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Fusion Gene Summary | |
Fusion Gene ORF analysis | |
Fusion Genomic Features | |
Fusion Protein Features | |
Fusion Gene Sequence | |
Fusion Gene PPI analysis | |
Related Drugs | |
Related Diseases |
Fusion gene:KIF21A-TMTC2 (FusionGDB2 ID:42451) |
Fusion Gene Summary for KIF21A-TMTC2 |
Fusion gene summary |
Fusion gene information | Fusion gene name: KIF21A-TMTC2 | Fusion gene ID: 42451 | Hgene | Tgene | Gene symbol | KIF21A | TMTC2 | Gene ID | 55605 | 160335 |
Gene name | kinesin family member 21A | transmembrane O-mannosyltransferase targeting cadherins 2 | |
Synonyms | CFEOM1|FEOM1|FEOM3A | IBDBP1 | |
Cytomap | 12q12 | 12q21.31 | |
Type of gene | protein-coding | protein-coding | |
Description | kinesin-like protein KIF21Akinesin-like protein KIF2renal carcinoma antigen NY-REN-62 | protein O-mannosyl-transferase TMTC2transmembrane and TPR repeat-containing protein 2transmembrane and tetratricopeptide repeat containing 2 | |
Modification date | 20200313 | 20200329 | |
UniProtAcc | Q7Z4S6 | . | |
Ensembl transtripts involved in fusion gene | ENST00000361961, ENST00000395670, ENST00000544797, ENST00000361418, ENST00000541463, ENST00000547745, | ENST00000321196, ENST00000548305, ENST00000549919, | |
Fusion gene scores | * DoF score | 15 X 11 X 8=1320 | 20 X 21 X 5=2100 |
# samples | 17 | 24 | |
** MAII score | log2(17/1320*10)=-2.95693127810811 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(24/2100*10)=-3.12928301694497 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
Context | PubMed: KIF21A [Title/Abstract] AND TMTC2 [Title/Abstract] AND fusion [Title/Abstract] | ||
Most frequent breakpoint | KIF21A(39836729)-TMTC2(83424577), # samples:3 | ||
Anticipated loss of major functional domain due to fusion event. |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
Partner | Gene | GO ID | GO term | PubMed ID |
Fusion gene breakpoints across KIF21A (5'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
Fusion gene breakpoints across TMTC2 (3'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Source | Disease | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
ChimerDB4 | LUAD | TCGA-78-7150-01A | KIF21A | chr12 | 39836729 | - | TMTC2 | chr12 | 83424577 | + |
ChimerDB4 | LUAD | TCGA-78-7150-01A | KIF21A | chr12 | 39836729 | - | TMTC2 | chr12 | 83424577 | + |
ChimerDB4 | LUAD | TCGA-78-7150-01A | KIF21A | chr12 | 39836729 | - | TMTC2 | chr12 | 83424577 | + |
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Fusion Gene ORF analysis for KIF21A-TMTC2 |
Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
In-frame | ENST00000361961 | ENST00000321196 | KIF21A | chr12 | 39836729 | - | TMTC2 | chr12 | 83424577 | + |
5CDS-intron | ENST00000361961 | ENST00000548305 | KIF21A | chr12 | 39836729 | - | TMTC2 | chr12 | 83424577 | + |
5CDS-intron | ENST00000361961 | ENST00000549919 | KIF21A | chr12 | 39836729 | - | TMTC2 | chr12 | 83424577 | + |
In-frame | ENST00000395670 | ENST00000321196 | KIF21A | chr12 | 39836729 | - | TMTC2 | chr12 | 83424577 | + |
5CDS-intron | ENST00000395670 | ENST00000548305 | KIF21A | chr12 | 39836729 | - | TMTC2 | chr12 | 83424577 | + |
5CDS-intron | ENST00000395670 | ENST00000549919 | KIF21A | chr12 | 39836729 | - | TMTC2 | chr12 | 83424577 | + |
In-frame | ENST00000544797 | ENST00000321196 | KIF21A | chr12 | 39836729 | - | TMTC2 | chr12 | 83424577 | + |
5CDS-intron | ENST00000544797 | ENST00000548305 | KIF21A | chr12 | 39836729 | - | TMTC2 | chr12 | 83424577 | + |
5CDS-intron | ENST00000544797 | ENST00000549919 | KIF21A | chr12 | 39836729 | - | TMTC2 | chr12 | 83424577 | + |
In-frame | ENST00000361418 | ENST00000321196 | KIF21A | chr12 | 39836729 | - | TMTC2 | chr12 | 83424577 | + |
5CDS-intron | ENST00000361418 | ENST00000548305 | KIF21A | chr12 | 39836729 | - | TMTC2 | chr12 | 83424577 | + |
5CDS-intron | ENST00000361418 | ENST00000549919 | KIF21A | chr12 | 39836729 | - | TMTC2 | chr12 | 83424577 | + |
In-frame | ENST00000541463 | ENST00000321196 | KIF21A | chr12 | 39836729 | - | TMTC2 | chr12 | 83424577 | + |
5CDS-intron | ENST00000541463 | ENST00000548305 | KIF21A | chr12 | 39836729 | - | TMTC2 | chr12 | 83424577 | + |
5CDS-intron | ENST00000541463 | ENST00000549919 | KIF21A | chr12 | 39836729 | - | TMTC2 | chr12 | 83424577 | + |
intron-3CDS | ENST00000547745 | ENST00000321196 | KIF21A | chr12 | 39836729 | - | TMTC2 | chr12 | 83424577 | + |
intron-intron | ENST00000547745 | ENST00000548305 | KIF21A | chr12 | 39836729 | - | TMTC2 | chr12 | 83424577 | + |
intron-intron | ENST00000547745 | ENST00000549919 | KIF21A | chr12 | 39836729 | - | TMTC2 | chr12 | 83424577 | + |
ORFfinder result based on the fusion transcript sequence of in-frame fusion genes. |
Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | Seq length (transcript) | BP loci (transcript) | Predicted start (transcript) | Predicted stop (transcript) | Seq length (amino acids) |
ENST00000361961 | KIF21A | chr12 | 39836729 | - | ENST00000321196 | TMTC2 | chr12 | 83424577 | + | 3368 | 464 | 550 | 86 | 154 |
ENST00000395670 | KIF21A | chr12 | 39836729 | - | ENST00000321196 | TMTC2 | chr12 | 83424577 | + | 3368 | 464 | 550 | 86 | 154 |
ENST00000544797 | KIF21A | chr12 | 39836729 | - | ENST00000321196 | TMTC2 | chr12 | 83424577 | + | 3037 | 133 | 163 | 573 | 136 |
ENST00000361418 | KIF21A | chr12 | 39836729 | - | ENST00000321196 | TMTC2 | chr12 | 83424577 | + | 2964 | 60 | 90 | 500 | 136 |
ENST00000541463 | KIF21A | chr12 | 39836729 | - | ENST00000321196 | TMTC2 | chr12 | 83424577 | + | 2948 | 44 | 74 | 484 | 136 |
DeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated. |
Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | No-coding score | Coding score |
ENST00000361961 | ENST00000321196 | KIF21A | chr12 | 39836729 | - | TMTC2 | chr12 | 83424577 | + | 0.00580688 | 0.99419314 |
ENST00000395670 | ENST00000321196 | KIF21A | chr12 | 39836729 | - | TMTC2 | chr12 | 83424577 | + | 0.00580688 | 0.99419314 |
ENST00000544797 | ENST00000321196 | KIF21A | chr12 | 39836729 | - | TMTC2 | chr12 | 83424577 | + | 0.004674859 | 0.9953251 |
ENST00000361418 | ENST00000321196 | KIF21A | chr12 | 39836729 | - | TMTC2 | chr12 | 83424577 | + | 0.006350628 | 0.9936494 |
ENST00000541463 | ENST00000321196 | KIF21A | chr12 | 39836729 | - | TMTC2 | chr12 | 83424577 | + | 0.003022409 | 0.99697757 |
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Fusion Genomic Features for KIF21A-TMTC2 |
FusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints. |
Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | 1-p | p (fusion gene breakpoint) |
KIF21A | chr12 | 39836728 | - | TMTC2 | chr12 | 83424576 | + | 3.55E-06 | 0.9999964 |
KIF21A | chr12 | 39836728 | - | TMTC2 | chr12 | 83424576 | + | 3.55E-06 | 0.9999964 |
Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page. |
Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page. |
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Fusion Protein Features for KIF21A-TMTC2 |
Go to FGviewer for the breakpoints of chr12:39836729-chr12:83424577 - FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels. |
Main function of each fusion partner protein. (from UniProt) |
Hgene | Tgene |
KIF21A | . |
FUNCTION: Microtubule-binding motor protein probably involved in neuronal axonal transport. In vitro, has a plus-end directed motor activity (By similarity). {ECO:0000250}. | FUNCTION: Might normally function as a transcriptional repressor. EWS-fusion-proteins (EFPS) may play a role in the tumorigenic process. They may disturb gene expression by mimicking, or interfering with the normal function of CTD-POLII within the transcription initiation complex. They may also contribute to an aberrant activation of the fusion protein target genes. |
Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Tgene | TMTC2 | chr12:39836729 | chr12:83424577 | ENST00000321196 | 7 | 12 | 712_744 | 690.0 | 837.0 | Repeat | Note=TPR 8 | |
Tgene | TMTC2 | chr12:39836729 | chr12:83424577 | ENST00000321196 | 7 | 12 | 746_778 | 690.0 | 837.0 | Repeat | Note=TPR 9 | |
Tgene | TMTC2 | chr12:39836729 | chr12:83424577 | ENST00000321196 | 7 | 12 | 779_812 | 690.0 | 837.0 | Repeat | Note=TPR 10 |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | KIF21A | chr12:39836729 | chr12:83424577 | ENST00000361418 | - | 1 | 38 | 1053_1083 | 14.666666666666666 | 1675.0 | Coiled coil | Ontology_term=ECO:0000255 |
Hgene | KIF21A | chr12:39836729 | chr12:83424577 | ENST00000361418 | - | 1 | 38 | 365_575 | 14.666666666666666 | 1675.0 | Coiled coil | Ontology_term=ECO:0000255 |
Hgene | KIF21A | chr12:39836729 | chr12:83424577 | ENST00000361418 | - | 1 | 38 | 931_1019 | 14.666666666666666 | 1675.0 | Coiled coil | Ontology_term=ECO:0000255 |
Hgene | KIF21A | chr12:39836729 | chr12:83424577 | ENST00000361961 | - | 1 | 37 | 1053_1083 | 14.666666666666666 | 1662.0 | Coiled coil | Ontology_term=ECO:0000255 |
Hgene | KIF21A | chr12:39836729 | chr12:83424577 | ENST00000361961 | - | 1 | 37 | 365_575 | 14.666666666666666 | 1662.0 | Coiled coil | Ontology_term=ECO:0000255 |
Hgene | KIF21A | chr12:39836729 | chr12:83424577 | ENST00000361961 | - | 1 | 37 | 931_1019 | 14.666666666666666 | 1662.0 | Coiled coil | Ontology_term=ECO:0000255 |
Hgene | KIF21A | chr12:39836729 | chr12:83424577 | ENST00000541463 | - | 1 | 34 | 1053_1083 | 14.666666666666666 | 1622.0 | Coiled coil | Ontology_term=ECO:0000255 |
Hgene | KIF21A | chr12:39836729 | chr12:83424577 | ENST00000541463 | - | 1 | 34 | 365_575 | 14.666666666666666 | 1622.0 | Coiled coil | Ontology_term=ECO:0000255 |
Hgene | KIF21A | chr12:39836729 | chr12:83424577 | ENST00000541463 | - | 1 | 34 | 931_1019 | 14.666666666666666 | 1622.0 | Coiled coil | Ontology_term=ECO:0000255 |
Hgene | KIF21A | chr12:39836729 | chr12:83424577 | ENST00000544797 | - | 1 | 34 | 1053_1083 | 14.666666666666666 | 1638.0 | Coiled coil | Ontology_term=ECO:0000255 |
Hgene | KIF21A | chr12:39836729 | chr12:83424577 | ENST00000544797 | - | 1 | 34 | 365_575 | 14.666666666666666 | 1638.0 | Coiled coil | Ontology_term=ECO:0000255 |
Hgene | KIF21A | chr12:39836729 | chr12:83424577 | ENST00000544797 | - | 1 | 34 | 931_1019 | 14.666666666666666 | 1638.0 | Coiled coil | Ontology_term=ECO:0000255 |
Hgene | KIF21A | chr12:39836729 | chr12:83424577 | ENST00000361418 | - | 1 | 38 | 9_371 | 14.666666666666666 | 1675.0 | Domain | Kinesin motor |
Hgene | KIF21A | chr12:39836729 | chr12:83424577 | ENST00000361961 | - | 1 | 37 | 9_371 | 14.666666666666666 | 1662.0 | Domain | Kinesin motor |
Hgene | KIF21A | chr12:39836729 | chr12:83424577 | ENST00000541463 | - | 1 | 34 | 9_371 | 14.666666666666666 | 1622.0 | Domain | Kinesin motor |
Hgene | KIF21A | chr12:39836729 | chr12:83424577 | ENST00000544797 | - | 1 | 34 | 9_371 | 14.666666666666666 | 1638.0 | Domain | Kinesin motor |
Hgene | KIF21A | chr12:39836729 | chr12:83424577 | ENST00000361418 | - | 1 | 38 | 88_95 | 14.666666666666666 | 1675.0 | Nucleotide binding | ATP |
Hgene | KIF21A | chr12:39836729 | chr12:83424577 | ENST00000361961 | - | 1 | 37 | 88_95 | 14.666666666666666 | 1662.0 | Nucleotide binding | ATP |
Hgene | KIF21A | chr12:39836729 | chr12:83424577 | ENST00000541463 | - | 1 | 34 | 88_95 | 14.666666666666666 | 1622.0 | Nucleotide binding | ATP |
Hgene | KIF21A | chr12:39836729 | chr12:83424577 | ENST00000544797 | - | 1 | 34 | 88_95 | 14.666666666666666 | 1638.0 | Nucleotide binding | ATP |
Hgene | KIF21A | chr12:39836729 | chr12:83424577 | ENST00000361418 | - | 1 | 38 | 1345_1382 | 14.666666666666666 | 1675.0 | Repeat | Note=WD 1 |
Hgene | KIF21A | chr12:39836729 | chr12:83424577 | ENST00000361418 | - | 1 | 38 | 1385_1423 | 14.666666666666666 | 1675.0 | Repeat | Note=WD 2 |
Hgene | KIF21A | chr12:39836729 | chr12:83424577 | ENST00000361418 | - | 1 | 38 | 1449_1487 | 14.666666666666666 | 1675.0 | Repeat | Note=WD 3 |
Hgene | KIF21A | chr12:39836729 | chr12:83424577 | ENST00000361418 | - | 1 | 38 | 1490_1532 | 14.666666666666666 | 1675.0 | Repeat | Note=WD 4 |
Hgene | KIF21A | chr12:39836729 | chr12:83424577 | ENST00000361418 | - | 1 | 38 | 1541_1578 | 14.666666666666666 | 1675.0 | Repeat | Note=WD 5 |
Hgene | KIF21A | chr12:39836729 | chr12:83424577 | ENST00000361418 | - | 1 | 38 | 1582_1621 | 14.666666666666666 | 1675.0 | Repeat | Note=WD 6 |
Hgene | KIF21A | chr12:39836729 | chr12:83424577 | ENST00000361418 | - | 1 | 38 | 1624_1661 | 14.666666666666666 | 1675.0 | Repeat | Note=WD 7 |
Hgene | KIF21A | chr12:39836729 | chr12:83424577 | ENST00000361961 | - | 1 | 37 | 1345_1382 | 14.666666666666666 | 1662.0 | Repeat | Note=WD 1 |
Hgene | KIF21A | chr12:39836729 | chr12:83424577 | ENST00000361961 | - | 1 | 37 | 1385_1423 | 14.666666666666666 | 1662.0 | Repeat | Note=WD 2 |
Hgene | KIF21A | chr12:39836729 | chr12:83424577 | ENST00000361961 | - | 1 | 37 | 1449_1487 | 14.666666666666666 | 1662.0 | Repeat | Note=WD 3 |
Hgene | KIF21A | chr12:39836729 | chr12:83424577 | ENST00000361961 | - | 1 | 37 | 1490_1532 | 14.666666666666666 | 1662.0 | Repeat | Note=WD 4 |
Hgene | KIF21A | chr12:39836729 | chr12:83424577 | ENST00000361961 | - | 1 | 37 | 1541_1578 | 14.666666666666666 | 1662.0 | Repeat | Note=WD 5 |
Hgene | KIF21A | chr12:39836729 | chr12:83424577 | ENST00000361961 | - | 1 | 37 | 1582_1621 | 14.666666666666666 | 1662.0 | Repeat | Note=WD 6 |
Hgene | KIF21A | chr12:39836729 | chr12:83424577 | ENST00000361961 | - | 1 | 37 | 1624_1661 | 14.666666666666666 | 1662.0 | Repeat | Note=WD 7 |
Hgene | KIF21A | chr12:39836729 | chr12:83424577 | ENST00000541463 | - | 1 | 34 | 1345_1382 | 14.666666666666666 | 1622.0 | Repeat | Note=WD 1 |
Hgene | KIF21A | chr12:39836729 | chr12:83424577 | ENST00000541463 | - | 1 | 34 | 1385_1423 | 14.666666666666666 | 1622.0 | Repeat | Note=WD 2 |
Hgene | KIF21A | chr12:39836729 | chr12:83424577 | ENST00000541463 | - | 1 | 34 | 1449_1487 | 14.666666666666666 | 1622.0 | Repeat | Note=WD 3 |
Hgene | KIF21A | chr12:39836729 | chr12:83424577 | ENST00000541463 | - | 1 | 34 | 1490_1532 | 14.666666666666666 | 1622.0 | Repeat | Note=WD 4 |
Hgene | KIF21A | chr12:39836729 | chr12:83424577 | ENST00000541463 | - | 1 | 34 | 1541_1578 | 14.666666666666666 | 1622.0 | Repeat | Note=WD 5 |
Hgene | KIF21A | chr12:39836729 | chr12:83424577 | ENST00000541463 | - | 1 | 34 | 1582_1621 | 14.666666666666666 | 1622.0 | Repeat | Note=WD 6 |
Hgene | KIF21A | chr12:39836729 | chr12:83424577 | ENST00000541463 | - | 1 | 34 | 1624_1661 | 14.666666666666666 | 1622.0 | Repeat | Note=WD 7 |
Hgene | KIF21A | chr12:39836729 | chr12:83424577 | ENST00000544797 | - | 1 | 34 | 1345_1382 | 14.666666666666666 | 1638.0 | Repeat | Note=WD 1 |
Hgene | KIF21A | chr12:39836729 | chr12:83424577 | ENST00000544797 | - | 1 | 34 | 1385_1423 | 14.666666666666666 | 1638.0 | Repeat | Note=WD 2 |
Hgene | KIF21A | chr12:39836729 | chr12:83424577 | ENST00000544797 | - | 1 | 34 | 1449_1487 | 14.666666666666666 | 1638.0 | Repeat | Note=WD 3 |
Hgene | KIF21A | chr12:39836729 | chr12:83424577 | ENST00000544797 | - | 1 | 34 | 1490_1532 | 14.666666666666666 | 1638.0 | Repeat | Note=WD 4 |
Hgene | KIF21A | chr12:39836729 | chr12:83424577 | ENST00000544797 | - | 1 | 34 | 1541_1578 | 14.666666666666666 | 1638.0 | Repeat | Note=WD 5 |
Hgene | KIF21A | chr12:39836729 | chr12:83424577 | ENST00000544797 | - | 1 | 34 | 1582_1621 | 14.666666666666666 | 1638.0 | Repeat | Note=WD 6 |
Hgene | KIF21A | chr12:39836729 | chr12:83424577 | ENST00000544797 | - | 1 | 34 | 1624_1661 | 14.666666666666666 | 1638.0 | Repeat | Note=WD 7 |
Tgene | TMTC2 | chr12:39836729 | chr12:83424577 | ENST00000321196 | 7 | 12 | 462_492 | 690.0 | 837.0 | Repeat | Note=TPR 1 | |
Tgene | TMTC2 | chr12:39836729 | chr12:83424577 | ENST00000321196 | 7 | 12 | 493_526 | 690.0 | 837.0 | Repeat | Note=TPR 2 | |
Tgene | TMTC2 | chr12:39836729 | chr12:83424577 | ENST00000321196 | 7 | 12 | 527_560 | 690.0 | 837.0 | Repeat | Note=TPR 3 | |
Tgene | TMTC2 | chr12:39836729 | chr12:83424577 | ENST00000321196 | 7 | 12 | 562_594 | 690.0 | 837.0 | Repeat | Note=TPR 4 | |
Tgene | TMTC2 | chr12:39836729 | chr12:83424577 | ENST00000321196 | 7 | 12 | 606_639 | 690.0 | 837.0 | Repeat | Note=TPR 5 | |
Tgene | TMTC2 | chr12:39836729 | chr12:83424577 | ENST00000321196 | 7 | 12 | 643_676 | 690.0 | 837.0 | Repeat | Note=TPR 6 | |
Tgene | TMTC2 | chr12:39836729 | chr12:83424577 | ENST00000321196 | 7 | 12 | 677_710 | 690.0 | 837.0 | Repeat | Note=TPR 7 | |
Tgene | TMTC2 | chr12:39836729 | chr12:83424577 | ENST00000321196 | 7 | 12 | 108_128 | 690.0 | 837.0 | Transmembrane | Helical | |
Tgene | TMTC2 | chr12:39836729 | chr12:83424577 | ENST00000321196 | 7 | 12 | 133_153 | 690.0 | 837.0 | Transmembrane | Helical | |
Tgene | TMTC2 | chr12:39836729 | chr12:83424577 | ENST00000321196 | 7 | 12 | 163_183 | 690.0 | 837.0 | Transmembrane | Helical | |
Tgene | TMTC2 | chr12:39836729 | chr12:83424577 | ENST00000321196 | 7 | 12 | 184_204 | 690.0 | 837.0 | Transmembrane | Helical | |
Tgene | TMTC2 | chr12:39836729 | chr12:83424577 | ENST00000321196 | 7 | 12 | 222_241 | 690.0 | 837.0 | Transmembrane | Helical | |
Tgene | TMTC2 | chr12:39836729 | chr12:83424577 | ENST00000321196 | 7 | 12 | 313_333 | 690.0 | 837.0 | Transmembrane | Helical | |
Tgene | TMTC2 | chr12:39836729 | chr12:83424577 | ENST00000321196 | 7 | 12 | 400_420 | 690.0 | 837.0 | Transmembrane | Helical | |
Tgene | TMTC2 | chr12:39836729 | chr12:83424577 | ENST00000321196 | 7 | 12 | 423_443 | 690.0 | 837.0 | Transmembrane | Helical | |
Tgene | TMTC2 | chr12:39836729 | chr12:83424577 | ENST00000321196 | 7 | 12 | 450_470 | 690.0 | 837.0 | Transmembrane | Helical | |
Tgene | TMTC2 | chr12:39836729 | chr12:83424577 | ENST00000321196 | 7 | 12 | 85_105 | 690.0 | 837.0 | Transmembrane | Helical |
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Fusion Gene Sequence for KIF21A-TMTC2 |
For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones. |
>In-frame_ENST00000361961_ENST00000321196_TCGA-78-7150-01A_KIF21A_chr12_39836729_-_TMTC2_chr12_83424577_length(transcript)=3368nt_BP=464nt GAGGAGCCCGGAGCGCCCTGGCGGGCGTGGAGTCCCCAGCCTGGCCGCTGGGAGGCCGCGTCCCCACCGGAGGGGGCAGGGCGCACTCAC CCGGCCGCCCTGAGGCCGCTGGCGGCCTGTTGGCTTCTCCACAGGCGCGCTCGCCGTTCAAGCGCGCTTTGTCCCCGCCCCAGATCCTGG GGGGTGAGCGGTGGAGAAGGGGCGGGCGCCCGCGAGCCGTGAATCACCTCCTCCTCTTGCTGCCTCAGCGCCGCCGCCACCTTTCCATTC AGTCGCCCAACATGGCTGGAGCGCGGCGGAGGTGAGCCGGCCGCCCGCCCGCAGACGCCCCAGCCTACTGCGCCCGAGTCCCGCGGCCCC AGTGGCGCCTCAGCTCTGCGGTGCCGAGGCCCAACGGCTCGATCGCTGCCCGCCGCCAGCATGTTGGGCGCCCCGGACGAGAGCTCCGTG CGGGTGGCTGTCAGGGTCGTAAGAGTGAGGCTGAAAAGCTCTTCTTGAAGGCTATTGAGCTGGATCCCACCAAAGGAAACTGTTACATGC ATTATGGTCAGTTTCTTCTGGAAGAAGCTCGTCTCATAGAAGCAGCTGAGATGGCAAAAAAAGCAGCTGAACTAGACAGCACAGAGTTTG ATGTTGTCTTCAATGCTGCCCACATGCTCAGACAGGCTAGCCTCAATGAAGCAGCTGAGAAGTATTATGATCTGGCAGCCAGGCTGAGGC CTAATTATCCGGCTGCTTTGATGAACCTGGGAGCCATTCTGCACCTCAATGGCAGACTCCAGAAGGCCGAGGCCAACTACCTGCGGGCCC TGCAGCTCAAGCCAGACGATGTCATCACACAGTCCAATCTCCGCAAACTGTGGAACATCATGGAAAAACAAGGCTTAAAGACTTCTAAGA CCTGACACAGGAGGCAGAAGCCCATCCTCCTCCATTTTTAAAAGCTGGCTTCCTTAGCAGACAGAACTTCCCAGCAGTGCTATGACAAGA GCTGGTGTTAGACTTCAAGACCAGGGCAGAGGTCATTGAGGTCACTACCGCTTCTGGAAGAATCCACTTTGCTGTAGGCACAGCTGTTAA CACCAAAAAGGGGAAAGCCGGAAACCTCCTGGAGGATGTCATTGTTACCCATAGACTGTAAACCAGAGCACTTAAAACAGAACCTTTTGG CATTCTTAAAAAGGGAGGGGTGGGTGTGTAAGTCACAGATTTTGTTCATTTTCTGAAAGCTAATTTCAAAATTATGTTGTTCCTTAAACA CTGTGAGAGGAAGTCAGAGTGTCCATTCAGGCATGGCAAACAATTAGGGTTAAGTGTTACGAGGGAGTGATAAACACGTAGTGTGAGTCC CAGTGAGCCGCCGGTTGTCCTAACGCTGCTGTCTTCCCTGTTTGGGACAGCCTGCTTATCAATTTCTGAAGCTTAGAACACTTTTTTTAA TACTGTGTCAAGATCTGTCAGAATCTGCTATGTTTCTTGACCAGTGCACATAATGTTTTATGATTTGGATGTCAGAGGCTTCATTCTTTT GGACATCATTTGCTTTTTATGTTCTGAAAAGGATATGGAGAGTAGAGCTAACCATACTTCACACTCGAGTTGTATGAGGGACTGGGGAGG CCTTATATGTGTCAGGCAGGCATTTTTTAAATTTTAATATCGTCAATATTTTCCCCCAAACTGCCCAGTAGAATTCATTGTATTAATTCT TTTGAAATTACCTTTGAAAATAGCTATTCCTGGAGAATGTGCAAGCTTACATAAGGATAAAGGACAGGGGAGGAGTTTGTAAGCCTTGCA GTTCCAATAACTAACCAACAGGTTATTAGACAAAAGGGAAGGTGTTTTGTGCTTCTCAGATGTTGCTGGTTTAGGAGTGTGTGATGATGC TTGCCAGTGATTTTGTGTTTTGGAAAGGGTAGGTATCGAATGTTAATCACTTTCTAATGGGTACCTAAACAGCAATGCTGATAAATGTTC AAGGAATTATTTTCATCTTAGTTTGTTCTTCTCAAAAGGCATCAAAAACAACTTATTTGAAGCTGCAATAGAGTGTAGCATTAGCCTGCA TGTTTCTAGGTCTTCTGCCAAGTGCTTTTCTCAGTTGAAAACTATTTTTCACTAGCAAAATTGGTATTTTATTTCATTACCTGTTAGTAA CTACTTCAATGATCATTTCACAAGAAAAAGACTATAAATTAAGTAGAGAACAACATTTTTATTGAACATTTTTGGCTTGCAATCAAACTT TGCCACTAAAAATTAACTTCATAAAACACTAGTCCGTTATCAACTTCTTCACAGAGAAAGTAGCTATACTATACCCTACATATTTATTTA TTTATTATTCTACTATAGCAGAATAACAAAACTTGATGCATTAAGCCAGTTCTTTGCAACTGAAAATTACCTGTTTCTCCTTCCCTTTCA CACTCCATGTATATATGATCAGCCTCTCCATTAAAAAGAAGCTGGACATGCAAATACATCATATTATGTTTTCTCCATATTTTATGTTTT TCTATGTATCTGAATACAGTGGGATAAATAATTGAAAGTAGTGTTCCTATGGCATTAGTGTTTTTGTGAGAAGGGTAAATGTAGTGAGAA AGGTTTTTTCATGGCATTAATAAGAAAGCCCTTCTGTAATATATATATTATTTTGTAAACATTTCACTGAAGGGCCAAAAGTTAAATTAT AACTAAATCACTGTGTTTTCAGAATGATATTTAACAACAAACCCGTGGTCAAACCAAAATAGTGGGTTGAAGTGTATTATTCATCTTTTA GTGCATTGGCAATTGCAAAAAAAAAAAAGGAATTTAATATAAGGCTATAGAGATTAATTCAGTGTCTAACATTTGTATTTATTTAAATAG TTATTGACCTATGATGACTTTCTAGTCTTAACATTTTATCTTTTTATTGTTGTTGTTCTTCCTTTCAAAGATGTGGTTCTTAATAGGTTC ACTGAATGCACAGTTGAGGCACTTCTTGTGACACCAGTTCCCAAGTAGCGTTAATAATTGGGCCTGTGTCATAAAATGCACGGATCATTA ATAACTAAATGTCCCTGACACTTTTCACTACAGGGCTGGACTTAGTAACTGACCAACTTCGGGGGGAGGGTTGGGGCAAGGGGGGGTGGG CGTTAGAACATGATCAAAAAATGTCTCCGCTCAGGGATTTATGGTGGATTATTGCAGACAGTGCTAAAAATATAGAGCACAAGACAAGTT TACTAAATTAAAATTTTATTTTTTGAGAAACTGTTATTTGTATAAATTATCAAGATTTGTAGGCTTTCCTTTTGTAGAAATAATTGTTTT >In-frame_ENST00000361961_ENST00000321196_TCGA-78-7150-01A_KIF21A_chr12_39836729_-_TMTC2_chr12_83424577_length(amino acids)=154AA_start in transcript=550_stop in transcript=86 MTIMHVTVSFGGIQLNSLQEELFSLTLTTLTATRTELSSGAPNMLAAGSDRAVGPRHRRAEAPLGPRDSGAVGWGVCGRAAGSPPPRSSH -------------------------------------------------------------- >In-frame_ENST00000395670_ENST00000321196_TCGA-78-7150-01A_KIF21A_chr12_39836729_-_TMTC2_chr12_83424577_length(transcript)=3368nt_BP=464nt GAGGAGCCCGGAGCGCCCTGGCGGGCGTGGAGTCCCCAGCCTGGCCGCTGGGAGGCCGCGTCCCCACCGGAGGGGGCAGGGCGCACTCAC CCGGCCGCCCTGAGGCCGCTGGCGGCCTGTTGGCTTCTCCACAGGCGCGCTCGCCGTTCAAGCGCGCTTTGTCCCCGCCCCAGATCCTGG GGGGTGAGCGGTGGAGAAGGGGCGGGCGCCCGCGAGCCGTGAATCACCTCCTCCTCTTGCTGCCTCAGCGCCGCCGCCACCTTTCCATTC AGTCGCCCAACATGGCTGGAGCGCGGCGGAGGTGAGCCGGCCGCCCGCCCGCAGACGCCCCAGCCTACTGCGCCCGAGTCCCGCGGCCCC AGTGGCGCCTCAGCTCTGCGGTGCCGAGGCCCAACGGCTCGATCGCTGCCCGCCGCCAGCATGTTGGGCGCCCCGGACGAGAGCTCCGTG CGGGTGGCTGTCAGGGTCGTAAGAGTGAGGCTGAAAAGCTCTTCTTGAAGGCTATTGAGCTGGATCCCACCAAAGGAAACTGTTACATGC ATTATGGTCAGTTTCTTCTGGAAGAAGCTCGTCTCATAGAAGCAGCTGAGATGGCAAAAAAAGCAGCTGAACTAGACAGCACAGAGTTTG ATGTTGTCTTCAATGCTGCCCACATGCTCAGACAGGCTAGCCTCAATGAAGCAGCTGAGAAGTATTATGATCTGGCAGCCAGGCTGAGGC CTAATTATCCGGCTGCTTTGATGAACCTGGGAGCCATTCTGCACCTCAATGGCAGACTCCAGAAGGCCGAGGCCAACTACCTGCGGGCCC TGCAGCTCAAGCCAGACGATGTCATCACACAGTCCAATCTCCGCAAACTGTGGAACATCATGGAAAAACAAGGCTTAAAGACTTCTAAGA CCTGACACAGGAGGCAGAAGCCCATCCTCCTCCATTTTTAAAAGCTGGCTTCCTTAGCAGACAGAACTTCCCAGCAGTGCTATGACAAGA GCTGGTGTTAGACTTCAAGACCAGGGCAGAGGTCATTGAGGTCACTACCGCTTCTGGAAGAATCCACTTTGCTGTAGGCACAGCTGTTAA CACCAAAAAGGGGAAAGCCGGAAACCTCCTGGAGGATGTCATTGTTACCCATAGACTGTAAACCAGAGCACTTAAAACAGAACCTTTTGG CATTCTTAAAAAGGGAGGGGTGGGTGTGTAAGTCACAGATTTTGTTCATTTTCTGAAAGCTAATTTCAAAATTATGTTGTTCCTTAAACA CTGTGAGAGGAAGTCAGAGTGTCCATTCAGGCATGGCAAACAATTAGGGTTAAGTGTTACGAGGGAGTGATAAACACGTAGTGTGAGTCC CAGTGAGCCGCCGGTTGTCCTAACGCTGCTGTCTTCCCTGTTTGGGACAGCCTGCTTATCAATTTCTGAAGCTTAGAACACTTTTTTTAA TACTGTGTCAAGATCTGTCAGAATCTGCTATGTTTCTTGACCAGTGCACATAATGTTTTATGATTTGGATGTCAGAGGCTTCATTCTTTT GGACATCATTTGCTTTTTATGTTCTGAAAAGGATATGGAGAGTAGAGCTAACCATACTTCACACTCGAGTTGTATGAGGGACTGGGGAGG CCTTATATGTGTCAGGCAGGCATTTTTTAAATTTTAATATCGTCAATATTTTCCCCCAAACTGCCCAGTAGAATTCATTGTATTAATTCT TTTGAAATTACCTTTGAAAATAGCTATTCCTGGAGAATGTGCAAGCTTACATAAGGATAAAGGACAGGGGAGGAGTTTGTAAGCCTTGCA GTTCCAATAACTAACCAACAGGTTATTAGACAAAAGGGAAGGTGTTTTGTGCTTCTCAGATGTTGCTGGTTTAGGAGTGTGTGATGATGC TTGCCAGTGATTTTGTGTTTTGGAAAGGGTAGGTATCGAATGTTAATCACTTTCTAATGGGTACCTAAACAGCAATGCTGATAAATGTTC AAGGAATTATTTTCATCTTAGTTTGTTCTTCTCAAAAGGCATCAAAAACAACTTATTTGAAGCTGCAATAGAGTGTAGCATTAGCCTGCA TGTTTCTAGGTCTTCTGCCAAGTGCTTTTCTCAGTTGAAAACTATTTTTCACTAGCAAAATTGGTATTTTATTTCATTACCTGTTAGTAA CTACTTCAATGATCATTTCACAAGAAAAAGACTATAAATTAAGTAGAGAACAACATTTTTATTGAACATTTTTGGCTTGCAATCAAACTT TGCCACTAAAAATTAACTTCATAAAACACTAGTCCGTTATCAACTTCTTCACAGAGAAAGTAGCTATACTATACCCTACATATTTATTTA TTTATTATTCTACTATAGCAGAATAACAAAACTTGATGCATTAAGCCAGTTCTTTGCAACTGAAAATTACCTGTTTCTCCTTCCCTTTCA CACTCCATGTATATATGATCAGCCTCTCCATTAAAAAGAAGCTGGACATGCAAATACATCATATTATGTTTTCTCCATATTTTATGTTTT TCTATGTATCTGAATACAGTGGGATAAATAATTGAAAGTAGTGTTCCTATGGCATTAGTGTTTTTGTGAGAAGGGTAAATGTAGTGAGAA AGGTTTTTTCATGGCATTAATAAGAAAGCCCTTCTGTAATATATATATTATTTTGTAAACATTTCACTGAAGGGCCAAAAGTTAAATTAT AACTAAATCACTGTGTTTTCAGAATGATATTTAACAACAAACCCGTGGTCAAACCAAAATAGTGGGTTGAAGTGTATTATTCATCTTTTA GTGCATTGGCAATTGCAAAAAAAAAAAAGGAATTTAATATAAGGCTATAGAGATTAATTCAGTGTCTAACATTTGTATTTATTTAAATAG TTATTGACCTATGATGACTTTCTAGTCTTAACATTTTATCTTTTTATTGTTGTTGTTCTTCCTTTCAAAGATGTGGTTCTTAATAGGTTC ACTGAATGCACAGTTGAGGCACTTCTTGTGACACCAGTTCCCAAGTAGCGTTAATAATTGGGCCTGTGTCATAAAATGCACGGATCATTA ATAACTAAATGTCCCTGACACTTTTCACTACAGGGCTGGACTTAGTAACTGACCAACTTCGGGGGGAGGGTTGGGGCAAGGGGGGGTGGG CGTTAGAACATGATCAAAAAATGTCTCCGCTCAGGGATTTATGGTGGATTATTGCAGACAGTGCTAAAAATATAGAGCACAAGACAAGTT TACTAAATTAAAATTTTATTTTTTGAGAAACTGTTATTTGTATAAATTATCAAGATTTGTAGGCTTTCCTTTTGTAGAAATAATTGTTTT >In-frame_ENST00000395670_ENST00000321196_TCGA-78-7150-01A_KIF21A_chr12_39836729_-_TMTC2_chr12_83424577_length(amino acids)=154AA_start in transcript=550_stop in transcript=86 MTIMHVTVSFGGIQLNSLQEELFSLTLTTLTATRTELSSGAPNMLAAGSDRAVGPRHRRAEAPLGPRDSGAVGWGVCGRAAGSPPPRSSH -------------------------------------------------------------- >In-frame_ENST00000544797_ENST00000321196_TCGA-78-7150-01A_KIF21A_chr12_39836729_-_TMTC2_chr12_83424577_length(transcript)=3037nt_BP=133nt AGCCTACTGCGCCCGAGTCCCGCGGCCCCAGTGGCGCCTCAGCTCTGCGGTGCCGAGGCCCAACGGCTCGATCGCTGCCCGCCGCCAGCA TGTTGGGCGCCCCGGACGAGAGCTCCGTGCGGGTGGCTGTCAGGGTCGTAAGAGTGAGGCTGAAAAGCTCTTCTTGAAGGCTATTGAGCT GGATCCCACCAAAGGAAACTGTTACATGCATTATGGTCAGTTTCTTCTGGAAGAAGCTCGTCTCATAGAAGCAGCTGAGATGGCAAAAAA AGCAGCTGAACTAGACAGCACAGAGTTTGATGTTGTCTTCAATGCTGCCCACATGCTCAGACAGGCTAGCCTCAATGAAGCAGCTGAGAA GTATTATGATCTGGCAGCCAGGCTGAGGCCTAATTATCCGGCTGCTTTGATGAACCTGGGAGCCATTCTGCACCTCAATGGCAGACTCCA GAAGGCCGAGGCCAACTACCTGCGGGCCCTGCAGCTCAAGCCAGACGATGTCATCACACAGTCCAATCTCCGCAAACTGTGGAACATCAT GGAAAAACAAGGCTTAAAGACTTCTAAGACCTGACACAGGAGGCAGAAGCCCATCCTCCTCCATTTTTAAAAGCTGGCTTCCTTAGCAGA CAGAACTTCCCAGCAGTGCTATGACAAGAGCTGGTGTTAGACTTCAAGACCAGGGCAGAGGTCATTGAGGTCACTACCGCTTCTGGAAGA ATCCACTTTGCTGTAGGCACAGCTGTTAACACCAAAAAGGGGAAAGCCGGAAACCTCCTGGAGGATGTCATTGTTACCCATAGACTGTAA ACCAGAGCACTTAAAACAGAACCTTTTGGCATTCTTAAAAAGGGAGGGGTGGGTGTGTAAGTCACAGATTTTGTTCATTTTCTGAAAGCT AATTTCAAAATTATGTTGTTCCTTAAACACTGTGAGAGGAAGTCAGAGTGTCCATTCAGGCATGGCAAACAATTAGGGTTAAGTGTTACG AGGGAGTGATAAACACGTAGTGTGAGTCCCAGTGAGCCGCCGGTTGTCCTAACGCTGCTGTCTTCCCTGTTTGGGACAGCCTGCTTATCA ATTTCTGAAGCTTAGAACACTTTTTTTAATACTGTGTCAAGATCTGTCAGAATCTGCTATGTTTCTTGACCAGTGCACATAATGTTTTAT GATTTGGATGTCAGAGGCTTCATTCTTTTGGACATCATTTGCTTTTTATGTTCTGAAAAGGATATGGAGAGTAGAGCTAACCATACTTCA CACTCGAGTTGTATGAGGGACTGGGGAGGCCTTATATGTGTCAGGCAGGCATTTTTTAAATTTTAATATCGTCAATATTTTCCCCCAAAC TGCCCAGTAGAATTCATTGTATTAATTCTTTTGAAATTACCTTTGAAAATAGCTATTCCTGGAGAATGTGCAAGCTTACATAAGGATAAA GGACAGGGGAGGAGTTTGTAAGCCTTGCAGTTCCAATAACTAACCAACAGGTTATTAGACAAAAGGGAAGGTGTTTTGTGCTTCTCAGAT GTTGCTGGTTTAGGAGTGTGTGATGATGCTTGCCAGTGATTTTGTGTTTTGGAAAGGGTAGGTATCGAATGTTAATCACTTTCTAATGGG TACCTAAACAGCAATGCTGATAAATGTTCAAGGAATTATTTTCATCTTAGTTTGTTCTTCTCAAAAGGCATCAAAAACAACTTATTTGAA GCTGCAATAGAGTGTAGCATTAGCCTGCATGTTTCTAGGTCTTCTGCCAAGTGCTTTTCTCAGTTGAAAACTATTTTTCACTAGCAAAAT TGGTATTTTATTTCATTACCTGTTAGTAACTACTTCAATGATCATTTCACAAGAAAAAGACTATAAATTAAGTAGAGAACAACATTTTTA TTGAACATTTTTGGCTTGCAATCAAACTTTGCCACTAAAAATTAACTTCATAAAACACTAGTCCGTTATCAACTTCTTCACAGAGAAAGT AGCTATACTATACCCTACATATTTATTTATTTATTATTCTACTATAGCAGAATAACAAAACTTGATGCATTAAGCCAGTTCTTTGCAACT GAAAATTACCTGTTTCTCCTTCCCTTTCACACTCCATGTATATATGATCAGCCTCTCCATTAAAAAGAAGCTGGACATGCAAATACATCA TATTATGTTTTCTCCATATTTTATGTTTTTCTATGTATCTGAATACAGTGGGATAAATAATTGAAAGTAGTGTTCCTATGGCATTAGTGT TTTTGTGAGAAGGGTAAATGTAGTGAGAAAGGTTTTTTCATGGCATTAATAAGAAAGCCCTTCTGTAATATATATATTATTTTGTAAACA TTTCACTGAAGGGCCAAAAGTTAAATTATAACTAAATCACTGTGTTTTCAGAATGATATTTAACAACAAACCCGTGGTCAAACCAAAATA GTGGGTTGAAGTGTATTATTCATCTTTTAGTGCATTGGCAATTGCAAAAAAAAAAAAGGAATTTAATATAAGGCTATAGAGATTAATTCA GTGTCTAACATTTGTATTTATTTAAATAGTTATTGACCTATGATGACTTTCTAGTCTTAACATTTTATCTTTTTATTGTTGTTGTTCTTC CTTTCAAAGATGTGGTTCTTAATAGGTTCACTGAATGCACAGTTGAGGCACTTCTTGTGACACCAGTTCCCAAGTAGCGTTAATAATTGG GCCTGTGTCATAAAATGCACGGATCATTAATAACTAAATGTCCCTGACACTTTTCACTACAGGGCTGGACTTAGTAACTGACCAACTTCG GGGGGAGGGTTGGGGCAAGGGGGGGTGGGCGTTAGAACATGATCAAAAAATGTCTCCGCTCAGGGATTTATGGTGGATTATTGCAGACAG TGCTAAAAATATAGAGCACAAGACAAGTTTACTAAATTAAAATTTTATTTTTTGAGAAACTGTTATTTGTATAAATTATCAAGATTTGTA >In-frame_ENST00000544797_ENST00000321196_TCGA-78-7150-01A_KIF21A_chr12_39836729_-_TMTC2_chr12_83424577_length(amino acids)=136AA_start in transcript=163_stop in transcript=573 MKAIELDPTKGNCYMHYGQFLLEEARLIEAAEMAKKAAELDSTEFDVVFNAAHMLRQASLNEAAEKYYDLAARLRPNYPAALMNLGAILH -------------------------------------------------------------- >In-frame_ENST00000361418_ENST00000321196_TCGA-78-7150-01A_KIF21A_chr12_39836729_-_TMTC2_chr12_83424577_length(transcript)=2964nt_BP=60nt GCTGCCCGCCGCCAGCATGTTGGGCGCCCCGGACGAGAGCTCCGTGCGGGTGGCTGTCAGGGTCGTAAGAGTGAGGCTGAAAAGCTCTTC TTGAAGGCTATTGAGCTGGATCCCACCAAAGGAAACTGTTACATGCATTATGGTCAGTTTCTTCTGGAAGAAGCTCGTCTCATAGAAGCA GCTGAGATGGCAAAAAAAGCAGCTGAACTAGACAGCACAGAGTTTGATGTTGTCTTCAATGCTGCCCACATGCTCAGACAGGCTAGCCTC AATGAAGCAGCTGAGAAGTATTATGATCTGGCAGCCAGGCTGAGGCCTAATTATCCGGCTGCTTTGATGAACCTGGGAGCCATTCTGCAC CTCAATGGCAGACTCCAGAAGGCCGAGGCCAACTACCTGCGGGCCCTGCAGCTCAAGCCAGACGATGTCATCACACAGTCCAATCTCCGC AAACTGTGGAACATCATGGAAAAACAAGGCTTAAAGACTTCTAAGACCTGACACAGGAGGCAGAAGCCCATCCTCCTCCATTTTTAAAAG CTGGCTTCCTTAGCAGACAGAACTTCCCAGCAGTGCTATGACAAGAGCTGGTGTTAGACTTCAAGACCAGGGCAGAGGTCATTGAGGTCA CTACCGCTTCTGGAAGAATCCACTTTGCTGTAGGCACAGCTGTTAACACCAAAAAGGGGAAAGCCGGAAACCTCCTGGAGGATGTCATTG TTACCCATAGACTGTAAACCAGAGCACTTAAAACAGAACCTTTTGGCATTCTTAAAAAGGGAGGGGTGGGTGTGTAAGTCACAGATTTTG TTCATTTTCTGAAAGCTAATTTCAAAATTATGTTGTTCCTTAAACACTGTGAGAGGAAGTCAGAGTGTCCATTCAGGCATGGCAAACAAT TAGGGTTAAGTGTTACGAGGGAGTGATAAACACGTAGTGTGAGTCCCAGTGAGCCGCCGGTTGTCCTAACGCTGCTGTCTTCCCTGTTTG GGACAGCCTGCTTATCAATTTCTGAAGCTTAGAACACTTTTTTTAATACTGTGTCAAGATCTGTCAGAATCTGCTATGTTTCTTGACCAG TGCACATAATGTTTTATGATTTGGATGTCAGAGGCTTCATTCTTTTGGACATCATTTGCTTTTTATGTTCTGAAAAGGATATGGAGAGTA GAGCTAACCATACTTCACACTCGAGTTGTATGAGGGACTGGGGAGGCCTTATATGTGTCAGGCAGGCATTTTTTAAATTTTAATATCGTC AATATTTTCCCCCAAACTGCCCAGTAGAATTCATTGTATTAATTCTTTTGAAATTACCTTTGAAAATAGCTATTCCTGGAGAATGTGCAA GCTTACATAAGGATAAAGGACAGGGGAGGAGTTTGTAAGCCTTGCAGTTCCAATAACTAACCAACAGGTTATTAGACAAAAGGGAAGGTG TTTTGTGCTTCTCAGATGTTGCTGGTTTAGGAGTGTGTGATGATGCTTGCCAGTGATTTTGTGTTTTGGAAAGGGTAGGTATCGAATGTT AATCACTTTCTAATGGGTACCTAAACAGCAATGCTGATAAATGTTCAAGGAATTATTTTCATCTTAGTTTGTTCTTCTCAAAAGGCATCA AAAACAACTTATTTGAAGCTGCAATAGAGTGTAGCATTAGCCTGCATGTTTCTAGGTCTTCTGCCAAGTGCTTTTCTCAGTTGAAAACTA TTTTTCACTAGCAAAATTGGTATTTTATTTCATTACCTGTTAGTAACTACTTCAATGATCATTTCACAAGAAAAAGACTATAAATTAAGT AGAGAACAACATTTTTATTGAACATTTTTGGCTTGCAATCAAACTTTGCCACTAAAAATTAACTTCATAAAACACTAGTCCGTTATCAAC TTCTTCACAGAGAAAGTAGCTATACTATACCCTACATATTTATTTATTTATTATTCTACTATAGCAGAATAACAAAACTTGATGCATTAA GCCAGTTCTTTGCAACTGAAAATTACCTGTTTCTCCTTCCCTTTCACACTCCATGTATATATGATCAGCCTCTCCATTAAAAAGAAGCTG GACATGCAAATACATCATATTATGTTTTCTCCATATTTTATGTTTTTCTATGTATCTGAATACAGTGGGATAAATAATTGAAAGTAGTGT TCCTATGGCATTAGTGTTTTTGTGAGAAGGGTAAATGTAGTGAGAAAGGTTTTTTCATGGCATTAATAAGAAAGCCCTTCTGTAATATAT ATATTATTTTGTAAACATTTCACTGAAGGGCCAAAAGTTAAATTATAACTAAATCACTGTGTTTTCAGAATGATATTTAACAACAAACCC GTGGTCAAACCAAAATAGTGGGTTGAAGTGTATTATTCATCTTTTAGTGCATTGGCAATTGCAAAAAAAAAAAAGGAATTTAATATAAGG CTATAGAGATTAATTCAGTGTCTAACATTTGTATTTATTTAAATAGTTATTGACCTATGATGACTTTCTAGTCTTAACATTTTATCTTTT TATTGTTGTTGTTCTTCCTTTCAAAGATGTGGTTCTTAATAGGTTCACTGAATGCACAGTTGAGGCACTTCTTGTGACACCAGTTCCCAA GTAGCGTTAATAATTGGGCCTGTGTCATAAAATGCACGGATCATTAATAACTAAATGTCCCTGACACTTTTCACTACAGGGCTGGACTTA GTAACTGACCAACTTCGGGGGGAGGGTTGGGGCAAGGGGGGGTGGGCGTTAGAACATGATCAAAAAATGTCTCCGCTCAGGGATTTATGG TGGATTATTGCAGACAGTGCTAAAAATATAGAGCACAAGACAAGTTTACTAAATTAAAATTTTATTTTTTGAGAAACTGTTATTTGTATA >In-frame_ENST00000361418_ENST00000321196_TCGA-78-7150-01A_KIF21A_chr12_39836729_-_TMTC2_chr12_83424577_length(amino acids)=136AA_start in transcript=90_stop in transcript=500 MKAIELDPTKGNCYMHYGQFLLEEARLIEAAEMAKKAAELDSTEFDVVFNAAHMLRQASLNEAAEKYYDLAARLRPNYPAALMNLGAILH -------------------------------------------------------------- >In-frame_ENST00000541463_ENST00000321196_TCGA-78-7150-01A_KIF21A_chr12_39836729_-_TMTC2_chr12_83424577_length(transcript)=2948nt_BP=44nt ATGTTGGGCGCCCCGGACGAGAGCTCCGTGCGGGTGGCTGTCAGGGTCGTAAGAGTGAGGCTGAAAAGCTCTTCTTGAAGGCTATTGAGC TGGATCCCACCAAAGGAAACTGTTACATGCATTATGGTCAGTTTCTTCTGGAAGAAGCTCGTCTCATAGAAGCAGCTGAGATGGCAAAAA AAGCAGCTGAACTAGACAGCACAGAGTTTGATGTTGTCTTCAATGCTGCCCACATGCTCAGACAGGCTAGCCTCAATGAAGCAGCTGAGA AGTATTATGATCTGGCAGCCAGGCTGAGGCCTAATTATCCGGCTGCTTTGATGAACCTGGGAGCCATTCTGCACCTCAATGGCAGACTCC AGAAGGCCGAGGCCAACTACCTGCGGGCCCTGCAGCTCAAGCCAGACGATGTCATCACACAGTCCAATCTCCGCAAACTGTGGAACATCA TGGAAAAACAAGGCTTAAAGACTTCTAAGACCTGACACAGGAGGCAGAAGCCCATCCTCCTCCATTTTTAAAAGCTGGCTTCCTTAGCAG ACAGAACTTCCCAGCAGTGCTATGACAAGAGCTGGTGTTAGACTTCAAGACCAGGGCAGAGGTCATTGAGGTCACTACCGCTTCTGGAAG AATCCACTTTGCTGTAGGCACAGCTGTTAACACCAAAAAGGGGAAAGCCGGAAACCTCCTGGAGGATGTCATTGTTACCCATAGACTGTA AACCAGAGCACTTAAAACAGAACCTTTTGGCATTCTTAAAAAGGGAGGGGTGGGTGTGTAAGTCACAGATTTTGTTCATTTTCTGAAAGC TAATTTCAAAATTATGTTGTTCCTTAAACACTGTGAGAGGAAGTCAGAGTGTCCATTCAGGCATGGCAAACAATTAGGGTTAAGTGTTAC GAGGGAGTGATAAACACGTAGTGTGAGTCCCAGTGAGCCGCCGGTTGTCCTAACGCTGCTGTCTTCCCTGTTTGGGACAGCCTGCTTATC AATTTCTGAAGCTTAGAACACTTTTTTTAATACTGTGTCAAGATCTGTCAGAATCTGCTATGTTTCTTGACCAGTGCACATAATGTTTTA TGATTTGGATGTCAGAGGCTTCATTCTTTTGGACATCATTTGCTTTTTATGTTCTGAAAAGGATATGGAGAGTAGAGCTAACCATACTTC ACACTCGAGTTGTATGAGGGACTGGGGAGGCCTTATATGTGTCAGGCAGGCATTTTTTAAATTTTAATATCGTCAATATTTTCCCCCAAA CTGCCCAGTAGAATTCATTGTATTAATTCTTTTGAAATTACCTTTGAAAATAGCTATTCCTGGAGAATGTGCAAGCTTACATAAGGATAA AGGACAGGGGAGGAGTTTGTAAGCCTTGCAGTTCCAATAACTAACCAACAGGTTATTAGACAAAAGGGAAGGTGTTTTGTGCTTCTCAGA TGTTGCTGGTTTAGGAGTGTGTGATGATGCTTGCCAGTGATTTTGTGTTTTGGAAAGGGTAGGTATCGAATGTTAATCACTTTCTAATGG GTACCTAAACAGCAATGCTGATAAATGTTCAAGGAATTATTTTCATCTTAGTTTGTTCTTCTCAAAAGGCATCAAAAACAACTTATTTGA AGCTGCAATAGAGTGTAGCATTAGCCTGCATGTTTCTAGGTCTTCTGCCAAGTGCTTTTCTCAGTTGAAAACTATTTTTCACTAGCAAAA TTGGTATTTTATTTCATTACCTGTTAGTAACTACTTCAATGATCATTTCACAAGAAAAAGACTATAAATTAAGTAGAGAACAACATTTTT ATTGAACATTTTTGGCTTGCAATCAAACTTTGCCACTAAAAATTAACTTCATAAAACACTAGTCCGTTATCAACTTCTTCACAGAGAAAG TAGCTATACTATACCCTACATATTTATTTATTTATTATTCTACTATAGCAGAATAACAAAACTTGATGCATTAAGCCAGTTCTTTGCAAC TGAAAATTACCTGTTTCTCCTTCCCTTTCACACTCCATGTATATATGATCAGCCTCTCCATTAAAAAGAAGCTGGACATGCAAATACATC ATATTATGTTTTCTCCATATTTTATGTTTTTCTATGTATCTGAATACAGTGGGATAAATAATTGAAAGTAGTGTTCCTATGGCATTAGTG TTTTTGTGAGAAGGGTAAATGTAGTGAGAAAGGTTTTTTCATGGCATTAATAAGAAAGCCCTTCTGTAATATATATATTATTTTGTAAAC ATTTCACTGAAGGGCCAAAAGTTAAATTATAACTAAATCACTGTGTTTTCAGAATGATATTTAACAACAAACCCGTGGTCAAACCAAAAT AGTGGGTTGAAGTGTATTATTCATCTTTTAGTGCATTGGCAATTGCAAAAAAAAAAAAGGAATTTAATATAAGGCTATAGAGATTAATTC AGTGTCTAACATTTGTATTTATTTAAATAGTTATTGACCTATGATGACTTTCTAGTCTTAACATTTTATCTTTTTATTGTTGTTGTTCTT CCTTTCAAAGATGTGGTTCTTAATAGGTTCACTGAATGCACAGTTGAGGCACTTCTTGTGACACCAGTTCCCAAGTAGCGTTAATAATTG GGCCTGTGTCATAAAATGCACGGATCATTAATAACTAAATGTCCCTGACACTTTTCACTACAGGGCTGGACTTAGTAACTGACCAACTTC GGGGGGAGGGTTGGGGCAAGGGGGGGTGGGCGTTAGAACATGATCAAAAAATGTCTCCGCTCAGGGATTTATGGTGGATTATTGCAGACA GTGCTAAAAATATAGAGCACAAGACAAGTTTACTAAATTAAAATTTTATTTTTTGAGAAACTGTTATTTGTATAAATTATCAAGATTTGT >In-frame_ENST00000541463_ENST00000321196_TCGA-78-7150-01A_KIF21A_chr12_39836729_-_TMTC2_chr12_83424577_length(amino acids)=136AA_start in transcript=74_stop in transcript=484 MKAIELDPTKGNCYMHYGQFLLEEARLIEAAEMAKKAAELDSTEFDVVFNAAHMLRQASLNEAAEKYYDLAARLRPNYPAALMNLGAILH -------------------------------------------------------------- |
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Fusion Gene PPI Analysis for KIF21A-TMTC2 |
Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in |
Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
Hgene | Hgene's interactors | Tgene | Tgene's interactors |
- Retained PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
- Lost PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
- Retained PPIs, but lost function due to frame-shift fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Related Drugs for KIF21A-TMTC2 |
Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.8 2021-05-08) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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Related Diseases for KIF21A-TMTC2 |
Diseases associated with fusion partners. (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Hgene | KIF21A | C1851102 | Fibrosis Of Extraocular Muscles, Congenital, 1 | 5 | CTD_human;GENOMICS_ENGLAND;UNIPROT |
Hgene | KIF21A | C0149925 | Small cell carcinoma of lung | 1 | CTD_human |
Hgene | KIF21A | C1302995 | Congenital Fibrosis of the Extraocular Muscles | 1 | GENOMICS_ENGLAND |
Tgene | TMTC2 | C0011052 | Prelingual Deafness | 1 | CTD_human |
Tgene | TMTC2 | C0011053 | Deafness | 1 | CTD_human;GENOMICS_ENGLAND |
Tgene | TMTC2 | C0086395 | Hearing Loss, Extreme | 1 | CTD_human |
Tgene | TMTC2 | C0581883 | Complete Hearing Loss | 1 | CTD_human |
Tgene | TMTC2 | C0751068 | Deafness, Acquired | 1 | CTD_human |
Tgene | TMTC2 | C3665473 | Bilateral Deafness | 1 | CTD_human |
Tgene | TMTC2 | C3711374 | Nonsyndromic Deafness | 1 | CLINGEN |
Tgene | TMTC2 | C4082305 | Deaf Mutism | 1 | CTD_human |