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Center for Computational Systems Medicine
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Fusion Gene Summary

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Fusion Gene ORF analysis

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Fusion Genomic Features

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Fusion Protein Features

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Fusion Gene Sequence

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Fusion Gene PPI analysis

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Related Drugs

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Related Diseases

Fusion gene:IQCK-INTS10 (FusionGDB2 ID:39976)

Fusion Gene Summary for IQCK-INTS10

check button Fusion gene summary
Fusion gene informationFusion gene name: IQCK-INTS10
Fusion gene ID: 39976
HgeneTgene
Gene symbol

IQCK

INTS10

Gene ID

124152

55174

Gene nameIQ motif containing Kintegrator complex subunit 10
Synonyms-C8orf35|INT10
Cytomap

16p12.3

8p21.3

Type of geneprotein-codingprotein-coding
DescriptionIQ domain-containing protein Kintegrator complex subunit 10
Modification date2020031320200313
UniProtAcc.

Q9NVR2

Ensembl transtripts involved in fusion geneENST00000320394, ENST00000564186, 
ENST00000541926, ENST00000433597, 
ENST00000562762, 
ENST00000397977, 
ENST00000521758, 
Fusion gene scores* DoF score10 X 12 X 6=7208 X 6 X 7=336
# samples 128
** MAII scorelog2(12/720*10)=-2.58496250072116
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
log2(8/336*10)=-2.0703893278914
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
Context

PubMed: IQCK [Title/Abstract] AND INTS10 [Title/Abstract] AND fusion [Title/Abstract]

Most frequent breakpointIQCK(19745149)-INTS10(19703215), # samples:1
Anticipated loss of major functional domain due to fusion event.
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
TgeneINTS10

GO:0016180

snRNA processing

16239144


check buttonFusion gene breakpoints across IQCK (5'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.

check buttonFusion gene breakpoints across INTS10 (3'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.

check button Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0)
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
SourceDiseaseSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
ChimerDB4GBMTCGA-02-2486-01AIQCKchr16

19745149

+INTS10chr8

19703215

+


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Fusion Gene ORF analysis for IQCK-INTS10

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
In-frameENST00000320394ENST00000397977IQCKchr16

19745149

+INTS10chr8

19703215

+
5CDS-intronENST00000320394ENST00000521758IQCKchr16

19745149

+INTS10chr8

19703215

+
In-frameENST00000564186ENST00000397977IQCKchr16

19745149

+INTS10chr8

19703215

+
5CDS-intronENST00000564186ENST00000521758IQCKchr16

19745149

+INTS10chr8

19703215

+
In-frameENST00000541926ENST00000397977IQCKchr16

19745149

+INTS10chr8

19703215

+
5CDS-intronENST00000541926ENST00000521758IQCKchr16

19745149

+INTS10chr8

19703215

+
In-frameENST00000433597ENST00000397977IQCKchr16

19745149

+INTS10chr8

19703215

+
5CDS-intronENST00000433597ENST00000521758IQCKchr16

19745149

+INTS10chr8

19703215

+
intron-3CDSENST00000562762ENST00000397977IQCKchr16

19745149

+INTS10chr8

19703215

+
intron-intronENST00000562762ENST00000521758IQCKchr16

19745149

+INTS10chr8

19703215

+

check buttonORFfinder result based on the fusion transcript sequence of in-frame fusion genes.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandSeq length
(transcript)
BP loci
(transcript)
Predicted start
(transcript)
Predicted stop
(transcript)
Seq length
(amino acids)
ENST00000320394IQCKchr1619745149+ENST00000397977INTS10chr819703215+159910751921325377
ENST00000564186IQCKchr1619745149+ENST00000397977INTS10chr819703215+92740327653208
ENST00000541926IQCKchr1619745149+ENST00000397977INTS10chr819703215+92239822648208
ENST00000433597IQCKchr1619745149+ENST00000397977INTS10chr819703215+827303110553147

check buttonDeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandNo-coding scoreCoding score
ENST00000320394ENST00000397977IQCKchr1619745149+INTS10chr819703215+0.0165123940.98348755
ENST00000564186ENST00000397977IQCKchr1619745149+INTS10chr819703215+0.0068286970.99317133
ENST00000541926ENST00000397977IQCKchr1619745149+INTS10chr819703215+0.0069059240.9930941
ENST00000433597ENST00000397977IQCKchr1619745149+INTS10chr819703215+0.0598510280.94014895

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Fusion Genomic Features for IQCK-INTS10


check buttonFusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints.
HgeneHchrHbpHstrandTgeneTchrTbpTstrand1-pp (fusion gene breakpoint)
IQCKchr1619745149+INTS10chr819703214+0.560790240.4392098
IQCKchr1619745149+INTS10chr819703214+0.560790240.4392098

check buttonDistribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page.

check buttonDistribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page.

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Fusion Protein Features for IQCK-INTS10


check button Go to

FGviewer for the breakpoints of chr16:19745149-chr8:19703215

.
- FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels.
FGviewer

check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
.INTS10

Q9NVR2

FUNCTION: Might normally function as a transcriptional repressor. EWS-fusion-proteins (EFPS) may play a role in the tumorigenic process. They may disturb gene expression by mimicking, or interfering with the normal function of CTD-POLII within the transcription initiation complex. They may also contribute to an aberrant activation of the fusion protein target genes.FUNCTION: Component of the Integrator (INT) complex, a complex involved in the small nuclear RNAs (snRNA) U1 and U2 transcription and in their 3'-box-dependent processing. The Integrator complex is associated with the C-terminal domain (CTD) of RNA polymerase II largest subunit (POLR2A) and is recruited to the U1 and U2 snRNAs genes (Probable). May be not involved in the recruitment of cytoplasmic dynein to the nuclear envelope by different components of the INT complex (PubMed:23904267). {ECO:0000269|PubMed:23904267, ECO:0000305|PubMed:16239144}.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page


* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
TgeneINTS10chr16:19745149chr8:19703215ENST000003979771417132_136627.3333333333334711.0Compositional biasNote=Poly-Leu


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Fusion Gene Sequence for IQCK-INTS10


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones.
>In-frame_ENST00000320394_ENST00000397977_TCGA-02-2486-01A_IQCK_chr16_19745149_+_INTS10_chr8_19703215_length(transcript)=1599nt_BP=1075nt
ATTAATCCCTGAGACAAAGGTACTGAAGGCAAGTGGCTGAAGAACAGGCTTGATTGGACAGATGACTTGGAGATGTTCACTGGACAGGGA
CAGCCTTGTGAAGATCTTTGTGAATACCCGACCTCGCAAGCTCCAGAGACTACAATAATTCACTTGCCCTAGGTTCCAAAGCCAGCAAGT
GGAAAACGGAGACTGGAATTCCGCCCACAGGACTCCAAAGCCTGTGCAGCAACACCCCACTCCCCCGGCAGGATCACCAGCAGGACGCGC
GGGAGCCAGGAAGTAAGATCCGTACCTCCAAGGCTCCCATGGGCCCAAGCCTCCGCATCAACAGACTGGGAGGGATTACGTGGGGTCCCA
GGGCCGGCTCTGAGGCGGGAAAACTTTCTGGAGGCGGCGGCCTCAGGCCGGAGCGGGCGCACACCGACTGGAGGGGTCGGATTCAGGGAT
GTGGGTGGACCGCATTTCCCCATCTTCCCCGCCGCGCACTTCCTCTGGTGCAATCTCCACACCCCGCGCCGGCCCGCCTGCAACGCGCCC
TGGCACTCACCGGTGGGCGAAATTTCCCCGCCTCCACGTGAGAGCCAGCTCCGCCGTGACCCGGAAGTCCACTTCGAGTCGCCGGCCCAC
CCTCTCGGGTTCCGGCTTCTTCCGGGTCGCGGCCTTCCGGCGAACGCGGTTACCGTGGAAACCGCGGCCATGGCGGCACCGCGGCAAATC
CCCAGCCACATAGTGCGCCTCAAGCCCAGCTGCTCTACAGACTCGTCGTTCACCCGGACGCCGGTGCCCACCGTGTCTCTCGCGTCCCGC
GAGCTGCCTGTCTCGTCGTGGCAGGTCACCGAGCCGTCAAGCAAGAATCTGTGGGAGCAGATCTGCAAGGAGTATGAAGCTGAGCAGCCT
CCCTTTCCAGAAGGATATAAAGTCAAACAGGAGCCTGTGATTACGGTTGCGCCAGTAGAGGAAATGCTTTTTCATGGCTTCAGTGCAGAG
CACTATTTTCCGGTTTCCCATTTCACCATGATCTCACGTACACCCTGTCCTCAAGATAAATCGGAAACAATCAACCCAAAAACATATATT
GATATGCTGGAGGAATTTGCCTACTTGAGAACTCAGGAAGGTGGGAAAATTCATCTGGAATTACTACCCAATCAAGGAATGCTGATCAAG
CACCACACTGTAACTCGAGGCATCACCAAAGGCGTGAAGGAGGACTTTCGCCTGGCCATGGAGCGCCAGGTCTCCCGCTGTGGAGAGAAT
CTGATGGTGGTTCTGCACAGGTTCTGCATTAATGAGAAGATCTTGCTCCTTCAGACTCTGACCTGAGTGGAGACCTTTCCACCAGACACA
GCTCGGGCCTGTGTAATTGTAGGAGAAGACACTCAGCAGTGATTGCCATGGCACAGAGCCGTGGTCATTGTTGCTGTTACAAAGAAGAAA
ACCATCTGAGTTCTAACTCCTTGGTTGCTTAAAAGTAGTTCCCAAGAGTCTGAGAAGCTATTTCTATTTTTAAGAGTCATTTTTTGTAAT

>In-frame_ENST00000320394_ENST00000397977_TCGA-02-2486-01A_IQCK_chr16_19745149_+_INTS10_chr8_19703215_length(amino acids)=377AA_start in transcript=192_stop in transcript=1325
MEFRPQDSKACAATPHSPGRITSRTRGSQEVRSVPPRLPWAQASASTDWEGLRGVPGPALRRENFLEAAASGRSGRTPTGGVGFRDVGGP
HFPIFPAAHFLWCNLHTPRRPACNAPWHSPVGEISPPPRESQLRRDPEVHFESPAHPLGFRLLPGRGLPANAVTVETAAMAAPRQIPSHI
VRLKPSCSTDSSFTRTPVPTVSLASRELPVSSWQVTEPSSKNLWEQICKEYEAEQPPFPEGYKVKQEPVITVAPVEEMLFHGFSAEHYFP
VSHFTMISRTPCPQDKSETINPKTYIDMLEEFAYLRTQEGGKIHLELLPNQGMLIKHHTVTRGITKGVKEDFRLAMERQVSRCGENLMVV

--------------------------------------------------------------
>In-frame_ENST00000564186_ENST00000397977_TCGA-02-2486-01A_IQCK_chr16_19745149_+_INTS10_chr8_19703215_length(transcript)=927nt_BP=403nt
AACGCGGTTACCGTGGAAACCGCGGCCATGGCGGCACCGCGGCAAATCCCCAGCCACATAGTGCGCCTCAAGCCCAGCTGCTCTACAGAC
TCGTCGTTCACCCGGACGCCGGTGCCCACCGTGTCTCTCGCGTCCCGCGAGCTGCCTGTCTCGTCGTGGCAGGTCACCGAGCCGTCAAGC
AAGAATCTGTGGGAGCAGATCTGCAAGGAGTATGAAGCTGAGCAGCCTCCCTTTCCAGAAGGATATAAAGTCAAACAGGAGCCTGTGATT
ACGGTTGCGCCAGTAGAGGAAATGCTTTTTCATGGCTTCAGTGCAGAGCACTATTTTCCGGTTTCCCATTTCACCATGATCTCACGTACA
CCCTGTCCTCAAGATAAATCGGAAACAATCAACCCAAAAACATATATTGATATGCTGGAGGAATTTGCCTACTTGAGAACTCAGGAAGGT
GGGAAAATTCATCTGGAATTACTACCCAATCAAGGAATGCTGATCAAGCACCACACTGTAACTCGAGGCATCACCAAAGGCGTGAAGGAG
GACTTTCGCCTGGCCATGGAGCGCCAGGTCTCCCGCTGTGGAGAGAATCTGATGGTGGTTCTGCACAGGTTCTGCATTAATGAGAAGATC
TTGCTCCTTCAGACTCTGACCTGAGTGGAGACCTTTCCACCAGACACAGCTCGGGCCTGTGTAATTGTAGGAGAAGACACTCAGCAGTGA
TTGCCATGGCACAGAGCCGTGGTCATTGTTGCTGTTACAAAGAAGAAAACCATCTGAGTTCTAACTCCTTGGTTGCTTAAAAGTAGTTCC
CAAGAGTCTGAGAAGCTATTTCTATTTTTAAGAGTCATTTTTTGTAATTTTTGTAAAACAAAAGTACCAATCTGTTTTGTAAATAAAAAT

>In-frame_ENST00000564186_ENST00000397977_TCGA-02-2486-01A_IQCK_chr16_19745149_+_INTS10_chr8_19703215_length(amino acids)=208AA_start in transcript=27_stop in transcript=653
MAAPRQIPSHIVRLKPSCSTDSSFTRTPVPTVSLASRELPVSSWQVTEPSSKNLWEQICKEYEAEQPPFPEGYKVKQEPVITVAPVEEML
FHGFSAEHYFPVSHFTMISRTPCPQDKSETINPKTYIDMLEEFAYLRTQEGGKIHLELLPNQGMLIKHHTVTRGITKGVKEDFRLAMERQ

--------------------------------------------------------------
>In-frame_ENST00000541926_ENST00000397977_TCGA-02-2486-01A_IQCK_chr16_19745149_+_INTS10_chr8_19703215_length(transcript)=922nt_BP=398nt
GGTTACCGTGGAAACCGCGGCCATGGCGGCACCGCGGCAAATCCCCAGCCACATAGTGCGCCTCAAGCCCAGCTGCTCTACAGACTCGTC
GTTCACCCGGACGCCGGTGCCCACCGTGTCTCTCGCGTCCCGCGAGCTGCCTGTCTCGTCGTGGCAGGTCACCGAGCCGTCAAGCAAGAA
TCTGTGGGAGCAGATCTGCAAGGAGTATGAAGCTGAGCAGCCTCCCTTTCCAGAAGGATATAAAGTCAAACAGGAGCCTGTGATTACGGT
TGCGCCAGTAGAGGAAATGCTTTTTCATGGCTTCAGTGCAGAGCACTATTTTCCGGTTTCCCATTTCACCATGATCTCACGTACACCCTG
TCCTCAAGATAAATCGGAAACAATCAACCCAAAAACATATATTGATATGCTGGAGGAATTTGCCTACTTGAGAACTCAGGAAGGTGGGAA
AATTCATCTGGAATTACTACCCAATCAAGGAATGCTGATCAAGCACCACACTGTAACTCGAGGCATCACCAAAGGCGTGAAGGAGGACTT
TCGCCTGGCCATGGAGCGCCAGGTCTCCCGCTGTGGAGAGAATCTGATGGTGGTTCTGCACAGGTTCTGCATTAATGAGAAGATCTTGCT
CCTTCAGACTCTGACCTGAGTGGAGACCTTTCCACCAGACACAGCTCGGGCCTGTGTAATTGTAGGAGAAGACACTCAGCAGTGATTGCC
ATGGCACAGAGCCGTGGTCATTGTTGCTGTTACAAAGAAGAAAACCATCTGAGTTCTAACTCCTTGGTTGCTTAAAAGTAGTTCCCAAGA
GTCTGAGAAGCTATTTCTATTTTTAAGAGTCATTTTTTGTAATTTTTGTAAAACAAAAGTACCAATCTGTTTTGTAAATAAAAATCATCC

>In-frame_ENST00000541926_ENST00000397977_TCGA-02-2486-01A_IQCK_chr16_19745149_+_INTS10_chr8_19703215_length(amino acids)=208AA_start in transcript=22_stop in transcript=648
MAAPRQIPSHIVRLKPSCSTDSSFTRTPVPTVSLASRELPVSSWQVTEPSSKNLWEQICKEYEAEQPPFPEGYKVKQEPVITVAPVEEML
FHGFSAEHYFPVSHFTMISRTPCPQDKSETINPKTYIDMLEEFAYLRTQEGGKIHLELLPNQGMLIKHHTVTRGITKGVKEDFRLAMERQ

--------------------------------------------------------------
>In-frame_ENST00000433597_ENST00000397977_TCGA-02-2486-01A_IQCK_chr16_19745149_+_INTS10_chr8_19703215_length(transcript)=827nt_BP=303nt
ACCGCGGCAAATCCCCAGCCACATAGTGCGCCTCAAGCCCAGCTGCTCTACAGACTCGTCGTTCACCCGGACGCCGGTGCCCACCGTGTC
TCTCGCGTCCCGCGAGCTGCCTGTCTCGTCGTGGCAGGTCACCGAGCCGTCAAGCAAGAATCTGTGGGAGCAGATCTGCAAGGGTTGCGC
CAGTAGAGGAAATGCTTTTTCATGGCTTCAGTGCAGAGCACTATTTTCCGGTTTCCCATTTCACCATGATCTCACGTACACCCTGTCCTC
AAGATAAATCGGAAACAATCAACCCAAAAACATATATTGATATGCTGGAGGAATTTGCCTACTTGAGAACTCAGGAAGGTGGGAAAATTC
ATCTGGAATTACTACCCAATCAAGGAATGCTGATCAAGCACCACACTGTAACTCGAGGCATCACCAAAGGCGTGAAGGAGGACTTTCGCC
TGGCCATGGAGCGCCAGGTCTCCCGCTGTGGAGAGAATCTGATGGTGGTTCTGCACAGGTTCTGCATTAATGAGAAGATCTTGCTCCTTC
AGACTCTGACCTGAGTGGAGACCTTTCCACCAGACACAGCTCGGGCCTGTGTAATTGTAGGAGAAGACACTCAGCAGTGATTGCCATGGC
ACAGAGCCGTGGTCATTGTTGCTGTTACAAAGAAGAAAACCATCTGAGTTCTAACTCCTTGGTTGCTTAAAAGTAGTTCCCAAGAGTCTG
AGAAGCTATTTCTATTTTTAAGAGTCATTTTTTGTAATTTTTGTAAAACAAAAGTACCAATCTGTTTTGTAAATAAAAATCATCCTAAAA

>In-frame_ENST00000433597_ENST00000397977_TCGA-02-2486-01A_IQCK_chr16_19745149_+_INTS10_chr8_19703215_length(amino acids)=147AA_start in transcript=110_stop in transcript=553
MSRRGRSPSRQARICGSRSARVAPVEEMLFHGFSAEHYFPVSHFTMISRTPCPQDKSETINPKTYIDMLEEFAYLRTQEGGKIHLELLPN

--------------------------------------------------------------

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Fusion Gene PPI Analysis for IQCK-INTS10


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page.


check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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Related Drugs for IQCK-INTS10


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.8 2021-05-08)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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Related Diseases for IQCK-INTS10


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource
HgeneIQCKC0002395Alzheimer's Disease1CTD_human
HgeneIQCKC0011265Presenile dementia1CTD_human
HgeneIQCKC0276496Familial Alzheimer Disease (FAD)1CTD_human
HgeneIQCKC0494463Alzheimer Disease, Late Onset1CTD_human
HgeneIQCKC0546126Acute Confusional Senile Dementia1CTD_human
HgeneIQCKC0750900Alzheimer's Disease, Focal Onset1CTD_human
HgeneIQCKC0750901Alzheimer Disease, Early Onset1CTD_human