|
Fusion Gene Summary | |
Fusion Gene ORF analysis | |
Fusion Genomic Features | |
Fusion Protein Features | |
Fusion Gene Sequence | |
Fusion Gene PPI analysis | |
Related Drugs | |
Related Diseases |
Fusion gene:LARS2-TBL1XR1 (FusionGDB2 ID:43933) |
Fusion Gene Summary for LARS2-TBL1XR1 |
Fusion gene summary |
Fusion gene information | Fusion gene name: LARS2-TBL1XR1 | Fusion gene ID: 43933 | Hgene | Tgene | Gene symbol | LARS2 | TBL1XR1 | Gene ID | 23395 | 79718 |
Gene name | leucyl-tRNA synthetase 2, mitochondrial | TBL1X receptor 1 | |
Synonyms | HLASA|LEURS|PRLTS4|mtLeuRS | C21|DC42|IRA1|MRD41|TBLR1 | |
Cytomap | 3p21.31 | 3q26.32 | |
Type of gene | protein-coding | protein-coding | |
Description | probable leucine--tRNA ligase, mitochondrialleucine tRNA ligase 2, mitochondrialleucine tRNA ligase 2, mitocondrialleucine translaseprobable leucyl-tRNA synthetase, mitochondrial | F-box-like/WD repeat-containing protein TBL1XR1TBL1-related protein 1nuclear receptor co-repressor/HDAC3 complex subunitnuclear receptor corepressor/HDAC3 complex subunit TBLR1transducin beta like 1 X-linked receptor 1 | |
Modification date | 20200313 | 20200313 | |
UniProtAcc | Q15031 | . | |
Ensembl transtripts involved in fusion gene | ENST00000265537, ENST00000415258, ENST00000414984, ENST00000467936, | ENST00000430069, ENST00000457928, | |
Fusion gene scores | * DoF score | 5 X 4 X 4=80 | 11 X 11 X 5=605 |
# samples | 5 | 13 | |
** MAII score | log2(5/80*10)=-0.678071905112638 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(13/605*10)=-2.2184235191335 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
Context | PubMed: LARS2 [Title/Abstract] AND TBL1XR1 [Title/Abstract] AND fusion [Title/Abstract] | ||
Most frequent breakpoint | LARS2(45461221)-TBL1XR1(176769514), # samples:2 | ||
Anticipated loss of major functional domain due to fusion event. |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
Partner | Gene | GO ID | GO term | PubMed ID |
Hgene | LARS2 | GO:0006429 | leucyl-tRNA aminoacylation | 10684970 |
Tgene | TBL1XR1 | GO:0000122 | negative regulation of transcription by RNA polymerase II | 12628926 |
Tgene | TBL1XR1 | GO:0045893 | positive regulation of transcription, DNA-templated | 18193033 |
Tgene | TBL1XR1 | GO:0045944 | positive regulation of transcription by RNA polymerase II | 18193033 |
Fusion gene breakpoints across LARS2 (5'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
Fusion gene breakpoints across TBL1XR1 (3'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Source | Disease | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
ChimerDB4 | DLBC | TCGA-FA-A4XK-01A | LARS2 | chr3 | 45461221 | + | TBL1XR1 | chr3 | 176769514 | - |
ChimerDB4 | DLBC | TCGA-FA-A4XK-01A | LARS2 | chr3 | 45461221 | - | TBL1XR1 | chr3 | 176769514 | - |
Top |
Fusion Gene ORF analysis for LARS2-TBL1XR1 |
Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
In-frame | ENST00000265537 | ENST00000430069 | LARS2 | chr3 | 45461221 | + | TBL1XR1 | chr3 | 176769514 | - |
In-frame | ENST00000265537 | ENST00000457928 | LARS2 | chr3 | 45461221 | + | TBL1XR1 | chr3 | 176769514 | - |
In-frame | ENST00000415258 | ENST00000430069 | LARS2 | chr3 | 45461221 | + | TBL1XR1 | chr3 | 176769514 | - |
In-frame | ENST00000415258 | ENST00000457928 | LARS2 | chr3 | 45461221 | + | TBL1XR1 | chr3 | 176769514 | - |
In-frame | ENST00000414984 | ENST00000430069 | LARS2 | chr3 | 45461221 | + | TBL1XR1 | chr3 | 176769514 | - |
In-frame | ENST00000414984 | ENST00000457928 | LARS2 | chr3 | 45461221 | + | TBL1XR1 | chr3 | 176769514 | - |
intron-3CDS | ENST00000467936 | ENST00000430069 | LARS2 | chr3 | 45461221 | + | TBL1XR1 | chr3 | 176769514 | - |
intron-3CDS | ENST00000467936 | ENST00000457928 | LARS2 | chr3 | 45461221 | + | TBL1XR1 | chr3 | 176769514 | - |
ORFfinder result based on the fusion transcript sequence of in-frame fusion genes. |
Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | Seq length (transcript) | BP loci (transcript) | Predicted start (transcript) | Predicted stop (transcript) | Seq length (amino acids) |
ENST00000265537 | LARS2 | chr3 | 45461221 | + | ENST00000430069 | TBL1XR1 | chr3 | 176769514 | - | 8262 | 778 | 262 | 2118 | 618 |
ENST00000265537 | LARS2 | chr3 | 45461221 | + | ENST00000457928 | TBL1XR1 | chr3 | 176769514 | - | 4297 | 778 | 262 | 2118 | 618 |
ENST00000415258 | LARS2 | chr3 | 45461221 | + | ENST00000430069 | TBL1XR1 | chr3 | 176769514 | - | 8141 | 657 | 141 | 1997 | 618 |
ENST00000415258 | LARS2 | chr3 | 45461221 | + | ENST00000457928 | TBL1XR1 | chr3 | 176769514 | - | 4176 | 657 | 141 | 1997 | 618 |
ENST00000414984 | LARS2 | chr3 | 45461221 | + | ENST00000430069 | TBL1XR1 | chr3 | 176769514 | - | 8009 | 525 | 138 | 1865 | 575 |
ENST00000414984 | LARS2 | chr3 | 45461221 | + | ENST00000457928 | TBL1XR1 | chr3 | 176769514 | - | 4044 | 525 | 138 | 1865 | 575 |
DeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated. |
Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | No-coding score | Coding score |
ENST00000265537 | ENST00000430069 | LARS2 | chr3 | 45461221 | + | TBL1XR1 | chr3 | 176769514 | - | 0.000269563 | 0.9997304 |
ENST00000265537 | ENST00000457928 | LARS2 | chr3 | 45461221 | + | TBL1XR1 | chr3 | 176769514 | - | 0.000515645 | 0.9994843 |
ENST00000415258 | ENST00000430069 | LARS2 | chr3 | 45461221 | + | TBL1XR1 | chr3 | 176769514 | - | 0.00027499 | 0.99972504 |
ENST00000415258 | ENST00000457928 | LARS2 | chr3 | 45461221 | + | TBL1XR1 | chr3 | 176769514 | - | 0.000550892 | 0.9994491 |
ENST00000414984 | ENST00000430069 | LARS2 | chr3 | 45461221 | + | TBL1XR1 | chr3 | 176769514 | - | 0.000242705 | 0.99975735 |
ENST00000414984 | ENST00000457928 | LARS2 | chr3 | 45461221 | + | TBL1XR1 | chr3 | 176769514 | - | 0.000506567 | 0.99949336 |
Top |
Fusion Genomic Features for LARS2-TBL1XR1 |
FusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints. |
Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | 1-p | p (fusion gene breakpoint) |
Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page. |
Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page. |
Top |
Fusion Protein Features for LARS2-TBL1XR1 |
Go to FGviewer for the breakpoints of chr3:45461221-chr3:176769514 - FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels. |
Main function of each fusion partner protein. (from UniProt) |
Hgene | Tgene |
LARS2 | . |
FUNCTION: Might normally function as a transcriptional repressor. EWS-fusion-proteins (EFPS) may play a role in the tumorigenic process. They may disturb gene expression by mimicking, or interfering with the normal function of CTD-POLII within the transcription initiation complex. They may also contribute to an aberrant activation of the fusion protein target genes. |
Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | LARS2 | chr3:45461221 | chr3:176769514 | ENST00000265537 | + | 6 | 22 | 92_102 | 172.0 | 904.0 | Motif | Note='HIGH' region |
Hgene | LARS2 | chr3:45461221 | chr3:176769514 | ENST00000415258 | + | 5 | 21 | 92_102 | 172.0 | 904.0 | Motif | Note='HIGH' region |
Tgene | TBL1XR1 | chr3:45461221 | chr3:176769514 | ENST00000430069 | 3 | 16 | 108_118 | 68.0 | 515.0 | Compositional bias | Note=Poly-Ala | |
Tgene | TBL1XR1 | chr3:45461221 | chr3:176769514 | ENST00000457928 | 3 | 16 | 108_118 | 68.0 | 515.0 | Compositional bias | Note=Poly-Ala | |
Tgene | TBL1XR1 | chr3:45461221 | chr3:176769514 | ENST00000430069 | 3 | 16 | 167_206 | 68.0 | 515.0 | Repeat | Note=WD 1 | |
Tgene | TBL1XR1 | chr3:45461221 | chr3:176769514 | ENST00000430069 | 3 | 16 | 223_262 | 68.0 | 515.0 | Repeat | Note=WD 2 | |
Tgene | TBL1XR1 | chr3:45461221 | chr3:176769514 | ENST00000430069 | 3 | 16 | 264_303 | 68.0 | 515.0 | Repeat | Note=WD 3 | |
Tgene | TBL1XR1 | chr3:45461221 | chr3:176769514 | ENST00000430069 | 3 | 16 | 306_344 | 68.0 | 515.0 | Repeat | Note=WD 4 | |
Tgene | TBL1XR1 | chr3:45461221 | chr3:176769514 | ENST00000430069 | 3 | 16 | 347_386 | 68.0 | 515.0 | Repeat | Note=WD 5 | |
Tgene | TBL1XR1 | chr3:45461221 | chr3:176769514 | ENST00000430069 | 3 | 16 | 389_437 | 68.0 | 515.0 | Repeat | Note=WD 6 | |
Tgene | TBL1XR1 | chr3:45461221 | chr3:176769514 | ENST00000430069 | 3 | 16 | 440_479 | 68.0 | 515.0 | Repeat | Note=WD 7 | |
Tgene | TBL1XR1 | chr3:45461221 | chr3:176769514 | ENST00000430069 | 3 | 16 | 481_513 | 68.0 | 515.0 | Repeat | Note=WD 8 | |
Tgene | TBL1XR1 | chr3:45461221 | chr3:176769514 | ENST00000457928 | 3 | 16 | 167_206 | 68.0 | 515.0 | Repeat | Note=WD 1 | |
Tgene | TBL1XR1 | chr3:45461221 | chr3:176769514 | ENST00000457928 | 3 | 16 | 223_262 | 68.0 | 515.0 | Repeat | Note=WD 2 | |
Tgene | TBL1XR1 | chr3:45461221 | chr3:176769514 | ENST00000457928 | 3 | 16 | 264_303 | 68.0 | 515.0 | Repeat | Note=WD 3 | |
Tgene | TBL1XR1 | chr3:45461221 | chr3:176769514 | ENST00000457928 | 3 | 16 | 306_344 | 68.0 | 515.0 | Repeat | Note=WD 4 | |
Tgene | TBL1XR1 | chr3:45461221 | chr3:176769514 | ENST00000457928 | 3 | 16 | 347_386 | 68.0 | 515.0 | Repeat | Note=WD 5 | |
Tgene | TBL1XR1 | chr3:45461221 | chr3:176769514 | ENST00000457928 | 3 | 16 | 389_437 | 68.0 | 515.0 | Repeat | Note=WD 6 | |
Tgene | TBL1XR1 | chr3:45461221 | chr3:176769514 | ENST00000457928 | 3 | 16 | 440_479 | 68.0 | 515.0 | Repeat | Note=WD 7 | |
Tgene | TBL1XR1 | chr3:45461221 | chr3:176769514 | ENST00000457928 | 3 | 16 | 481_513 | 68.0 | 515.0 | Repeat | Note=WD 8 |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | LARS2 | chr3:45461221 | chr3:176769514 | ENST00000265537 | + | 6 | 22 | 639_643 | 172.0 | 904.0 | Motif | Note='KMSKS' region |
Hgene | LARS2 | chr3:45461221 | chr3:176769514 | ENST00000415258 | + | 5 | 21 | 639_643 | 172.0 | 904.0 | Motif | Note='KMSKS' region |
Tgene | TBL1XR1 | chr3:45461221 | chr3:176769514 | ENST00000430069 | 3 | 16 | 41_86 | 68.0 | 515.0 | Domain | Note=F-box-like | |
Tgene | TBL1XR1 | chr3:45461221 | chr3:176769514 | ENST00000430069 | 3 | 16 | 4_36 | 68.0 | 515.0 | Domain | LisH | |
Tgene | TBL1XR1 | chr3:45461221 | chr3:176769514 | ENST00000457928 | 3 | 16 | 41_86 | 68.0 | 515.0 | Domain | Note=F-box-like | |
Tgene | TBL1XR1 | chr3:45461221 | chr3:176769514 | ENST00000457928 | 3 | 16 | 4_36 | 68.0 | 515.0 | Domain | LisH |
Top |
Fusion Gene Sequence for LARS2-TBL1XR1 |
For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones. |
>In-frame_ENST00000265537_ENST00000430069_TCGA-FA-A4XK-01A_LARS2_chr3_45461221_+_TBL1XR1_chr3_176769514_length(transcript)=8262nt_BP=778nt GTTGCTCTCCTCCCTTCCCCGGTCCCGCCCCCGTCTGTCTGTGTCGACTGCGGACGCTATCGATAAAGTTGCTGTTTTGACAACATGGCG GCGCCCATGGTCCGTGGCCCGGCAGTGCTCGCCTAAAGGTGGAGAACGAGGAGTAGAGGAGCCGCAGGCCAGAGCCTGTGAGCAGATCCA GACCTACAGATAAAAAACATTATTTAATCTATCTGGGATTTACTCCGGCTTATGATTTGAGGGCCTTCTCACCTTCTGAAGAATGGCTTC TGTTTGGCAGAGATTGGGTTTTTATGCCTCTCTTCTGAAAAGACAGCTAAATGGTGGGCCAGATGTCATCAAGTGGGAAAGGAGAGTAAT TCCCGGATGTACCAGAAGCATCTACAGTGCCACGGGAAAGTGGACAAAAGAGTATACATTGCAGACAAGAAAGGATGTTGAGAAATGGTG GCATCAACGAATAAAAGAACAGGCCTCCAAAATTTCAGAAGCTGATAAATCGAAGCCAAAATTTTACGTGCTTTCCATGTTCCCTTATCC TTCTGGTAAGCTGCACATGGGCCATGTGCGTGTCTACACCATCAGCGACACCATAGCACGGTTCCAGAAGATGAGAGGGATGCAGGTCAT CAACCCCATGGGATGGGATGCTTTTGGATTGCCTGCTGAAAATGCCGCAGTCGAGAGGAATCTACATCCACAAAGTTGGACACAAAGTAA TATTAAACACATGAGGAAACAGCTTGATCGTCTGGGCCTGTGTTTCAGCTGGGATAGGGATGGTACCTTGTTTGATGGTCGACCAATAGA GTCTCTGTCCCTGATAGATGCCGTAATGCCTGATGTAGTACAAACAAGACAACAAGCTTATAGAGATAAGCTTGCACAGCAACAGGCAGC AGCTGCTGCAGCTGCCGCAGCTGCAGCCAGCCAACAAGGATCTGCAAAAAATGGAGAAAACACAGCAAATGGGGAGGAGAATGGAGCACA TACTATAGCAAATAATCATACTGATATGATGGAAGTGGATGGGGATGTTGAAATCCCTCCTAATAAAGCTGTTGTGTTGCGGGGCCATGA ATCTGAAGTTTTTATCTGTGCCTGGAACCCTGTTAGTGATCTCCTAGCATCAGGGTCTGGAGACTCAACAGCAAGAATATGGAATCTTAG TGAGAACAGCACCAGTGGCTCTACACAGTTAGTACTTAGACATTGTATACGAGAAGGAGGGCAAGATGTTCCAAGCAACAAGGATGTCAC ATCTCTAGATTGGAATAGTGAAGGTACACTTCTAGCAACTGGTTCCTATGATGGGTTTGCCAGAATATGGACTAAAGATGGTAACCTTGC TAGCACCTTAGGGCAGCATAAAGGCCCTATATTTGCATTAAAATGGAATAAGAAAGGAAATTTCATCCTAAGTGCTGGAGTAGACAAGAC TACAATTATTTGGGACGCACATACTGGTGAAGCCAAGCAACAGTTTCCTTTTCATTCAGCACCAGCATTGGATGTTGATTGGCAGAGCAA CAACACCTTTGCTTCTTGTAGTACAGATATGTGCATTCATGTCTGTAAATTAGGACAAGACAGACCTATTAAAACATTCCAAGGACATAC GAATGAAGTAAATGCTATCAAATGGGACCCAACTGGCAATCTCTTGGCCTCCTGTTCTGACGACATGACTTTAAAGATATGGAGTATGAA ACAAGACAATTGTGTCCATGATTTGCAAGCACATAATAAAGAAATTTATACTATCAAATGGAGTCCAACAGGACCAGGGACTAATAATCC AAATGCCAACCTTATGTTAGCAAGTGCATCCTTTGATTCTACTGTTAGGTTATGGGATGTAGACCGAGGGATATGCATCCATACCTTGAC AAAACACCAAGAGCCTGTGTACAGTGTAGCTTTCAGTCCTGATGGCAGGTATCTGGCAAGTGGTTCTTTTGACAAATGTGTACACATCTG GAACACGCAGACAGGTGCTCTAGTTCACAGCTATAGGGGAACAGGTGGAATATTTGAAGTTTGCTGGAATGCAGCAGGAGACAAAGTTGG AGCCAGTGCATCAGATGGTTCAGTTTGTGTATTAGACCTTCGGAAATAGCGCTACTAGTTGGAAGCCATGGACCGACTATGAATGTGTAC ATAGCCAAAATGACTGTCCCTGACCCATGTACTGCTATAGTCCCACTTGAACCATGGCCAGTCCACTACAGCCAAATCTAAAAGAAATAT ATACATACAGTGTATATAAACAAAATTGCACCCTGAAGATGACAGAGTTTTGTCACAGCTTGTGAATTCTGTTCACCAAGTGCTGGAATC TAATCTGCTGTGCCCCTAAAATAGCATTTAGAAGTTTTGGATATGAAAAACAGAAGAGAGAAAAATATACATTATAAAAGCAGAACATAC ATGTACCAGTTTTTGGATACTAAATGACAGCCTTGTTTCTCCCCTTTGAATCAGCAGACACCATGGATTATATTCTTTTTTTCCCTTCAG TAGTGAGCAGTTTGTATGTACAGAGAAAATGGACTTACAAAAACTTGCAGCAGTAGTTTGTTCTTGCTTTAAAATTTCGTTTTTGGTTTA GATTATGGATGCATGAAGTAAGGGAGTGAATCAGTTTCTTGTTTATATTTTTTTCACCTTTTAAACAAAAAATTCTTTAAAATATTTTAA TGCATTCTTTTGAAGAGGTAGATGTTTGGTACATTTTATGGCTCCCAGAGCATATATTCAGTTGGTGCATGTTGTGGAAGGGGGAATTGG AAATTAAATGAAAACCTATGACTTTGGTCATGTCAATCTGTAAGACACATCAGTAAAAGGGTATTATGCTCTGTTGGTTTTGTTTTTTTG TTTTGCTTTTTTTTTTTTTTTTTCTTTTTTGTTTTTTGGTGATGTGGCTTAAATGCAATAGTTTCTTTTTTGGGACATATTTCTGCCAAT TAAAGACTAGAAGGGCACAACTTTTTTTTTAATTACCATAGAGAAGATACATTAAAAAAAATCTTCTGATGTTTTGTAGCCATAACTAAA TTATGGTAAAAATGTGCACTATTGTGAAAAGGAGCAACGTAGTTTTGGGTTTTTTGTTGTTTGTTTGTTTTGCTTTGTTTTTTAAGAGAT TAAAATGTTTCTGGATAAGGATTAGCTTCTCGAAGTGTCCATCATTCTGTGTAGAAGCTTAAATATGTAATGTAACCAAACTCCAGTATT AAAAATCTCTCATGTTGTTTTCTTTATACAAAGCAAGATAACGGCATATAACACTGCCATTACATGGCAAAATGTTTGCTACCTTAGTTT AAAAAACAATCTCAAACAAAAGACTTGCTTCAAGGTGTTTTTAAATAGCAGTGATTCAGAATTTTTTTTAATGAAAGTATAATTGCACTA ACCTTCTTCCTGCTGCTCTGATTCTGCATTTGTGGTACTTGTGACTACGTTTTTTCAAATATAGATAGATTTAAGCTGCTAATTTTTTTT TTTTTAGTAATCACTACTATATCATGTCTTTTACTCTGTTTATAATATCAAGTATTTTCTTAAAGATATAGATATTAAACCTTGTGCTCA TGCAACTTAGAGTAACATATACAGACAAATGATTGCATGAGGCCATGTTTATATGTGTGACTAATAAGGCTTGTCATGATTAACATAATC CAGGTATGTCATTTCTGAAGAGAATAGTCATCAAATTTATATCTCGAAGATTTTAATTAAGGAATTGCTTATTGTTGAGCTTAGCAAATT AATAACACTATTTCTGTCACTAATTATTTTGAGGCCTTTTAGTACTAAAATTTTAACCTGTGTTCTAAGTAGAAACTGATTTAACCCAAG TAATGCAGCTTTGATTGATTTCAGCATTCGTTGCTTTGCTATTTTTACAAAACAGCATTGATTGAAGCAAGTCTTGGTTTTACTAAGGTA GGGTAGCATTTGCTATTGGTAAAGAGAATAAATACACTTAATTTCACAATACATTGTTATATGTACCCCAGTTGTTGTTAGTGGGGACTA TGATACTGTAATAATATTTTTAAAAATTTACATCAAGAGAGGCAGTCATTCACGATGGTTTTGTGCCAGCTCTTTTTAGGGTTTTGGATC ACATTAGAGATATTTAGAACATATTACCCTGTGACTTACGTAGGAAACCTAATATGCTGAGTATCTGGCACTTGAATTCCTGCTTTTATT GCTGGAGGTCCACATCTGTGGTTGACCTCTGTTATTGTTTAAAAAAAATAAATAAAAATTAAAAAAATCTGTGCAATAATTTTAAAATGT GCTCCCAGGAATAGACACAAATGTTTTGAGTATCTTTTAAGCTGCATTTTCCTTTAGTGATGCATTTGTCAATTGCACTGAATTTAAATC TGAAAGTCAGAGGTGATTATTGATAGTACTTTTGTATTTTGATATGGACAGTTTATTCATTTGCATACAGTTATTGACTTTTTCCCAGCT GATTAAAAGATAGTCAAGAAATTCTGCAATATAGCTGCCAAAATAGACAGCTACATTTTTATGATATTGTCATCTTTTCTGTTTTTTTTT TCTTTTTTTTCTTTAGCTATTTTACTTAAGCATAATAGCCACAATAGGACATATAAAAGATTATAAATACAGAGCTTTATTATCCTGACG TCTTGGGTCTTTTAAGTATATACTTTTCTGAAAGGTATCCATTTTGTAGGCTTGGGTTCTTCATGAGCATACGATTGTTTATTTTTGCTG CTGTTCTCAACATCATCATTGCCTGCTGATGTGCCACGATGCTGCTCCAATAGACAGCAATAAGATTGTCTCTAATTTGAGCAGTAACAT GATTGCAAGAGACCAAGTTTCACAGCTTGTAAAGTTCTGTATTTGGGATTCTTGCTTATTTTTCCGCCTGTGTTTTTCTGAGAACTTATT CCTGATGATCAATTGAATCCAGTAGTTTTTCTATGCTATTTGTTGTTGTATAAGCTACTGTAAGAAACTTATCATAAGGAAAAATAGAAA GGAAAACTTGAATCAATACTCATTGATTAAAATGGAATAAAGAAAGAGCAGCTGCCACTTTTAAACAACATAAAGGAATATCTTTTTTTG TCTCCGTGTAGGAAATCCCATAAGTTCTTATATTTGTTCCAGTTCCCATTTCCTGCCATTGACCAGATAACATCATTGACTTTCAAATGA CTTTTAGAAGTGATAACTCTTAATTTCCTAATAGATACTAGATTGTATTGAATTCTGTTTTAATTATTCTCTAGGTAAGTATGTTTTAGG ATTAAATACCTTTTACAGATACTGAAAGTGCCTCCTTTTGTGGTGTAAAAAACAAATTATGGTGCAAAAAGTAATCACTAGATTGAAATA CATGAAGGTTTTTTGCTTTTTGACATACGAAAATGTCAAGAGAAAGGCCAAAGATTTGTACTTTTTCACTTACAAAGCACTCCTTTTTCC CTTAAACTTCTTTCTGTCAAATTAGATTTAATGAGAGAGTACTATTTTTAAGGAGCTATCTGTTTATGTAGAATGATTTTGTTAAGAGTA ATGTAAACTATTATTGAGTAGAGGCCTAAAGAGGACTGTGCATTTTTGCTATTTAAAGGAATCACAAATGATCATACTTAAGTGAGCAAA AATGACAAGTTTTACTAGCTAAGTAGAGAAATAAATCTCAAATGCAGCGCTACAATTTTCATTATCTTAAGTACATTGTACATTTCTACA GAACCTGTGATTATTCTCGCATGATAAGGATGGTACTTGCATATGGTGAATTACTACTGTTGACAGTTTCCGCAGAAATCCTATTTCAGT GGACCAACATTGTGGCATGGCAGCAAATGCCAACATTTTGTGGAATAGCAGCAAATCTACAAGAGACCCTGGTTGGTTTTTCGTTTTGTT TTCTTTGTTTTTTCCCCCTTCTCCTGAATCAGCAGGGATGGAAGGAGGGTAGGGAAGTTATGAATTACTCCTTCCAGTAGTAGCTCTGAA GTGTCACATTTAATATCAGTTTTTTTTAAACATGATTCTAGTTAAATGTAGAAGAGAGAAGAAAGAGGAAGTGTTCACTTTTTTAATACA CTGATTTAGAAATTTGATGTCTTATATCAGTAGTTCTGAGGTATTGATAGCTTGCTTTATTTCTGCCTTTACGTTGACAGTGTTGAAGCA GGGTGAATAACTAGGGCATATATTTTTTTTTTTTTTGTAAGCTGTTTCATGATGTTTTCTTTGGAATTTCCGGATAAGTTCAGGAAAACA TTCTGCATGTTGTATCTAGTCTGATGTACTTATCCATCTCATTACAAACAAAAACACACAGACTGCATTTGTAGCTCTGTAATCCTTGAA TACGGAAGTAAATTTTCTTCTTTCCTGACTTTGACATTGTAGCTATACTGTTTCCATTTTTGTTTTTACAAATCCTTTGGGTCTAATTCT GTGAGCCTACCTATAGCACTGGATTAAAATGTCTGCATCATTTCTTTAGTTATCCAGTTAACTTTAAAACTGTTGTAAAAGTGTAAACCA GCCCATGACAGGTTTTTGTACATGTTAAAGAACTTCATTGTTCAGTTTTCATGATTATTGTGTAAGGAAGACTGATGTAGATGTTCTGTG CTGTCCTGGACCATGTTAATTACACTTACGACGTATTTTAGTTCCACATCACAATGATTTGTCCCCAGTGACCCTTTTATCCTTTCTAGG CACATTTCTTGTTGTTGTTGTTGTTGCAGTTCCCCTTTGCATTGTATTGCTTTGACAACTGTAATTTGAATCAGATCTGAAAGAGGTCCA GAATAAAATATATTTTGATATTATGTTGGCTGTGTACATATATAAAACCTTTGATGTCTATGTAGTTTATATAGACTATTTACTAGTCAG GTAAAGAGAGAGGGATGGTATTTCTTGTTTACAGTTTGTTTACATTTTAATTGCTTTTACTTCTCCAGTGTTCTATTGTAGAATAAACCT TTTTTTCCAAGTTAGCCTTCATAACCTATAACACATTCATTCTCTCCCATACTGGTGTTACTGATTAATAACTGCCATCAGAACCCAAAC CACTGTTTTTCATAAACGTATTGTTTCCCAAGATATATACTTTAAGCCCATAATAAAATTACAAATTTTACTATTTTTATTACTTCTTGC AGGAGATAAGATTTTTTTAAATGAAGGGGTTATTTACTATTTTTATTAAAGTATAATAGAGCATCTAATCAGCTAAGGGATTGTAATTTT TAATTCTTTTGAAAAATAAATATTGTATTTAAAAGACGTTATTTCACAGAAGCTGAAAAAGAGACCTTAGATAACATTTGTTTGGTTAGC CACACGGTTGAGCACAAAACAATGTGTAGATGTGTTGAAGATTAGGGCAGGAGGCTCAACTTCTCGGTGACCTTTTTTTGCTTCACAACA AGCCAATTATAGTTGAATCATTTTCTCTCTTAGCTAGTTGTTACTACAAACTTTATAAGAAAAACAACTAGACACCTTCTAGTTTTAATT AATACCAACTCCTTTAGAGTTAGAGACTTTTTAAAAAGAATCATTGAGCATATTTTCTTTTTTTTTTTTTTAAGAATTTACACTCTCTAG GTCTTCTATTTTTCCTGTTTATTTCCTTAAACAGAAATAAATTCAAGCATAGTTTTATGTTTTATTAGAAATAAGCCACTGCAGTTGCTA GAACTGACATGCTTTCATTTTCAAGGGGTTAACTTTTATTGCATGGCATAGATTATTAGTAATATCCTGCATTGTATACTTTTCCAAAAA GGGTTGGACTCCTAAGGATTAGAATCCTTATAAGCTTGAGGGAAAGCTGAAACTAATTTGAACAGTAATAGAAGGGATTATTTTTAATTT CATAGTTAACACTTTACAATGGATTAGATTTATTACCTAGTATAATCCGTAGCAGATCAGATCAAAGTTTACTGTTTTACCAATATATTC ATTTGAAAAAATACAGTGGAGGAAAAGACACTTTAGATGGTAGTTTTATGGTGCTTTTCTCTGCTGTACCAAAGTGCTTTGTCATCAATG AAATGTTAACCCTATGCTACTTTTTCTGCATGCTTCTTAAATGTCATCTTAATGCTTAATTGTCCTAACTTGTAATATTTTTGTATTAAA >In-frame_ENST00000265537_ENST00000430069_TCGA-FA-A4XK-01A_LARS2_chr3_45461221_+_TBL1XR1_chr3_176769514_length(amino acids)=618AA_start in transcript=262_stop in transcript=2118 MASVWQRLGFYASLLKRQLNGGPDVIKWERRVIPGCTRSIYSATGKWTKEYTLQTRKDVEKWWHQRIKEQASKISEADKSKPKFYVLSMF PYPSGKLHMGHVRVYTISDTIARFQKMRGMQVINPMGWDAFGLPAENAAVERNLHPQSWTQSNIKHMRKQLDRLGLCFSWDRDGTLFDGR PIESLSLIDAVMPDVVQTRQQAYRDKLAQQQAAAAAAAAAAASQQGSAKNGENTANGEENGAHTIANNHTDMMEVDGDVEIPPNKAVVLR GHESEVFICAWNPVSDLLASGSGDSTARIWNLSENSTSGSTQLVLRHCIREGGQDVPSNKDVTSLDWNSEGTLLATGSYDGFARIWTKDG NLASTLGQHKGPIFALKWNKKGNFILSAGVDKTTIIWDAHTGEAKQQFPFHSAPALDVDWQSNNTFASCSTDMCIHVCKLGQDRPIKTFQ GHTNEVNAIKWDPTGNLLASCSDDMTLKIWSMKQDNCVHDLQAHNKEIYTIKWSPTGPGTNNPNANLMLASASFDSTVRLWDVDRGICIH -------------------------------------------------------------- >In-frame_ENST00000265537_ENST00000457928_TCGA-FA-A4XK-01A_LARS2_chr3_45461221_+_TBL1XR1_chr3_176769514_length(transcript)=4297nt_BP=778nt GTTGCTCTCCTCCCTTCCCCGGTCCCGCCCCCGTCTGTCTGTGTCGACTGCGGACGCTATCGATAAAGTTGCTGTTTTGACAACATGGCG GCGCCCATGGTCCGTGGCCCGGCAGTGCTCGCCTAAAGGTGGAGAACGAGGAGTAGAGGAGCCGCAGGCCAGAGCCTGTGAGCAGATCCA GACCTACAGATAAAAAACATTATTTAATCTATCTGGGATTTACTCCGGCTTATGATTTGAGGGCCTTCTCACCTTCTGAAGAATGGCTTC TGTTTGGCAGAGATTGGGTTTTTATGCCTCTCTTCTGAAAAGACAGCTAAATGGTGGGCCAGATGTCATCAAGTGGGAAAGGAGAGTAAT TCCCGGATGTACCAGAAGCATCTACAGTGCCACGGGAAAGTGGACAAAAGAGTATACATTGCAGACAAGAAAGGATGTTGAGAAATGGTG GCATCAACGAATAAAAGAACAGGCCTCCAAAATTTCAGAAGCTGATAAATCGAAGCCAAAATTTTACGTGCTTTCCATGTTCCCTTATCC TTCTGGTAAGCTGCACATGGGCCATGTGCGTGTCTACACCATCAGCGACACCATAGCACGGTTCCAGAAGATGAGAGGGATGCAGGTCAT CAACCCCATGGGATGGGATGCTTTTGGATTGCCTGCTGAAAATGCCGCAGTCGAGAGGAATCTACATCCACAAAGTTGGACACAAAGTAA TATTAAACACATGAGGAAACAGCTTGATCGTCTGGGCCTGTGTTTCAGCTGGGATAGGGATGGTACCTTGTTTGATGGTCGACCAATAGA GTCTCTGTCCCTGATAGATGCCGTAATGCCTGATGTAGTACAAACAAGACAACAAGCTTATAGAGATAAGCTTGCACAGCAACAGGCAGC AGCTGCTGCAGCTGCCGCAGCTGCAGCCAGCCAACAAGGATCTGCAAAAAATGGAGAAAACACAGCAAATGGGGAGGAGAATGGAGCACA TACTATAGCAAATAATCATACTGATATGATGGAAGTGGATGGGGATGTTGAAATCCCTCCTAATAAAGCTGTTGTGTTGCGGGGCCATGA ATCTGAAGTTTTTATCTGTGCCTGGAACCCTGTTAGTGATCTCCTAGCATCAGGGTCTGGAGACTCAACAGCAAGAATATGGAATCTTAG TGAGAACAGCACCAGTGGCTCTACACAGTTAGTACTTAGACATTGTATACGAGAAGGAGGGCAAGATGTTCCAAGCAACAAGGATGTCAC ATCTCTAGATTGGAATAGTGAAGGTACACTTCTAGCAACTGGTTCCTATGATGGGTTTGCCAGAATATGGACTAAAGATGGTAACCTTGC TAGCACCTTAGGGCAGCATAAAGGCCCTATATTTGCATTAAAATGGAATAAGAAAGGAAATTTCATCCTAAGTGCTGGAGTAGACAAGAC TACAATTATTTGGGACGCACATACTGGTGAAGCCAAGCAACAGTTTCCTTTTCATTCAGCACCAGCATTGGATGTTGATTGGCAGAGCAA CAACACCTTTGCTTCTTGTAGTACAGATATGTGCATTCATGTCTGTAAATTAGGACAAGACAGACCTATTAAAACATTCCAAGGACATAC GAATGAAGTAAATGCTATCAAATGGGACCCAACTGGCAATCTCTTGGCCTCCTGTTCTGACGACATGACTTTAAAGATATGGAGTATGAA ACAAGACAATTGTGTCCATGATTTGCAAGCACATAATAAAGAAATTTATACTATCAAATGGAGTCCAACAGGACCAGGGACTAATAATCC AAATGCCAACCTTATGTTAGCAAGTGCATCCTTTGATTCTACTGTTAGGTTATGGGATGTAGACCGAGGGATATGCATCCATACCTTGAC AAAACACCAAGAGCCTGTGTACAGTGTAGCTTTCAGTCCTGATGGCAGGTATCTGGCAAGTGGTTCTTTTGACAAATGTGTACACATCTG GAACACGCAGACAGGTGCTCTAGTTCACAGCTATAGGGGAACAGGTGGAATATTTGAAGTTTGCTGGAATGCAGCAGGAGACAAAGTTGG AGCCAGTGCATCAGATGGTTCAGTTTGTGTATTAGACCTTCGGAAATAGCGCTACTAGTTGGAAGCCATGGACCGACTATGAATGTGTAC ATAGCCAAAATGACTGTCCCTGACCCATGTACTGCTATAGTCCCACTTGAACCATGGCCAGTCCACTACAGCCAAATCTAAAAGAAATAT ATACATACAGTGTATATAAACAAAATTGCACCCTGAAGATGACAGAGTTTTGTCACAGCTTGTGAATTCTGTTCACCAAGTGCTGGAATC TAATCTGCTGTGCCCCTAAAATAGCATTTAGAAGTTTTGGATATGAAAAACAGAAGAGAGAAAAATATACATTATAAAAGCAGAACATAC ATGTACCAGTTTTTGGATACTAAATGACAGCCTTGTTTCTCCCCTTTGAATCAGCAGACACCATGGATTATATTCTTTTTTTCCCTTCAG TAGTGAGCAGTTTGTATGTACAGAGAAAATGGACTTACAAAAACTTGCAGCAGTAGTTTGTTCTTGCTTTAAAATTTCGTTTTTGGTTTA GATTATGGATGCATGAAGTAAGGGAGTGAATCAGTTTCTTGTTTATATTTTTTTCACCTTTTAAACAAAAAATTCTTTAAAATATTTTAA TGCATTCTTTTGAAGAGGTAGATGTTTGGTACATTTTATGGCTCCCAGAGCATATATTCAGTTGGTGCATGTTGTGGAAGGGGGAATTGG AAATTAAATGAAAACCTATGACTTTGGTCATGTCAATCTGTAAGACACATCAGTAAAAGGGTATTATGCTCTGTTGGTTTTGTTTTTTTG TTTTGCTTTTTTTTTTTTTTTTTCTTTTTTGTTTTTTGGTGATGTGGCTTAAATGCAATAGTTTCTTTTTTGGGACATATTTCTGCCAAT TAAAGACTAGAAGGGCACAACTTTTTTTTTAATTACCATAGAGAAGATACATTAAAAAAAATCTTCTGATGTTTTGTAGCCATAACTAAA TTATGGTAAAAATGTGCACTATTGTGAAAAGGAGCAACGTAGTTTTGGGTTTTTTGTTGTTTGTTTGTTTTGCTTTGTTTTTTAAGAGAT TAAAATGTTTCTGGATAAGGATTAGCTTCTCGAAGTGTCCATCATTCTGTGTAGAAGCTTAAATATGTAATGTAACCAAACTCCAGTATT AAAAATCTCTCATGTTGTTTTCTTTATACAAAGCAAGATAACGGCATATAACACTGCCATTACATGGCAAAATGTTTGCTACCTTAGTTT AAAAAACAATCTCAAACAAAAGACTTGCTTCAAGGTGTTTTTAAATAGCAGTGATTCAGAATTTTTTTTAATGAAAGTATAATTGCACTA ACCTTCTTCCTGCTGCTCTGATTCTGCATTTGTGGTACTTGTGACTACGTTTTTTCAAATATAGATAGATTTAAGCTGCTAATTTTTTTT TTTTTAGTAATCACTACTATATCATGTCTTTTACTCTGTTTATAATATCAAGTATTTTCTTAAAGATATAGATATTAAACCTTGTGCTCA TGCAACTTAGAGTAACATATACAGACAAATGATTGCATGAGGCCATGTTTATATGTGTGACTAATAAGGCTTGTCATGATTAACATAATC CAGGTATGTCATTTCTGAAGAGAATAGTCATCAAATTTATATCTCGAAGATTTTAATTAAGGAATTGCTTATTGTTGAGCTTAGCAAATT AATAACACTATTTCTGTCACTAATTATTTTGAGGCCTTTTAGTACTAAAATTTTAACCTGTGTTCTAAGTAGAAACTGATTTAACCCAAG TAATGCAGCTTTGATTGATTTCAGCATTCGTTGCTTTGCTATTTTTACAAAACAGCATTGATTGAAGCAAGTCTTGGTTTTACTAAGGTA GGGTAGCATTTGCTATTGGTAAAGAGAATAAATACACTTAATTTCACAATACATTGTTATATGTACCCCAGTTGTTGTTAGTGGGGACTA TGATACTGTAATAATATTTTTAAAAATTTACATCAAGAGAGGCAGTCATTCACGATGGTTTTGTGCCAGCTCTTTTTAGGGTTTTGGATC ACATTAGAGATATTTAGAACATATTACCCTGTGACTTACGTAGGAAACCTAATATGCTGAGTATCTGGCACTTGAATTCCTGCTTTTATT >In-frame_ENST00000265537_ENST00000457928_TCGA-FA-A4XK-01A_LARS2_chr3_45461221_+_TBL1XR1_chr3_176769514_length(amino acids)=618AA_start in transcript=262_stop in transcript=2118 MASVWQRLGFYASLLKRQLNGGPDVIKWERRVIPGCTRSIYSATGKWTKEYTLQTRKDVEKWWHQRIKEQASKISEADKSKPKFYVLSMF PYPSGKLHMGHVRVYTISDTIARFQKMRGMQVINPMGWDAFGLPAENAAVERNLHPQSWTQSNIKHMRKQLDRLGLCFSWDRDGTLFDGR PIESLSLIDAVMPDVVQTRQQAYRDKLAQQQAAAAAAAAAAASQQGSAKNGENTANGEENGAHTIANNHTDMMEVDGDVEIPPNKAVVLR GHESEVFICAWNPVSDLLASGSGDSTARIWNLSENSTSGSTQLVLRHCIREGGQDVPSNKDVTSLDWNSEGTLLATGSYDGFARIWTKDG NLASTLGQHKGPIFALKWNKKGNFILSAGVDKTTIIWDAHTGEAKQQFPFHSAPALDVDWQSNNTFASCSTDMCIHVCKLGQDRPIKTFQ GHTNEVNAIKWDPTGNLLASCSDDMTLKIWSMKQDNCVHDLQAHNKEIYTIKWSPTGPGTNNPNANLMLASASFDSTVRLWDVDRGICIH -------------------------------------------------------------- >In-frame_ENST00000415258_ENST00000430069_TCGA-FA-A4XK-01A_LARS2_chr3_45461221_+_TBL1XR1_chr3_176769514_length(transcript)=8141nt_BP=657nt GCTATCGATAAAGTTGCTGTTTTGACAACATGGCGGCGCCCATGGTCCGTGGCCCGGCAGTGCTCGCCTAAAGGTGGAGAACGAGGAGTA GAGGAGCCGCAGGCCAGAGCCTGTGAGCAGGGCCTTCTCACCTTCTGAAGAATGGCTTCTGTTTGGCAGAGATTGGGTTTTTATGCCTCT CTTCTGAAAAGACAGCTAAATGGTGGGCCAGATGTCATCAAGTGGGAAAGGAGAGTAATTCCCGGATGTACCAGAAGCATCTACAGTGCC ACGGGAAAGTGGACAAAAGAGTATACATTGCAGACAAGAAAGGATGTTGAGAAATGGTGGCATCAACGAATAAAAGAACAGGCCTCCAAA ATTTCAGAAGCTGATAAATCGAAGCCAAAATTTTACGTGCTTTCCATGTTCCCTTATCCTTCTGGTAAGCTGCACATGGGCCATGTGCGT GTCTACACCATCAGCGACACCATAGCACGGTTCCAGAAGATGAGAGGGATGCAGGTCATCAACCCCATGGGATGGGATGCTTTTGGATTG CCTGCTGAAAATGCCGCAGTCGAGAGGAATCTACATCCACAAAGTTGGACACAAAGTAATATTAAACACATGAGGAAACAGCTTGATCGT CTGGGCCTGTGTTTCAGCTGGGATAGGGATGGTACCTTGTTTGATGGTCGACCAATAGAGTCTCTGTCCCTGATAGATGCCGTAATGCCT GATGTAGTACAAACAAGACAACAAGCTTATAGAGATAAGCTTGCACAGCAACAGGCAGCAGCTGCTGCAGCTGCCGCAGCTGCAGCCAGC CAACAAGGATCTGCAAAAAATGGAGAAAACACAGCAAATGGGGAGGAGAATGGAGCACATACTATAGCAAATAATCATACTGATATGATG GAAGTGGATGGGGATGTTGAAATCCCTCCTAATAAAGCTGTTGTGTTGCGGGGCCATGAATCTGAAGTTTTTATCTGTGCCTGGAACCCT GTTAGTGATCTCCTAGCATCAGGGTCTGGAGACTCAACAGCAAGAATATGGAATCTTAGTGAGAACAGCACCAGTGGCTCTACACAGTTA GTACTTAGACATTGTATACGAGAAGGAGGGCAAGATGTTCCAAGCAACAAGGATGTCACATCTCTAGATTGGAATAGTGAAGGTACACTT CTAGCAACTGGTTCCTATGATGGGTTTGCCAGAATATGGACTAAAGATGGTAACCTTGCTAGCACCTTAGGGCAGCATAAAGGCCCTATA TTTGCATTAAAATGGAATAAGAAAGGAAATTTCATCCTAAGTGCTGGAGTAGACAAGACTACAATTATTTGGGACGCACATACTGGTGAA GCCAAGCAACAGTTTCCTTTTCATTCAGCACCAGCATTGGATGTTGATTGGCAGAGCAACAACACCTTTGCTTCTTGTAGTACAGATATG TGCATTCATGTCTGTAAATTAGGACAAGACAGACCTATTAAAACATTCCAAGGACATACGAATGAAGTAAATGCTATCAAATGGGACCCA ACTGGCAATCTCTTGGCCTCCTGTTCTGACGACATGACTTTAAAGATATGGAGTATGAAACAAGACAATTGTGTCCATGATTTGCAAGCA CATAATAAAGAAATTTATACTATCAAATGGAGTCCAACAGGACCAGGGACTAATAATCCAAATGCCAACCTTATGTTAGCAAGTGCATCC TTTGATTCTACTGTTAGGTTATGGGATGTAGACCGAGGGATATGCATCCATACCTTGACAAAACACCAAGAGCCTGTGTACAGTGTAGCT TTCAGTCCTGATGGCAGGTATCTGGCAAGTGGTTCTTTTGACAAATGTGTACACATCTGGAACACGCAGACAGGTGCTCTAGTTCACAGC TATAGGGGAACAGGTGGAATATTTGAAGTTTGCTGGAATGCAGCAGGAGACAAAGTTGGAGCCAGTGCATCAGATGGTTCAGTTTGTGTA TTAGACCTTCGGAAATAGCGCTACTAGTTGGAAGCCATGGACCGACTATGAATGTGTACATAGCCAAAATGACTGTCCCTGACCCATGTA CTGCTATAGTCCCACTTGAACCATGGCCAGTCCACTACAGCCAAATCTAAAAGAAATATATACATACAGTGTATATAAACAAAATTGCAC CCTGAAGATGACAGAGTTTTGTCACAGCTTGTGAATTCTGTTCACCAAGTGCTGGAATCTAATCTGCTGTGCCCCTAAAATAGCATTTAG AAGTTTTGGATATGAAAAACAGAAGAGAGAAAAATATACATTATAAAAGCAGAACATACATGTACCAGTTTTTGGATACTAAATGACAGC CTTGTTTCTCCCCTTTGAATCAGCAGACACCATGGATTATATTCTTTTTTTCCCTTCAGTAGTGAGCAGTTTGTATGTACAGAGAAAATG GACTTACAAAAACTTGCAGCAGTAGTTTGTTCTTGCTTTAAAATTTCGTTTTTGGTTTAGATTATGGATGCATGAAGTAAGGGAGTGAAT CAGTTTCTTGTTTATATTTTTTTCACCTTTTAAACAAAAAATTCTTTAAAATATTTTAATGCATTCTTTTGAAGAGGTAGATGTTTGGTA CATTTTATGGCTCCCAGAGCATATATTCAGTTGGTGCATGTTGTGGAAGGGGGAATTGGAAATTAAATGAAAACCTATGACTTTGGTCAT GTCAATCTGTAAGACACATCAGTAAAAGGGTATTATGCTCTGTTGGTTTTGTTTTTTTGTTTTGCTTTTTTTTTTTTTTTTTCTTTTTTG TTTTTTGGTGATGTGGCTTAAATGCAATAGTTTCTTTTTTGGGACATATTTCTGCCAATTAAAGACTAGAAGGGCACAACTTTTTTTTTA ATTACCATAGAGAAGATACATTAAAAAAAATCTTCTGATGTTTTGTAGCCATAACTAAATTATGGTAAAAATGTGCACTATTGTGAAAAG GAGCAACGTAGTTTTGGGTTTTTTGTTGTTTGTTTGTTTTGCTTTGTTTTTTAAGAGATTAAAATGTTTCTGGATAAGGATTAGCTTCTC GAAGTGTCCATCATTCTGTGTAGAAGCTTAAATATGTAATGTAACCAAACTCCAGTATTAAAAATCTCTCATGTTGTTTTCTTTATACAA AGCAAGATAACGGCATATAACACTGCCATTACATGGCAAAATGTTTGCTACCTTAGTTTAAAAAACAATCTCAAACAAAAGACTTGCTTC AAGGTGTTTTTAAATAGCAGTGATTCAGAATTTTTTTTAATGAAAGTATAATTGCACTAACCTTCTTCCTGCTGCTCTGATTCTGCATTT GTGGTACTTGTGACTACGTTTTTTCAAATATAGATAGATTTAAGCTGCTAATTTTTTTTTTTTTAGTAATCACTACTATATCATGTCTTT TACTCTGTTTATAATATCAAGTATTTTCTTAAAGATATAGATATTAAACCTTGTGCTCATGCAACTTAGAGTAACATATACAGACAAATG ATTGCATGAGGCCATGTTTATATGTGTGACTAATAAGGCTTGTCATGATTAACATAATCCAGGTATGTCATTTCTGAAGAGAATAGTCAT CAAATTTATATCTCGAAGATTTTAATTAAGGAATTGCTTATTGTTGAGCTTAGCAAATTAATAACACTATTTCTGTCACTAATTATTTTG AGGCCTTTTAGTACTAAAATTTTAACCTGTGTTCTAAGTAGAAACTGATTTAACCCAAGTAATGCAGCTTTGATTGATTTCAGCATTCGT TGCTTTGCTATTTTTACAAAACAGCATTGATTGAAGCAAGTCTTGGTTTTACTAAGGTAGGGTAGCATTTGCTATTGGTAAAGAGAATAA ATACACTTAATTTCACAATACATTGTTATATGTACCCCAGTTGTTGTTAGTGGGGACTATGATACTGTAATAATATTTTTAAAAATTTAC ATCAAGAGAGGCAGTCATTCACGATGGTTTTGTGCCAGCTCTTTTTAGGGTTTTGGATCACATTAGAGATATTTAGAACATATTACCCTG TGACTTACGTAGGAAACCTAATATGCTGAGTATCTGGCACTTGAATTCCTGCTTTTATTGCTGGAGGTCCACATCTGTGGTTGACCTCTG TTATTGTTTAAAAAAAATAAATAAAAATTAAAAAAATCTGTGCAATAATTTTAAAATGTGCTCCCAGGAATAGACACAAATGTTTTGAGT ATCTTTTAAGCTGCATTTTCCTTTAGTGATGCATTTGTCAATTGCACTGAATTTAAATCTGAAAGTCAGAGGTGATTATTGATAGTACTT TTGTATTTTGATATGGACAGTTTATTCATTTGCATACAGTTATTGACTTTTTCCCAGCTGATTAAAAGATAGTCAAGAAATTCTGCAATA TAGCTGCCAAAATAGACAGCTACATTTTTATGATATTGTCATCTTTTCTGTTTTTTTTTTCTTTTTTTTCTTTAGCTATTTTACTTAAGC ATAATAGCCACAATAGGACATATAAAAGATTATAAATACAGAGCTTTATTATCCTGACGTCTTGGGTCTTTTAAGTATATACTTTTCTGA AAGGTATCCATTTTGTAGGCTTGGGTTCTTCATGAGCATACGATTGTTTATTTTTGCTGCTGTTCTCAACATCATCATTGCCTGCTGATG TGCCACGATGCTGCTCCAATAGACAGCAATAAGATTGTCTCTAATTTGAGCAGTAACATGATTGCAAGAGACCAAGTTTCACAGCTTGTA AAGTTCTGTATTTGGGATTCTTGCTTATTTTTCCGCCTGTGTTTTTCTGAGAACTTATTCCTGATGATCAATTGAATCCAGTAGTTTTTC TATGCTATTTGTTGTTGTATAAGCTACTGTAAGAAACTTATCATAAGGAAAAATAGAAAGGAAAACTTGAATCAATACTCATTGATTAAA ATGGAATAAAGAAAGAGCAGCTGCCACTTTTAAACAACATAAAGGAATATCTTTTTTTGTCTCCGTGTAGGAAATCCCATAAGTTCTTAT ATTTGTTCCAGTTCCCATTTCCTGCCATTGACCAGATAACATCATTGACTTTCAAATGACTTTTAGAAGTGATAACTCTTAATTTCCTAA TAGATACTAGATTGTATTGAATTCTGTTTTAATTATTCTCTAGGTAAGTATGTTTTAGGATTAAATACCTTTTACAGATACTGAAAGTGC CTCCTTTTGTGGTGTAAAAAACAAATTATGGTGCAAAAAGTAATCACTAGATTGAAATACATGAAGGTTTTTTGCTTTTTGACATACGAA AATGTCAAGAGAAAGGCCAAAGATTTGTACTTTTTCACTTACAAAGCACTCCTTTTTCCCTTAAACTTCTTTCTGTCAAATTAGATTTAA TGAGAGAGTACTATTTTTAAGGAGCTATCTGTTTATGTAGAATGATTTTGTTAAGAGTAATGTAAACTATTATTGAGTAGAGGCCTAAAG AGGACTGTGCATTTTTGCTATTTAAAGGAATCACAAATGATCATACTTAAGTGAGCAAAAATGACAAGTTTTACTAGCTAAGTAGAGAAA TAAATCTCAAATGCAGCGCTACAATTTTCATTATCTTAAGTACATTGTACATTTCTACAGAACCTGTGATTATTCTCGCATGATAAGGAT GGTACTTGCATATGGTGAATTACTACTGTTGACAGTTTCCGCAGAAATCCTATTTCAGTGGACCAACATTGTGGCATGGCAGCAAATGCC AACATTTTGTGGAATAGCAGCAAATCTACAAGAGACCCTGGTTGGTTTTTCGTTTTGTTTTCTTTGTTTTTTCCCCCTTCTCCTGAATCA GCAGGGATGGAAGGAGGGTAGGGAAGTTATGAATTACTCCTTCCAGTAGTAGCTCTGAAGTGTCACATTTAATATCAGTTTTTTTTAAAC ATGATTCTAGTTAAATGTAGAAGAGAGAAGAAAGAGGAAGTGTTCACTTTTTTAATACACTGATTTAGAAATTTGATGTCTTATATCAGT AGTTCTGAGGTATTGATAGCTTGCTTTATTTCTGCCTTTACGTTGACAGTGTTGAAGCAGGGTGAATAACTAGGGCATATATTTTTTTTT TTTTTGTAAGCTGTTTCATGATGTTTTCTTTGGAATTTCCGGATAAGTTCAGGAAAACATTCTGCATGTTGTATCTAGTCTGATGTACTT ATCCATCTCATTACAAACAAAAACACACAGACTGCATTTGTAGCTCTGTAATCCTTGAATACGGAAGTAAATTTTCTTCTTTCCTGACTT TGACATTGTAGCTATACTGTTTCCATTTTTGTTTTTACAAATCCTTTGGGTCTAATTCTGTGAGCCTACCTATAGCACTGGATTAAAATG TCTGCATCATTTCTTTAGTTATCCAGTTAACTTTAAAACTGTTGTAAAAGTGTAAACCAGCCCATGACAGGTTTTTGTACATGTTAAAGA ACTTCATTGTTCAGTTTTCATGATTATTGTGTAAGGAAGACTGATGTAGATGTTCTGTGCTGTCCTGGACCATGTTAATTACACTTACGA CGTATTTTAGTTCCACATCACAATGATTTGTCCCCAGTGACCCTTTTATCCTTTCTAGGCACATTTCTTGTTGTTGTTGTTGTTGCAGTT CCCCTTTGCATTGTATTGCTTTGACAACTGTAATTTGAATCAGATCTGAAAGAGGTCCAGAATAAAATATATTTTGATATTATGTTGGCT GTGTACATATATAAAACCTTTGATGTCTATGTAGTTTATATAGACTATTTACTAGTCAGGTAAAGAGAGAGGGATGGTATTTCTTGTTTA CAGTTTGTTTACATTTTAATTGCTTTTACTTCTCCAGTGTTCTATTGTAGAATAAACCTTTTTTTCCAAGTTAGCCTTCATAACCTATAA CACATTCATTCTCTCCCATACTGGTGTTACTGATTAATAACTGCCATCAGAACCCAAACCACTGTTTTTCATAAACGTATTGTTTCCCAA GATATATACTTTAAGCCCATAATAAAATTACAAATTTTACTATTTTTATTACTTCTTGCAGGAGATAAGATTTTTTTAAATGAAGGGGTT ATTTACTATTTTTATTAAAGTATAATAGAGCATCTAATCAGCTAAGGGATTGTAATTTTTAATTCTTTTGAAAAATAAATATTGTATTTA AAAGACGTTATTTCACAGAAGCTGAAAAAGAGACCTTAGATAACATTTGTTTGGTTAGCCACACGGTTGAGCACAAAACAATGTGTAGAT GTGTTGAAGATTAGGGCAGGAGGCTCAACTTCTCGGTGACCTTTTTTTGCTTCACAACAAGCCAATTATAGTTGAATCATTTTCTCTCTT AGCTAGTTGTTACTACAAACTTTATAAGAAAAACAACTAGACACCTTCTAGTTTTAATTAATACCAACTCCTTTAGAGTTAGAGACTTTT TAAAAAGAATCATTGAGCATATTTTCTTTTTTTTTTTTTTAAGAATTTACACTCTCTAGGTCTTCTATTTTTCCTGTTTATTTCCTTAAA CAGAAATAAATTCAAGCATAGTTTTATGTTTTATTAGAAATAAGCCACTGCAGTTGCTAGAACTGACATGCTTTCATTTTCAAGGGGTTA ACTTTTATTGCATGGCATAGATTATTAGTAATATCCTGCATTGTATACTTTTCCAAAAAGGGTTGGACTCCTAAGGATTAGAATCCTTAT AAGCTTGAGGGAAAGCTGAAACTAATTTGAACAGTAATAGAAGGGATTATTTTTAATTTCATAGTTAACACTTTACAATGGATTAGATTT ATTACCTAGTATAATCCGTAGCAGATCAGATCAAAGTTTACTGTTTTACCAATATATTCATTTGAAAAAATACAGTGGAGGAAAAGACAC TTTAGATGGTAGTTTTATGGTGCTTTTCTCTGCTGTACCAAAGTGCTTTGTCATCAATGAAATGTTAACCCTATGCTACTTTTTCTGCAT GCTTCTTAAATGTCATCTTAATGCTTAATTGTCCTAACTTGTAATATTTTTGTATTAAATTTTTTTAGGAGTTCCTTGTAATTTCTTTAC >In-frame_ENST00000415258_ENST00000430069_TCGA-FA-A4XK-01A_LARS2_chr3_45461221_+_TBL1XR1_chr3_176769514_length(amino acids)=618AA_start in transcript=141_stop in transcript=1997 MASVWQRLGFYASLLKRQLNGGPDVIKWERRVIPGCTRSIYSATGKWTKEYTLQTRKDVEKWWHQRIKEQASKISEADKSKPKFYVLSMF PYPSGKLHMGHVRVYTISDTIARFQKMRGMQVINPMGWDAFGLPAENAAVERNLHPQSWTQSNIKHMRKQLDRLGLCFSWDRDGTLFDGR PIESLSLIDAVMPDVVQTRQQAYRDKLAQQQAAAAAAAAAAASQQGSAKNGENTANGEENGAHTIANNHTDMMEVDGDVEIPPNKAVVLR GHESEVFICAWNPVSDLLASGSGDSTARIWNLSENSTSGSTQLVLRHCIREGGQDVPSNKDVTSLDWNSEGTLLATGSYDGFARIWTKDG NLASTLGQHKGPIFALKWNKKGNFILSAGVDKTTIIWDAHTGEAKQQFPFHSAPALDVDWQSNNTFASCSTDMCIHVCKLGQDRPIKTFQ GHTNEVNAIKWDPTGNLLASCSDDMTLKIWSMKQDNCVHDLQAHNKEIYTIKWSPTGPGTNNPNANLMLASASFDSTVRLWDVDRGICIH -------------------------------------------------------------- >In-frame_ENST00000415258_ENST00000457928_TCGA-FA-A4XK-01A_LARS2_chr3_45461221_+_TBL1XR1_chr3_176769514_length(transcript)=4176nt_BP=657nt GCTATCGATAAAGTTGCTGTTTTGACAACATGGCGGCGCCCATGGTCCGTGGCCCGGCAGTGCTCGCCTAAAGGTGGAGAACGAGGAGTA GAGGAGCCGCAGGCCAGAGCCTGTGAGCAGGGCCTTCTCACCTTCTGAAGAATGGCTTCTGTTTGGCAGAGATTGGGTTTTTATGCCTCT CTTCTGAAAAGACAGCTAAATGGTGGGCCAGATGTCATCAAGTGGGAAAGGAGAGTAATTCCCGGATGTACCAGAAGCATCTACAGTGCC ACGGGAAAGTGGACAAAAGAGTATACATTGCAGACAAGAAAGGATGTTGAGAAATGGTGGCATCAACGAATAAAAGAACAGGCCTCCAAA ATTTCAGAAGCTGATAAATCGAAGCCAAAATTTTACGTGCTTTCCATGTTCCCTTATCCTTCTGGTAAGCTGCACATGGGCCATGTGCGT GTCTACACCATCAGCGACACCATAGCACGGTTCCAGAAGATGAGAGGGATGCAGGTCATCAACCCCATGGGATGGGATGCTTTTGGATTG CCTGCTGAAAATGCCGCAGTCGAGAGGAATCTACATCCACAAAGTTGGACACAAAGTAATATTAAACACATGAGGAAACAGCTTGATCGT CTGGGCCTGTGTTTCAGCTGGGATAGGGATGGTACCTTGTTTGATGGTCGACCAATAGAGTCTCTGTCCCTGATAGATGCCGTAATGCCT GATGTAGTACAAACAAGACAACAAGCTTATAGAGATAAGCTTGCACAGCAACAGGCAGCAGCTGCTGCAGCTGCCGCAGCTGCAGCCAGC CAACAAGGATCTGCAAAAAATGGAGAAAACACAGCAAATGGGGAGGAGAATGGAGCACATACTATAGCAAATAATCATACTGATATGATG GAAGTGGATGGGGATGTTGAAATCCCTCCTAATAAAGCTGTTGTGTTGCGGGGCCATGAATCTGAAGTTTTTATCTGTGCCTGGAACCCT GTTAGTGATCTCCTAGCATCAGGGTCTGGAGACTCAACAGCAAGAATATGGAATCTTAGTGAGAACAGCACCAGTGGCTCTACACAGTTA GTACTTAGACATTGTATACGAGAAGGAGGGCAAGATGTTCCAAGCAACAAGGATGTCACATCTCTAGATTGGAATAGTGAAGGTACACTT CTAGCAACTGGTTCCTATGATGGGTTTGCCAGAATATGGACTAAAGATGGTAACCTTGCTAGCACCTTAGGGCAGCATAAAGGCCCTATA TTTGCATTAAAATGGAATAAGAAAGGAAATTTCATCCTAAGTGCTGGAGTAGACAAGACTACAATTATTTGGGACGCACATACTGGTGAA GCCAAGCAACAGTTTCCTTTTCATTCAGCACCAGCATTGGATGTTGATTGGCAGAGCAACAACACCTTTGCTTCTTGTAGTACAGATATG TGCATTCATGTCTGTAAATTAGGACAAGACAGACCTATTAAAACATTCCAAGGACATACGAATGAAGTAAATGCTATCAAATGGGACCCA ACTGGCAATCTCTTGGCCTCCTGTTCTGACGACATGACTTTAAAGATATGGAGTATGAAACAAGACAATTGTGTCCATGATTTGCAAGCA CATAATAAAGAAATTTATACTATCAAATGGAGTCCAACAGGACCAGGGACTAATAATCCAAATGCCAACCTTATGTTAGCAAGTGCATCC TTTGATTCTACTGTTAGGTTATGGGATGTAGACCGAGGGATATGCATCCATACCTTGACAAAACACCAAGAGCCTGTGTACAGTGTAGCT TTCAGTCCTGATGGCAGGTATCTGGCAAGTGGTTCTTTTGACAAATGTGTACACATCTGGAACACGCAGACAGGTGCTCTAGTTCACAGC TATAGGGGAACAGGTGGAATATTTGAAGTTTGCTGGAATGCAGCAGGAGACAAAGTTGGAGCCAGTGCATCAGATGGTTCAGTTTGTGTA TTAGACCTTCGGAAATAGCGCTACTAGTTGGAAGCCATGGACCGACTATGAATGTGTACATAGCCAAAATGACTGTCCCTGACCCATGTA CTGCTATAGTCCCACTTGAACCATGGCCAGTCCACTACAGCCAAATCTAAAAGAAATATATACATACAGTGTATATAAACAAAATTGCAC CCTGAAGATGACAGAGTTTTGTCACAGCTTGTGAATTCTGTTCACCAAGTGCTGGAATCTAATCTGCTGTGCCCCTAAAATAGCATTTAG AAGTTTTGGATATGAAAAACAGAAGAGAGAAAAATATACATTATAAAAGCAGAACATACATGTACCAGTTTTTGGATACTAAATGACAGC CTTGTTTCTCCCCTTTGAATCAGCAGACACCATGGATTATATTCTTTTTTTCCCTTCAGTAGTGAGCAGTTTGTATGTACAGAGAAAATG GACTTACAAAAACTTGCAGCAGTAGTTTGTTCTTGCTTTAAAATTTCGTTTTTGGTTTAGATTATGGATGCATGAAGTAAGGGAGTGAAT CAGTTTCTTGTTTATATTTTTTTCACCTTTTAAACAAAAAATTCTTTAAAATATTTTAATGCATTCTTTTGAAGAGGTAGATGTTTGGTA CATTTTATGGCTCCCAGAGCATATATTCAGTTGGTGCATGTTGTGGAAGGGGGAATTGGAAATTAAATGAAAACCTATGACTTTGGTCAT GTCAATCTGTAAGACACATCAGTAAAAGGGTATTATGCTCTGTTGGTTTTGTTTTTTTGTTTTGCTTTTTTTTTTTTTTTTTCTTTTTTG TTTTTTGGTGATGTGGCTTAAATGCAATAGTTTCTTTTTTGGGACATATTTCTGCCAATTAAAGACTAGAAGGGCACAACTTTTTTTTTA ATTACCATAGAGAAGATACATTAAAAAAAATCTTCTGATGTTTTGTAGCCATAACTAAATTATGGTAAAAATGTGCACTATTGTGAAAAG GAGCAACGTAGTTTTGGGTTTTTTGTTGTTTGTTTGTTTTGCTTTGTTTTTTAAGAGATTAAAATGTTTCTGGATAAGGATTAGCTTCTC GAAGTGTCCATCATTCTGTGTAGAAGCTTAAATATGTAATGTAACCAAACTCCAGTATTAAAAATCTCTCATGTTGTTTTCTTTATACAA AGCAAGATAACGGCATATAACACTGCCATTACATGGCAAAATGTTTGCTACCTTAGTTTAAAAAACAATCTCAAACAAAAGACTTGCTTC AAGGTGTTTTTAAATAGCAGTGATTCAGAATTTTTTTTAATGAAAGTATAATTGCACTAACCTTCTTCCTGCTGCTCTGATTCTGCATTT GTGGTACTTGTGACTACGTTTTTTCAAATATAGATAGATTTAAGCTGCTAATTTTTTTTTTTTTAGTAATCACTACTATATCATGTCTTT TACTCTGTTTATAATATCAAGTATTTTCTTAAAGATATAGATATTAAACCTTGTGCTCATGCAACTTAGAGTAACATATACAGACAAATG ATTGCATGAGGCCATGTTTATATGTGTGACTAATAAGGCTTGTCATGATTAACATAATCCAGGTATGTCATTTCTGAAGAGAATAGTCAT CAAATTTATATCTCGAAGATTTTAATTAAGGAATTGCTTATTGTTGAGCTTAGCAAATTAATAACACTATTTCTGTCACTAATTATTTTG AGGCCTTTTAGTACTAAAATTTTAACCTGTGTTCTAAGTAGAAACTGATTTAACCCAAGTAATGCAGCTTTGATTGATTTCAGCATTCGT TGCTTTGCTATTTTTACAAAACAGCATTGATTGAAGCAAGTCTTGGTTTTACTAAGGTAGGGTAGCATTTGCTATTGGTAAAGAGAATAA ATACACTTAATTTCACAATACATTGTTATATGTACCCCAGTTGTTGTTAGTGGGGACTATGATACTGTAATAATATTTTTAAAAATTTAC ATCAAGAGAGGCAGTCATTCACGATGGTTTTGTGCCAGCTCTTTTTAGGGTTTTGGATCACATTAGAGATATTTAGAACATATTACCCTG TGACTTACGTAGGAAACCTAATATGCTGAGTATCTGGCACTTGAATTCCTGCTTTTATTGCTGGAGGTCCACATCTGTGGTTGACCTCTG >In-frame_ENST00000415258_ENST00000457928_TCGA-FA-A4XK-01A_LARS2_chr3_45461221_+_TBL1XR1_chr3_176769514_length(amino acids)=618AA_start in transcript=141_stop in transcript=1997 MASVWQRLGFYASLLKRQLNGGPDVIKWERRVIPGCTRSIYSATGKWTKEYTLQTRKDVEKWWHQRIKEQASKISEADKSKPKFYVLSMF PYPSGKLHMGHVRVYTISDTIARFQKMRGMQVINPMGWDAFGLPAENAAVERNLHPQSWTQSNIKHMRKQLDRLGLCFSWDRDGTLFDGR PIESLSLIDAVMPDVVQTRQQAYRDKLAQQQAAAAAAAAAAASQQGSAKNGENTANGEENGAHTIANNHTDMMEVDGDVEIPPNKAVVLR GHESEVFICAWNPVSDLLASGSGDSTARIWNLSENSTSGSTQLVLRHCIREGGQDVPSNKDVTSLDWNSEGTLLATGSYDGFARIWTKDG NLASTLGQHKGPIFALKWNKKGNFILSAGVDKTTIIWDAHTGEAKQQFPFHSAPALDVDWQSNNTFASCSTDMCIHVCKLGQDRPIKTFQ GHTNEVNAIKWDPTGNLLASCSDDMTLKIWSMKQDNCVHDLQAHNKEIYTIKWSPTGPGTNNPNANLMLASASFDSTVRLWDVDRGICIH -------------------------------------------------------------- >In-frame_ENST00000414984_ENST00000430069_TCGA-FA-A4XK-01A_LARS2_chr3_45461221_+_TBL1XR1_chr3_176769514_length(transcript)=8009nt_BP=525nt ATCGATAAAGTTGCTGTTTTGACAACATGGCGGCGCCCATGGTCCGTGGCCCGGCAGTGCTCGCCTAAAGGTGGAGAACGAGGAGTAGAG GAGCCGCAGGCCAGAGCCTGTGAGCAGGGCCTTCTCACCTTCTGAAGAATGGCTTCTGTTTGGCAGAGATTGGGTTTTTATGCCTCTCTT CTGAAAAGACAGCTAAATGGTGGGCCAGATGTCATCAAGTGGGAAAGGAGAGTAATTCCCGGATGTACCAGAAGCATCTACAGTGCCACG GGAAAGTGGACAAAAGAGTATACATTGCAGACAAGAAAGGATGTTGAGAAATGGTGGCATCAACGAATAAAAGAACAGGCCTCCAAAATT TCAGAAGCTGATGTCATCAACCCCATGGGATGGGATGCTTTTGGATTGCCTGCTGAAAATGCCGCAGTCGAGAGGAATCTACATCCACAA AGTTGGACACAAAGTAATATTAAACACATGAGGAAACAGCTTGATCGTCTGGGCCTGTGTTTCAGCTGGGATAGGGATGGTACCTTGTTT GATGGTCGACCAATAGAGTCTCTGTCCCTGATAGATGCCGTAATGCCTGATGTAGTACAAACAAGACAACAAGCTTATAGAGATAAGCTT GCACAGCAACAGGCAGCAGCTGCTGCAGCTGCCGCAGCTGCAGCCAGCCAACAAGGATCTGCAAAAAATGGAGAAAACACAGCAAATGGG GAGGAGAATGGAGCACATACTATAGCAAATAATCATACTGATATGATGGAAGTGGATGGGGATGTTGAAATCCCTCCTAATAAAGCTGTT GTGTTGCGGGGCCATGAATCTGAAGTTTTTATCTGTGCCTGGAACCCTGTTAGTGATCTCCTAGCATCAGGGTCTGGAGACTCAACAGCA AGAATATGGAATCTTAGTGAGAACAGCACCAGTGGCTCTACACAGTTAGTACTTAGACATTGTATACGAGAAGGAGGGCAAGATGTTCCA AGCAACAAGGATGTCACATCTCTAGATTGGAATAGTGAAGGTACACTTCTAGCAACTGGTTCCTATGATGGGTTTGCCAGAATATGGACT AAAGATGGTAACCTTGCTAGCACCTTAGGGCAGCATAAAGGCCCTATATTTGCATTAAAATGGAATAAGAAAGGAAATTTCATCCTAAGT GCTGGAGTAGACAAGACTACAATTATTTGGGACGCACATACTGGTGAAGCCAAGCAACAGTTTCCTTTTCATTCAGCACCAGCATTGGAT GTTGATTGGCAGAGCAACAACACCTTTGCTTCTTGTAGTACAGATATGTGCATTCATGTCTGTAAATTAGGACAAGACAGACCTATTAAA ACATTCCAAGGACATACGAATGAAGTAAATGCTATCAAATGGGACCCAACTGGCAATCTCTTGGCCTCCTGTTCTGACGACATGACTTTA AAGATATGGAGTATGAAACAAGACAATTGTGTCCATGATTTGCAAGCACATAATAAAGAAATTTATACTATCAAATGGAGTCCAACAGGA CCAGGGACTAATAATCCAAATGCCAACCTTATGTTAGCAAGTGCATCCTTTGATTCTACTGTTAGGTTATGGGATGTAGACCGAGGGATA TGCATCCATACCTTGACAAAACACCAAGAGCCTGTGTACAGTGTAGCTTTCAGTCCTGATGGCAGGTATCTGGCAAGTGGTTCTTTTGAC AAATGTGTACACATCTGGAACACGCAGACAGGTGCTCTAGTTCACAGCTATAGGGGAACAGGTGGAATATTTGAAGTTTGCTGGAATGCA GCAGGAGACAAAGTTGGAGCCAGTGCATCAGATGGTTCAGTTTGTGTATTAGACCTTCGGAAATAGCGCTACTAGTTGGAAGCCATGGAC CGACTATGAATGTGTACATAGCCAAAATGACTGTCCCTGACCCATGTACTGCTATAGTCCCACTTGAACCATGGCCAGTCCACTACAGCC AAATCTAAAAGAAATATATACATACAGTGTATATAAACAAAATTGCACCCTGAAGATGACAGAGTTTTGTCACAGCTTGTGAATTCTGTT CACCAAGTGCTGGAATCTAATCTGCTGTGCCCCTAAAATAGCATTTAGAAGTTTTGGATATGAAAAACAGAAGAGAGAAAAATATACATT ATAAAAGCAGAACATACATGTACCAGTTTTTGGATACTAAATGACAGCCTTGTTTCTCCCCTTTGAATCAGCAGACACCATGGATTATAT TCTTTTTTTCCCTTCAGTAGTGAGCAGTTTGTATGTACAGAGAAAATGGACTTACAAAAACTTGCAGCAGTAGTTTGTTCTTGCTTTAAA ATTTCGTTTTTGGTTTAGATTATGGATGCATGAAGTAAGGGAGTGAATCAGTTTCTTGTTTATATTTTTTTCACCTTTTAAACAAAAAAT TCTTTAAAATATTTTAATGCATTCTTTTGAAGAGGTAGATGTTTGGTACATTTTATGGCTCCCAGAGCATATATTCAGTTGGTGCATGTT GTGGAAGGGGGAATTGGAAATTAAATGAAAACCTATGACTTTGGTCATGTCAATCTGTAAGACACATCAGTAAAAGGGTATTATGCTCTG TTGGTTTTGTTTTTTTGTTTTGCTTTTTTTTTTTTTTTTTCTTTTTTGTTTTTTGGTGATGTGGCTTAAATGCAATAGTTTCTTTTTTGG GACATATTTCTGCCAATTAAAGACTAGAAGGGCACAACTTTTTTTTTAATTACCATAGAGAAGATACATTAAAAAAAATCTTCTGATGTT TTGTAGCCATAACTAAATTATGGTAAAAATGTGCACTATTGTGAAAAGGAGCAACGTAGTTTTGGGTTTTTTGTTGTTTGTTTGTTTTGC TTTGTTTTTTAAGAGATTAAAATGTTTCTGGATAAGGATTAGCTTCTCGAAGTGTCCATCATTCTGTGTAGAAGCTTAAATATGTAATGT AACCAAACTCCAGTATTAAAAATCTCTCATGTTGTTTTCTTTATACAAAGCAAGATAACGGCATATAACACTGCCATTACATGGCAAAAT GTTTGCTACCTTAGTTTAAAAAACAATCTCAAACAAAAGACTTGCTTCAAGGTGTTTTTAAATAGCAGTGATTCAGAATTTTTTTTAATG AAAGTATAATTGCACTAACCTTCTTCCTGCTGCTCTGATTCTGCATTTGTGGTACTTGTGACTACGTTTTTTCAAATATAGATAGATTTA AGCTGCTAATTTTTTTTTTTTTAGTAATCACTACTATATCATGTCTTTTACTCTGTTTATAATATCAAGTATTTTCTTAAAGATATAGAT ATTAAACCTTGTGCTCATGCAACTTAGAGTAACATATACAGACAAATGATTGCATGAGGCCATGTTTATATGTGTGACTAATAAGGCTTG TCATGATTAACATAATCCAGGTATGTCATTTCTGAAGAGAATAGTCATCAAATTTATATCTCGAAGATTTTAATTAAGGAATTGCTTATT GTTGAGCTTAGCAAATTAATAACACTATTTCTGTCACTAATTATTTTGAGGCCTTTTAGTACTAAAATTTTAACCTGTGTTCTAAGTAGA AACTGATTTAACCCAAGTAATGCAGCTTTGATTGATTTCAGCATTCGTTGCTTTGCTATTTTTACAAAACAGCATTGATTGAAGCAAGTC TTGGTTTTACTAAGGTAGGGTAGCATTTGCTATTGGTAAAGAGAATAAATACACTTAATTTCACAATACATTGTTATATGTACCCCAGTT GTTGTTAGTGGGGACTATGATACTGTAATAATATTTTTAAAAATTTACATCAAGAGAGGCAGTCATTCACGATGGTTTTGTGCCAGCTCT TTTTAGGGTTTTGGATCACATTAGAGATATTTAGAACATATTACCCTGTGACTTACGTAGGAAACCTAATATGCTGAGTATCTGGCACTT GAATTCCTGCTTTTATTGCTGGAGGTCCACATCTGTGGTTGACCTCTGTTATTGTTTAAAAAAAATAAATAAAAATTAAAAAAATCTGTG CAATAATTTTAAAATGTGCTCCCAGGAATAGACACAAATGTTTTGAGTATCTTTTAAGCTGCATTTTCCTTTAGTGATGCATTTGTCAAT TGCACTGAATTTAAATCTGAAAGTCAGAGGTGATTATTGATAGTACTTTTGTATTTTGATATGGACAGTTTATTCATTTGCATACAGTTA TTGACTTTTTCCCAGCTGATTAAAAGATAGTCAAGAAATTCTGCAATATAGCTGCCAAAATAGACAGCTACATTTTTATGATATTGTCAT CTTTTCTGTTTTTTTTTTCTTTTTTTTCTTTAGCTATTTTACTTAAGCATAATAGCCACAATAGGACATATAAAAGATTATAAATACAGA GCTTTATTATCCTGACGTCTTGGGTCTTTTAAGTATATACTTTTCTGAAAGGTATCCATTTTGTAGGCTTGGGTTCTTCATGAGCATACG ATTGTTTATTTTTGCTGCTGTTCTCAACATCATCATTGCCTGCTGATGTGCCACGATGCTGCTCCAATAGACAGCAATAAGATTGTCTCT AATTTGAGCAGTAACATGATTGCAAGAGACCAAGTTTCACAGCTTGTAAAGTTCTGTATTTGGGATTCTTGCTTATTTTTCCGCCTGTGT TTTTCTGAGAACTTATTCCTGATGATCAATTGAATCCAGTAGTTTTTCTATGCTATTTGTTGTTGTATAAGCTACTGTAAGAAACTTATC ATAAGGAAAAATAGAAAGGAAAACTTGAATCAATACTCATTGATTAAAATGGAATAAAGAAAGAGCAGCTGCCACTTTTAAACAACATAA AGGAATATCTTTTTTTGTCTCCGTGTAGGAAATCCCATAAGTTCTTATATTTGTTCCAGTTCCCATTTCCTGCCATTGACCAGATAACAT CATTGACTTTCAAATGACTTTTAGAAGTGATAACTCTTAATTTCCTAATAGATACTAGATTGTATTGAATTCTGTTTTAATTATTCTCTA GGTAAGTATGTTTTAGGATTAAATACCTTTTACAGATACTGAAAGTGCCTCCTTTTGTGGTGTAAAAAACAAATTATGGTGCAAAAAGTA ATCACTAGATTGAAATACATGAAGGTTTTTTGCTTTTTGACATACGAAAATGTCAAGAGAAAGGCCAAAGATTTGTACTTTTTCACTTAC AAAGCACTCCTTTTTCCCTTAAACTTCTTTCTGTCAAATTAGATTTAATGAGAGAGTACTATTTTTAAGGAGCTATCTGTTTATGTAGAA TGATTTTGTTAAGAGTAATGTAAACTATTATTGAGTAGAGGCCTAAAGAGGACTGTGCATTTTTGCTATTTAAAGGAATCACAAATGATC ATACTTAAGTGAGCAAAAATGACAAGTTTTACTAGCTAAGTAGAGAAATAAATCTCAAATGCAGCGCTACAATTTTCATTATCTTAAGTA CATTGTACATTTCTACAGAACCTGTGATTATTCTCGCATGATAAGGATGGTACTTGCATATGGTGAATTACTACTGTTGACAGTTTCCGC AGAAATCCTATTTCAGTGGACCAACATTGTGGCATGGCAGCAAATGCCAACATTTTGTGGAATAGCAGCAAATCTACAAGAGACCCTGGT TGGTTTTTCGTTTTGTTTTCTTTGTTTTTTCCCCCTTCTCCTGAATCAGCAGGGATGGAAGGAGGGTAGGGAAGTTATGAATTACTCCTT CCAGTAGTAGCTCTGAAGTGTCACATTTAATATCAGTTTTTTTTAAACATGATTCTAGTTAAATGTAGAAGAGAGAAGAAAGAGGAAGTG TTCACTTTTTTAATACACTGATTTAGAAATTTGATGTCTTATATCAGTAGTTCTGAGGTATTGATAGCTTGCTTTATTTCTGCCTTTACG TTGACAGTGTTGAAGCAGGGTGAATAACTAGGGCATATATTTTTTTTTTTTTTGTAAGCTGTTTCATGATGTTTTCTTTGGAATTTCCGG ATAAGTTCAGGAAAACATTCTGCATGTTGTATCTAGTCTGATGTACTTATCCATCTCATTACAAACAAAAACACACAGACTGCATTTGTA GCTCTGTAATCCTTGAATACGGAAGTAAATTTTCTTCTTTCCTGACTTTGACATTGTAGCTATACTGTTTCCATTTTTGTTTTTACAAAT CCTTTGGGTCTAATTCTGTGAGCCTACCTATAGCACTGGATTAAAATGTCTGCATCATTTCTTTAGTTATCCAGTTAACTTTAAAACTGT TGTAAAAGTGTAAACCAGCCCATGACAGGTTTTTGTACATGTTAAAGAACTTCATTGTTCAGTTTTCATGATTATTGTGTAAGGAAGACT GATGTAGATGTTCTGTGCTGTCCTGGACCATGTTAATTACACTTACGACGTATTTTAGTTCCACATCACAATGATTTGTCCCCAGTGACC CTTTTATCCTTTCTAGGCACATTTCTTGTTGTTGTTGTTGTTGCAGTTCCCCTTTGCATTGTATTGCTTTGACAACTGTAATTTGAATCA GATCTGAAAGAGGTCCAGAATAAAATATATTTTGATATTATGTTGGCTGTGTACATATATAAAACCTTTGATGTCTATGTAGTTTATATA GACTATTTACTAGTCAGGTAAAGAGAGAGGGATGGTATTTCTTGTTTACAGTTTGTTTACATTTTAATTGCTTTTACTTCTCCAGTGTTC TATTGTAGAATAAACCTTTTTTTCCAAGTTAGCCTTCATAACCTATAACACATTCATTCTCTCCCATACTGGTGTTACTGATTAATAACT GCCATCAGAACCCAAACCACTGTTTTTCATAAACGTATTGTTTCCCAAGATATATACTTTAAGCCCATAATAAAATTACAAATTTTACTA TTTTTATTACTTCTTGCAGGAGATAAGATTTTTTTAAATGAAGGGGTTATTTACTATTTTTATTAAAGTATAATAGAGCATCTAATCAGC TAAGGGATTGTAATTTTTAATTCTTTTGAAAAATAAATATTGTATTTAAAAGACGTTATTTCACAGAAGCTGAAAAAGAGACCTTAGATA ACATTTGTTTGGTTAGCCACACGGTTGAGCACAAAACAATGTGTAGATGTGTTGAAGATTAGGGCAGGAGGCTCAACTTCTCGGTGACCT TTTTTTGCTTCACAACAAGCCAATTATAGTTGAATCATTTTCTCTCTTAGCTAGTTGTTACTACAAACTTTATAAGAAAAACAACTAGAC ACCTTCTAGTTTTAATTAATACCAACTCCTTTAGAGTTAGAGACTTTTTAAAAAGAATCATTGAGCATATTTTCTTTTTTTTTTTTTTAA GAATTTACACTCTCTAGGTCTTCTATTTTTCCTGTTTATTTCCTTAAACAGAAATAAATTCAAGCATAGTTTTATGTTTTATTAGAAATA AGCCACTGCAGTTGCTAGAACTGACATGCTTTCATTTTCAAGGGGTTAACTTTTATTGCATGGCATAGATTATTAGTAATATCCTGCATT GTATACTTTTCCAAAAAGGGTTGGACTCCTAAGGATTAGAATCCTTATAAGCTTGAGGGAAAGCTGAAACTAATTTGAACAGTAATAGAA GGGATTATTTTTAATTTCATAGTTAACACTTTACAATGGATTAGATTTATTACCTAGTATAATCCGTAGCAGATCAGATCAAAGTTTACT GTTTTACCAATATATTCATTTGAAAAAATACAGTGGAGGAAAAGACACTTTAGATGGTAGTTTTATGGTGCTTTTCTCTGCTGTACCAAA GTGCTTTGTCATCAATGAAATGTTAACCCTATGCTACTTTTTCTGCATGCTTCTTAAATGTCATCTTAATGCTTAATTGTCCTAACTTGT >In-frame_ENST00000414984_ENST00000430069_TCGA-FA-A4XK-01A_LARS2_chr3_45461221_+_TBL1XR1_chr3_176769514_length(amino acids)=575AA_start in transcript=138_stop in transcript=1865 MASVWQRLGFYASLLKRQLNGGPDVIKWERRVIPGCTRSIYSATGKWTKEYTLQTRKDVEKWWHQRIKEQASKISEADVINPMGWDAFGL PAENAAVERNLHPQSWTQSNIKHMRKQLDRLGLCFSWDRDGTLFDGRPIESLSLIDAVMPDVVQTRQQAYRDKLAQQQAAAAAAAAAAAS QQGSAKNGENTANGEENGAHTIANNHTDMMEVDGDVEIPPNKAVVLRGHESEVFICAWNPVSDLLASGSGDSTARIWNLSENSTSGSTQL VLRHCIREGGQDVPSNKDVTSLDWNSEGTLLATGSYDGFARIWTKDGNLASTLGQHKGPIFALKWNKKGNFILSAGVDKTTIIWDAHTGE AKQQFPFHSAPALDVDWQSNNTFASCSTDMCIHVCKLGQDRPIKTFQGHTNEVNAIKWDPTGNLLASCSDDMTLKIWSMKQDNCVHDLQA HNKEIYTIKWSPTGPGTNNPNANLMLASASFDSTVRLWDVDRGICIHTLTKHQEPVYSVAFSPDGRYLASGSFDKCVHIWNTQTGALVHS -------------------------------------------------------------- >In-frame_ENST00000414984_ENST00000457928_TCGA-FA-A4XK-01A_LARS2_chr3_45461221_+_TBL1XR1_chr3_176769514_length(transcript)=4044nt_BP=525nt ATCGATAAAGTTGCTGTTTTGACAACATGGCGGCGCCCATGGTCCGTGGCCCGGCAGTGCTCGCCTAAAGGTGGAGAACGAGGAGTAGAG GAGCCGCAGGCCAGAGCCTGTGAGCAGGGCCTTCTCACCTTCTGAAGAATGGCTTCTGTTTGGCAGAGATTGGGTTTTTATGCCTCTCTT CTGAAAAGACAGCTAAATGGTGGGCCAGATGTCATCAAGTGGGAAAGGAGAGTAATTCCCGGATGTACCAGAAGCATCTACAGTGCCACG GGAAAGTGGACAAAAGAGTATACATTGCAGACAAGAAAGGATGTTGAGAAATGGTGGCATCAACGAATAAAAGAACAGGCCTCCAAAATT TCAGAAGCTGATGTCATCAACCCCATGGGATGGGATGCTTTTGGATTGCCTGCTGAAAATGCCGCAGTCGAGAGGAATCTACATCCACAA AGTTGGACACAAAGTAATATTAAACACATGAGGAAACAGCTTGATCGTCTGGGCCTGTGTTTCAGCTGGGATAGGGATGGTACCTTGTTT GATGGTCGACCAATAGAGTCTCTGTCCCTGATAGATGCCGTAATGCCTGATGTAGTACAAACAAGACAACAAGCTTATAGAGATAAGCTT GCACAGCAACAGGCAGCAGCTGCTGCAGCTGCCGCAGCTGCAGCCAGCCAACAAGGATCTGCAAAAAATGGAGAAAACACAGCAAATGGG GAGGAGAATGGAGCACATACTATAGCAAATAATCATACTGATATGATGGAAGTGGATGGGGATGTTGAAATCCCTCCTAATAAAGCTGTT GTGTTGCGGGGCCATGAATCTGAAGTTTTTATCTGTGCCTGGAACCCTGTTAGTGATCTCCTAGCATCAGGGTCTGGAGACTCAACAGCA AGAATATGGAATCTTAGTGAGAACAGCACCAGTGGCTCTACACAGTTAGTACTTAGACATTGTATACGAGAAGGAGGGCAAGATGTTCCA AGCAACAAGGATGTCACATCTCTAGATTGGAATAGTGAAGGTACACTTCTAGCAACTGGTTCCTATGATGGGTTTGCCAGAATATGGACT AAAGATGGTAACCTTGCTAGCACCTTAGGGCAGCATAAAGGCCCTATATTTGCATTAAAATGGAATAAGAAAGGAAATTTCATCCTAAGT GCTGGAGTAGACAAGACTACAATTATTTGGGACGCACATACTGGTGAAGCCAAGCAACAGTTTCCTTTTCATTCAGCACCAGCATTGGAT GTTGATTGGCAGAGCAACAACACCTTTGCTTCTTGTAGTACAGATATGTGCATTCATGTCTGTAAATTAGGACAAGACAGACCTATTAAA ACATTCCAAGGACATACGAATGAAGTAAATGCTATCAAATGGGACCCAACTGGCAATCTCTTGGCCTCCTGTTCTGACGACATGACTTTA AAGATATGGAGTATGAAACAAGACAATTGTGTCCATGATTTGCAAGCACATAATAAAGAAATTTATACTATCAAATGGAGTCCAACAGGA CCAGGGACTAATAATCCAAATGCCAACCTTATGTTAGCAAGTGCATCCTTTGATTCTACTGTTAGGTTATGGGATGTAGACCGAGGGATA TGCATCCATACCTTGACAAAACACCAAGAGCCTGTGTACAGTGTAGCTTTCAGTCCTGATGGCAGGTATCTGGCAAGTGGTTCTTTTGAC AAATGTGTACACATCTGGAACACGCAGACAGGTGCTCTAGTTCACAGCTATAGGGGAACAGGTGGAATATTTGAAGTTTGCTGGAATGCA GCAGGAGACAAAGTTGGAGCCAGTGCATCAGATGGTTCAGTTTGTGTATTAGACCTTCGGAAATAGCGCTACTAGTTGGAAGCCATGGAC CGACTATGAATGTGTACATAGCCAAAATGACTGTCCCTGACCCATGTACTGCTATAGTCCCACTTGAACCATGGCCAGTCCACTACAGCC AAATCTAAAAGAAATATATACATACAGTGTATATAAACAAAATTGCACCCTGAAGATGACAGAGTTTTGTCACAGCTTGTGAATTCTGTT CACCAAGTGCTGGAATCTAATCTGCTGTGCCCCTAAAATAGCATTTAGAAGTTTTGGATATGAAAAACAGAAGAGAGAAAAATATACATT ATAAAAGCAGAACATACATGTACCAGTTTTTGGATACTAAATGACAGCCTTGTTTCTCCCCTTTGAATCAGCAGACACCATGGATTATAT TCTTTTTTTCCCTTCAGTAGTGAGCAGTTTGTATGTACAGAGAAAATGGACTTACAAAAACTTGCAGCAGTAGTTTGTTCTTGCTTTAAA ATTTCGTTTTTGGTTTAGATTATGGATGCATGAAGTAAGGGAGTGAATCAGTTTCTTGTTTATATTTTTTTCACCTTTTAAACAAAAAAT TCTTTAAAATATTTTAATGCATTCTTTTGAAGAGGTAGATGTTTGGTACATTTTATGGCTCCCAGAGCATATATTCAGTTGGTGCATGTT GTGGAAGGGGGAATTGGAAATTAAATGAAAACCTATGACTTTGGTCATGTCAATCTGTAAGACACATCAGTAAAAGGGTATTATGCTCTG TTGGTTTTGTTTTTTTGTTTTGCTTTTTTTTTTTTTTTTTCTTTTTTGTTTTTTGGTGATGTGGCTTAAATGCAATAGTTTCTTTTTTGG GACATATTTCTGCCAATTAAAGACTAGAAGGGCACAACTTTTTTTTTAATTACCATAGAGAAGATACATTAAAAAAAATCTTCTGATGTT TTGTAGCCATAACTAAATTATGGTAAAAATGTGCACTATTGTGAAAAGGAGCAACGTAGTTTTGGGTTTTTTGTTGTTTGTTTGTTTTGC TTTGTTTTTTAAGAGATTAAAATGTTTCTGGATAAGGATTAGCTTCTCGAAGTGTCCATCATTCTGTGTAGAAGCTTAAATATGTAATGT AACCAAACTCCAGTATTAAAAATCTCTCATGTTGTTTTCTTTATACAAAGCAAGATAACGGCATATAACACTGCCATTACATGGCAAAAT GTTTGCTACCTTAGTTTAAAAAACAATCTCAAACAAAAGACTTGCTTCAAGGTGTTTTTAAATAGCAGTGATTCAGAATTTTTTTTAATG AAAGTATAATTGCACTAACCTTCTTCCTGCTGCTCTGATTCTGCATTTGTGGTACTTGTGACTACGTTTTTTCAAATATAGATAGATTTA AGCTGCTAATTTTTTTTTTTTTAGTAATCACTACTATATCATGTCTTTTACTCTGTTTATAATATCAAGTATTTTCTTAAAGATATAGAT ATTAAACCTTGTGCTCATGCAACTTAGAGTAACATATACAGACAAATGATTGCATGAGGCCATGTTTATATGTGTGACTAATAAGGCTTG TCATGATTAACATAATCCAGGTATGTCATTTCTGAAGAGAATAGTCATCAAATTTATATCTCGAAGATTTTAATTAAGGAATTGCTTATT GTTGAGCTTAGCAAATTAATAACACTATTTCTGTCACTAATTATTTTGAGGCCTTTTAGTACTAAAATTTTAACCTGTGTTCTAAGTAGA AACTGATTTAACCCAAGTAATGCAGCTTTGATTGATTTCAGCATTCGTTGCTTTGCTATTTTTACAAAACAGCATTGATTGAAGCAAGTC TTGGTTTTACTAAGGTAGGGTAGCATTTGCTATTGGTAAAGAGAATAAATACACTTAATTTCACAATACATTGTTATATGTACCCCAGTT GTTGTTAGTGGGGACTATGATACTGTAATAATATTTTTAAAAATTTACATCAAGAGAGGCAGTCATTCACGATGGTTTTGTGCCAGCTCT TTTTAGGGTTTTGGATCACATTAGAGATATTTAGAACATATTACCCTGTGACTTACGTAGGAAACCTAATATGCTGAGTATCTGGCACTT >In-frame_ENST00000414984_ENST00000457928_TCGA-FA-A4XK-01A_LARS2_chr3_45461221_+_TBL1XR1_chr3_176769514_length(amino acids)=575AA_start in transcript=138_stop in transcript=1865 MASVWQRLGFYASLLKRQLNGGPDVIKWERRVIPGCTRSIYSATGKWTKEYTLQTRKDVEKWWHQRIKEQASKISEADVINPMGWDAFGL PAENAAVERNLHPQSWTQSNIKHMRKQLDRLGLCFSWDRDGTLFDGRPIESLSLIDAVMPDVVQTRQQAYRDKLAQQQAAAAAAAAAAAS QQGSAKNGENTANGEENGAHTIANNHTDMMEVDGDVEIPPNKAVVLRGHESEVFICAWNPVSDLLASGSGDSTARIWNLSENSTSGSTQL VLRHCIREGGQDVPSNKDVTSLDWNSEGTLLATGSYDGFARIWTKDGNLASTLGQHKGPIFALKWNKKGNFILSAGVDKTTIIWDAHTGE AKQQFPFHSAPALDVDWQSNNTFASCSTDMCIHVCKLGQDRPIKTFQGHTNEVNAIKWDPTGNLLASCSDDMTLKIWSMKQDNCVHDLQA HNKEIYTIKWSPTGPGTNNPNANLMLASASFDSTVRLWDVDRGICIHTLTKHQEPVYSVAFSPDGRYLASGSFDKCVHIWNTQTGALVHS -------------------------------------------------------------- |
Top |
Fusion Gene PPI Analysis for LARS2-TBL1XR1 |
Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in |
Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
Hgene | Hgene's interactors | Tgene | Tgene's interactors |
- Retained PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
- Lost PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
- Retained PPIs, but lost function due to frame-shift fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
Top |
Related Drugs for LARS2-TBL1XR1 |
Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.8 2021-05-08) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
Top |
Related Diseases for LARS2-TBL1XR1 |
Diseases associated with fusion partners. (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Hgene | LARS2 | C0685838 | Gonadal dysgenesis XX type deafness | 10 | CLINGEN;GENOMICS_ENGLAND;ORPHANET |
Hgene | LARS2 | C3809105 | PERRAULT SYNDROME 4 | 3 | GENOMICS_ENGLAND;UNIPROT |
Hgene | LARS2 | C0005586 | Bipolar Disorder | 1 | PSYGENET |
Hgene | LARS2 | C0036341 | Schizophrenia | 1 | PSYGENET |
Hgene | LARS2 | C4310761 | HYDROPS, LACTIC ACIDOSIS, AND SIDEROBLASTIC ANEMIA | 1 | CTD_human;GENOMICS_ENGLAND;ORPHANET;UNIPROT |
Tgene | TBL1XR1 | C1865644 | Plantar Lipomatosis, Unusual Facies, and Developmental Delay | 5 | CTD_human;GENOMICS_ENGLAND;ORPHANET;UNIPROT |
Tgene | TBL1XR1 | C4310784 | MENTAL RETARDATION, AUTOSOMAL DOMINANT 41 | 5 | CTD_human;GENOMICS_ENGLAND;UNIPROT |
Tgene | TBL1XR1 | C0004352 | Autistic Disorder | 1 | GENOMICS_ENGLAND |
Tgene | TBL1XR1 | C0023487 | Acute Promyelocytic Leukemia | 1 | ORPHANET |
Tgene | TBL1XR1 | C0033578 | Prostatic Neoplasms | 1 | CTD_human |
Tgene | TBL1XR1 | C0345967 | Malignant mesothelioma | 1 | CTD_human |
Tgene | TBL1XR1 | C0376358 | Malignant neoplasm of prostate | 1 | CTD_human |
Tgene | TBL1XR1 | C1535926 | Neurodevelopmental Disorders | 1 | CTD_human |