086325 | chr3:150270143 | ENST00000472644 | + | 1 | 15 | 28_120 | 24.333333333333332 | 1319.6666666666667 | Domain | Note=Ig-like V-type 1 |
Hgene | ALCAM | chr3:105086325 | chr3:150270143 | ENST00000472644 | + | 1 | 15 | 333_409 | 24.333333333333332 | 1319.6666666666667 | Domain | Note=Ig-like C2-type 2 |
Hgene | ALCAM | chr3:105086325 | chr3:150270143 | ENST00000472644 | + | 1 | 15 | 416_501 | 24.333333333333332 | 1319.6666666666667 | Domain | Note=Ig-like C2-type 3 |
Hgene | ALCAM | chr3:105086325 | chr3:150270142 | ENST00000306107 | + | 1 | 16 | 28_527 | 24.333333333333332 | 1201.0 | Topological domain | Extracellular |
Hgene | ALCAM | chr3:105086325 | chr3:150270142 | ENST00000306107 | + | 1 | 16 | 550_583 | 24.333333333333332 | 1201.0 | Topological domain | Cytoplasmic |
Hgene | ALCAM | chr3:105086325 | chr3:150270142 | ENST00000472644 | + | 1 | 15 | 28_527 | 24.333333333333332 | 1319.6666666666667 | Topological domain | Extracellular |
Hgene | ALCAM | chr3:105086325 | chr3:150270142 | ENST00000472644 | + | 1 | 15 | 550_583 | 24.333333333333332 | 1319.6666666666667 | Topological domain | Cytoplasmic |
Hgene | ALCAM | chr3:105086325 | chr3:150270143 | ENST00000306107 | + | 1 | 16 | 28_527 | 24.333333333333332 | 1201.0 | Topological domain | Extracellular |
Hgene | ALCAM | chr3:105086325 | chr3:150270143 | ENST00000306107 | + | 1 | 16 | 550_583 | 24.333333333333332 | 1201.0 | Topological domain | Cytoplasmic |
Hgene | ALCAM | chr3:105086325 | chr3:150270143 | ENST00000472644 | + | 1 | 15 | 28_527 | 24.333333333333332 | 1319.6666666666667 | Topological domain | Extracellular |
Hgene | ALCAM | chr3:105086325 | chr3:150270143 | ENST00000472644 | + | 1 | 15 | 550_583 | 24.333333333333332 | 1319.6666666666667 | Topological domain | Cytoplasmic |
Hgene | ALCAM | chr3:105086325 | chr3:150270142 | ENST00000306107 | + | 1 | 16 | 528_549 | 24.333333333333332 | 1201.0 | Transmembrane | Helical |
Hgene | ALCAM | chr3:105086325 | chr3:150270142 | ENST00000472644 | + | 1 | 15 | 528_549 | 24.333333333333332 | 1319.6666666666667 | Transmembrane | Helical |
Hgene | ALCAM | chr3:105086325 | chr3:150270143 | ENST00000306107 | + | 1 | 16 | 528_549 | 24.333333333333332 | 1201.0 | Transmembrane | Helical |
Hgene | ALCAM | chr3:105086325 | chr3:150270143 | ENST00000472644 | + | 1 | 15 | 528_549 | 24.333333333333332 | 1319.6666666666667 | Transmembrane | Helical |
Top |
Fusion Gene Sequence for ALCAM-EIF2A |
For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones. |
>In-frame_ENST00000306107_ENST00000487799_TCGA-C8-A12L-01A_ALCAM_chr3_105086325_+_EIF2A_chr3_150270143_length(transcript)=2340nt_BP=573nt AGAGCAGCCCGGAGACCGCTGCCGCCGCTGCCGCTGCTACCACCGCTGCCACCTGAGGAGACCCGCCGCCCCCCCGTCGCCGCCTCCTGC GAGTCCTTCTTAGCACCTGGCGTTTCATGCACATTGCCACTGCCATTATTATTATCATTCCAATACAAGGAAAATAAAAGAAGATACCAG CGAAAAGAACCGCTTACACCTTTCCGAATTACTCAAGTGTCTCCTGGAAACAGAGGGTCGTTGTCCCCGGAGGAGCAGCCGAAGGGCCCG TGGGCTGGTGTTGACCGGGAGGGAGGAGGAGTTGGGGGCATTGCGTGGTGGAAAGTTGCGTGCGGCAGAGAACCGAAGGTGCAGCGCCAC AGCCCAGGGGACGGTGTGTCTGGGAGAAGACGCTGCCCCTGCGTCGGGACCCGCCAGCGCGCGGGCACCGCGGGGCCCGGGACGACGCCC CCTCCTGCGGCGTGGACTCCGTCAGTGGCCCACCAAGAAGGAGGAGGAATATGGAATCCAAGGGGGCCAGTTCCTGCCGTCTGCTCTTCT GCCTCTTGATCTCCGCCACCGTCTTCAGGCCAGTCCGAGGATCAGAAGGACTGTACATGGTGAATGGACCACCACATTTTACAGAAAGCA CAGTGTTTCCAAGAGTAAATATTATCAGTGTCACTAACAAGGGACTACTGCACTCCTTCGACCTCCTGAAGGCAGTTTGCCTTGAATTCT CACCCAAAAATACTGTCCTGGCAACGTGGCAGCCTTACACTACTTCTAAAGATGGCACAGCTGGGATACCCAACCTACAACTTTATGATG TGAAAACTGGGACATGTTTGAAATCTTTCATCCAGAAAAAAATGCAAAATTGGTGTCCATCCTGGTCAGAAGATGAAACTCTTTGTGCCC GCAATGTTAACAATGAAGTTCACTTCTTTGAAAACAACAATTTTAACACAATTGCAAATAAATTGCATTTGCAAAAAATTAATGATTTTG TATTATCACCTGGACCCCAACCATACAAGGTGGCTGTCTATGTTCCAGGAAGTAAAGGTGCACCTTCATTTGTTAGATTATATCAGTACC CCAACTTTGCTGGACCTCATGCAGCTTTAGCTAATAAAAGTTTCTTTAAGGCAGATAAAGTTACAATGCTGTGGAATAAAAAAGCTACTG CTGTGTTGGTAATAGCTAGCACAGATGTTGACAAGACAGGAGCTTCCTACTATGGAGAACAAACTCTACACTACATTGCAACAAATGGAG AAAGTGCTGTAGTGCAATTACCAAAAAATGGCCCCATTTATGATGTAGTTTGGAATTCTAGTTCTACTGAGTTTTGTGCTGTATATGGTT TTATGCCTGCCAAAGCGACAATTTTCAACTTGAAATGTGATCCTGTATTTGACTTTGGAACTGGTCCTCGTAATGCAGCCTACTATAGCC CTCATGGACATATATTAGTATTAGCTGGATTTGGAAATCTGAGGGGACAAATGGAAGTGTGGGATGTGAAAAACTACAAACTTATTTCTA AACCGGTGGCTTCTGATTCTACATATTTTGCTTGGTGCCCGGATGGTGAGCATATTTTAACAGCTACATGTGCTCCCAGGTTACGGGTTA ATAATGGATACAAAATTTGGCATTATACTGGCTCTATCTTGCACAAGTATGATGTGCCATCAAATGCAGAATTATGGCAGGTTTCTTGGC AGCCATTTTTGGATGGAATATTTCCAGCAAAAACAATAACTTACCAAGCAGTTCCAAGTGAAGTACCCAATGAGGAACCTAAAGTTGCAA CAGCTTATAGACCCCCAGCTTTAAGAAATAAACCAATCACCAATTCCAAATTGCATGAAGAGGAACCACCTCAGAATATGAAACCACAAT CAGGAAACGATAAGCCATTATCAAAAACAGCTCTTAAAAATCAAAGGAAGCATGAAGCTAAGAAAGCTGCAAAGCAGGAAGCAAGAAGTG ACAAGAGTCCAGATTTGGCACCTACTCCTGCCCCACAGAGCACACCACGAAACACTGTCTCTCAGTCAATTTCTGGGGACCCTGAGATAG ACAAAAAAATCAAGAACCTAAAGAAGAAACTGAAAGCAATCGAACAACTGAAAGAACAAGCAGCAACTGGAAAACAGCTAGAAAAAAATC AGTTGGAGAAAATTCAGAAAGAAACAGCCCTTCTCCAGGAGCTGGAAGATTTGGAATTGGGTATTTAAAGATTCACGGAAAGCAAGTTGA TGACCAGAAATCAGTGCAAACACATCTTCTGTTAAACCCATTGGTATACACAGAATATTCCTGTGCCCACACTTAATGTCAATCTATAAT >In-frame_ENST00000306107_ENST00000487799_TCGA-C8-A12L-01A_ALCAM_chr3_105086325_+_EIF2A_chr3_150270143_length(amino acids)=611AA_start in transcript=392_stop in transcript=2227 MPLRRDPPARGHRGARDDAPSCGVDSVSGPPRRRRNMESKGASSCRLLFCLLISATVFRPVRGSEGLYMVNGPPHFTESTVFPRVNIISV TNKGLLHSFDLLKAVCLEFSPKNTVLATWQPYTTSKDGTAGIPNLQLYDVKTGTCLKSFIQKKMQNWCPSWSEDETLCARNVNNEVHFFE NNNFNTIANKLHLQKINDFVLSPGPQPYKVAVYVPGSKGAPSFVRLYQYPNFAGPHAALANKSFFKADKVTMLWNKKATAVLVIASTDVD KTGASYYGEQTLHYIATNGESAVVQLPKNGPIYDVVWNSSSTEFCAVYGFMPAKATIFNLKCDPVFDFGTGPRNAAYYSPHGHILVLAGF GNLRGQMEVWDVKNYKLISKPVASDSTYFAWCPDGEHILTATCAPRLRVNNGYKIWHYTGSILHKYDVPSNAELWQVSWQPFLDGIFPAK TITYQAVPSEVPNEEPKVATAYRPPALRNKPITNSKLHEEEPPQNMKPQSGNDKPLSKTALKNQRKHEAKKAAKQEARSDKSPDLAPTPA -------------------------------------------------------------- >In-frame_ENST00000306107_ENST00000460851_TCGA-C8-A12L-01A_ALCAM_chr3_105086325_+_EIF2A_chr3_150270143_length(transcript)=2634nt_BP=573nt AGAGCAGCCCGGAGACCGCTGCCGCCGCTGCCGCTGCTACCACCGCTGCCACCTGAGGAGACCCGCCGCCCCCCCGTCGCCGCCTCCTGC GAGTCCTTCTTAGCACCTGGCGTTTCATGCACATTGCCACTGCCATTATTATTATCATTCCAATACAAGGAAAATAAAAGAAGATACCAG CGAAAAGAACCGCTTACACCTTTCCGAATTACTCAAGTGTCTCCTGGAAACAGAGGGTCGTTGTCCCCGGAGGAGCAGCCGAAGGGCCCG TGGGCTGGTGTTGACCGGGAGGGAGGAGGAGTTGGGGGCATTGCGTGGTGGAAAGTTGCGTGCGGCAGAGAACCGAAGGTGCAGCGCCAC AGCCCAGGGGACGGTGTGTCTGGGAGAAGACGCTGCCCCTGCGTCGGGACCCGCCAGCGCGCGGGCACCGCGGGGCCCGGGACGACGCCC CCTCCTGCGGCGTGGACTCCGTCAGTGGCCCACCAAGAAGGAGGAGGAATATGGAATCCAAGGGGGCCAGTTCCTGCCGTCTGCTCTTCT GCCTCTTGATCTCCGCCACCGTCTTCAGGCCAGTCCGAGGATCAGAAGGACTGTACATGGTGAATGGACCACCACATTTTACAGAAAGCA CAGTGTTTCCAAGGGAATCTGGGAAGAATTGCAAAGTCTGTATCTTTAGTAAGGATGGGACCTTGTTTGCCTGGGGCAATGGAGAAAAAG TAAATATTATCAGTGTCACTAACAAGGGACTACTGCACTCCTTCGACCTCCTGAAGGCAGTTTGCCTTGAATTCTCACCCAAAAATACTG TCCTGGCAACGTGGCAGCCTTACACTACTTCTAAAGATGGCACAGCTGGGATACCCAACCTACAACTTTATGATGTGAAAACTGGGACAT GTTTGAAATCTTTCATCCAGAAAAAAATGCAAAATTGGTGTCCATCCTGGTCAGAAGATGAAACTCTTTGTGCCCGCAATGTTAACAATG AAGTTCACTTCTTTGAAAACAACAATTTTAACACAATTGCAAATAAATTGCATTTGCAAAAAATTAATGATTTTGTATTATCACCTGGAC CCCAACCATACAAGGTGGCTGTCTATGTTCCAGGAAGTAAAGGTGCACCTTCATTTGTTAGATTATATCAGTACCCCAACTTTGCTGGAC CTCATGCAGCTTTAGCTAATAAAAGTTTCTTTAAGGCAGATAAAGTTACAATGCTGTGGAATAAAAAAGCTACTGCTGTGTTGGTAATAG CTAGCACAGATGTTGACAAGACAGGAGCTTCCTACTATGGAGAACAAACTCTACACTACATTGCAACAAATGGAGAAAGTGCTGTAGTGC AATTACCAAAAAATGGCCCCATTTATGATGTAGTTTGGAATTCTAGTTCTACTGAGTTTTGTGCTGTATATGGTTTTATGCCTGCCAAAG CGACAATTTTCAACTTGAAATGTGATCCTGTATTTGACTTTGGAACTGGTCCTCGTAATGCAGCCTACTATAGCCCTCATGGACATATAT TAGTATTAGCTGGATTTGGAAATCTGAGGGGACAAATGGAAGTGTGGGATGTGAAAAACTACAAACTTATTTCTAAACCGGTGGCTTCTG ATTCTACATATTTTGCTTGGTGCCCGGATGGTGAGCATATTTTAACAGCTACATGTGCTCCCAGGTTACGGGTTAATAATGGATACAAAA TTTGGCATTATACTGGCTCTATCTTGCACAAGTATGATGTGCCATCAAATGCAGAATTATGGCAGGTTTCTTGGCAGCCATTTTTGGATG GAATATTTCCAGCAAAAACAATAACTTACCAAGCAGTTCCAAGTGAAGTACCCAATGAGGAACCTAAAGTTGCAACAGCTTATAGACCCC CAGCTTTAAGAAATAAACCAATCACCAATTCCAAATTGCATGAAGAGGAACCACCTCAGAATATGAAACCACAATCAGGAAACGATAAGC CATTATCAAAAACAGCTCTTAAAAATCAAAGGAAGCATGAAGCTAAGAAAGCTGCAAAGCAGGAAGCAAGAAGTGACAAGAGTCCAGATT TGGCACCTACTCCTGCCCCACAGAGCACACCACGAAACACTGTCTCTCAGTCAATTTCTGGGGACCCTGAGATAGACAAAAAAATCAAGA ACCTAAAGAAGAAACTGAAAGCAATCGAACAACTGAAAGAACAAGCAGCAACTGGAAAACAGCTAGAAAAAAATCAGTTGGAGAAAATTC AGAAAGAAACAGCCCTTCTCCAGGAGCTGGAAGATTTGGAATTGGGTATTTAAAGATTCACGGAAAGCAAGTTGATGACCAGAAATCAGT GCAAACACATCTTCTGTTAAACCCATTGGTATACACAGAATATTCCTGTGCCCACACTTAATGTCAATCTATAATTTTAACCATTTATCC AAGATTCTACTAAGTGTAAAATTATTTAATAATGTCTATTAAATTGATATTTATATCTTGCATCCTATATCATGTCAATATGTGATATAG AAAAGAGATACGTGAATTTTTTAGCTAAGCTTGACAGATTGAAAGACAAGTGTCATTTTTTTTTGTAGAGGGTGATATATACCATGTAAA >In-frame_ENST00000306107_ENST00000460851_TCGA-C8-A12L-01A_ALCAM_chr3_105086325_+_EIF2A_chr3_150270143_length(amino acids)=636AA_start in transcript=392_stop in transcript=2302 MPLRRDPPARGHRGARDDAPSCGVDSVSGPPRRRRNMESKGASSCRLLFCLLISATVFRPVRGSEGLYMVNGPPHFTESTVFPRESGKNC KVCIFSKDGTLFAWGNGEKVNIISVTNKGLLHSFDLLKAVCLEFSPKNTVLATWQPYTTSKDGTAGIPNLQLYDVKTGTCLKSFIQKKMQ NWCPSWSEDETLCARNVNNEVHFFENNNFNTIANKLHLQKINDFVLSPGPQPYKVAVYVPGSKGAPSFVRLYQYPNFAGPHAALANKSFF KADKVTMLWNKKATAVLVIASTDVDKTGASYYGEQTLHYIATNGESAVVQLPKNGPIYDVVWNSSSTEFCAVYGFMPAKATIFNLKCDPV FDFGTGPRNAAYYSPHGHILVLAGFGNLRGQMEVWDVKNYKLISKPVASDSTYFAWCPDGEHILTATCAPRLRVNNGYKIWHYTGSILHK YDVPSNAELWQVSWQPFLDGIFPAKTITYQAVPSEVPNEEPKVATAYRPPALRNKPITNSKLHEEEPPQNMKPQSGNDKPLSKTALKNQR KHEAKKAAKQEARSDKSPDLAPTPAPQSTPRNTVSQSISGDPEIDKKIKNLKKKLKAIEQLKEQAATGKQLEKNQLEKIQKETALLQELE -------------------------------------------------------------- >In-frame_ENST00000306107_ENST00000406576_TCGA-C8-A12L-01A_ALCAM_chr3_105086325_+_EIF2A_chr3_150270143_length(transcript)=2324nt_BP=573nt AGAGCAGCCCGGAGACCGCTGCCGCCGCTGCCGCTGCTACCACCGCTGCCACCTGAGGAGACCCGCCGCCCCCCCGTCGCCGCCTCCTGC GAGTCCTTCTTAGCACCTGGCGTTTCATGCACATTGCCACTGCCATTATTATTATCATTCCAATACAAGGAAAATAAAAGAAGATACCAG CGAAAAGAACCGCTTACACCTTTCCGAATTACTCAAGTGTCTCCTGGAAACAGAGGGTCGTTGTCCCCGGAGGAGCAGCCGAAGGGCCCG TGGGCTGGTGTTGACCGGGAGGGAGGAGGAGTTGGGGGCATTGCGTGGTGGAAAGTTGCGTGCGGCAGAGAACCGAAGGTGCAGCGCCAC AGCCCAGGGGACGGTGTGTCTGGGAGAAGACGCTGCCCCTGCGTCGGGACCCGCCAGCGCGCGGGCACCGCGGGGCCCGGGACGACGCCC CCTCCTGCGGCGTGGACTCCGTCAGTGGCCCACCAAGAAGGAGGAGGAATATGGAATCCAAGGGGGCCAGTTCCTGCCGTCTGCTCTTCT GCCTCTTGATCTCCGCCACCGTCTTCAGGCCAGTCCGAGGATCAGAAGGACTGTACATGGTGAATGGACCACCACATTTTACAGAAAGCA CAGTGTTTCCAAGGGAATCTGGGAAGAATTGCAAAGTCTGTATCTTTAGTAAGGATGGGACCTTGTTTGCCTGGGGCAATGGAGAAAAAG TAAATATTATCAGTGTCACTAACAAGGGACTACTGCACTCCTTCGACCTCCTGAAGGCAGTTTGCCTTGAATTCTCACCCAAAAATACTG TCCTGGCAACGTGGCAGCCTTACACTAACACAATTGCAAATAAATTGCATTTGCAAAAAATTAATGATTTTGTATTATCACCTGGACCCC AACCATACAAGGTGGCTGTCTATGTTCCAGGAAGTAAAGGTGCACCTTCATTTGTTAGATTATATCAGTACCCCAACTTTGCTGGACCTC ATGCAGCTTTAGCTAATAAAAGTTTCTTTAAGGCAGATAAAGTTACAATGCTGTGGAATAAAAAAGCTACTGCTGTGTTGGTAATAGCTA GCACAGATGTTGACAAGACAGGAGCTTCCTACTATGGAGAACAAACTCTACACTACATTGCAACAAATGGAGAAAGTGCTGTAGTGCAAT TACCAAAAAATGGCCCCATTTATGATGTAGTTTGGAATTCTAGTTCTACTGAGTTTTGTGCTGTATATGGTTTTATGCCTGCCAAAGCGA CAATTTTCAACTTGAAATGTGATCCTGTATTTGACTTTGGAACTGGTCCTCGTAATGCAGCCTACTATAGCCCTCATGGACATATATTAG TATTAGCTGGATTTGGAAATCTGAGGGGACAAATGGAAGTGTGGGATGTGAAAAACTACAAACTTATTTCTAAACCGGTGGCTTCTGATT CTACATATTTTGCTTGGTGCCCGGATGGTGAGCATATTTTAACAGCTACATGTGCTCCCAGGTTACGGGTTAATAATGGATACAAAATTT GGCATTATACTGGCTCTATCTTGCACAAGTATGATGTGCCATCAAATGCAGAATTATGGCAGGTTTCTTGGCAGCCATTTTTGGATGGAA TATTTCCAGCAAAAACAATAACTTACCAAGCAGTTCCAAGTGAAGTACCCAATGAGGAACCTAAAGTTGCAACAGCTTATAGACCCCCAG CTTTAAGAAATAAACCAATCACCAATTCCAAATTGCATGAAGAGGAACCACCTCAGAATATGAAACCACAATCAGGAAACGATAAGCCAT TATCAAAAACAGCTCTTAAAAATCAAAGGAAGCATGAAGCTAAGAAAGCTGCAAAGCAGGAAGCAAGAAGTGACAAGAGTCCAGATTTGG CACCTACTCCTGCCCCACAGAGCACACCACGAAACACTGTCTCTCAGTCAATTTCTGGGGACCCTGAGATAGACAAAAAAATCAAGAACC TAAAGAAGAAACTGAAAGCAATCGAACAACTGAAAGAACAAGCAGCAACTGGAAAACAGCTAGAAAAAAATCAGTTGGAGAAAATTCAGA AAGAAACAGCCCTTCTCCAGGAGCTGGAAGATTTGGAATTGGGTATTTAAAGATTCACGGAAAGCAAGTTGATGACCAGAAATCAGTGCA AACACATCTTCTGTTAAACCCATTGGTATACACAGAATATTCCTGTGCCCACACTTAATGTCAATCTATAATTTTAACCATTTATCCAAG >In-frame_ENST00000306107_ENST00000406576_TCGA-C8-A12L-01A_ALCAM_chr3_105086325_+_EIF2A_chr3_150270143_length(amino acids)=575AA_start in transcript=392_stop in transcript=2119 MPLRRDPPARGHRGARDDAPSCGVDSVSGPPRRRRNMESKGASSCRLLFCLLISATVFRPVRGSEGLYMVNGPPHFTESTVFPRESGKNC KVCIFSKDGTLFAWGNGEKVNIISVTNKGLLHSFDLLKAVCLEFSPKNTVLATWQPYTNTIANKLHLQKINDFVLSPGPQPYKVAVYVPG SKGAPSFVRLYQYPNFAGPHAALANKSFFKADKVTMLWNKKATAVLVIASTDVDKTGASYYGEQTLHYIATNGESAVVQLPKNGPIYDVV WNSSSTEFCAVYGFMPAKATIFNLKCDPVFDFGTGPRNAAYYSPHGHILVLAGFGNLRGQMEVWDVKNYKLISKPVASDSTYFAWCPDGE HILTATCAPRLRVNNGYKIWHYTGSILHKYDVPSNAELWQVSWQPFLDGIFPAKTITYQAVPSEVPNEEPKVATAYRPPALRNKPITNSK LHEEEPPQNMKPQSGNDKPLSKTALKNQRKHEAKKAAKQEARSDKSPDLAPTPAPQSTPRNTVSQSISGDPEIDKKIKNLKKKLKAIEQL -------------------------------------------------------------- >In-frame_ENST00000306107_ENST00000273435_TCGA-C8-A12L-01A_ALCAM_chr3_105086325_+_EIF2A_chr3_150270143_length(transcript)=2619nt_BP=573nt AGAGCAGCCCGGAGACCGCTGCCGCCGCTGCCGCTGCTACCACCGCTGCCACCTGAGGAGACCCGCCGCCCCCCCGTCGCCGCCTCCTGC GAGTCCTTCTTAGCACCTGGCGTTTCATGCACATTGCCACTGCCATTATTATTATCATTCCAATACAAGGAAAATAAAAGAAGATACCAG CGAAAAGAACCGCTTACACCTTTCCGAATTACTCAAGTGTCTCCTGGAAACAGAGGGTCGTTGTCCCCGGAGGAGCAGCCGAAGGGCCCG TGGGCTGGTGTTGACCGGGAGGGAGGAGGAGTTGGGGGCATTGCGTGGTGGAAAGTTGCGTGCGGCAGAGAACCGAAGGTGCAGCGCCAC AGCCCAGGGGACGGTGTGTCTGGGAGAAGACGCTGCCCCTGCGTCGGGACCCGCCAGCGCGCGGGCACCGCGGGGCCCGGGACGACGCCC CCTCCTGCGGCGTGGACTCCGTCAGTGGCCCACCAAGAAGGAGGAGGAATATGGAATCCAAGGGGGCCAGTTCCTGCCGTCTGCTCTTCT GCCTCTTGATCTCCGCCACCGTCTTCAGGCCAGTCCGAGGATCAGAAGGACTGTACATGGTGAATGGACCACCACATTTTACAGAAAGCA CAGTGTTTCCAAGGGAATCTGGGAAGAATTGCAAAGTCTGTATCTTTAGTAAGGATGGGACCTTGTTTGCCTGGGGCAATGGAGAAAATG TCACTAACAAGGGACTACTGCACTCCTTCGACCTCCTGAAGGCAGTTTGCCTTGAATTCTCACCCAAAAATACTGTCCTGGCAACGTGGC AGCCTTACACTACTTCTAAAGATGGCACAGCTGGGATACCCAACCTACAACTTTATGATGTGAAAACTGGGACATGTTTGAAATCTTTCA TCCAGAAAAAAATGCAAAATTGGTGTCCATCCTGGTCAGAAGATGAAACTCTTTGTGCCCGCAATGTTAACAATGAAGTTCACTTCTTTG AAAACAACAATTTTAACACAATTGCAAATAAATTGCATTTGCAAAAAATTAATGATTTTGTATTATCACCTGGACCCCAACCATACAAGG TGGCTGTCTATGTTCCAGGAAGTAAAGGTGCACCTTCATTTGTTAGATTATATCAGTACCCCAACTTTGCTGGACCTCATGCAGCTTTAG CTAATAAAAGTTTCTTTAAGGCAGATAAAGTTACAATGCTGTGGAATAAAAAAGCTACTGCTGTGTTGGTAATAGCTAGCACAGATGTTG ACAAGACAGGAGCTTCCTACTATGGAGAACAAACTCTACACTACATTGCAACAAATGGAGAAAGTGCTGTAGTGCAATTACCAAAAAATG GCCCCATTTATGATGTAGTTTGGAATTCTAGTTCTACTGAGTTTTGTGCTGTATATGGTTTTATGCCTGCCAAAGCGACAATTTTCAACT TGAAATGTGATCCTGTATTTGACTTTGGAACTGGTCCTCGTAATGCAGCCTACTATAGCCCTCATGGACATATATTAGTATTAGCTGGAT TTGGAAATCTGAGGGGACAAATGGAAGTGTGGGATGTGAAAAACTACAAACTTATTTCTAAACCGGTGGCTTCTGATTCTACATATTTTG CTTGGTGCCCGGATGGTGAGCATATTTTAACAGCTACATGTGCTCCCAGGTTACGGGTTAATAATGGATACAAAATTTGGCATTATACTG GCTCTATCTTGCACAAGTATGATGTGCCATCAAATGCAGAATTATGGCAGGTTTCTTGGCAGCCATTTTTGGATGGAATATTTCCAGCAA AAACAATAACTTACCAAGCAGTTCCAAGTGAAGTACCCAATGAGGAACCTAAAGTTGCAACAGCTTATAGACCCCCAGCTTTAAGAAATA AACCAATCACCAATTCCAAATTGCATGAAGAGGAACCACCTCAGAATATGAAACCACAATCAGGAAACGATAAGCCATTATCAAAAACAG CTCTTAAAAATCAAAGGAAGCATGAAGCTAAGAAAGCTGCAAAGCAGGAAGCAAGAAGTGACAAGAGTCCAGATTTGGCACCTACTCCTG CCCCACAGAGCACACCACGAAACACTGTCTCTCAGTCAATTTCTGGGGACCCTGAGATAGACAAAAAAATCAAGAACCTAAAGAAGAAAC TGAAAGCAATCGAACAACTGAAAGAACAAGCAGCAACTGGAAAACAGCTAGAAAAAAATCAGTTGGAGAAAATTCAGAAAGAAACAGCCC TTCTCCAGGAGCTGGAAGATTTGGAATTGGGTATTTAAAGATTCACGGAAAGCAAGTTGATGACCAGAAATCAGTGCAAACACATCTTCT GTTAAACCCATTGGTATACACAGAATATTCCTGTGCCCACACTTAATGTCAATCTATAATTTTAACCATTTATCCAAGATTCTACTAAGT GTAAAATTATTTAATAATGTCTATTAAATTGATATTTATATCTTGCATCCTATATCATGTCAATATGTGATATAGAAAAGAGATACGTGA ATTTTTTAGCTAAGCTTGACAGATTGAAAGACAAGTGTCATTTTTTTTTGTAGAGGGTGATATATACCATGTAAATGAACAAAGACATTT >In-frame_ENST00000306107_ENST00000273435_TCGA-C8-A12L-01A_ALCAM_chr3_105086325_+_EIF2A_chr3_150270143_length(amino acids)=631AA_start in transcript=392_stop in transcript=2287 MPLRRDPPARGHRGARDDAPSCGVDSVSGPPRRRRNMESKGASSCRLLFCLLISATVFRPVRGSEGLYMVNGPPHFTESTVFPRESGKNC KVCIFSKDGTLFAWGNGENVTNKGLLHSFDLLKAVCLEFSPKNTVLATWQPYTTSKDGTAGIPNLQLYDVKTGTCLKSFIQKKMQNWCPS WSEDETLCARNVNNEVHFFENNNFNTIANKLHLQKINDFVLSPGPQPYKVAVYVPGSKGAPSFVRLYQYPNFAGPHAALANKSFFKADKV TMLWNKKATAVLVIASTDVDKTGASYYGEQTLHYIATNGESAVVQLPKNGPIYDVVWNSSSTEFCAVYGFMPAKATIFNLKCDPVFDFGT GPRNAAYYSPHGHILVLAGFGNLRGQMEVWDVKNYKLISKPVASDSTYFAWCPDGEHILTATCAPRLRVNNGYKIWHYTGSILHKYDVPS NAELWQVSWQPFLDGIFPAKTITYQAVPSEVPNEEPKVATAYRPPALRNKPITNSKLHEEEPPQNMKPQSGNDKPLSKTALKNQRKHEAK KAAKQEARSDKSPDLAPTPAPQSTPRNTVSQSISGDPEIDKKIKNLKKKLKAIEQLKEQAATGKQLEKNQLEKIQKETALLQELEDLELG -------------------------------------------------------------- >In-frame_ENST00000472644_ENST00000487799_TCGA-C8-A12L-01A_ALCAM_chr3_105086325_+_EIF2A_chr3_150270143_length(transcript)=1906nt_BP=139nt GCCCGGGACGACGCCCCCTCCTGCGGCGTGGACTCCGTCAGTGGCCCACCAAGAAGGAGGAGGAATATGGAATCCAAGGGGGCCAGTTCC TGCCGTCTGCTCTTCTGCCTCTTGATCTCCGCCACCGTCTTCAGGCCAGTCCGAGGATCAGAAGGACTGTACATGGTGAATGGACCACCA CATTTTACAGAAAGCACAGTGTTTCCAAGAGTAAATATTATCAGTGTCACTAACAAGGGACTACTGCACTCCTTCGACCTCCTGAAGGCA GTTTGCCTTGAATTCTCACCCAAAAATACTGTCCTGGCAACGTGGCAGCCTTACACTACTTCTAAAGATGGCACAGCTGGGATACCCAAC CTACAACTTTATGATGTGAAAACTGGGACATGTTTGAAATCTTTCATCCAGAAAAAAATGCAAAATTGGTGTCCATCCTGGTCAGAAGAT GAAACTCTTTGTGCCCGCAATGTTAACAATGAAGTTCACTTCTTTGAAAACAACAATTTTAACACAATTGCAAATAAATTGCATTTGCAA AAAATTAATGATTTTGTATTATCACCTGGACCCCAACCATACAAGGTGGCTGTCTATGTTCCAGGAAGTAAAGGTGCACCTTCATTTGTT AGATTATATCAGTACCCCAACTTTGCTGGACCTCATGCAGCTTTAGCTAATAAAAGTTTCTTTAAGGCAGATAAAGTTACAATGCTGTGG AATAAAAAAGCTACTGCTGTGTTGGTAATAGCTAGCACAGATGTTGACAAGACAGGAGCTTCCTACTATGGAGAACAAACTCTACACTAC ATTGCAACAAATGGAGAAAGTGCTGTAGTGCAATTACCAAAAAATGGCCCCATTTATGATGTAGTTTGGAATTCTAGTTCTACTGAGTTT TGTGCTGTATATGGTTTTATGCCTGCCAAAGCGACAATTTTCAACTTGAAATGTGATCCTGTATTTGACTTTGGAACTGGTCCTCGTAAT GCAGCCTACTATAGCCCTCATGGACATATATTAGTATTAGCTGGATTTGGAAATCTGAGGGGACAAATGGAAGTGTGGGATGTGAAAAAC TACAAACTTATTTCTAAACCGGTGGCTTCTGATTCTACATATTTTGCTTGGTGCCCGGATGGTGAGCATATTTTAACAGCTACATGTGCT CCCAGGTTACGGGTTAATAATGGATACAAAATTTGGCATTATACTGGCTCTATCTTGCACAAGTATGATGTGCCATCAAATGCAGAATTA TGGCAGGTTTCTTGGCAGCCATTTTTGGATGGAATATTTCCAGCAAAAACAATAACTTACCAAGCAGTTCCAAGTGAAGTACCCAATGAG GAACCTAAAGTTGCAACAGCTTATAGACCCCCAGCTTTAAGAAATAAACCAATCACCAATTCCAAATTGCATGAAGAGGAACCACCTCAG AATATGAAACCACAATCAGGAAACGATAAGCCATTATCAAAAACAGCTCTTAAAAATCAAAGGAAGCATGAAGCTAAGAAAGCTGCAAAG CAGGAAGCAAGAAGTGACAAGAGTCCAGATTTGGCACCTACTCCTGCCCCACAGAGCACACCACGAAACACTGTCTCTCAGTCAATTTCT GGGGACCCTGAGATAGACAAAAAAATCAAGAACCTAAAGAAGAAACTGAAAGCAATCGAACAACTGAAAGAACAAGCAGCAACTGGAAAA CAGCTAGAAAAAAATCAGTTGGAGAAAATTCAGAAAGAAACAGCCCTTCTCCAGGAGCTGGAAGATTTGGAATTGGGTATTTAAAGATTC ACGGAAAGCAAGTTGATGACCAGAAATCAGTGCAAACACATCTTCTGTTAAACCCATTGGTATACACAGAATATTCCTGTGCCCACACTT >In-frame_ENST00000472644_ENST00000487799_TCGA-C8-A12L-01A_ALCAM_chr3_105086325_+_EIF2A_chr3_150270143_length(amino acids)=575AA_start in transcript=66_stop in transcript=1793 MESKGASSCRLLFCLLISATVFRPVRGSEGLYMVNGPPHFTESTVFPRVNIISVTNKGLLHSFDLLKAVCLEFSPKNTVLATWQPYTTSK DGTAGIPNLQLYDVKTGTCLKSFIQKKMQNWCPSWSEDETLCARNVNNEVHFFENNNFNTIANKLHLQKINDFVLSPGPQPYKVAVYVPG SKGAPSFVRLYQYPNFAGPHAALANKSFFKADKVTMLWNKKATAVLVIASTDVDKTGASYYGEQTLHYIATNGESAVVQLPKNGPIYDVV WNSSSTEFCAVYGFMPAKATIFNLKCDPVFDFGTGPRNAAYYSPHGHILVLAGFGNLRGQMEVWDVKNYKLISKPVASDSTYFAWCPDGE HILTATCAPRLRVNNGYKIWHYTGSILHKYDVPSNAELWQVSWQPFLDGIFPAKTITYQAVPSEVPNEEPKVATAYRPPALRNKPITNSK LHEEEPPQNMKPQSGNDKPLSKTALKNQRKHEAKKAAKQEARSDKSPDLAPTPAPQSTPRNTVSQSISGDPEIDKKIKNLKKKLKAIEQL -------------------------------------------------------------- >In-frame_ENST00000472644_ENST00000460851_TCGA-C8-A12L-01A_ALCAM_chr3_105086325_+_EIF2A_chr3_150270143_length(transcript)=2200nt_BP=139nt GCCCGGGACGACGCCCCCTCCTGCGGCGTGGACTCCGTCAGTGGCCCACCAAGAAGGAGGAGGAATATGGAATCCAAGGGGGCCAGTTCC TGCCGTCTGCTCTTCTGCCTCTTGATCTCCGCCACCGTCTTCAGGCCAGTCCGAGGATCAGAAGGACTGTACATGGTGAATGGACCACCA CATTTTACAGAAAGCACAGTGTTTCCAAGGGAATCTGGGAAGAATTGCAAAGTCTGTATCTTTAGTAAGGATGGGACCTTGTTTGCCTGG GGCAATGGAGAAAAAGTAAATATTATCAGTGTCACTAACAAGGGACTACTGCACTCCTTCGACCTCCTGAAGGCAGTTTGCCTTGAATTC TCACCCAAAAATACTGTCCTGGCAACGTGGCAGCCTTACACTACTTCTAAAGATGGCACAGCTGGGATACCCAACCTACAACTTTATGAT GTGAAAACTGGGACATGTTTGAAATCTTTCATCCAGAAAAAAATGCAAAATTGGTGTCCATCCTGGTCAGAAGATGAAACTCTTTGTGCC CGCAATGTTAACAATGAAGTTCACTTCTTTGAAAACAACAATTTTAACACAATTGCAAATAAATTGCATTTGCAAAAAATTAATGATTTT GTATTATCACCTGGACCCCAACCATACAAGGTGGCTGTCTATGTTCCAGGAAGTAAAGGTGCACCTTCATTTGTTAGATTATATCAGTAC CCCAACTTTGCTGGACCTCATGCAGCTTTAGCTAATAAAAGTTTCTTTAAGGCAGATAAAGTTACAATGCTGTGGAATAAAAAAGCTACT GCTGTGTTGGTAATAGCTAGCACAGATGTTGACAAGACAGGAGCTTCCTACTATGGAGAACAAACTCTACACTACATTGCAACAAATGGA GAAAGTGCTGTAGTGCAATTACCAAAAAATGGCCCCATTTATGATGTAGTTTGGAATTCTAGTTCTACTGAGTTTTGTGCTGTATATGGT TTTATGCCTGCCAAAGCGACAATTTTCAACTTGAAATGTGATCCTGTATTTGACTTTGGAACTGGTCCTCGTAATGCAGCCTACTATAGC CCTCATGGACATATATTAGTATTAGCTGGATTTGGAAATCTGAGGGGACAAATGGAAGTGTGGGATGTGAAAAACTACAAACTTATTTCT AAACCGGTGGCTTCTGATTCTACATATTTTGCTTGGTGCCCGGATGGTGAGCATATTTTAACAGCTACATGTGCTCCCAGGTTACGGGTT AATAATGGATACAAAATTTGGCATTATACTGGCTCTATCTTGCACAAGTATGATGTGCCATCAAATGCAGAATTATGGCAGGTTTCTTGG CAGCCATTTTTGGATGGAATATTTCCAGCAAAAACAATAACTTACCAAGCAGTTCCAAGTGAAGTACCCAATGAGGAACCTAAAGTTGCA ACAGCTTATAGACCCCCAGCTTTAAGAAATAAACCAATCACCAATTCCAAATTGCATGAAGAGGAACCACCTCAGAATATGAAACCACAA TCAGGAAACGATAAGCCATTATCAAAAACAGCTCTTAAAAATCAAAGGAAGCATGAAGCTAAGAAAGCTGCAAAGCAGGAAGCAAGAAGT GACAAGAGTCCAGATTTGGCACCTACTCCTGCCCCACAGAGCACACCACGAAACACTGTCTCTCAGTCAATTTCTGGGGACCCTGAGATA GACAAAAAAATCAAGAACCTAAAGAAGAAACTGAAAGCAATCGAACAACTGAAAGAACAAGCAGCAACTGGAAAACAGCTAGAAAAAAAT CAGTTGGAGAAAATTCAGAAAGAAACAGCCCTTCTCCAGGAGCTGGAAGATTTGGAATTGGGTATTTAAAGATTCACGGAAAGCAAGTTG ATGACCAGAAATCAGTGCAAACACATCTTCTGTTAAACCCATTGGTATACACAGAATATTCCTGTGCCCACACTTAATGTCAATCTATAA TTTTAACCATTTATCCAAGATTCTACTAAGTGTAAAATTATTTAATAATGTCTATTAAATTGATATTTATATCTTGCATCCTATATCATG TCAATATGTGATATAGAAAAGAGATACGTGAATTTTTTAGCTAAGCTTGACAGATTGAAAGACAAGTGTCATTTTTTTTTGTAGAGGGTG >In-frame_ENST00000472644_ENST00000460851_TCGA-C8-A12L-01A_ALCAM_chr3_105086325_+_EIF2A_chr3_150270143_length(amino acids)=600AA_start in transcript=66_stop in transcript=1868 MESKGASSCRLLFCLLISATVFRPVRGSEGLYMVNGPPHFTESTVFPRESGKNCKVCIFSKDGTLFAWGNGEKVNIISVTNKGLLHSFDL LKAVCLEFSPKNTVLATWQPYTTSKDGTAGIPNLQLYDVKTGTCLKSFIQKKMQNWCPSWSEDETLCARNVNNEVHFFENNNFNTIANKL HLQKINDFVLSPGPQPYKVAVYVPGSKGAPSFVRLYQYPNFAGPHAALANKSFFKADKVTMLWNKKATAVLVIASTDVDKTGASYYGEQT LHYIATNGESAVVQLPKNGPIYDVVWNSSSTEFCAVYGFMPAKATIFNLKCDPVFDFGTGPRNAAYYSPHGHILVLAGFGNLRGQMEVWD VKNYKLISKPVASDSTYFAWCPDGEHILTATCAPRLRVNNGYKIWHYTGSILHKYDVPSNAELWQVSWQPFLDGIFPAKTITYQAVPSEV PNEEPKVATAYRPPALRNKPITNSKLHEEEPPQNMKPQSGNDKPLSKTALKNQRKHEAKKAAKQEARSDKSPDLAPTPAPQSTPRNTVSQ -------------------------------------------------------------- >In-frame_ENST00000472644_ENST00000406576_TCGA-C8-A12L-01A_ALCAM_chr3_105086325_+_EIF2A_chr3_150270143_length(transcript)=1890nt_BP=139nt GCCCGGGACGACGCCCCCTCCTGCGGCGTGGACTCCGTCAGTGGCCCACCAAGAAGGAGGAGGAATATGGAATCCAAGGGGGCCAGTTCC TGCCGTCTGCTCTTCTGCCTCTTGATCTCCGCCACCGTCTTCAGGCCAGTCCGAGGATCAGAAGGACTGTACATGGTGAATGGACCACCA CATTTTACAGAAAGCACAGTGTTTCCAAGGGAATCTGGGAAGAATTGCAAAGTCTGTATCTTTAGTAAGGATGGGACCTTGTTTGCCTGG GGCAATGGAGAAAAAGTAAATATTATCAGTGTCACTAACAAGGGACTACTGCACTCCTTCGACCTCCTGAAGGCAGTTTGCCTTGAATTC TCACCCAAAAATACTGTCCTGGCAACGTGGCAGCCTTACACTAACACAATTGCAAATAAATTGCATTTGCAAAAAATTAATGATTTTGTA TTATCACCTGGACCCCAACCATACAAGGTGGCTGTCTATGTTCCAGGAAGTAAAGGTGCACCTTCATTTGTTAGATTATATCAGTACCCC AACTTTGCTGGACCTCATGCAGCTTTAGCTAATAAAAGTTTCTTTAAGGCAGATAAAGTTACAATGCTGTGGAATAAAAAAGCTACTGCT GTGTTGGTAATAGCTAGCACAGATGTTGACAAGACAGGAGCTTCCTACTATGGAGAACAAACTCTACACTACATTGCAACAAATGGAGAA AGTGCTGTAGTGCAATTACCAAAAAATGGCCCCATTTATGATGTAGTTTGGAATTCTAGTTCTACTGAGTTTTGTGCTGTATATGGTTTT ATGCCTGCCAAAGCGACAATTTTCAACTTGAAATGTGATCCTGTATTTGACTTTGGAACTGGTCCTCGTAATGCAGCCTACTATAGCCCT CATGGACATATATTAGTATTAGCTGGATTTGGAAATCTGAGGGGACAAATGGAAGTGTGGGATGTGAAAAACTACAAACTTATTTCTAAA CCGGTGGCTTCTGATTCTACATATTTTGCTTGGTGCCCGGATGGTGAGCATATTTTAACAGCTACATGTGCTCCCAGGTTACGGGTTAAT AATGGATACAAAATTTGGCATTATACTGGCTCTATCTTGCACAAGTATGATGTGCCATCAAATGCAGAATTATGGCAGGTTTCTTGGCAG CCATTTTTGGATGGAATATTTCCAGCAAAAACAATAACTTACCAAGCAGTTCCAAGTGAAGTACCCAATGAGGAACCTAAAGTTGCAACA GCTTATAGACCCCCAGCTTTAAGAAATAAACCAATCACCAATTCCAAATTGCATGAAGAGGAACCACCTCAGAATATGAAACCACAATCA GGAAACGATAAGCCATTATCAAAAACAGCTCTTAAAAATCAAAGGAAGCATGAAGCTAAGAAAGCTGCAAAGCAGGAAGCAAGAAGTGAC AAGAGTCCAGATTTGGCACCTACTCCTGCCCCACAGAGCACACCACGAAACACTGTCTCTCAGTCAATTTCTGGGGACCCTGAGATAGAC AAAAAAATCAAGAACCTAAAGAAGAAACTGAAAGCAATCGAACAACTGAAAGAACAAGCAGCAACTGGAAAACAGCTAGAAAAAAATCAG TTGGAGAAAATTCAGAAAGAAACAGCCCTTCTCCAGGAGCTGGAAGATTTGGAATTGGGTATTTAAAGATTCACGGAAAGCAAGTTGATG ACCAGAAATCAGTGCAAACACATCTTCTGTTAAACCCATTGGTATACACAGAATATTCCTGTGCCCACACTTAATGTCAATCTATAATTT TAACCATTTATCCAAGATTCTACTAAGTGTAAAATTATTTAATAATGTCTATTAAATTGATATTTATATCTTGCATCCTATATCATGTCA >In-frame_ENST00000472644_ENST00000406576_TCGA-C8-A12L-01A_ALCAM_chr3_105086325_+_EIF2A_chr3_150270143_length(amino acids)=539AA_start in transcript=66_stop in transcript=1685 MESKGASSCRLLFCLLISATVFRPVRGSEGLYMVNGPPHFTESTVFPRESGKNCKVCIFSKDGTLFAWGNGEKVNIISVTNKGLLHSFDL LKAVCLEFSPKNTVLATWQPYTNTIANKLHLQKINDFVLSPGPQPYKVAVYVPGSKGAPSFVRLYQYPNFAGPHAALANKSFFKADKVTM LWNKKATAVLVIASTDVDKTGASYYGEQTLHYIATNGESAVVQLPKNGPIYDVVWNSSSTEFCAVYGFMPAKATIFNLKCDPVFDFGTGP RNAAYYSPHGHILVLAGFGNLRGQMEVWDVKNYKLISKPVASDSTYFAWCPDGEHILTATCAPRLRVNNGYKIWHYTGSILHKYDVPSNA ELWQVSWQPFLDGIFPAKTITYQAVPSEVPNEEPKVATAYRPPALRNKPITNSKLHEEEPPQNMKPQSGNDKPLSKTALKNQRKHEAKKA -------------------------------------------------------------- >In-frame_ENST00000472644_ENST00000273435_TCGA-C8-A12L-01A_ALCAM_chr3_105086325_+_EIF2A_chr3_150270143_length(transcript)=2185nt_BP=139nt GCCCGGGACGACGCCCCCTCCTGCGGCGTGGACTCCGTCAGTGGCCCACCAAGAAGGAGGAGGAATATGGAATCCAAGGGGGCCAGTTCC TGCCGTCTGCTCTTCTGCCTCTTGATCTCCGCCACCGTCTTCAGGCCAGTCCGAGGATCAGAAGGACTGTACATGGTGAATGGACCACCA CATTTTACAGAAAGCACAGTGTTTCCAAGGGAATCTGGGAAGAATTGCAAAGTCTGTATCTTTAGTAAGGATGGGACCTTGTTTGCCTGG GGCAATGGAGAAAATGTCACTAACAAGGGACTACTGCACTCCTTCGACCTCCTGAAGGCAGTTTGCCTTGAATTCTCACCCAAAAATACT GTCCTGGCAACGTGGCAGCCTTACACTACTTCTAAAGATGGCACAGCTGGGATACCCAACCTACAACTTTATGATGTGAAAACTGGGACA TGTTTGAAATCTTTCATCCAGAAAAAAATGCAAAATTGGTGTCCATCCTGGTCAGAAGATGAAACTCTTTGTGCCCGCAATGTTAACAAT GAAGTTCACTTCTTTGAAAACAACAATTTTAACACAATTGCAAATAAATTGCATTTGCAAAAAATTAATGATTTTGTATTATCACCTGGA CCCCAACCATACAAGGTGGCTGTCTATGTTCCAGGAAGTAAAGGTGCACCTTCATTTGTTAGATTATATCAGTACCCCAACTTTGCTGGA CCTCATGCAGCTTTAGCTAATAAAAGTTTCTTTAAGGCAGATAAAGTTACAATGCTGTGGAATAAAAAAGCTACTGCTGTGTTGGTAATA GCTAGCACAGATGTTGACAAGACAGGAGCTTCCTACTATGGAGAACAAACTCTACACTACATTGCAACAAATGGAGAAAGTGCTGTAGTG CAATTACCAAAAAATGGCCCCATTTATGATGTAGTTTGGAATTCTAGTTCTACTGAGTTTTGTGCTGTATATGGTTTTATGCCTGCCAAA GCGACAATTTTCAACTTGAAATGTGATCCTGTATTTGACTTTGGAACTGGTCCTCGTAATGCAGCCTACTATAGCCCTCATGGACATATA TTAGTATTAGCTGGATTTGGAAATCTGAGGGGACAAATGGAAGTGTGGGATGTGAAAAACTACAAACTTATTTCTAAACCGGTGGCTTCT GATTCTACATATTTTGCTTGGTGCCCGGATGGTGAGCATATTTTAACAGCTACATGTGCTCCCAGGTTACGGGTTAATAATGGATACAAA ATTTGGCATTATACTGGCTCTATCTTGCACAAGTATGATGTGCCATCAAATGCAGAATTATGGCAGGTTTCTTGGCAGCCATTTTTGGAT GGAATATTTCCAGCAAAAACAATAACTTACCAAGCAGTTCCAAGTGAAGTACCCAATGAGGAACCTAAAGTTGCAACAGCTTATAGACCC CCAGCTTTAAGAAATAAACCAATCACCAATTCCAAATTGCATGAAGAGGAACCACCTCAGAATATGAAACCACAATCAGGAAACGATAAG CCATTATCAAAAACAGCTCTTAAAAATCAAAGGAAGCATGAAGCTAAGAAAGCTGCAAAGCAGGAAGCAAGAAGTGACAAGAGTCCAGAT TTGGCACCTACTCCTGCCCCACAGAGCACACCACGAAACACTGTCTCTCAGTCAATTTCTGGGGACCCTGAGATAGACAAAAAAATCAAG AACCTAAAGAAGAAACTGAAAGCAATCGAACAACTGAAAGAACAAGCAGCAACTGGAAAACAGCTAGAAAAAAATCAGTTGGAGAAAATT CAGAAAGAAACAGCCCTTCTCCAGGAGCTGGAAGATTTGGAATTGGGTATTTAAAGATTCACGGAAAGCAAGTTGATGACCAGAAATCAG TGCAAACACATCTTCTGTTAAACCCATTGGTATACACAGAATATTCCTGTGCCCACACTTAATGTCAATCTATAATTTTAACCATTTATC CAAGATTCTACTAAGTGTAAAATTATTTAATAATGTCTATTAAATTGATATTTATATCTTGCATCCTATATCATGTCAATATGTGATATA GAAAAGAGATACGTGAATTTTTTAGCTAAGCTTGACAGATTGAAAGACAAGTGTCATTTTTTTTTGTAGAGGGTGATATATACCATGTAA >In-frame_ENST00000472644_ENST00000273435_TCGA-C8-A12L-01A_ALCAM_chr3_105086325_+_EIF2A_chr3_150270143_length(amino acids)=595AA_start in transcript=66_stop in transcript=1853 MESKGASSCRLLFCLLISATVFRPVRGSEGLYMVNGPPHFTESTVFPRESGKNCKVCIFSKDGTLFAWGNGENVTNKGLLHSFDLLKAVC LEFSPKNTVLATWQPYTTSKDGTAGIPNLQLYDVKTGTCLKSFIQKKMQNWCPSWSEDETLCARNVNNEVHFFENNNFNTIANKLHLQKI NDFVLSPGPQPYKVAVYVPGSKGAPSFVRLYQYPNFAGPHAALANKSFFKADKVTMLWNKKATAVLVIASTDVDKTGASYYGEQTLHYIA TNGESAVVQLPKNGPIYDVVWNSSSTEFCAVYGFMPAKATIFNLKCDPVFDFGTGPRNAAYYSPHGHILVLAGFGNLRGQMEVWDVKNYK LISKPVASDSTYFAWCPDGEHILTATCAPRLRVNNGYKIWHYTGSILHKYDVPSNAELWQVSWQPFLDGIFPAKTITYQAVPSEVPNEEP KVATAYRPPALRNKPITNSKLHEEEPPQNMKPQSGNDKPLSKTALKNQRKHEAKKAAKQEARSDKSPDLAPTPAPQSTPRNTVSQSISGD -------------------------------------------------------------- >In-frame_ENST00000306107_ENST00000487799_TCGA-C8-A12L_ALCAM_chr3_105086325_+_EIF2A_chr3_150270142_length(transcript)=2340nt_BP=573nt AGAGCAGCCCGGAGACCGCTGCCGCCGCTGCCGCTGCTACCACCGCTGCCACCTGAGGAGACCCGCCGCCCCCCCGTCGCCGCCTCCTGC GAGTCCTTCTTAGCACCTGGCGTTTCATGCACATTGCCACTGCCATTATTATTATCATTCCAATACAAGGAAAATAAAAGAAGATACCAG CGAAAAGAACCGCTTACACCTTTCCGAATTACTCAAGTGTCTCCTGGAAACAGAGGGTCGTTGTCCCCGGAGGAGCAGCCGAAGGGCCCG TGGGCTGGTGTTGACCGGGAGGGAGGAGGAGTTGGGGGCATTGCGTGGTGGAAAGTTGCGTGCGGCAGAGAACCGAAGGTGCAGCGCCAC AGCCCAGGGGACGGTGTGTCTGGGAGAAGACGCTGCCCCTGCGTCGGGACCCGCCAGCGCGCGGGCACCGCGGGGCCCGGGACGACGCCC CCTCCTGCGGCGTGGACTCCGTCAGTGGCCCACCAAGAAGGAGGAGGAATATGGAATCCAAGGGGGCCAGTTCCTGCCGTCTGCTCTTCT GCCTCTTGATCTCCGCCACCGTCTTCAGGCCAGTCCGAGGATCAGAAGGACTGTACATGGTGAATGGACCACCACATTTTACAGAAAGCA CAGTGTTTCCAAGAGTAAATATTATCAGTGTCACTAACAAGGGACTACTGCACTCCTTCGACCTCCTGAAGGCAGTTTGCCTTGAATTCT CACCCAAAAATACTGTCCTGGCAACGTGGCAGCCTTACACTACTTCTAAAGATGGCACAGCTGGGATACCCAACCTACAACTTTATGATG TGAAAACTGGGACATGTTTGAAATCTTTCATCCAGAAAAAAATGCAAAATTGGTGTCCATCCTGGTCAGAAGATGAAACTCTTTGTGCCC GCAATGTTAACAATGAAGTTCACTTCTTTGAAAACAACAATTTTAACACAATTGCAAATAAATTGCATTTGCAAAAAATTAATGATTTTG TATTATCACCTGGACCCCAACCATACAAGGTGGCTGTCTATGTTCCAGGAAGTAAAGGTGCACCTTCATTTGTTAGATTATATCAGTACC CCAACTTTGCTGGACCTCATGCAGCTTTAGCTAATAAAAGTTTCTTTAAGGCAGATAAAGTTACAATGCTGTGGAATAAAAAAGCTACTG CTGTGTTGGTAATAGCTAGCACAGATGTTGACAAGACAGGAGCTTCCTACTATGGAGAACAAACTCTACACTACATTGCAACAAATGGAG AAAGTGCTGTAGTGCAATTACCAAAAAATGGCCCCATTTATGATGTAGTTTGGAATTCTAGTTCTACTGAGTTTTGTGCTGTATATGGTT TTATGCCTGCCAAAGCGACAATTTTCAACTTGAAATGTGATCCTGTATTTGACTTTGGAACTGGTCCTCGTAATGCAGCCTACTATAGCC CTCATGGACATATATTAGTATTAGCTGGATTTGGAAATCTGAGGGGACAAATGGAAGTGTGGGATGTGAAAAACTACAAACTTATTTCTA AACCGGTGGCTTCTGATTCTACATATTTTGCTTGGTGCCCGGATGGTGAGCATATTTTAACAGCTACATGTGCTCCCAGGTTACGGGTTA ATAATGGATACAAAATTTGGCATTATACTGGCTCTATCTTGCACAAGTATGATGTGCCATCAAATGCAGAATTATGGCAGGTTTCTTGGC AGCCATTTTTGGATGGAATATTTCCAGCAAAAACAATAACTTACCAAGCAGTTCCAAGTGAAGTACCCAATGAGGAACCTAAAGTTGCAA CAGCTTATAGACCCCCAGCTTTAAGAAATAAACCAATCACCAATTCCAAATTGCATGAAGAGGAACCACCTCAGAATATGAAACCACAAT CAGGAAACGATAAGCCATTATCAAAAACAGCTCTTAAAAATCAAAGGAAGCATGAAGCTAAGAAAGCTGCAAAGCAGGAAGCAAGAAGTG ACAAGAGTCCAGATTTGGCACCTACTCCTGCCCCACAGAGCACACCACGAAACACTGTCTCTCAGTCAATTTCTGGGGACCCTGAGATAG ACAAAAAAATCAAGAACCTAAAGAAGAAACTGAAAGCAATCGAACAACTGAAAGAACAAGCAGCAACTGGAAAACAGCTAGAAAAAAATC AGTTGGAGAAAATTCAGAAAGAAACAGCCCTTCTCCAGGAGCTGGAAGATTTGGAATTGGGTATTTAAAGATTCACGGAAAGCAAGTTGA TGACCAGAAATCAGTGCAAACACATCTTCTGTTAAACCCATTGGTATACACAGAATATTCCTGTGCCCACACTTAATGTCAATCTATAAT >In-frame_ENST00000306107_ENST00000487799_TCGA-C8-A12L_ALCAM_chr3_105086325_+_EIF2A_chr3_150270142_length(amino acids)=611AA_start in transcript=392_stop in transcript=2227 MPLRRDPPARGHRGARDDAPSCGVDSVSGPPRRRRNMESKGASSCRLLFCLLISATVFRPVRGSEGLYMVNGPPHFTESTVFPRVNIISV TNKGLLHSFDLLKAVCLEFSPKNTVLATWQPYTTSKDGTAGIPNLQLYDVKTGTCLKSFIQKKMQNWCPSWSEDETLCARNVNNEVHFFE NNNFNTIANKLHLQKINDFVLSPGPQPYKVAVYVPGSKGAPSFVRLYQYPNFAGPHAALANKSFFKADKVTMLWNKKATAVLVIASTDVD KTGASYYGEQTLHYIATNGESAVVQLPKNGPIYDVVWNSSSTEFCAVYGFMPAKATIFNLKCDPVFDFGTGPRNAAYYSPHGHILVLAGF GNLRGQMEVWDVKNYKLISKPVASDSTYFAWCPDGEHILTATCAPRLRVNNGYKIWHYTGSILHKYDVPSNAELWQVSWQPFLDGIFPAK TITYQAVPSEVPNEEPKVATAYRPPALRNKPITNSKLHEEEPPQNMKPQSGNDKPLSKTALKNQRKHEAKKAAKQEARSDKSPDLAPTPA -------------------------------------------------------------- >In-frame_ENST00000306107_ENST00000460851_TCGA-C8-A12L_ALCAM_chr3_105086325_+_EIF2A_chr3_150270142_length(transcript)=2634nt_BP=573nt AGAGCAGCCCGGAGACCGCTGCCGCCGCTGCCGCTGCTACCACCGCTGCCACCTGAGGAGACCCGCCGCCCCCCCGTCGCCGCCTCCTGC GAGTCCTTCTTAGCACCTGGCGTTTCATGCACATTGCCACTGCCATTATTATTATCATTCCAATACAAGGAAAATAAAAGAAGATACCAG CGAAAAGAACCGCTTACACCTTTCCGAATTACTCAAGTGTCTCCTGGAAACAGAGGGTCGTTGTCCCCGGAGGAGCAGCCGAAGGGCCCG TGGGCTGGTGTTGACCGGGAGGGAGGAGGAGTTGGGGGCATTGCGTGGTGGAAAGTTGCGTGCGGCAGAGAACCGAAGGTGCAGCGCCAC AGCCCAGGGGACGGTGTGTCTGGGAGAAGACGCTGCCCCTGCGTCGGGACCCGCCAGCGCGCGGGCACCGCGGGGCCCGGGACGACGCCC CCTCCTGCGGCGTGGACTCCGTCAGTGGCCCACCAAGAAGGAGGAGGAATATGGAATCCAAGGGGGCCAGTTCCTGCCGTCTGCTCTTCT GCCTCTTGATCTCCGCCACCGTCTTCAGGCCAGTCCGAGGATCAGAAGGACTGTACATGGTGAATGGACCACCACATTTTACAGAAAGCA CAGTGTTTCCAAGGGAATCTGGGAAGAATTGCAAAGTCTGTATCTTTAGTAAGGATGGGACCTTGTTTGCCTGGGGCAATGGAGAAAAAG TAAATATTATCAGTGTCACTAACAAGGGACTACTGCACTCCTTCGACCTCCTGAAGGCAGTTTGCCTTGAATTCTCACCCAAAAATACTG TCCTGGCAACGTGGCAGCCTTACACTACTTCTAAAGATGGCACAGCTGGGATACCCAACCTACAACTTTATGATGTGAAAACTGGGACAT GTTTGAAATCTTTCATCCAGAAAAAAATGCAAAATTGGTGTCCATCCTGGTCAGAAGATGAAACTCTTTGTGCCCGCAATGTTAACAATG AAGTTCACTTCTTTGAAAACAACAATTTTAACACAATTGCAAATAAATTGCATTTGCAAAAAATTAATGATTTTGTATTATCACCTGGAC CCCAACCATACAAGGTGGCTGTCTATGTTCCAGGAAGTAAAGGTGCACCTTCATTTGTTAGATTATATCAGTACCCCAACTTTGCTGGAC CTCATGCAGCTTTAGCTAATAAAAGTTTCTTTAAGGCAGATAAAGTTACAATGCTGTGGAATAAAAAAGCTACTGCTGTGTTGGTAATAG CTAGCACAGATGTTGACAAGACAGGAGCTTCCTACTATGGAGAACAAACTCTACACTACATTGCAACAAATGGAGAAAGTGCTGTAGTGC AATTACCAAAAAATGGCCCCATTTATGATGTAGTTTGGAATTCTAGTTCTACTGAGTTTTGTGCTGTATATGGTTTTATGCCTGCCAAAG CGACAATTTTCAACTTGAAATGTGATCCTGTATTTGACTTTGGAACTGGTCCTCGTAATGCAGCCTACTATAGCCCTCATGGACATATAT TAGTATTAGCTGGATTTGGAAATCTGAGGGGACAAATGGAAGTGTGGGATGTGAAAAACTACAAACTTATTTCTAAACCGGTGGCTTCTG ATTCTACATATTTTGCTTGGTGCCCGGATGGTGAGCATATTTTAACAGCTACATGTGCTCCCAGGTTACGGGTTAATAATGGATACAAAA TTTGGCATTATACTGGCTCTATCTTGCACAAGTATGATGTGCCATCAAATGCAGAATTATGGCAGGTTTCTTGGCAGCCATTTTTGGATG GAATATTTCCAGCAAAAACAATAACTTACCAAGCAGTTCCAAGTGAAGTACCCAATGAGGAACCTAAAGTTGCAACAGCTTATAGACCCC CAGCTTTAAGAAATAAACCAATCACCAATTCCAAATTGCATGAAGAGGAACCACCTCAGAATATGAAACCACAATCAGGAAACGATAAGC CATTATCAAAAACAGCTCTTAAAAATCAAAGGAAGCATGAAGCTAAGAAAGCTGCAAAGCAGGAAGCAAGAAGTGACAAGAGTCCAGATT TGGCACCTACTCCTGCCCCACAGAGCACACCACGAAACACTGTCTCTCAGTCAATTTCTGGGGACCCTGAGATAGACAAAAAAATCAAGA ACCTAAAGAAGAAACTGAAAGCAATCGAACAACTGAAAGAACAAGCAGCAACTGGAAAACAGCTAGAAAAAAATCAGTTGGAGAAAATTC AGAAAGAAACAGCCCTTCTCCAGGAGCTGGAAGATTTGGAATTGGGTATTTAAAGATTCACGGAAAGCAAGTTGATGACCAGAAATCAGT GCAAACACATCTTCTGTTAAACCCATTGGTATACACAGAATATTCCTGTGCCCACACTTAATGTCAATCTATAATTTTAACCATTTATCC AAGATTCTACTAAGTGTAAAATTATTTAATAATGTCTATTAAATTGATATTTATATCTTGCATCCTATATCATGTCAATATGTGATATAG AAAAGAGATACGTGAATTTTTTAGCTAAGCTTGACAGATTGAAAGACAAGTGTCATTTTTTTTTGTAGAGGGTGATATATACCATGTAAA >In-frame_ENST00000306107_ENST00000460851_TCGA-C8-A12L_ALCAM_chr3_105086325_+_EIF2A_chr3_150270142_length(amino acids)=636AA_start in transcript=392_stop in transcript=2302 MPLRRDPPARGHRGARDDAPSCGVDSVSGPPRRRRNMESKGASSCRLLFCLLISATVFRPVRGSEGLYMVNGPPHFTESTVFPRESGKNC KVCIFSKDGTLFAWGNGEKVNIISVTNKGLLHSFDLLKAVCLEFSPKNTVLATWQPYTTSKDGTAGIPNLQLYDVKTGTCLKSFIQKKMQ NWCPSWSEDETLCARNVNNEVHFFENNNFNTIANKLHLQKINDFVLSPGPQPYKVAVYVPGSKGAPSFVRLYQYPNFAGPHAALANKSFF KADKVTMLWNKKATAVLVIASTDVDKTGASYYGEQTLHYIATNGESAVVQLPKNGPIYDVVWNSSSTEFCAVYGFMPAKATIFNLKCDPV FDFGTGPRNAAYYSPHGHILVLAGFGNLRGQMEVWDVKNYKLISKPVASDSTYFAWCPDGEHILTATCAPRLRVNNGYKIWHYTGSILHK YDVPSNAELWQVSWQPFLDGIFPAKTITYQAVPSEVPNEEPKVATAYRPPALRNKPITNSKLHEEEPPQNMKPQSGNDKPLSKTALKNQR KHEAKKAAKQEARSDKSPDLAPTPAPQSTPRNTVSQSISGDPEIDKKIKNLKKKLKAIEQLKEQAATGKQLEKNQLEKIQKETALLQELE -------------------------------------------------------------- >In-frame_ENST00000306107_ENST00000406576_TCGA-C8-A12L_ALCAM_chr3_105086325_+_EIF2A_chr3_150270142_length(transcript)=2324nt_BP=573nt AGAGCAGCCCGGAGACCGCTGCCGCCGCTGCCGCTGCTACCACCGCTGCCACCTGAGGAGACCCGCCGCCCCCCCGTCGCCGCCTCCTGC GAGTCCTTCTTAGCACCTGGCGTTTCATGCACATTGCCACTGCCATTATTATTATCATTCCAATACAAGGAAAATAAAAGAAGATACCAG CGAAAAGAACCGCTTACACCTTTCCGAATTACTCAAGTGTCTCCTGGAAACAGAGGGTCGTTGTCCCCGGAGGAGCAGCCGAAGGGCCCG TGGGCTGGTGTTGACCGGGAGGGAGGAGGAGTTGGGGGCATTGCGTGGTGGAAAGTTGCGTGCGGCAGAGAACCGAAGGTGCAGCGCCAC AGCCCAGGGGACGGTGTGTCTGGGAGAAGACGCTGCCCCTGCGTCGGGACCCGCCAGCGCGCGGGCACCGCGGGGCCCGGGACGACGCCC CCTCCTGCGGCGTGGACTCCGTCAGTGGCCCACCAAGAAGGAGGAGGAATATGGAATCCAAGGGGGCCAGTTCCTGCCGTCTGCTCTTCT GCCTCTTGATCTCCGCCACCGTCTTCAGGCCAGTCCGAGGATCAGAAGGACTGTACATGGTGAATGGACCACCACATTTTACAGAAAGCA CAGTGTTTCCAAGGGAATCTGGGAAGAATTGCAAAGTCTGTATCTTTAGTAAGGATGGGACCTTGTTTGCCTGGGGCAATGGAGAAAAAG TAAATATTATCAGTGTCACTAACAAGGGACTACTGCACTCCTTCGACCTCCTGAAGGCAGTTTGCCTTGAATTCTCACCCAAAAATACTG TCCTGGCAACGTGGCAGCCTTACACTAACACAATTGCAAATAAATTGCATTTGCAAAAAATTAATGATTTTGTATTATCACCTGGACCCC AACCATACAAGGTGGCTGTCTATGTTCCAGGAAGTAAAGGTGCACCTTCATTTGTTAGATTATATCAGTACCCCAACTTTGCTGGACCTC ATGCAGCTTTAGCTAATAAAAGTTTCTTTAAGGCAGATAAAGTTACAATGCTGTGGAATAAAAAAGCTACTGCTGTGTTGGTAATAGCTA GCACAGATGTTGACAAGACAGGAGCTTCCTACTATGGAGAACAAACTCTACACTACATTGCAACAAATGGAGAAAGTGCTGTAGTGCAAT TACCAAAAAATGGCCCCATTTATGATGTAGTTTGGAATTCTAGTTCTACTGAGTTTTGTGCTGTATATGGTTTTATGCCTGCCAAAGCGA CAATTTTCAACTTGAAATGTGATCCTGTATTTGACTTTGGAACTGGTCCTCGTAATGCAGCCTACTATAGCCCTCATGGACATATATTAG TATTAGCTGGATTTGGAAATCTGAGGGGACAAATGGAAGTGTGGGATGTGAAAAACTACAAACTTATTTCTAAACCGGTGGCTTCTGATT CTACATATTTTGCTTGGTGCCCGGATGGTGAGCATATTTTAACAGCTACATGTGCTCCCAGGTTACGGGTTAATAATGGATACAAAATTT GGCATTATACTGGCTCTATCTTGCACAAGTATGATGTGCCATCAAATGCAGAATTATGGCAGGTTTCTTGGCAGCCATTTTTGGATGGAA TATTTCCAGCAAAAACAATAACTTACCAAGCAGTTCCAAGTGAAGTACCCAATGAGGAACCTAAAGTTGCAACAGCTTATAGACCCCCAG CTTTAAGAAATAAACCAATCACCAATTCCAAATTGCATGAAGAGGAACCACCTCAGAATATGAAACCACAATCAGGAAACGATAAGCCAT TATCAAAAACAGCTCTTAAAAATCAAAGGAAGCATGAAGCTAAGAAAGCTGCAAAGCAGGAAGCAAGAAGTGACAAGAGTCCAGATTTGG CACCTACTCCTGCCCCACAGAGCACACCACGAAACACTGTCTCTCAGTCAATTTCTGGGGACCCTGAGATAGACAAAAAAATCAAGAACC TAAAGAAGAAACTGAAAGCAATCGAACAACTGAAAGAACAAGCAGCAACTGGAAAACAGCTAGAAAAAAATCAGTTGGAGAAAATTCAGA AAGAAACAGCCCTTCTCCAGGAGCTGGAAGATTTGGAATTGGGTATTTAAAGATTCACGGAAAGCAAGTTGATGACCAGAAATCAGTGCA AACACATCTTCTGTTAAACCCATTGGTATACACAGAATATTCCTGTGCCCACACTTAATGTCAATCTATAATTTTAACCATTTATCCAAG >In-frame_ENST00000306107_ENST00000406576_TCGA-C8-A12L_ALCAM_chr3_105086325_+_EIF2A_chr3_150270142_length(amino acids)=575AA_start in transcript=392_stop in transcript=2119 MPLRRDPPARGHRGARDDAPSCGVDSVSGPPRRRRNMESKGASSCRLLFCLLISATVFRPVRGSEGLYMVNGPPHFTESTVFPRESGKNC KVCIFSKDGTLFAWGNGEKVNIISVTNKGLLHSFDLLKAVCLEFSPKNTVLATWQPYTNTIANKLHLQKINDFVLSPGPQPYKVAVYVPG SKGAPSFVRLYQYPNFAGPHAALANKSFFKADKVTMLWNKKATAVLVIASTDVDKTGASYYGEQTLHYIATNGESAVVQLPKNGPIYDVV WNSSSTEFCAVYGFMPAKATIFNLKCDPVFDFGTGPRNAAYYSPHGHILVLAGFGNLRGQMEVWDVKNYKLISKPVASDSTYFAWCPDGE HILTATCAPRLRVNNGYKIWHYTGSILHKYDVPSNAELWQVSWQPFLDGIFPAKTITYQAVPSEVPNEEPKVATAYRPPALRNKPITNSK LHEEEPPQNMKPQSGNDKPLSKTALKNQRKHEAKKAAKQEARSDKSPDLAPTPAPQSTPRNTVSQSISGDPEIDKKIKNLKKKLKAIEQL -------------------------------------------------------------- >In-frame_ENST00000306107_ENST00000273435_TCGA-C8-A12L_ALCAM_chr3_105086325_+_EIF2A_chr3_150270142_length(transcript)=2619nt_BP=573nt AGAGCAGCCCGGAGACCGCTGCCGCCGCTGCCGCTGCTACCACCGCTGCCACCTGAGGAGACCCGCCGCCCCCCCGTCGCCGCCTCCTGC GAGTCCTTCTTAGCACCTGGCGTTTCATGCACATTGCCACTGCCATTATTATTATCATTCCAATACAAGGAAAATAAAAGAAGATACCAG CGAAAAGAACCGCTTACACCTTTCCGAATTACTCAAGTGTCTCCTGGAAACAGAGGGTCGTTGTCCCCGGAGGAGCAGCCGAAGGGCCCG TGGGCTGGTGTTGACCGGGAGGGAGGAGGAGTTGGGGGCATTGCGTGGTGGAAAGTTGCGTGCGGCAGAGAACCGAAGGTGCAGCGCCAC AGCCCAGGGGACGGTGTGTCTGGGAGAAGACGCTGCCCCTGCGTCGGGACCCGCCAGCGCGCGGGCACCGCGGGGCCCGGGACGACGCCC CCTCCTGCGGCGTGGACTCCGTCAGTGGCCCACCAAGAAGGAGGAGGAATATGGAATCCAAGGGGGCCAGTTCCTGCCGTCTGCTCTTCT GCCTCTTGATCTCCGCCACCGTCTTCAGGCCAGTCCGAGGATCAGAAGGACTGTACATGGTGAATGGACCACCACATTTTACAGAAAGCA CAGTGTTTCCAAGGGAATCTGGGAAGAATTGCAAAGTCTGTATCTTTAGTAAGGATGGGACCTTGTTTGCCTGGGGCAATGGAGAAAATG TCACTAACAAGGGACTACTGCACTCCTTCGACCTCCTGAAGGCAGTTTGCCTTGAATTCTCACCCAAAAATACTGTCCTGGCAACGTGGC AGCCTTACACTACTTCTAAAGATGGCACAGCTGGGATACCCAACCTACAACTTTATGATGTGAAAACTGGGACATGTTTGAAATCTTTCA TCCAGAAAAAAATGCAAAATTGGTGTCCATCCTGGTCAGAAGATGAAACTCTTTGTGCCCGCAATGTTAACAATGAAGTTCACTTCTTTG AAAACAACAATTTTAACACAATTGCAAATAAATTGCATTTGCAAAAAATTAATGATTTTGTATTATCACCTGGACCCCAACCATACAAGG TGGCTGTCTATGTTCCAGGAAGTAAAGGTGCACCTTCATTTGTTAGATTATATCAGTACCCCAACTTTGCTGGACCTCATGCAGCTTTAG CTAATAAAAGTTTCTTTAAGGCAGATAAAGTTACAATGCTGTGGAATAAAAAAGCTACTGCTGTGTTGGTAATAGCTAGCACAGATGTTG ACAAGACAGGAGCTTCCTACTATGGAGAACAAACTCTACACTACATTGCAACAAATGGAGAAAGTGCTGTAGTGCAATTACCAAAAAATG GCCCCATTTATGATGTAGTTTGGAATTCTAGTTCTACTGAGTTTTGTGCTGTATATGGTTTTATGCCTGCCAAAGCGACAATTTTCAACT TGAAATGTGATCCTGTATTTGACTTTGGAACTGGTCCTCGTAATGCAGCCTACTATAGCCCTCATGGACATATATTAGTATTAGCTGGAT TTGGAAATCTGAGGGGACAAATGGAAGTGTGGGATGTGAAAAACTACAAACTTATTTCTAAACCGGTGGCTTCTGATTCTACATATTTTG CTTGGTGCCCGGATGGTGAGCATATTTTAACAGCTACATGTGCTCCCAGGTTACGGGTTAATAATGGATACAAAATTTGGCATTATACTG GCTCTATCTTGCACAAGTATGATGTGCCATCAAATGCAGAATTATGGCAGGTTTCTTGGCAGCCATTTTTGGATGGAATATTTCCAGCAA AAACAATAACTTACCAAGCAGTTCCAAGTGAAGTACCCAATGAGGAACCTAAAGTTGCAACAGCTTATAGACCCCCAGCTTTAAGAAATA AACCAATCACCAATTCCAAATTGCATGAAGAGGAACCACCTCAGAATATGAAACCACAATCAGGAAACGATAAGCCATTATCAAAAACAG CTCTTAAAAATCAAAGGAAGCATGAAGCTAAGAAAGCTGCAAAGCAGGAAGCAAGAAGTGACAAGAGTCCAGATTTGGCACCTACTCCTG CCCCACAGAGCACACCACGAAACACTGTCTCTCAGTCAATTTCTGGGGACCCTGAGATAGACAAAAAAATCAAGAACCTAAAGAAGAAAC TGAAAGCAATCGAACAACTGAAAGAACAAGCAGCAACTGGAAAACAGCTAGAAAAAAATCAGTTGGAGAAAATTCAGAAAGAAACAGCCC TTCTCCAGGAGCTGGAAGATTTGGAATTGGGTATTTAAAGATTCACGGAAAGCAAGTTGATGACCAGAAATCAGTGCAAACACATCTTCT GTTAAACCCATTGGTATACACAGAATATTCCTGTGCCCACACTTAATGTCAATCTATAATTTTAACCATTTATCCAAGATTCTACTAAGT GTAAAATTATTTAATAATGTCTATTAAATTGATATTTATATCTTGCATCCTATATCATGTCAATATGTGATATAGAAAAGAGATACGTGA ATTTTTTAGCTAAGCTTGACAGATTGAAAGACAAGTGTCATTTTTTTTTGTAGAGGGTGATATATACCATGTAAATGAACAAAGACATTT >In-frame_ENST00000306107_ENST00000273435_TCGA-C8-A12L_ALCAM_chr3_105086325_+_EIF2A_chr3_150270142_length(amino acids)=631AA_start in transcript=392_stop in transcript=2287 MPLRRDPPARGHRGARDDAPSCGVDSVSGPPRRRRNMESKGASSCRLLFCLLISATVFRPVRGSEGLYMVNGPPHFTESTVFPRESGKNC KVCIFSKDGTLFAWGNGENVTNKGLLHSFDLLKAVCLEFSPKNTVLATWQPYTTSKDGTAGIPNLQLYDVKTGTCLKSFIQKKMQNWCPS WSEDETLCARNVNNEVHFFENNNFNTIANKLHLQKINDFVLSPGPQPYKVAVYVPGSKGAPSFVRLYQYPNFAGPHAALANKSFFKADKV TMLWNKKATAVLVIASTDVDKTGASYYGEQTLHYIATNGESAVVQLPKNGPIYDVVWNSSSTEFCAVYGFMPAKATIFNLKCDPVFDFGT GPRNAAYYSPHGHILVLAGFGNLRGQMEVWDVKNYKLISKPVASDSTYFAWCPDGEHILTATCAPRLRVNNGYKIWHYTGSILHKYDVPS NAELWQVSWQPFLDGIFPAKTITYQAVPSEVPNEEPKVATAYRPPALRNKPITNSKLHEEEPPQNMKPQSGNDKPLSKTALKNQRKHEAK KAAKQEARSDKSPDLAPTPAPQSTPRNTVSQSISGDPEIDKKIKNLKKKLKAIEQLKEQAATGKQLEKNQLEKIQKETALLQELEDLELG -------------------------------------------------------------- >In-frame_ENST00000472644_ENST00000487799_TCGA-C8-A12L_ALCAM_chr3_105086325_+_EIF2A_chr3_150270142_length(transcript)=1906nt_BP=139nt GCCCGGGACGACGCCCCCTCCTGCGGCGTGGACTCCGTCAGTGGCCCACCAAGAAGGAGGAGGAATATGGAATCCAAGGGGGCCAGTTCC TGCCGTCTGCTCTTCTGCCTCTTGATCTCCGCCACCGTCTTCAGGCCAGTCCGAGGATCAGAAGGACTGTACATGGTGAATGGACCACCA CATTTTACAGAAAGCACAGTGTTTCCAAGAGTAAATATTATCAGTGTCACTAACAAGGGACTACTGCACTCCTTCGACCTCCTGAAGGCA GTTTGCCTTGAATTCTCACCCAAAAATACTGTCCTGGCAACGTGGCAGCCTTACACTACTTCTAAAGATGGCACAGCTGGGATACCCAAC CTACAACTTTATGATGTGAAAACTGGGACATGTTTGAAATCTTTCATCCAGAAAAAAATGCAAAATTGGTGTCCATCCTGGTCAGAAGAT GAAACTCTTTGTGCCCGCAATGTTAACAATGAAGTTCACTTCTTTGAAAACAACAATTTTAACACAATTGCAAATAAATTGCATTTGCAA AAAATTAATGATTTTGTATTATCACCTGGACCCCAACCATACAAGGTGGCTGTCTATGTTCCAGGAAGTAAAGGTGCACCTTCATTTGTT AGATTATATCAGTACCCCAACTTTGCTGGACCTCATGCAGCTTTAGCTAATAAAAGTTTCTTTAAGGCAGATAAAGTTACAATGCTGTGG AATAAAAAAGCTACTGCTGTGTTGGTAATAGCTAGCACAGATGTTGACAAGACAGGAGCTTCCTACTATGGAGAACAAACTCTACACTAC ATTGCAACAAATGGAGAAAGTGCTGTAGTGCAATTACCAAAAAATGGCCCCATTTATGATGTAGTTTGGAATTCTAGTTCTACTGAGTTT TGTGCTGTATATGGTTTTATGCCTGCCAAAGCGACAATTTTCAACTTGAAATGTGATCCTGTATTTGACTTTGGAACTGGTCCTCGTAAT GCAGCCTACTATAGCCCTCATGGACATATATTAGTATTAGCTGGATTTGGAAATCTGAGGGGACAAATGGAAGTGTGGGATGTGAAAAAC TACAAACTTATTTCTAAACCGGTGGCTTCTGATTCTACATATTTTGCTTGGTGCCCGGATGGTGAGCATATTTTAACAGCTACATGTGCT CCCAGGTTACGGGTTAATAATGGATACAAAATTTGGCATTATACTGGCTCTATCTTGCACAAGTATGATGTGCCATCAAATGCAGAATTA TGGCAGGTTTCTTGGCAGCCATTTTTGGATGGAATATTTCCAGCAAAAACAATAACTTACCAAGCAGTTCCAAGTGAAGTACCCAATGAG GAACCTAAAGTTGCAACAGCTTATAGACCCCCAGCTTTAAGAAATAAACCAATCACCAATTCCAAATTGCATGAAGAGGAACCACCTCAG AATATGAAACCACAATCAGGAAACGATAAGCCATTATCAAAAACAGCTCTTAAAAATCAAAGGAAGCATGAAGCTAAGAAAGCTGCAAAG CAGGAAGCAAGAAGTGACAAGAGTCCAGATTTGGCACCTACTCCTGCCCCACAGAGCACACCACGAAACACTGTCTCTCAGTCAATTTCT GGGGACCCTGAGATAGACAAAAAAATCAAGAACCTAAAGAAGAAACTGAAAGCAATCGAACAACTGAAAGAACAAGCAGCAACTGGAAAA CAGCTAGAAAAAAATCAGTTGGAGAAAATTCAGAAAGAAACAGCCCTTCTCCAGGAGCTGGAAGATTTGGAATTGGGTATTTAAAGATTC ACGGAAAGCAAGTTGATGACCAGAAATCAGTGCAAACACATCTTCTGTTAAACCCATTGGTATACACAGAATATTCCTGTGCCCACACTT >In-frame_ENST00000472644_ENST00000487799_TCGA-C8-A12L_ALCAM_chr3_105086325_+_EIF2A_chr3_150270142_length(amino acids)=575AA_start in transcript=66_stop in transcript=1793 MESKGASSCRLLFCLLISATVFRPVRGSEGLYMVNGPPHFTESTVFPRVNIISVTNKGLLHSFDLLKAVCLEFSPKNTVLATWQPYTTSK DGTAGIPNLQLYDVKTGTCLKSFIQKKMQNWCPSWSEDETLCARNVNNEVHFFENNNFNTIANKLHLQKINDFVLSPGPQPYKVAVYVPG SKGAPSFVRLYQYPNFAGPHAALANKSFFKADKVTMLWNKKATAVLVIASTDVDKTGASYYGEQTLHYIATNGESAVVQLPKNGPIYDVV WNSSSTEFCAVYGFMPAKATIFNLKCDPVFDFGTGPRNAAYYSPHGHILVLAGFGNLRGQMEVWDVKNYKLISKPVASDSTYFAWCPDGE HILTATCAPRLRVNNGYKIWHYTGSILHKYDVPSNAELWQVSWQPFLDGIFPAKTITYQAVPSEVPNEEPKVATAYRPPALRNKPITNSK LHEEEPPQNMKPQSGNDKPLSKTALKNQRKHEAKKAAKQEARSDKSPDLAPTPAPQSTPRNTVSQSISGDPEIDKKIKNLKKKLKAIEQL -------------------------------------------------------------- >In-frame_ENST00000472644_ENST00000460851_TCGA-C8-A12L_ALCAM_chr3_105086325_+_EIF2A_chr3_150270142_length(transcript)=2200nt_BP=139nt GCCCGGGACGACGCCCCCTCCTGCGGCGTGGACTCCGTCAGTGGCCCACCAAGAAGGAGGAGGAATATGGAATCCAAGGGGGCCAGTTCC TGCCGTCTGCTCTTCTGCCTCTTGATCTCCGCCACCGTCTTCAGGCCAGTCCGAGGATCAGAAGGACTGTACATGGTGAATGGACCACCA CATTTTACAGAAAGCACAGTGTTTCCAAGGGAATCTGGGAAGAATTGCAAAGTCTGTATCTTTAGTAAGGATGGGACCTTGTTTGCCTGG GGCAATGGAGAAAAAGTAAATATTATCAGTGTCACTAACAAGGGACTACTGCACTCCTTCGACCTCCTGAAGGCAGTTTGCCTTGAATTC TCACCCAAAAATACTGTCCTGGCAACGTGGCAGCCTTACACTACTTCTAAAGATGGCACAGCTGGGATACCCAACCTACAACTTTATGAT GTGAAAACTGGGACATGTTTGAAATCTTTCATCCAGAAAAAAATGCAAAATTGGTGTCCATCCTGGTCAGAAGATGAAACTCTTTGTGCC CGCAATGTTAACAATGAAGTTCACTTCTTTGAAAACAACAATTTTAACACAATTGCAAATAAATTGCATTTGCAAAAAATTAATGATTTT GTATTATCACCTGGACCCCAACCATACAAGGTGGCTGTCTATGTTCCAGGAAGTAAAGGTGCACCTTCATTTGTTAGATTATATCAGTAC CCCAACTTTGCTGGACCTCATGCAGCTTTAGCTAATAAAAGTTTCTTTAAGGCAGATAAAGTTACAATGCTGTGGAATAAAAAAGCTACT GCTGTGTTGGTAATAGCTAGCACAGATGTTGACAAGACAGGAGCTTCCTACTATGGAGAACAAACTCTACACTACATTGCAACAAATGGA GAAAGTGCTGTAGTGCAATTACCAAAAAATGGCCCCATTTATGATGTAGTTTGGAATTCTAGTTCTACTGAGTTTTGTGCTGTATATGGT TTTATGCCTGCCAAAGCGACAATTTTCAACTTGAAATGTGATCCTGTATTTGACTTTGGAACTGGTCCTCGTAATGCAGCCTACTATAGC CCTCATGGACATATATTAGTATTAGCTGGATTTGGAAATCTGAGGGGACAAATGGAAGTGTGGGATGTGAAAAACTACAAACTTATTTCT AAACCGGTGGCTTCTGATTCTACATATTTTGCTTGGTGCCCGGATGGTGAGCATATTTTAACAGCTACATGTGCTCCCAGGTTACGGGTT AATAATGGATACAAAATTTGGCATTATACTGGCTCTATCTTGCACAAGTATGATGTGCCATCAAATGCAGAATTATGGCAGGTTTCTTGG CAGCCATTTTTGGATGGAATATTTCCAGCAAAAACAATAACTTACCAAGCAGTTCCAAGTGAAGTACCCAATGAGGAACCTAAAGTTGCA ACAGCTTATAGACCCCCAGCTTTAAGAAATAAACCAATCACCAATTCCAAATTGCATGAAGAGGAACCACCTCAGAATATGAAACCACAA TCAGGAAACGATAAGCCATTATCAAAAACAGCTCTTAAAAATCAAAGGAAGCATGAAGCTAAGAAAGCTGCAAAGCAGGAAGCAAGAAGT GACAAGAGTCCAGATTTGGCACCTACTCCTGCCCCACAGAGCACACCACGAAACACTGTCTCTCAGTCAATTTCTGGGGACCCTGAGATA GACAAAAAAATCAAGAACCTAAAGAAGAAACTGAAAGCAATCGAACAACTGAAAGAACAAGCAGCAACTGGAAAACAGCTAGAAAAAAAT CAGTTGGAGAAAATTCAGAAAGAAACAGCCCTTCTCCAGGAGCTGGAAGATTTGGAATTGGGTATTTAAAGATTCACGGAAAGCAAGTTG ATGACCAGAAATCAGTGCAAACACATCTTCTGTTAAACCCATTGGTATACACAGAATATTCCTGTGCCCACACTTAATGTCAATCTATAA TTTTAACCATTTATCCAAGATTCTACTAAGTGTAAAATTATTTAATAATGTCTATTAAATTGATATTTATATCTTGCATCCTATATCATG TCAATATGTGATATAGAAAAGAGATACGTGAATTTTTTAGCTAAGCTTGACAGATTGAAAGACAAGTGTCATTTTTTTTTGTAGAGGGTG >In-frame_ENST00000472644_ENST00000460851_TCGA-C8-A12L_ALCAM_chr3_105086325_+_EIF2A_chr3_150270142_length(amino acids)=600AA_start in transcript=66_stop in transcript=1868 MESKGASSCRLLFCLLISATVFRPVRGSEGLYMVNGPPHFTESTVFPRESGKNCKVCIFSKDGTLFAWGNGEKVNIISVTNKGLLHSFDL LKAVCLEFSPKNTVLATWQPYTTSKDGTAGIPNLQLYDVKTGTCLKSFIQKKMQNWCPSWSEDETLCARNVNNEVHFFENNNFNTIANKL HLQKINDFVLSPGPQPYKVAVYVPGSKGAPSFVRLYQYPNFAGPHAALANKSFFKADKVTMLWNKKATAVLVIASTDVDKTGASYYGEQT LHYIATNGESAVVQLPKNGPIYDVVWNSSSTEFCAVYGFMPAKATIFNLKCDPVFDFGTGPRNAAYYSPHGHILVLAGFGNLRGQMEVWD VKNYKLISKPVASDSTYFAWCPDGEHILTATCAPRLRVNNGYKIWHYTGSILHKYDVPSNAELWQVSWQPFLDGIFPAKTITYQAVPSEV PNEEPKVATAYRPPALRNKPITNSKLHEEEPPQNMKPQSGNDKPLSKTALKNQRKHEAKKAAKQEARSDKSPDLAPTPAPQSTPRNTVSQ -------------------------------------------------------------- >In-frame_ENST00000472644_ENST00000406576_TCGA-C8-A12L_ALCAM_chr3_105086325_+_EIF2A_chr3_150270142_length(transcript)=1890nt_BP=139nt GCCCGGGACGACGCCCCCTCCTGCGGCGTGGACTCCGTCAGTGGCCCACCAAGAAGGAGGAGGAATATGGAATCCAAGGGGGCCAGTTCC TGCCGTCTGCTCTTCTGCCTCTTGATCTCCGCCACCGTCTTCAGGCCAGTCCGAGGATCAGAAGGACTGTACATGGTGAATGGACCACCA CATTTTACAGAAAGCACAGTGTTTCCAAGGGAATCTGGGAAGAATTGCAAAGTCTGTATCTTTAGTAAGGATGGGACCTTGTTTGCCTGG GGCAATGGAGAAAAAGTAAATATTATCAGTGTCACTAACAAGGGACTACTGCACTCCTTCGACCTCCTGAAGGCAGTTTGCCTTGAATTC TCACCCAAAAATACTGTCCTGGCAACGTGGCAGCCTTACACTAACACAATTGCAAATAAATTGCATTTGCAAAAAATTAATGATTTTGTA TTATCACCTGGACCCCAACCATACAAGGTGGCTGTCTATGTTCCAGGAAGTAAAGGTGCACCTTCATTTGTTAGATTATATCAGTACCCC AACTTTGCTGGACCTCATGCAGCTTTAGCTAATAAAAGTTTCTTTAAGGCAGATAAAGTTACAATGCTGTGGAATAAAAAAGCTACTGCT GTGTTGGTAATAGCTAGCACAGATGTTGACAAGACAGGAGCTTCCTACTATGGAGAACAAACTCTACACTACATTGCAACAAATGGAGAA AGTGCTGTAGTGCAATTACCAAAAAATGGCCCCATTTATGATGTAGTTTGGAATTCTAGTTCTACTGAGTTTTGTGCTGTATATGGTTTT ATGCCTGCCAAAGCGACAATTTTCAACTTGAAATGTGATCCTGTATTTGACTTTGGAACTGGTCCTCGTAATGCAGCCTACTATAGCCCT CATGGACATATATTAGTATTAGCTGGATTTGGAAATCTGAGGGGACAAATGGAAGTGTGGGATGTGAAAAACTACAAACTTATTTCTAAA CCGGTGGCTTCTGATTCTACATATTTTGCTTGGTGCCCGGATGGTGAGCATATTTTAACAGCTACATGTGCTCCCAGGTTACGGGTTAAT AATGGATACAAAATTTGGCATTATACTGGCTCTATCTTGCACAAGTATGATGTGCCATCAAATGCAGAATTATGGCAGGTTTCTTGGCAG CCATTTTTGGATGGAATATTTCCAGCAAAAACAATAACTTACCAAGCAGTTCCAAGTGAAGTACCCAATGAGGAACCTAAAGTTGCAACA GCTTATAGACCCCCAGCTTTAAGAAATAAACCAATCACCAATTCCAAATTGCATGAAGAGGAACCACCTCAGAATATGAAACCACAATCA GGAAACGATAAGCCATTATCAAAAACAGCTCTTAAAAATCAAAGGAAGCATGAAGCTAAGAAAGCTGCAAAGCAGGAAGCAAGAAGTGAC AAGAGTCCAGATTTGGCACCTACTCCTGCCCCACAGAGCACACCACGAAACACTGTCTCTCAGTCAATTTCTGGGGACCCTGAGATAGAC AAAAAAATCAAGAACCTAAAGAAGAAACTGAAAGCAATCGAACAACTGAAAGAACAAGCAGCAACTGGAAAACAGCTAGAAAAAAATCAG TTGGAGAAAATTCAGAAAGAAACAGCCCTTCTCCAGGAGCTGGAAGATTTGGAATTGGGTATTTAAAGATTCACGGAAAGCAAGTTGATG ACCAGAAATCAGTGCAAACACATCTTCTGTTAAACCCATTGGTATACACAGAATATTCCTGTGCCCACACTTAATGTCAATCTATAATTT TAACCATTTATCCAAGATTCTACTAAGTGTAAAATTATTTAATAATGTCTATTAAATTGATATTTATATCTTGCATCCTATATCATGTCA >In-frame_ENST00000472644_ENST00000406576_TCGA-C8-A12L_ALCAM_chr3_105086325_+_EIF2A_chr3_150270142_length(amino acids)=539AA_start in transcript=66_stop in transcript=1685 MESKGASSCRLLFCLLISATVFRPVRGSEGLYMVNGPPHFTESTVFPRESGKNCKVCIFSKDGTLFAWGNGEKVNIISVTNKGLLHSFDL LKAVCLEFSPKNTVLATWQPYTNTIANKLHLQKINDFVLSPGPQPYKVAVYVPGSKGAPSFVRLYQYPNFAGPHAALANKSFFKADKVTM LWNKKATAVLVIASTDVDKTGASYYGEQTLHYIATNGESAVVQLPKNGPIYDVVWNSSSTEFCAVYGFMPAKATIFNLKCDPVFDFGTGP RNAAYYSPHGHILVLAGFGNLRGQMEVWDVKNYKLISKPVASDSTYFAWCPDGEHILTATCAPRLRVNNGYKIWHYTGSILHKYDVPSNA ELWQVSWQPFLDGIFPAKTITYQAVPSEVPNEEPKVATAYRPPALRNKPITNSKLHEEEPPQNMKPQSGNDKPLSKTALKNQRKHEAKKA -------------------------------------------------------------- >In-frame_ENST00000472644_ENST00000273435_TCGA-C8-A12L_ALCAM_chr3_105086325_+_EIF2A_chr3_150270142_length(transcript)=2185nt_BP=139nt GCCCGGGACGACGCCCCCTCCTGCGGCGTGGACTCCGTCAGTGGCCCACCAAGAAGGAGGAGGAATATGGAATCCAAGGGGGCCAGTTCC TGCCGTCTGCTCTTCTGCCTCTTGATCTCCGCCACCGTCTTCAGGCCAGTCCGAGGATCAGAAGGACTGTACATGGTGAATGGACCACCA CATTTTACAGAAAGCACAGTGTTTCCAAGGGAATCTGGGAAGAATTGCAAAGTCTGTATCTTTAGTAAGGATGGGACCTTGTTTGCCTGG GGCAATGGAGAAAATGTCACTAACAAGGGACTACTGCACTCCTTCGACCTCCTGAAGGCAGTTTGCCTTGAATTCTCACCCAAAAATACT GTCCTGGCAACGTGGCAGCCTTACACTACTTCTAAAGATGGCACAGCTGGGATACCCAACCTACAACTTTATGATGTGAAAACTGGGACA TGTTTGAAATCTTTCATCCAGAAAAAAATGCAAAATTGGTGTCCATCCTGGTCAGAAGATGAAACTCTTTGTGCCCGCAATGTTAACAAT GAAGTTCACTTCTTTGAAAACAACAATTTTAACACAATTGCAAATAAATTGCATTTGCAAAAAATTAATGATTTTGTATTATCACCTGGA CCCCAACCATACAAGGTGGCTGTCTATGTTCCAGGAAGTAAAGGTGCACCTTCATTTGTTAGATTATATCAGTACCCCAACTTTGCTGGA CCTCATGCAGCTTTAGCTAATAAAAGTTTCTTTAAGGCAGATAAAGTTACAATGCTGTGGAATAAAAAAGCTACTGCTGTGTTGGTAATA GCTAGCACAGATGTTGACAAGACAGGAGCTTCCTACTATGGAGAACAAACTCTACACTACATTGCAACAAATGGAGAAAGTGCTGTAGTG CAATTACCAAAAAATGGCCCCATTTATGATGTAGTTTGGAATTCTAGTTCTACTGAGTTTTGTGCTGTATATGGTTTTATGCCTGCCAAA GCGACAATTTTCAACTTGAAATGTGATCCTGTATTTGACTTTGGAACTGGTCCTCGTAATGCAGCCTACTATAGCCCTCATGGACATATA TTAGTATTAGCTGGATTTGGAAATCTGAGGGGACAAATGGAAGTGTGGGATGTGAAAAACTACAAACTTATTTCTAAACCGGTGGCTTCT GATTCTACATATTTTGCTTGGTGCCCGGATGGTGAGCATATTTTAACAGCTACATGTGCTCCCAGGTTACGGGTTAATAATGGATACAAA ATTTGGCATTATACTGGCTCTATCTTGCACAAGTATGATGTGCCATCAAATGCAGAATTATGGCAGGTTTCTTGGCAGCCATTTTTGGAT GGAATATTTCCAGCAAAAACAATAACTTACCAAGCAGTTCCAAGTGAAGTACCCAATGAGGAACCTAAAGTTGCAACAGCTTATAGACCC CCAGCTTTAAGAAATAAACCAATCACCAATTCCAAATTGCATGAAGAGGAACCACCTCAGAATATGAAACCACAATCAGGAAACGATAAG CCATTATCAAAAACAGCTCTTAAAAATCAAAGGAAGCATGAAGCTAAGAAAGCTGCAAAGCAGGAAGCAAGAAGTGACAAGAGTCCAGAT TTGGCACCTACTCCTGCCCCACAGAGCACACCACGAAACACTGTCTCTCAGTCAATTTCTGGGGACCCTGAGATAGACAAAAAAATCAAG AACCTAAAGAAGAAACTGAAAGCAATCGAACAACTGAAAGAACAAGCAGCAACTGGAAAACAGCTAGAAAAAAATCAGTTGGAGAAAATT CAGAAAGAAACAGCCCTTCTCCAGGAGCTGGAAGATTTGGAATTGGGTATTTAAAGATTCACGGAAAGCAAGTTGATGACCAGAAATCAG TGCAAACACATCTTCTGTTAAACCCATTGGTATACACAGAATATTCCTGTGCCCACACTTAATGTCAATCTATAATTTTAACCATTTATC CAAGATTCTACTAAGTGTAAAATTATTTAATAATGTCTATTAAATTGATATTTATATCTTGCATCCTATATCATGTCAATATGTGATATA GAAAAGAGATACGTGAATTTTTTAGCTAAGCTTGACAGATTGAAAGACAAGTGTCATTTTTTTTTGTAGAGGGTGATATATACCATGTAA >In-frame_ENST00000472644_ENST00000273435_TCGA-C8-A12L_ALCAM_chr3_105086325_+_EIF2A_chr3_150270142_length(amino acids)=595AA_start in transcript=66_stop in transcript=1853 MESKGASSCRLLFCLLISATVFRPVRGSEGLYMVNGPPHFTESTVFPRESGKNCKVCIFSKDGTLFAWGNGENVTNKGLLHSFDLLKAVC LEFSPKNTVLATWQPYTTSKDGTAGIPNLQLYDVKTGTCLKSFIQKKMQNWCPSWSEDETLCARNVNNEVHFFENNNFNTIANKLHLQKI NDFVLSPGPQPYKVAVYVPGSKGAPSFVRLYQYPNFAGPHAALANKSFFKADKVTMLWNKKATAVLVIASTDVDKTGASYYGEQTLHYIA TNGESAVVQLPKNGPIYDVVWNSSSTEFCAVYGFMPAKATIFNLKCDPVFDFGTGPRNAAYYSPHGHILVLAGFGNLRGQMEVWDVKNYK LISKPVASDSTYFAWCPDGEHILTATCAPRLRVNNGYKIWHYTGSILHKYDVPSNAELWQVSWQPFLDGIFPAKTITYQAVPSEVPNEEP KVATAYRPPALRNKPITNSKLHEEEPPQNMKPQSGNDKPLSKTALKNQRKHEAKKAAKQEARSDKSPDLAPTPAPQSTPRNTVSQSISGD -------------------------------------------------------------- |
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Fusion Gene PPI Analysis for ALCAM-EIF2A |
Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in |
Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
Hgene | Hgene's interactors | Tgene | Tgene's interactors |
- Retained PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
- Lost PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
- Retained PPIs, but lost function due to frame-shift fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Related Drugs for ALCAM-EIF2A |
Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.8 2021-05-08) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
Tgene | EIF2A | Q9P2K8 | DB12010 | Fostamatinib | Inhibitor | Small molecule | Approved|Investigational |
Tgene | EIF2A | Q9P2K8 | DB12010 | Fostamatinib | Inhibitor | Small molecule | Approved|Investigational |
Tgene | EIF2A | Q9P2K8 | DB12010 | Fostamatinib | Inhibitor | Small molecule | Approved|Investigational |
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Related Diseases for ALCAM-EIF2A |
Diseases associated with fusion partners. (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Hgene | ALCAM | C0007097 | Carcinoma | 1 | CTD_human |
Hgene | ALCAM | C0024667 | Animal Mammary Neoplasms | 1 | CTD_human |
Hgene | ALCAM | C0024668 | Mammary Neoplasms, Experimental | 1 | CTD_human |
Hgene | ALCAM | C0205696 | Anaplastic carcinoma | 1 | CTD_human |
Hgene | ALCAM | C0205697 | Carcinoma, Spindle-Cell | 1 | CTD_human |
Hgene | ALCAM | C0205698 | Undifferentiated carcinoma | 1 | CTD_human |
Hgene | ALCAM | C0205699 | Carcinomatosis | 1 | CTD_human |
Hgene | ALCAM | C1257925 | Mammary Carcinoma, Animal | 1 | CTD_human |
Tgene | EIF2A | C0014544 | Epilepsy | 1 | GENOMICS_ENGLAND |
Tgene | EIF2A | C0035126 | Reperfusion Injury | 1 | CTD_human |
Tgene | EIF2A | C0151744 | Myocardial Ischemia | 1 | CTD_human |
Tgene | EIF2A | C3714756 | Intellectual Disability | 1 | GENOMICS_ENGLAND |