|
Fusion Gene Summary | |
Fusion Gene ORF analysis | |
Fusion Genomic Features | |
Fusion Protein Features | |
Fusion Gene Sequence | |
Fusion Gene PPI analysis | |
Related Drugs | |
Related Diseases |
Fusion gene:LARGE-OPA3 (FusionGDB2 ID:43833) |
Fusion Gene Summary for LARGE-OPA3 |
Fusion gene summary |
Fusion gene information | Fusion gene name: LARGE-OPA3 | Fusion gene ID: 43833 | Hgene | Tgene | Gene symbol | LARGE | OPA3 | Gene ID | 9215 | 80207 |
Gene name | LARGE xylosyl- and glucuronyltransferase 1 | outer mitochondrial membrane lipid metabolism regulator OPA3 | |
Synonyms | LARGE|MDC1D|MDDGA6|MDDGB6 | MGA3 | |
Cytomap | 22q12.3 | 19q13.32 | |
Type of gene | protein-coding | protein-coding | |
Description | LARGE xylosyl- and glucuronyltransferase 1acetylglucosaminyltransferase-like 1Aacetylglucosaminyltransferase-like proteinglycosyltransferase-like protein LARGE1 | optic atrophy 3 proteinOPA3 outer mitochondrial membrane lipid metabolism regulatorOptic atrophy 3 (Iraqi-Jewish 'optic atrophy plus')optic atrophy 3 (autosomal recessive, with chorea and spastic paraplegia) | |
Modification date | 20200328 | 20200313 | |
UniProtAcc | GYLTL1B,LARGE2 | . | |
Ensembl transtripts involved in fusion gene | ENST00000337431, ENST00000354992, ENST00000397394, ENST00000402320, ENST00000452586, ENST00000437602, ENST00000421232, | ENST00000323060, ENST00000263275, ENST00000544371, | |
Fusion gene scores | * DoF score | 10 X 9 X 6=540 | 14 X 10 X 7=980 |
# samples | 13 | 16 | |
** MAII score | log2(13/540*10)=-2.05444778402238 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(16/980*10)=-2.61470984411521 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
Context | PubMed: LARGE [Title/Abstract] AND OPA3 [Title/Abstract] AND fusion [Title/Abstract] | ||
Most frequent breakpoint | LARGE(33960833)-OPA3(46057169), # samples:1 LARGE(33960833)-OPA3(46032714), # samples:1 LARGE(33960834)-OPA3(46057169), # samples:1 LARGE(33960834)-OPA3(46032714), # samples:1 | ||
Anticipated loss of major functional domain due to fusion event. | LARGE-OPA3 seems lost the major protein functional domain in Hgene partner, which is a essential gene due to the frame-shifted ORF. |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
Partner | Gene | GO ID | GO term | PubMed ID |
Hgene | LARGE | GO:0035269 | protein O-linked mannosylation | 22223806|25138275|25279697|25279699 |
Fusion gene breakpoints across LARGE (5'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
Fusion gene breakpoints across OPA3 (3'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Source | Disease | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
ChimerDB4 | OV | TCGA-36-1574 | LARGE | chr22 | 33960833 | - | OPA3 | chr19 | 46057169 | - |
ChimerDB4 | OV | TCGA-36-1574 | LARGE | chr22 | 33960833 | - | OPA3 | chr19 | 46032714 | - |
ChimerDB4 | OV | TCGA-36-1574-01A | LARGE | chr22 | 33960834 | - | OPA3 | chr19 | 46057169 | - |
ChimerDB4 | OV | TCGA-36-1574-01A | LARGE | chr22 | 33960834 | - | OPA3 | chr19 | 46032714 | - |
Top |
Fusion Gene ORF analysis for LARGE-OPA3 |
Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
5CDS-intron | ENST00000337431 | ENST00000323060 | LARGE | chr22 | 33960833 | - | OPA3 | chr19 | 46057169 | - |
5CDS-intron | ENST00000337431 | ENST00000263275 | LARGE | chr22 | 33960833 | - | OPA3 | chr19 | 46057169 | - |
5CDS-5UTR | ENST00000337431 | ENST00000544371 | LARGE | chr22 | 33960833 | - | OPA3 | chr19 | 46057169 | - |
5CDS-intron | ENST00000354992 | ENST00000323060 | LARGE | chr22 | 33960833 | - | OPA3 | chr19 | 46057169 | - |
5CDS-intron | ENST00000354992 | ENST00000263275 | LARGE | chr22 | 33960833 | - | OPA3 | chr19 | 46057169 | - |
5CDS-5UTR | ENST00000354992 | ENST00000544371 | LARGE | chr22 | 33960833 | - | OPA3 | chr19 | 46057169 | - |
5CDS-intron | ENST00000397394 | ENST00000323060 | LARGE | chr22 | 33960833 | - | OPA3 | chr19 | 46057169 | - |
5CDS-intron | ENST00000397394 | ENST00000263275 | LARGE | chr22 | 33960833 | - | OPA3 | chr19 | 46057169 | - |
5CDS-5UTR | ENST00000397394 | ENST00000544371 | LARGE | chr22 | 33960833 | - | OPA3 | chr19 | 46057169 | - |
5CDS-intron | ENST00000402320 | ENST00000323060 | LARGE | chr22 | 33960833 | - | OPA3 | chr19 | 46057169 | - |
5CDS-intron | ENST00000402320 | ENST00000263275 | LARGE | chr22 | 33960833 | - | OPA3 | chr19 | 46057169 | - |
5CDS-5UTR | ENST00000402320 | ENST00000544371 | LARGE | chr22 | 33960833 | - | OPA3 | chr19 | 46057169 | - |
5CDS-intron | ENST00000452586 | ENST00000323060 | LARGE | chr22 | 33960833 | - | OPA3 | chr19 | 46057169 | - |
5CDS-intron | ENST00000452586 | ENST00000263275 | LARGE | chr22 | 33960833 | - | OPA3 | chr19 | 46057169 | - |
5CDS-5UTR | ENST00000452586 | ENST00000544371 | LARGE | chr22 | 33960833 | - | OPA3 | chr19 | 46057169 | - |
5CDS-intron | ENST00000437602 | ENST00000323060 | LARGE | chr22 | 33960833 | - | OPA3 | chr19 | 46057169 | - |
5CDS-intron | ENST00000437602 | ENST00000263275 | LARGE | chr22 | 33960833 | - | OPA3 | chr19 | 46057169 | - |
5CDS-5UTR | ENST00000437602 | ENST00000544371 | LARGE | chr22 | 33960833 | - | OPA3 | chr19 | 46057169 | - |
intron-intron | ENST00000421232 | ENST00000323060 | LARGE | chr22 | 33960833 | - | OPA3 | chr19 | 46057169 | - |
intron-intron | ENST00000421232 | ENST00000263275 | LARGE | chr22 | 33960833 | - | OPA3 | chr19 | 46057169 | - |
intron-5UTR | ENST00000421232 | ENST00000544371 | LARGE | chr22 | 33960833 | - | OPA3 | chr19 | 46057169 | - |
Frame-shift | ENST00000337431 | ENST00000323060 | LARGE | chr22 | 33960833 | - | OPA3 | chr19 | 46032714 | - |
5CDS-intron | ENST00000337431 | ENST00000263275 | LARGE | chr22 | 33960833 | - | OPA3 | chr19 | 46032714 | - |
5CDS-intron | ENST00000337431 | ENST00000544371 | LARGE | chr22 | 33960833 | - | OPA3 | chr19 | 46032714 | - |
Frame-shift | ENST00000354992 | ENST00000323060 | LARGE | chr22 | 33960833 | - | OPA3 | chr19 | 46032714 | - |
5CDS-intron | ENST00000354992 | ENST00000263275 | LARGE | chr22 | 33960833 | - | OPA3 | chr19 | 46032714 | - |
5CDS-intron | ENST00000354992 | ENST00000544371 | LARGE | chr22 | 33960833 | - | OPA3 | chr19 | 46032714 | - |
Frame-shift | ENST00000397394 | ENST00000323060 | LARGE | chr22 | 33960833 | - | OPA3 | chr19 | 46032714 | - |
5CDS-intron | ENST00000397394 | ENST00000263275 | LARGE | chr22 | 33960833 | - | OPA3 | chr19 | 46032714 | - |
5CDS-intron | ENST00000397394 | ENST00000544371 | LARGE | chr22 | 33960833 | - | OPA3 | chr19 | 46032714 | - |
Frame-shift | ENST00000402320 | ENST00000323060 | LARGE | chr22 | 33960833 | - | OPA3 | chr19 | 46032714 | - |
5CDS-intron | ENST00000402320 | ENST00000263275 | LARGE | chr22 | 33960833 | - | OPA3 | chr19 | 46032714 | - |
5CDS-intron | ENST00000402320 | ENST00000544371 | LARGE | chr22 | 33960833 | - | OPA3 | chr19 | 46032714 | - |
In-frame | ENST00000452586 | ENST00000323060 | LARGE | chr22 | 33960833 | - | OPA3 | chr19 | 46032714 | - |
5CDS-intron | ENST00000452586 | ENST00000263275 | LARGE | chr22 | 33960833 | - | OPA3 | chr19 | 46032714 | - |
5CDS-intron | ENST00000452586 | ENST00000544371 | LARGE | chr22 | 33960833 | - | OPA3 | chr19 | 46032714 | - |
Frame-shift | ENST00000437602 | ENST00000323060 | LARGE | chr22 | 33960833 | - | OPA3 | chr19 | 46032714 | - |
5CDS-intron | ENST00000437602 | ENST00000263275 | LARGE | chr22 | 33960833 | - | OPA3 | chr19 | 46032714 | - |
5CDS-intron | ENST00000437602 | ENST00000544371 | LARGE | chr22 | 33960833 | - | OPA3 | chr19 | 46032714 | - |
intron-3CDS | ENST00000421232 | ENST00000323060 | LARGE | chr22 | 33960833 | - | OPA3 | chr19 | 46032714 | - |
intron-intron | ENST00000421232 | ENST00000263275 | LARGE | chr22 | 33960833 | - | OPA3 | chr19 | 46032714 | - |
intron-intron | ENST00000421232 | ENST00000544371 | LARGE | chr22 | 33960833 | - | OPA3 | chr19 | 46032714 | - |
5CDS-intron | ENST00000337431 | ENST00000323060 | LARGE | chr22 | 33960834 | - | OPA3 | chr19 | 46057169 | - |
5CDS-intron | ENST00000337431 | ENST00000263275 | LARGE | chr22 | 33960834 | - | OPA3 | chr19 | 46057169 | - |
5CDS-5UTR | ENST00000337431 | ENST00000544371 | LARGE | chr22 | 33960834 | - | OPA3 | chr19 | 46057169 | - |
5CDS-intron | ENST00000354992 | ENST00000323060 | LARGE | chr22 | 33960834 | - | OPA3 | chr19 | 46057169 | - |
5CDS-intron | ENST00000354992 | ENST00000263275 | LARGE | chr22 | 33960834 | - | OPA3 | chr19 | 46057169 | - |
5CDS-5UTR | ENST00000354992 | ENST00000544371 | LARGE | chr22 | 33960834 | - | OPA3 | chr19 | 46057169 | - |
5CDS-intron | ENST00000397394 | ENST00000323060 | LARGE | chr22 | 33960834 | - | OPA3 | chr19 | 46057169 | - |
5CDS-intron | ENST00000397394 | ENST00000263275 | LARGE | chr22 | 33960834 | - | OPA3 | chr19 | 46057169 | - |
5CDS-5UTR | ENST00000397394 | ENST00000544371 | LARGE | chr22 | 33960834 | - | OPA3 | chr19 | 46057169 | - |
5CDS-intron | ENST00000402320 | ENST00000323060 | LARGE | chr22 | 33960834 | - | OPA3 | chr19 | 46057169 | - |
5CDS-intron | ENST00000402320 | ENST00000263275 | LARGE | chr22 | 33960834 | - | OPA3 | chr19 | 46057169 | - |
5CDS-5UTR | ENST00000402320 | ENST00000544371 | LARGE | chr22 | 33960834 | - | OPA3 | chr19 | 46057169 | - |
5CDS-intron | ENST00000452586 | ENST00000323060 | LARGE | chr22 | 33960834 | - | OPA3 | chr19 | 46057169 | - |
5CDS-intron | ENST00000452586 | ENST00000263275 | LARGE | chr22 | 33960834 | - | OPA3 | chr19 | 46057169 | - |
5CDS-5UTR | ENST00000452586 | ENST00000544371 | LARGE | chr22 | 33960834 | - | OPA3 | chr19 | 46057169 | - |
5CDS-intron | ENST00000437602 | ENST00000323060 | LARGE | chr22 | 33960834 | - | OPA3 | chr19 | 46057169 | - |
5CDS-intron | ENST00000437602 | ENST00000263275 | LARGE | chr22 | 33960834 | - | OPA3 | chr19 | 46057169 | - |
5CDS-5UTR | ENST00000437602 | ENST00000544371 | LARGE | chr22 | 33960834 | - | OPA3 | chr19 | 46057169 | - |
intron-intron | ENST00000421232 | ENST00000323060 | LARGE | chr22 | 33960834 | - | OPA3 | chr19 | 46057169 | - |
intron-intron | ENST00000421232 | ENST00000263275 | LARGE | chr22 | 33960834 | - | OPA3 | chr19 | 46057169 | - |
intron-5UTR | ENST00000421232 | ENST00000544371 | LARGE | chr22 | 33960834 | - | OPA3 | chr19 | 46057169 | - |
Frame-shift | ENST00000337431 | ENST00000323060 | LARGE | chr22 | 33960834 | - | OPA3 | chr19 | 46032714 | - |
5CDS-intron | ENST00000337431 | ENST00000263275 | LARGE | chr22 | 33960834 | - | OPA3 | chr19 | 46032714 | - |
5CDS-intron | ENST00000337431 | ENST00000544371 | LARGE | chr22 | 33960834 | - | OPA3 | chr19 | 46032714 | - |
Frame-shift | ENST00000354992 | ENST00000323060 | LARGE | chr22 | 33960834 | - | OPA3 | chr19 | 46032714 | - |
5CDS-intron | ENST00000354992 | ENST00000263275 | LARGE | chr22 | 33960834 | - | OPA3 | chr19 | 46032714 | - |
5CDS-intron | ENST00000354992 | ENST00000544371 | LARGE | chr22 | 33960834 | - | OPA3 | chr19 | 46032714 | - |
Frame-shift | ENST00000397394 | ENST00000323060 | LARGE | chr22 | 33960834 | - | OPA3 | chr19 | 46032714 | - |
5CDS-intron | ENST00000397394 | ENST00000263275 | LARGE | chr22 | 33960834 | - | OPA3 | chr19 | 46032714 | - |
5CDS-intron | ENST00000397394 | ENST00000544371 | LARGE | chr22 | 33960834 | - | OPA3 | chr19 | 46032714 | - |
Frame-shift | ENST00000402320 | ENST00000323060 | LARGE | chr22 | 33960834 | - | OPA3 | chr19 | 46032714 | - |
5CDS-intron | ENST00000402320 | ENST00000263275 | LARGE | chr22 | 33960834 | - | OPA3 | chr19 | 46032714 | - |
5CDS-intron | ENST00000402320 | ENST00000544371 | LARGE | chr22 | 33960834 | - | OPA3 | chr19 | 46032714 | - |
In-frame | ENST00000452586 | ENST00000323060 | LARGE | chr22 | 33960834 | - | OPA3 | chr19 | 46032714 | - |
5CDS-intron | ENST00000452586 | ENST00000263275 | LARGE | chr22 | 33960834 | - | OPA3 | chr19 | 46032714 | - |
5CDS-intron | ENST00000452586 | ENST00000544371 | LARGE | chr22 | 33960834 | - | OPA3 | chr19 | 46032714 | - |
Frame-shift | ENST00000437602 | ENST00000323060 | LARGE | chr22 | 33960834 | - | OPA3 | chr19 | 46032714 | - |
5CDS-intron | ENST00000437602 | ENST00000263275 | LARGE | chr22 | 33960834 | - | OPA3 | chr19 | 46032714 | - |
5CDS-intron | ENST00000437602 | ENST00000544371 | LARGE | chr22 | 33960834 | - | OPA3 | chr19 | 46032714 | - |
intron-3CDS | ENST00000421232 | ENST00000323060 | LARGE | chr22 | 33960834 | - | OPA3 | chr19 | 46032714 | - |
intron-intron | ENST00000421232 | ENST00000263275 | LARGE | chr22 | 33960834 | - | OPA3 | chr19 | 46032714 | - |
intron-intron | ENST00000421232 | ENST00000544371 | LARGE | chr22 | 33960834 | - | OPA3 | chr19 | 46032714 | - |
ORFfinder result based on the fusion transcript sequence of in-frame fusion genes. |
Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | Seq length (transcript) | BP loci (transcript) | Predicted start (transcript) | Predicted stop (transcript) | Seq length (amino acids) |
ENST00000452586 | LARGE | chr22 | 33960833 | - | ENST00000323060 | OPA3 | chr19 | 46032714 | - | 2311 | 281 | 97 | 681 | 194 |
ENST00000452586 | LARGE | chr22 | 33960834 | - | ENST00000323060 | OPA3 | chr19 | 46032714 | - | 2311 | 281 | 97 | 681 | 194 |
DeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated. |
Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | No-coding score | Coding score |
ENST00000452586 | ENST00000323060 | LARGE | chr22 | 33960833 | - | OPA3 | chr19 | 46032714 | - | 0.028001288 | 0.9719987 |
ENST00000452586 | ENST00000323060 | LARGE | chr22 | 33960834 | - | OPA3 | chr19 | 46032714 | - | 0.028001288 | 0.9719987 |
Top |
Fusion Genomic Features for LARGE-OPA3 |
FusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints. |
Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | 1-p | p (fusion gene breakpoint) |
Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page. |
Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page. |
Top |
Fusion Protein Features for LARGE-OPA3 |
Go to FGviewer for the breakpoints of chr22:33960833-chr19:46032714 - FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels. |
Main function of each fusion partner protein. (from UniProt) |
Hgene | Tgene |
LARGE | . |
721 | FUNCTION: Might normally function as a transcriptional repressor. EWS-fusion-proteins (EFPS) may play a role in the tumorigenic process. They may disturb gene expression by mimicking, or interfering with the normal function of CTD-POLII within the transcription initiation complex. They may also contribute to an aberrant activation of the fusion protein target genes. |
Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | LARGE | chr22:33960833 | chr19:46032714 | ENST00000337431 | - | 7 | 15 | 53_95 | 262.3333333333333 | 705.0 | Coiled coil | Ontology_term=ECO:0000255 |
Hgene | LARGE | chr22:33960833 | chr19:46032714 | ENST00000354992 | - | 7 | 16 | 53_95 | 262.3333333333333 | 757.0 | Coiled coil | Ontology_term=ECO:0000255 |
Hgene | LARGE | chr22:33960833 | chr19:46032714 | ENST00000397394 | - | 6 | 15 | 53_95 | 262.3333333333333 | 757.0 | Coiled coil | Ontology_term=ECO:0000255 |
Hgene | LARGE | chr22:33960833 | chr19:46032714 | ENST00000402320 | - | 6 | 14 | 53_95 | 262.3333333333333 | 705.0 | Coiled coil | Ontology_term=ECO:0000255 |
Hgene | LARGE | chr22:33960834 | chr19:46032714 | ENST00000337431 | - | 7 | 15 | 53_95 | 262.3333333333333 | 705.0 | Coiled coil | Ontology_term=ECO:0000255 |
Hgene | LARGE | chr22:33960834 | chr19:46032714 | ENST00000354992 | - | 7 | 16 | 53_95 | 262.3333333333333 | 757.0 | Coiled coil | Ontology_term=ECO:0000255 |
Hgene | LARGE | chr22:33960834 | chr19:46032714 | ENST00000397394 | - | 6 | 15 | 53_95 | 262.3333333333333 | 757.0 | Coiled coil | Ontology_term=ECO:0000255 |
Hgene | LARGE | chr22:33960834 | chr19:46032714 | ENST00000402320 | - | 6 | 14 | 53_95 | 262.3333333333333 | 705.0 | Coiled coil | Ontology_term=ECO:0000255 |
Hgene | LARGE | chr22:33960833 | chr19:46032714 | ENST00000337431 | - | 7 | 15 | 1_10 | 262.3333333333333 | 705.0 | Topological domain | Cytoplasmic |
Hgene | LARGE | chr22:33960833 | chr19:46032714 | ENST00000354992 | - | 7 | 16 | 1_10 | 262.3333333333333 | 757.0 | Topological domain | Cytoplasmic |
Hgene | LARGE | chr22:33960833 | chr19:46032714 | ENST00000397394 | - | 6 | 15 | 1_10 | 262.3333333333333 | 757.0 | Topological domain | Cytoplasmic |
Hgene | LARGE | chr22:33960833 | chr19:46032714 | ENST00000402320 | - | 6 | 14 | 1_10 | 262.3333333333333 | 705.0 | Topological domain | Cytoplasmic |
Hgene | LARGE | chr22:33960834 | chr19:46032714 | ENST00000337431 | - | 7 | 15 | 1_10 | 262.3333333333333 | 705.0 | Topological domain | Cytoplasmic |
Hgene | LARGE | chr22:33960834 | chr19:46032714 | ENST00000354992 | - | 7 | 16 | 1_10 | 262.3333333333333 | 757.0 | Topological domain | Cytoplasmic |
Hgene | LARGE | chr22:33960834 | chr19:46032714 | ENST00000397394 | - | 6 | 15 | 1_10 | 262.3333333333333 | 757.0 | Topological domain | Cytoplasmic |
Hgene | LARGE | chr22:33960834 | chr19:46032714 | ENST00000402320 | - | 6 | 14 | 1_10 | 262.3333333333333 | 705.0 | Topological domain | Cytoplasmic |
Hgene | LARGE | chr22:33960833 | chr19:46032714 | ENST00000337431 | - | 7 | 15 | 11_31 | 262.3333333333333 | 705.0 | Transmembrane | Helical%3B Signal-anchor for type II membrane protein |
Hgene | LARGE | chr22:33960833 | chr19:46032714 | ENST00000354992 | - | 7 | 16 | 11_31 | 262.3333333333333 | 757.0 | Transmembrane | Helical%3B Signal-anchor for type II membrane protein |
Hgene | LARGE | chr22:33960833 | chr19:46032714 | ENST00000397394 | - | 6 | 15 | 11_31 | 262.3333333333333 | 757.0 | Transmembrane | Helical%3B Signal-anchor for type II membrane protein |
Hgene | LARGE | chr22:33960833 | chr19:46032714 | ENST00000402320 | - | 6 | 14 | 11_31 | 262.3333333333333 | 705.0 | Transmembrane | Helical%3B Signal-anchor for type II membrane protein |
Hgene | LARGE | chr22:33960834 | chr19:46032714 | ENST00000337431 | - | 7 | 15 | 11_31 | 262.3333333333333 | 705.0 | Transmembrane | Helical%3B Signal-anchor for type II membrane protein |
Hgene | LARGE | chr22:33960834 | chr19:46032714 | ENST00000354992 | - | 7 | 16 | 11_31 | 262.3333333333333 | 757.0 | Transmembrane | Helical%3B Signal-anchor for type II membrane protein |
Hgene | LARGE | chr22:33960834 | chr19:46032714 | ENST00000397394 | - | 6 | 15 | 11_31 | 262.3333333333333 | 757.0 | Transmembrane | Helical%3B Signal-anchor for type II membrane protein |
Hgene | LARGE | chr22:33960834 | chr19:46032714 | ENST00000402320 | - | 6 | 14 | 11_31 | 262.3333333333333 | 705.0 | Transmembrane | Helical%3B Signal-anchor for type II membrane protein |
Tgene | OPA3 | chr22:33960833 | chr19:46032714 | ENST00000263275 | 0 | 2 | 103_163 | 0 | 180.0 | Coiled coil | Ontology_term=ECO:0000255 | |
Tgene | OPA3 | chr22:33960833 | chr19:46032714 | ENST00000323060 | 0 | 2 | 103_163 | 47.333333333333336 | 181.0 | Coiled coil | Ontology_term=ECO:0000255 | |
Tgene | OPA3 | chr22:33960834 | chr19:46032714 | ENST00000263275 | 0 | 2 | 103_163 | 0 | 180.0 | Coiled coil | Ontology_term=ECO:0000255 | |
Tgene | OPA3 | chr22:33960834 | chr19:46032714 | ENST00000323060 | 0 | 2 | 103_163 | 47.333333333333336 | 181.0 | Coiled coil | Ontology_term=ECO:0000255 |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | LARGE | chr22:33960833 | chr19:46032714 | ENST00000337431 | - | 7 | 15 | 138_413 | 262.3333333333333 | 705.0 | Region | Xylosyltransferase activity |
Hgene | LARGE | chr22:33960833 | chr19:46032714 | ENST00000337431 | - | 7 | 15 | 414_756 | 262.3333333333333 | 705.0 | Region | Glucuronyltransferase activity |
Hgene | LARGE | chr22:33960833 | chr19:46032714 | ENST00000354992 | - | 7 | 16 | 138_413 | 262.3333333333333 | 757.0 | Region | Xylosyltransferase activity |
Hgene | LARGE | chr22:33960833 | chr19:46032714 | ENST00000354992 | - | 7 | 16 | 414_756 | 262.3333333333333 | 757.0 | Region | Glucuronyltransferase activity |
Hgene | LARGE | chr22:33960833 | chr19:46032714 | ENST00000397394 | - | 6 | 15 | 138_413 | 262.3333333333333 | 757.0 | Region | Xylosyltransferase activity |
Hgene | LARGE | chr22:33960833 | chr19:46032714 | ENST00000397394 | - | 6 | 15 | 414_756 | 262.3333333333333 | 757.0 | Region | Glucuronyltransferase activity |
Hgene | LARGE | chr22:33960833 | chr19:46032714 | ENST00000402320 | - | 6 | 14 | 138_413 | 262.3333333333333 | 705.0 | Region | Xylosyltransferase activity |
Hgene | LARGE | chr22:33960833 | chr19:46032714 | ENST00000402320 | - | 6 | 14 | 414_756 | 262.3333333333333 | 705.0 | Region | Glucuronyltransferase activity |
Hgene | LARGE | chr22:33960834 | chr19:46032714 | ENST00000337431 | - | 7 | 15 | 138_413 | 262.3333333333333 | 705.0 | Region | Xylosyltransferase activity |
Hgene | LARGE | chr22:33960834 | chr19:46032714 | ENST00000337431 | - | 7 | 15 | 414_756 | 262.3333333333333 | 705.0 | Region | Glucuronyltransferase activity |
Hgene | LARGE | chr22:33960834 | chr19:46032714 | ENST00000354992 | - | 7 | 16 | 138_413 | 262.3333333333333 | 757.0 | Region | Xylosyltransferase activity |
Hgene | LARGE | chr22:33960834 | chr19:46032714 | ENST00000354992 | - | 7 | 16 | 414_756 | 262.3333333333333 | 757.0 | Region | Glucuronyltransferase activity |
Hgene | LARGE | chr22:33960834 | chr19:46032714 | ENST00000397394 | - | 6 | 15 | 138_413 | 262.3333333333333 | 757.0 | Region | Xylosyltransferase activity |
Hgene | LARGE | chr22:33960834 | chr19:46032714 | ENST00000397394 | - | 6 | 15 | 414_756 | 262.3333333333333 | 757.0 | Region | Glucuronyltransferase activity |
Hgene | LARGE | chr22:33960834 | chr19:46032714 | ENST00000402320 | - | 6 | 14 | 138_413 | 262.3333333333333 | 705.0 | Region | Xylosyltransferase activity |
Hgene | LARGE | chr22:33960834 | chr19:46032714 | ENST00000402320 | - | 6 | 14 | 414_756 | 262.3333333333333 | 705.0 | Region | Glucuronyltransferase activity |
Hgene | LARGE | chr22:33960833 | chr19:46032714 | ENST00000337431 | - | 7 | 15 | 32_756 | 262.3333333333333 | 705.0 | Topological domain | Lumenal |
Hgene | LARGE | chr22:33960833 | chr19:46032714 | ENST00000354992 | - | 7 | 16 | 32_756 | 262.3333333333333 | 757.0 | Topological domain | Lumenal |
Hgene | LARGE | chr22:33960833 | chr19:46032714 | ENST00000397394 | - | 6 | 15 | 32_756 | 262.3333333333333 | 757.0 | Topological domain | Lumenal |
Hgene | LARGE | chr22:33960833 | chr19:46032714 | ENST00000402320 | - | 6 | 14 | 32_756 | 262.3333333333333 | 705.0 | Topological domain | Lumenal |
Hgene | LARGE | chr22:33960834 | chr19:46032714 | ENST00000337431 | - | 7 | 15 | 32_756 | 262.3333333333333 | 705.0 | Topological domain | Lumenal |
Hgene | LARGE | chr22:33960834 | chr19:46032714 | ENST00000354992 | - | 7 | 16 | 32_756 | 262.3333333333333 | 757.0 | Topological domain | Lumenal |
Hgene | LARGE | chr22:33960834 | chr19:46032714 | ENST00000397394 | - | 6 | 15 | 32_756 | 262.3333333333333 | 757.0 | Topological domain | Lumenal |
Hgene | LARGE | chr22:33960834 | chr19:46032714 | ENST00000402320 | - | 6 | 14 | 32_756 | 262.3333333333333 | 705.0 | Topological domain | Lumenal |
Top |
Fusion Gene Sequence for LARGE-OPA3 |
For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones. |
>In-frame_ENST00000452586_ENST00000323060_TCGA-36-1574_LARGE_chr22_33960833_-_OPA3_chr19_46032714_length(transcript)=2311nt_BP=281nt ATGAAAGGCAAATGACTTTTCAAACATTCTGCAGCTGGGATGACTTCTTTTTTTAATTTTTTAAAATATGTCAAGGTGATTTGTAATCCA CAGCAAAATGTTAATATGGTCTGAAGTTTCCTGGATCCCCAATAAACATTACTCTGGGATTTATGGTCTGATGAAGCTTGTCCTGACCAA GACTCTTCCTGCCAACCTGGAGAGAGTCATCGTCCTTGACACGGATATCACCTTTGCCACTGACATTGCAGAGCTGTGGGCTGTGTTCCA CAAGTTCAAAGTGTACCACTGGCTGGAGATGCGGACCAAAATGCGCATCATGGGTTTCAATGCCGCTGCCATCAAGCCGCTGAACGAGGG TGCAGCCGCCGAGCTGGGCGCGGAGCTGCTGGGCGAGGGCATCATCTTCATCACCGCCTGCAGCTGCCTGATGCTGGAGTATTGGCGCCA CCAGTTGCAGCAGCGCCGCAAGGAAAAGGAGCGACGTGTTGCCAGGGAGGCGCTGCGGGGCGAGGTGGGCCACTTGGGGCTGGCGCTCGA GGAGTTGCAGGCGCAGGTGCAGGCGACGTCGACGCAGCTCGCCCTGGAGGAGCTGCGCGCTCAGCTGCAGGAGGTGCGAGCCCACCTCTG CCTCCGAGACCCGCCGCCTGCACCCCCAGTTGCGCCGGCGTCCGAGAAATAGGAGGTCTCGGGGCCCTGGTCTTGGAGGTGACTGCTGTC TGGACTGCGAAGTCTCTGTCTTGGCCTATTCTCCGCACTGTCCCATCCTGGACCGGCCCAGCTGACACCACCCAGTCCTTCGGGGGCGCC GGAGAGATCCTGGGCTGGAGCTGATCGAACCTCCCTACTAACCTGCCCAGTGGTACCTTCCACTGGGACTCTCCGCCTCCTGCAGGTGGA ACGTTCCAAGAAGGACCCCGCCCTATCCCACCCCGCCCCTGCCAGCGCATTTGTTGAGCACTTTGGAAAGACAGCGTCTTTTATCAGACC CCACCTCCCTACCGCTAGGTAGGCCAGCAGGACGTCCACCTCTTTTGGCAAAACAAAATTCTGCACCCGGATTTAGCCACCTCTCATTCT GTCACCCGCACCCTCACTCACCTGAGTGGACCCTTCCCCTAGGACGCTCATCCTTTGCACCGAACACCACCTACCTCCTCCTCATTGGTA CAGACCATTGTAAAGATGCACAAAGTTCCTACGGACTTCCCGACCCGCCCCCTTCCATCTACCTCAGTCTTAGGGGGAAAGGTGGGGGTG AATCCTGGACTGCGTTAGCTCCAATGAGTCACCACCCTGCGGCTCCTGACCTTAATCCATCTTAGTACCTGTCATTGACATCCTCCCCTC CCTGAGTGGATCGATCCAACATAACCCCCCTCTTCTTCCACCTATGGCGCACCCCACTGGCATGGCTATGCTGGGTCTTCCAGGGAAACG CCTCCCAGCCCGGCATTCTGTGGTCTGTTCCAGCAGGACGTGGCCTTTTGGGAGGAAAAACCGGTCTTGACCAGGGCTAGTCCATTCTGG CTTTCAGGCTCAGTCACTTGGTCACCAGTCCCCAGTCCTGGACCTACTGCTACTGTCCTTTTATCCGGTCCTCCCTCGCTGTCCTCTTCA GTTGCCTTTGCTAGGGACCGGCCTGTCCCTTTACTACCTAAGTCATCGTCAGTTCGCCCAACTTCCCTCCAAATCTGCCCCTCACGGTAC GCAGGGATCGCCCTTCCTTCCTGCCTTTGGACTGGTCCAGGTCCTCCTCCGCCCTCCTTCACGCAAAGGCCTCCTCCAGGGGGACTACCT GTCCCTCAGCCCAGAGGTCCCCCTGTCCAAGCGGGGTATTCCACCAGGCCATATGACCTACCCACCCGACAACTGAAGGGGGCGTGGATG AGCTCTGTGACTCTGAATGCTACTTTATAAATCGACTGTCAGCGTTTTCTAATTAAAGGAGCTCTGGGGTAAAGATCTTAAGAACGTGTC TGAGAACCATAATGTGCGTCTGCAAAATGTCATTGAAATTAGGAAAGAAGGCCGGACACAGTGGCTCACGCCTGTAATTCCAGCACTTTA AGAGGCCAAAGCAGGAGGACTGCTGGAGGCCAGGAGTTAGAGACCAACCTAGGCAACACAGCAAGACCGCATCTCTACGAAAAATGAAAA TATTAGCTAGGCGTCATACCAAACGCCTGTAGTTCCAGCTACTTGGGAGGCTGAGGCAGGAGGATCCCTTGAGCCCAGGAGTTCAAGGCT >In-frame_ENST00000452586_ENST00000323060_TCGA-36-1574_LARGE_chr22_33960833_-_OPA3_chr19_46032714_length(amino acids)=194AA_start in transcript=97_stop in transcript=681 MLIWSEVSWIPNKHYSGIYGLMKLVLTKTLPANLERVIVLDTDITFATDIAELWAVFHKFKVYHWLEMRTKMRIMGFNAAAIKPLNEGAA AELGAELLGEGIIFITACSCLMLEYWRHQLQQRRKEKERRVAREALRGEVGHLGLALEELQAQVQATSTQLALEELRAQLQEVRAHLCLR -------------------------------------------------------------- >In-frame_ENST00000452586_ENST00000323060_TCGA-36-1574-01A_LARGE_chr22_33960834_-_OPA3_chr19_46032714_length(transcript)=2311nt_BP=281nt ATGAAAGGCAAATGACTTTTCAAACATTCTGCAGCTGGGATGACTTCTTTTTTTAATTTTTTAAAATATGTCAAGGTGATTTGTAATCCA CAGCAAAATGTTAATATGGTCTGAAGTTTCCTGGATCCCCAATAAACATTACTCTGGGATTTATGGTCTGATGAAGCTTGTCCTGACCAA GACTCTTCCTGCCAACCTGGAGAGAGTCATCGTCCTTGACACGGATATCACCTTTGCCACTGACATTGCAGAGCTGTGGGCTGTGTTCCA CAAGTTCAAAGTGTACCACTGGCTGGAGATGCGGACCAAAATGCGCATCATGGGTTTCAATGCCGCTGCCATCAAGCCGCTGAACGAGGG TGCAGCCGCCGAGCTGGGCGCGGAGCTGCTGGGCGAGGGCATCATCTTCATCACCGCCTGCAGCTGCCTGATGCTGGAGTATTGGCGCCA CCAGTTGCAGCAGCGCCGCAAGGAAAAGGAGCGACGTGTTGCCAGGGAGGCGCTGCGGGGCGAGGTGGGCCACTTGGGGCTGGCGCTCGA GGAGTTGCAGGCGCAGGTGCAGGCGACGTCGACGCAGCTCGCCCTGGAGGAGCTGCGCGCTCAGCTGCAGGAGGTGCGAGCCCACCTCTG CCTCCGAGACCCGCCGCCTGCACCCCCAGTTGCGCCGGCGTCCGAGAAATAGGAGGTCTCGGGGCCCTGGTCTTGGAGGTGACTGCTGTC TGGACTGCGAAGTCTCTGTCTTGGCCTATTCTCCGCACTGTCCCATCCTGGACCGGCCCAGCTGACACCACCCAGTCCTTCGGGGGCGCC GGAGAGATCCTGGGCTGGAGCTGATCGAACCTCCCTACTAACCTGCCCAGTGGTACCTTCCACTGGGACTCTCCGCCTCCTGCAGGTGGA ACGTTCCAAGAAGGACCCCGCCCTATCCCACCCCGCCCCTGCCAGCGCATTTGTTGAGCACTTTGGAAAGACAGCGTCTTTTATCAGACC CCACCTCCCTACCGCTAGGTAGGCCAGCAGGACGTCCACCTCTTTTGGCAAAACAAAATTCTGCACCCGGATTTAGCCACCTCTCATTCT GTCACCCGCACCCTCACTCACCTGAGTGGACCCTTCCCCTAGGACGCTCATCCTTTGCACCGAACACCACCTACCTCCTCCTCATTGGTA CAGACCATTGTAAAGATGCACAAAGTTCCTACGGACTTCCCGACCCGCCCCCTTCCATCTACCTCAGTCTTAGGGGGAAAGGTGGGGGTG AATCCTGGACTGCGTTAGCTCCAATGAGTCACCACCCTGCGGCTCCTGACCTTAATCCATCTTAGTACCTGTCATTGACATCCTCCCCTC CCTGAGTGGATCGATCCAACATAACCCCCCTCTTCTTCCACCTATGGCGCACCCCACTGGCATGGCTATGCTGGGTCTTCCAGGGAAACG CCTCCCAGCCCGGCATTCTGTGGTCTGTTCCAGCAGGACGTGGCCTTTTGGGAGGAAAAACCGGTCTTGACCAGGGCTAGTCCATTCTGG CTTTCAGGCTCAGTCACTTGGTCACCAGTCCCCAGTCCTGGACCTACTGCTACTGTCCTTTTATCCGGTCCTCCCTCGCTGTCCTCTTCA GTTGCCTTTGCTAGGGACCGGCCTGTCCCTTTACTACCTAAGTCATCGTCAGTTCGCCCAACTTCCCTCCAAATCTGCCCCTCACGGTAC GCAGGGATCGCCCTTCCTTCCTGCCTTTGGACTGGTCCAGGTCCTCCTCCGCCCTCCTTCACGCAAAGGCCTCCTCCAGGGGGACTACCT GTCCCTCAGCCCAGAGGTCCCCCTGTCCAAGCGGGGTATTCCACCAGGCCATATGACCTACCCACCCGACAACTGAAGGGGGCGTGGATG AGCTCTGTGACTCTGAATGCTACTTTATAAATCGACTGTCAGCGTTTTCTAATTAAAGGAGCTCTGGGGTAAAGATCTTAAGAACGTGTC TGAGAACCATAATGTGCGTCTGCAAAATGTCATTGAAATTAGGAAAGAAGGCCGGACACAGTGGCTCACGCCTGTAATTCCAGCACTTTA AGAGGCCAAAGCAGGAGGACTGCTGGAGGCCAGGAGTTAGAGACCAACCTAGGCAACACAGCAAGACCGCATCTCTACGAAAAATGAAAA TATTAGCTAGGCGTCATACCAAACGCCTGTAGTTCCAGCTACTTGGGAGGCTGAGGCAGGAGGATCCCTTGAGCCCAGGAGTTCAAGGCT >In-frame_ENST00000452586_ENST00000323060_TCGA-36-1574-01A_LARGE_chr22_33960834_-_OPA3_chr19_46032714_length(amino acids)=194AA_start in transcript=97_stop in transcript=681 MLIWSEVSWIPNKHYSGIYGLMKLVLTKTLPANLERVIVLDTDITFATDIAELWAVFHKFKVYHWLEMRTKMRIMGFNAAAIKPLNEGAA AELGAELLGEGIIFITACSCLMLEYWRHQLQQRRKEKERRVAREALRGEVGHLGLALEELQAQVQATSTQLALEELRAQLQEVRAHLCLR -------------------------------------------------------------- |
Top |
Fusion Gene PPI Analysis for LARGE-OPA3 |
Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in |
Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
Hgene | Hgene's interactors | Tgene | Tgene's interactors |
- Retained PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
- Lost PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
- Retained PPIs, but lost function due to frame-shift fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
Top |
Related Drugs for LARGE-OPA3 |
Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.8 2021-05-08) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
Top |
Related Diseases for LARGE-OPA3 |
Diseases associated with fusion partners. (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Tgene | OPA3 | C1833809 | OPTIC ATROPHY AND CATARACT, AUTOSOMAL DOMINANT | 3 | CTD_human;GENOMICS_ENGLAND;ORPHANET;UNIPROT |
Tgene | OPA3 | C0574084 | 3-Methylglutaconic aciduria type 3 | 2 | CTD_human;GENOMICS_ENGLAND |
Tgene | OPA3 | C0338508 | Optic Atrophy 1 | 1 | GENOMICS_ENGLAND |