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Fusion Gene Summary | |
Fusion Gene ORF analysis | |
Fusion Genomic Features | |
Fusion Protein Features | |
Fusion Gene Sequence | |
Fusion Gene PPI analysis | |
Related Drugs | |
Related Diseases |
Fusion gene:LIMD1-LARS2 (FusionGDB2 ID:44464) |
Fusion Gene Summary for LIMD1-LARS2 |
Fusion gene summary |
Fusion gene information | Fusion gene name: LIMD1-LARS2 | Fusion gene ID: 44464 | Hgene | Tgene | Gene symbol | LIMD1 | LARS2 | Gene ID | 8994 | 23395 |
Gene name | LIM domains containing 1 | leucyl-tRNA synthetase 2, mitochondrial | |
Synonyms | - | HLASA|LEURS|PRLTS4|mtLeuRS | |
Cytomap | 3p21.31 | 3p21.31 | |
Type of gene | protein-coding | protein-coding | |
Description | LIM domain-containing protein 1 | probable leucine--tRNA ligase, mitochondrialleucine tRNA ligase 2, mitochondrialleucine tRNA ligase 2, mitocondrialleucine translaseprobable leucyl-tRNA synthetase, mitochondrial | |
Modification date | 20200313 | 20200313 | |
UniProtAcc | . | Q15031 | |
Ensembl transtripts involved in fusion gene | ENST00000465039, ENST00000440097, ENST00000273317, | ENST00000265537, ENST00000415258, ENST00000414984, ENST00000467936, | |
Fusion gene scores | * DoF score | 3 X 4 X 4=48 | 5 X 7 X 6=210 |
# samples | 5 | 7 | |
** MAII score | log2(5/48*10)=0.0588936890535686 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | log2(7/210*10)=-1.58496250072116 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
Context | PubMed: LIMD1 [Title/Abstract] AND LARS2 [Title/Abstract] AND fusion [Title/Abstract] | ||
Most frequent breakpoint | LARS2(45565600)-LIMD1(45677642), # samples:2 LIMD1(45707209)-LARS2(45565489), # samples:2 | ||
Anticipated loss of major functional domain due to fusion event. | LIMD1-LARS2 seems lost the major protein functional domain in Hgene partner, which is a tumor suppressor due to the frame-shifted ORF. LIMD1-LARS2 seems lost the major protein functional domain in Tgene partner, which is a essential gene due to the frame-shifted ORF. |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
Partner | Gene | GO ID | GO term | PubMed ID |
Hgene | LIMD1 | GO:0001666 | response to hypoxia | 22286099 |
Hgene | LIMD1 | GO:0016310 | phosphorylation | 18439753 |
Hgene | LIMD1 | GO:0035331 | negative regulation of hippo signaling | 20303269 |
Hgene | LIMD1 | GO:0045892 | negative regulation of transcription, DNA-templated | 15542589 |
Tgene | LARS2 | GO:0006429 | leucyl-tRNA aminoacylation | 10684970 |
Fusion gene breakpoints across LIMD1 (5'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
Fusion gene breakpoints across LARS2 (3'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Source | Disease | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
ChimerDB4 | LUAD | TCGA-78-7147-01A | LIMD1 | chr3 | 45707209 | + | LARS2 | chr3 | 45565489 | + |
ChimerDB4 | LUSC | TCGA-68-8251-01A | LIMD1 | chr3 | 45637779 | - | LARS2 | chr3 | 45488383 | + |
ChimerDB4 | LUAD | TCGA-78-7147-01A | LIMD1 | chr3 | 45707209 | - | LARS2 | chr3 | 45565489 | + |
ChimerDB4 | STAD | TCGA-BR-4357-01A | LIMD1 | chr3 | 45637779 | - | LARS2 | chr3 | 45557586 | + |
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Fusion Gene ORF analysis for LIMD1-LARS2 |
Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
3UTR-3CDS | ENST00000465039 | ENST00000265537 | LIMD1 | chr3 | 45707209 | + | LARS2 | chr3 | 45565489 | + |
3UTR-3CDS | ENST00000465039 | ENST00000415258 | LIMD1 | chr3 | 45707209 | + | LARS2 | chr3 | 45565489 | + |
3UTR-3CDS | ENST00000465039 | ENST00000414984 | LIMD1 | chr3 | 45707209 | + | LARS2 | chr3 | 45565489 | + |
3UTR-3UTR | ENST00000465039 | ENST00000467936 | LIMD1 | chr3 | 45707209 | + | LARS2 | chr3 | 45565489 | + |
In-frame | ENST00000440097 | ENST00000265537 | LIMD1 | chr3 | 45707209 | + | LARS2 | chr3 | 45565489 | + |
In-frame | ENST00000440097 | ENST00000415258 | LIMD1 | chr3 | 45707209 | + | LARS2 | chr3 | 45565489 | + |
In-frame | ENST00000440097 | ENST00000414984 | LIMD1 | chr3 | 45707209 | + | LARS2 | chr3 | 45565489 | + |
5CDS-3UTR | ENST00000440097 | ENST00000467936 | LIMD1 | chr3 | 45707209 | + | LARS2 | chr3 | 45565489 | + |
In-frame | ENST00000273317 | ENST00000265537 | LIMD1 | chr3 | 45707209 | + | LARS2 | chr3 | 45565489 | + |
In-frame | ENST00000273317 | ENST00000415258 | LIMD1 | chr3 | 45707209 | + | LARS2 | chr3 | 45565489 | + |
In-frame | ENST00000273317 | ENST00000414984 | LIMD1 | chr3 | 45707209 | + | LARS2 | chr3 | 45565489 | + |
5CDS-3UTR | ENST00000273317 | ENST00000467936 | LIMD1 | chr3 | 45707209 | + | LARS2 | chr3 | 45565489 | + |
intron-3CDS | ENST00000465039 | ENST00000265537 | LIMD1 | chr3 | 45637779 | - | LARS2 | chr3 | 45488383 | + |
intron-3CDS | ENST00000465039 | ENST00000415258 | LIMD1 | chr3 | 45637779 | - | LARS2 | chr3 | 45488383 | + |
intron-3CDS | ENST00000465039 | ENST00000414984 | LIMD1 | chr3 | 45637779 | - | LARS2 | chr3 | 45488383 | + |
intron-intron | ENST00000465039 | ENST00000467936 | LIMD1 | chr3 | 45637779 | - | LARS2 | chr3 | 45488383 | + |
Frame-shift | ENST00000440097 | ENST00000265537 | LIMD1 | chr3 | 45637779 | - | LARS2 | chr3 | 45488383 | + |
Frame-shift | ENST00000440097 | ENST00000415258 | LIMD1 | chr3 | 45637779 | - | LARS2 | chr3 | 45488383 | + |
Frame-shift | ENST00000440097 | ENST00000414984 | LIMD1 | chr3 | 45637779 | - | LARS2 | chr3 | 45488383 | + |
5CDS-intron | ENST00000440097 | ENST00000467936 | LIMD1 | chr3 | 45637779 | - | LARS2 | chr3 | 45488383 | + |
Frame-shift | ENST00000273317 | ENST00000265537 | LIMD1 | chr3 | 45637779 | - | LARS2 | chr3 | 45488383 | + |
Frame-shift | ENST00000273317 | ENST00000415258 | LIMD1 | chr3 | 45637779 | - | LARS2 | chr3 | 45488383 | + |
Frame-shift | ENST00000273317 | ENST00000414984 | LIMD1 | chr3 | 45637779 | - | LARS2 | chr3 | 45488383 | + |
5CDS-intron | ENST00000273317 | ENST00000467936 | LIMD1 | chr3 | 45637779 | - | LARS2 | chr3 | 45488383 | + |
intron-3CDS | ENST00000465039 | ENST00000265537 | LIMD1 | chr3 | 45637779 | - | LARS2 | chr3 | 45557586 | + |
intron-3CDS | ENST00000465039 | ENST00000415258 | LIMD1 | chr3 | 45637779 | - | LARS2 | chr3 | 45557586 | + |
intron-3CDS | ENST00000465039 | ENST00000414984 | LIMD1 | chr3 | 45637779 | - | LARS2 | chr3 | 45557586 | + |
intron-3UTR | ENST00000465039 | ENST00000467936 | LIMD1 | chr3 | 45637779 | - | LARS2 | chr3 | 45557586 | + |
In-frame | ENST00000440097 | ENST00000265537 | LIMD1 | chr3 | 45637779 | - | LARS2 | chr3 | 45557586 | + |
In-frame | ENST00000440097 | ENST00000415258 | LIMD1 | chr3 | 45637779 | - | LARS2 | chr3 | 45557586 | + |
In-frame | ENST00000440097 | ENST00000414984 | LIMD1 | chr3 | 45637779 | - | LARS2 | chr3 | 45557586 | + |
5CDS-3UTR | ENST00000440097 | ENST00000467936 | LIMD1 | chr3 | 45637779 | - | LARS2 | chr3 | 45557586 | + |
In-frame | ENST00000273317 | ENST00000265537 | LIMD1 | chr3 | 45637779 | - | LARS2 | chr3 | 45557586 | + |
In-frame | ENST00000273317 | ENST00000415258 | LIMD1 | chr3 | 45637779 | - | LARS2 | chr3 | 45557586 | + |
In-frame | ENST00000273317 | ENST00000414984 | LIMD1 | chr3 | 45637779 | - | LARS2 | chr3 | 45557586 | + |
5CDS-3UTR | ENST00000273317 | ENST00000467936 | LIMD1 | chr3 | 45637779 | - | LARS2 | chr3 | 45557586 | + |
ORFfinder result based on the fusion transcript sequence of in-frame fusion genes. |
Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | Seq length (transcript) | BP loci (transcript) | Predicted start (transcript) | Predicted stop (transcript) | Seq length (amino acids) |
ENST00000440097 | LIMD1 | chr3 | 45707209 | + | ENST00000265537 | LARS2 | chr3 | 45565489 | + | 3861 | 2134 | 556 | 2553 | 665 |
ENST00000440097 | LIMD1 | chr3 | 45707209 | + | ENST00000415258 | LARS2 | chr3 | 45565489 | + | 4445 | 2134 | 556 | 2553 | 665 |
ENST00000440097 | LIMD1 | chr3 | 45707209 | + | ENST00000414984 | LARS2 | chr3 | 45565489 | + | 2633 | 2134 | 556 | 2553 | 665 |
ENST00000273317 | LIMD1 | chr3 | 45707209 | + | ENST00000265537 | LARS2 | chr3 | 45565489 | + | 3326 | 1599 | 21 | 2018 | 665 |
ENST00000273317 | LIMD1 | chr3 | 45707209 | + | ENST00000415258 | LARS2 | chr3 | 45565489 | + | 3910 | 1599 | 21 | 2018 | 665 |
ENST00000273317 | LIMD1 | chr3 | 45707209 | + | ENST00000414984 | LARS2 | chr3 | 45565489 | + | 2098 | 1599 | 21 | 2018 | 665 |
DeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated. |
Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | No-coding score | Coding score |
ENST00000440097 | ENST00000265537 | LIMD1 | chr3 | 45707209 | + | LARS2 | chr3 | 45565489 | + | 0.016651342 | 0.98334867 |
ENST00000440097 | ENST00000415258 | LIMD1 | chr3 | 45707209 | + | LARS2 | chr3 | 45565489 | + | 0.013260135 | 0.9867399 |
ENST00000440097 | ENST00000414984 | LIMD1 | chr3 | 45707209 | + | LARS2 | chr3 | 45565489 | + | 0.016491702 | 0.98350835 |
ENST00000273317 | ENST00000265537 | LIMD1 | chr3 | 45707209 | + | LARS2 | chr3 | 45565489 | + | 0.021313116 | 0.97868687 |
ENST00000273317 | ENST00000415258 | LIMD1 | chr3 | 45707209 | + | LARS2 | chr3 | 45565489 | + | 0.015787838 | 0.9842122 |
ENST00000273317 | ENST00000414984 | LIMD1 | chr3 | 45707209 | + | LARS2 | chr3 | 45565489 | + | 0.02617225 | 0.9738278 |
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Fusion Genomic Features for LIMD1-LARS2 |
FusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints. |
Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | 1-p | p (fusion gene breakpoint) |
LIMD1 | chr3 | 45707209 | + | LARS2 | chr3 | 45565488 | + | 0.000104617 | 0.99989533 |
LIMD1 | chr3 | 45707209 | + | LARS2 | chr3 | 45565488 | + | 0.000104617 | 0.99989533 |
Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page. |
Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page. |
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Fusion Protein Features for LIMD1-LARS2 |
Go to FGviewer for the breakpoints of chr3:45707209-chr3:45565489 - FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels. |
Main function of each fusion partner protein. (from UniProt) |
Hgene | Tgene |
. | LARS2 |
FUNCTION: Might normally function as a transcriptional repressor. EWS-fusion-proteins (EFPS) may play a role in the tumorigenic process. They may disturb gene expression by mimicking, or interfering with the normal function of CTD-POLII within the transcription initiation complex. They may also contribute to an aberrant activation of the fusion protein target genes. |
Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | LIMD1 | chr3:45637779 | chr3:45557586 | ENST00000273317 | - | 1 | 8 | 54_134 | 469.3333333333333 | 677.0 | Region | Note=Mediates nuclear export |
Hgene | LIMD1 | chr3:45707209 | chr3:45565489 | ENST00000273317 | + | 3 | 8 | 54_134 | 526.0 | 677.0 | Region | Note=Mediates nuclear export |
Tgene | LARS2 | chr3:45637779 | chr3:45557586 | ENST00000265537 | 15 | 22 | 639_643 | 620.3333333333334 | 904.0 | Motif | Note='KMSKS' region | |
Tgene | LARS2 | chr3:45637779 | chr3:45557586 | ENST00000415258 | 14 | 21 | 639_643 | 620.3333333333334 | 904.0 | Motif | Note='KMSKS' region |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | LIMD1 | chr3:45637779 | chr3:45557586 | ENST00000273317 | - | 1 | 8 | 470_531 | 469.3333333333333 | 677.0 | Domain | LIM zinc-binding 1 |
Hgene | LIMD1 | chr3:45637779 | chr3:45557586 | ENST00000273317 | - | 1 | 8 | 535_595 | 469.3333333333333 | 677.0 | Domain | LIM zinc-binding 2 |
Hgene | LIMD1 | chr3:45637779 | chr3:45557586 | ENST00000273317 | - | 1 | 8 | 595_664 | 469.3333333333333 | 677.0 | Domain | LIM zinc-binding 3 |
Hgene | LIMD1 | chr3:45707209 | chr3:45565489 | ENST00000273317 | + | 3 | 8 | 470_531 | 526.0 | 677.0 | Domain | LIM zinc-binding 1 |
Hgene | LIMD1 | chr3:45707209 | chr3:45565489 | ENST00000273317 | + | 3 | 8 | 535_595 | 526.0 | 677.0 | Domain | LIM zinc-binding 2 |
Hgene | LIMD1 | chr3:45707209 | chr3:45565489 | ENST00000273317 | + | 3 | 8 | 595_664 | 526.0 | 677.0 | Domain | LIM zinc-binding 3 |
Hgene | LIMD1 | chr3:45637779 | chr3:45557586 | ENST00000273317 | - | 1 | 8 | 472_676 | 469.3333333333333 | 677.0 | Region | Note=Necessary for nuclear localization |
Hgene | LIMD1 | chr3:45707209 | chr3:45565489 | ENST00000273317 | + | 3 | 8 | 472_676 | 526.0 | 677.0 | Region | Note=Necessary for nuclear localization |
Tgene | LARS2 | chr3:45637779 | chr3:45557586 | ENST00000265537 | 15 | 22 | 92_102 | 620.3333333333334 | 904.0 | Motif | Note='HIGH' region | |
Tgene | LARS2 | chr3:45637779 | chr3:45557586 | ENST00000415258 | 14 | 21 | 92_102 | 620.3333333333334 | 904.0 | Motif | Note='HIGH' region | |
Tgene | LARS2 | chr3:45707209 | chr3:45565489 | ENST00000265537 | 18 | 22 | 639_643 | 764.0 | 904.0 | Motif | Note='KMSKS' region | |
Tgene | LARS2 | chr3:45707209 | chr3:45565489 | ENST00000265537 | 18 | 22 | 92_102 | 764.0 | 904.0 | Motif | Note='HIGH' region | |
Tgene | LARS2 | chr3:45707209 | chr3:45565489 | ENST00000415258 | 17 | 21 | 639_643 | 764.0 | 904.0 | Motif | Note='KMSKS' region | |
Tgene | LARS2 | chr3:45707209 | chr3:45565489 | ENST00000415258 | 17 | 21 | 92_102 | 764.0 | 904.0 | Motif | Note='HIGH' region |
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Fusion Gene Sequence for LIMD1-LARS2 |
For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones. |
>In-frame_ENST00000440097_ENST00000265537_TCGA-78-7147-01A_LIMD1_chr3_45707209_+_LARS2_chr3_45565489_length(transcript)=3861nt_BP=2134nt GCAGCGGAGGACCCAGCGCCTGGAACGTACCTGCGCCTCAGCCGCCGCGCGTTTGCTCCGGCCCGACTCGCGGCCTCGGCGCCCTCCCGG CCGATTCAGCTTCACCCGGCCCAGTCGGCTGCTGCCTTGCTGTGAGTTTCCGTGTTTGGTTGCCTAAGGAGGATGTGATTTTACTTTTTT GCTGTTTTCTTTTTCCTTTTATAATTTGAAGAGGAGAAAAGAACTCCGCTGAGCAGGCCCGGGACGGCGAAGTGCCACCAGCTACCCCAA CAAGGACGTCTCCAGGGGAAAGGGAGTTGGAAGCAAACTTGGTCCAGCTGGCGTTGAGGTCTCAACTTCGGCTGGACTCTTAAATCCTGG GGTCATGCCCTTCACGCTAGGCAGGTGGAAGTCTTTACTTGTACTGGGCCGGACTTGAGCCCCGACCCTTCGCCAGCATCTCCCCGCTGC CCTCAACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACGGCACCTGGGCTAGGCCCG GACACCTGTCTGCAGCATGGATAAGTATGACGACCTGGGCCTGGAGGCCAGTAAATTCATCGAGGACCTGAACATGTATGAGGCCTCTAA GGATGGGCTCTTCCGAGTGGACAAGGGTGCAGGCAACAACCCCGAGTTTGAGGAAACTCGCAGGGTGTTCGCCACCAAGATGGCCAAAAT CCACCTCCAGCAGCAGCAGCAGCAGCTCCTGCAGGAGGAGACTCTGCCCAGGGGGAGTAGAGGCCCTGTCAATGGAGGGGGCCGCCTGGG CCCACAGGCCCGTTGGGAAGTTGTGGGCAGCAAGCTGACTGTGGATGGTGCTGCCAAGCCTCCTCTTGCTGCCTCGACAGGGGCACCTGG GGCAGTCACCACCCTCGCTGCTGGGCAGCCCCCGTACCCACCGCAGGAGCAGAGATCCAGGCCATACCTGCATGGCACGAGGCATGGCAG CCAGGACTGTGGTTCCAGGGAGAGCCTGGCGACTTCTGAGATGTCTGCTTTCCACCAGCCAGGCCCCTGTGAGGATCCTTCCTGCCTCAC TCATGGAGACTATTATGACAACCTCTCCTTGGCAAGCCCAAAGTGGGGTGACAAACCAGGAGTGTCCCCCAGCATCGGCCTGAGTGTAGG GAGTGGGTGGCCTAGCTCCCCGGGGAGTGACCCACCACTGCCCAAACCCTGCGGGGACCATCCCCTAAATCACCGACAGCTCTCCCTGAG CTCCAGCAGGTCTTCTGAGGGTAGCCTCGGTGGTCAGAATAGTGGCATTGGTGGCCGCAGCAGCGAGAAGCCAACAGGCCTTTGGTCCAC TGCCTCCTCCCAGCGGGTGAGCCCTGGCCTGCCTTCCCCAAACTTGGAGAACGGAGCACCAGCTGTGGGGCCTGTTCAGCCCAGGACCCC TTCTGTGTCAGCACCCTTGGCCCTGAGCTGCCCCAGGCAAGGAGGTCTTCCAAGATCAAACTCGGGGCTGGGGGGTGAGGTTTCAGGTGT GATGTCCAAACCCAATGTGGACCCCCAACCCTGGTTCCAGGATGGGCCCAAATCTTACCTTTCCAGTTCTGCCCCGTCATCCTCGCCAGC TGGTCTGGACGGTTCACAGCAGGGTGCGGTCCCTGGGCTGGGGCCGAAGCCTGGCTGCACAGACCTTGGCACTGGTCCCAAGCTCAGCCC CACCAGTCTTGTCCATCCAGTGATGTCCACCCTGCCTGAGTTATCTTGTAAAGAGGGTCCCCTGGGCTGGTCTTCTGATGGTAGCCTGGG ATCTGTGCTCCTGGACAGCCCCAGCTCCCCTAGGGTAAGGCTGCCCTGCCAGCCCCTCGTCCCAGGTCCTGAGCTGAGACCCTCTGCTGC TGAGTTGAAATTAGAAGCCCTCACCCAACGTCTGGAGCGAGAGATGGATGCTCACCCGAAGGCTGATTACTTTGGAGCCTGTGTGAAATG CAGCAAAGGGGTGTTTGGGGCTGGCCAGGCCTGTCAGGCCATGGGGAACCTCTACCATGACACATGCTTCACCTGTGCAGCTTGCAGCCG GAAGCTGAGAGGAAAAGCCTTTTATTTTGTCAACGGCAAAGTGTTTTGTGAAGAAGACTTCCTGCAAGCCTCTCAGAGCGTCATTCTCCA CAGCCCCGAGTTTGAGGATGCTTTGTGTGCCCTGATGGTAATGGCTGCTCCACTGGCCCCTCATGTAACCTCAGAGATCTGGGCAGGCCT GGCGCTGGTGCCGAGGAAGCTCTGTGCCCACTACACTTGGGATGCCAGTGTGCTGCTCCAGGCATGGCCTGCTGTGGACCCGGAGTTCCT GCAGCAGCCTGAGGTTGTCCAGATGGCAGTTCTGATCAACAATAAAGCTTGTGGCAAAATTCCTGTGCCCCAACAAGTTGCCCGGGACCA GGACAAAGTCCACGAATTTGTTCTTCAAAGCGAGCTGGGTGTCAGGCTTTTGCAAGGACGAAGCATCAAGAAGTCCTTCCTTTCCCCGAG AACTGCCCTCATCAACTTCCTGGTGCAAGATTGACAGCCAGGAGGCTGCAGCTACCACGAGGGCCTCTGAGGAACCTCCTTCCAGGCCTG GGATGAGGGGGCGATGTCTGCTGGCCCAGGGGAAGGGAAAAGACAAATGTCTTGACTGTTGACCTCGGTCCTGTGGCAGACTGCAGTCAA CAGTGTGCCTCTGTAGTGTGGCCTGGTGCTGGGGTGAAGGTGAGCTGGGCAAAGGAGAAATATGAGCTACTGAGGAGGGGGTTGGACATC CTGCCCCTCACCCCCCACCCACACTGCAGGTAGAGGAGGCCATCTGATCCCATGGGAAGCCATCAGAGACACTGCTGGTGGGAGCAGGAA GGAGCAGTGCCCCTCGAGCAGCCAGGAAGCCTGCGGATCTGGGAAATGGCTCTGCCTTAGGCACTTCTCGGGAATTTGAGGCCAGCCTGA GGAACTGCAGGACTCAGGTGCAATGTGCCAGCCACTTGGAACTGCTAACTGAGCCTCCAGATGGTAGTGAATGGTCTCTTTGCCTTCAGG CTGGATGAGGAAGTCATTTAGGAAATGTTCAAATAACCAATATGTGGAAATGGACACAGGGATCTTCTGAAGTTGCTTTGAATCAAAAGG CAGGCAGTGCTGGTTCCTCTGCCTGTGTCCCCACCACTCCCCAGCTCTGTCATGCAGGCCTGTCCTCCCCAACCCCAGCTGGATGTGCCT CCCAGGCCTGCTGTGGTTCTGACACACAGGATCCCAGGCAAGGCACCACTTCCTCACATGAATGAGGAGCAGCAAGTCATAACCACTCCC TTGGGTATACAATTTGCTGTGTAGTGAAGTGGAACCAGGCTCAGGCTGCTGGTCCCAACCTCAGAGCCCCACCGCAGCCCAGTAGGGATG CAGCACGCCCCAGAGGGCTCATGTGGGCCCCAGATGGCAATGCCACCATTGTTGATGTGACTCCAGAGCCAGTTATTAGGAAGAGCAAGC TCACCACAGAGGAGTGGAACTGAGGCCCCCCAGATGTTGCCTCCGGTGTCCAAGCCACAGCGGTCTGGCTGTTGGGAAGATGGCCAGGAA TGGACTCATACCATTGGCACATTAGGCTAATCCTGGTTTTATGTGAAGTCAGCAATTAAGTGTTCCCACTAGAACTGACCTAAGCCACTG ATTAATATTTAATGAGGGAAGGTAGGGGAGAATCTAGCCATTTTATAATGCCAGAAATCTATATATGTTATCTGATGCCATTTTTCTGAA >In-frame_ENST00000440097_ENST00000265537_TCGA-78-7147-01A_LIMD1_chr3_45707209_+_LARS2_chr3_45565489_length(amino acids)=665AA_start in transcript=556_stop in transcript=2553 MDKYDDLGLEASKFIEDLNMYEASKDGLFRVDKGAGNNPEFEETRRVFATKMAKIHLQQQQQQLLQEETLPRGSRGPVNGGGRLGPQARW EVVGSKLTVDGAAKPPLAASTGAPGAVTTLAAGQPPYPPQEQRSRPYLHGTRHGSQDCGSRESLATSEMSAFHQPGPCEDPSCLTHGDYY DNLSLASPKWGDKPGVSPSIGLSVGSGWPSSPGSDPPLPKPCGDHPLNHRQLSLSSSRSSEGSLGGQNSGIGGRSSEKPTGLWSTASSQR VSPGLPSPNLENGAPAVGPVQPRTPSVSAPLALSCPRQGGLPRSNSGLGGEVSGVMSKPNVDPQPWFQDGPKSYLSSSAPSSSPAGLDGS QQGAVPGLGPKPGCTDLGTGPKLSPTSLVHPVMSTLPELSCKEGPLGWSSDGSLGSVLLDSPSSPRVRLPCQPLVPGPELRPSAAELKLE ALTQRLEREMDAHPKADYFGACVKCSKGVFGAGQACQAMGNLYHDTCFTCAACSRKLRGKAFYFVNGKVFCEEDFLQASQSVILHSPEFE DALCALMVMAAPLAPHVTSEIWAGLALVPRKLCAHYTWDASVLLQAWPAVDPEFLQQPEVVQMAVLINNKACGKIPVPQQVARDQDKVHE -------------------------------------------------------------- >In-frame_ENST00000440097_ENST00000415258_TCGA-78-7147-01A_LIMD1_chr3_45707209_+_LARS2_chr3_45565489_length(transcript)=4445nt_BP=2134nt GCAGCGGAGGACCCAGCGCCTGGAACGTACCTGCGCCTCAGCCGCCGCGCGTTTGCTCCGGCCCGACTCGCGGCCTCGGCGCCCTCCCGG CCGATTCAGCTTCACCCGGCCCAGTCGGCTGCTGCCTTGCTGTGAGTTTCCGTGTTTGGTTGCCTAAGGAGGATGTGATTTTACTTTTTT GCTGTTTTCTTTTTCCTTTTATAATTTGAAGAGGAGAAAAGAACTCCGCTGAGCAGGCCCGGGACGGCGAAGTGCCACCAGCTACCCCAA CAAGGACGTCTCCAGGGGAAAGGGAGTTGGAAGCAAACTTGGTCCAGCTGGCGTTGAGGTCTCAACTTCGGCTGGACTCTTAAATCCTGG GGTCATGCCCTTCACGCTAGGCAGGTGGAAGTCTTTACTTGTACTGGGCCGGACTTGAGCCCCGACCCTTCGCCAGCATCTCCCCGCTGC CCTCAACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACGGCACCTGGGCTAGGCCCG GACACCTGTCTGCAGCATGGATAAGTATGACGACCTGGGCCTGGAGGCCAGTAAATTCATCGAGGACCTGAACATGTATGAGGCCTCTAA GGATGGGCTCTTCCGAGTGGACAAGGGTGCAGGCAACAACCCCGAGTTTGAGGAAACTCGCAGGGTGTTCGCCACCAAGATGGCCAAAAT CCACCTCCAGCAGCAGCAGCAGCAGCTCCTGCAGGAGGAGACTCTGCCCAGGGGGAGTAGAGGCCCTGTCAATGGAGGGGGCCGCCTGGG CCCACAGGCCCGTTGGGAAGTTGTGGGCAGCAAGCTGACTGTGGATGGTGCTGCCAAGCCTCCTCTTGCTGCCTCGACAGGGGCACCTGG GGCAGTCACCACCCTCGCTGCTGGGCAGCCCCCGTACCCACCGCAGGAGCAGAGATCCAGGCCATACCTGCATGGCACGAGGCATGGCAG CCAGGACTGTGGTTCCAGGGAGAGCCTGGCGACTTCTGAGATGTCTGCTTTCCACCAGCCAGGCCCCTGTGAGGATCCTTCCTGCCTCAC TCATGGAGACTATTATGACAACCTCTCCTTGGCAAGCCCAAAGTGGGGTGACAAACCAGGAGTGTCCCCCAGCATCGGCCTGAGTGTAGG GAGTGGGTGGCCTAGCTCCCCGGGGAGTGACCCACCACTGCCCAAACCCTGCGGGGACCATCCCCTAAATCACCGACAGCTCTCCCTGAG CTCCAGCAGGTCTTCTGAGGGTAGCCTCGGTGGTCAGAATAGTGGCATTGGTGGCCGCAGCAGCGAGAAGCCAACAGGCCTTTGGTCCAC TGCCTCCTCCCAGCGGGTGAGCCCTGGCCTGCCTTCCCCAAACTTGGAGAACGGAGCACCAGCTGTGGGGCCTGTTCAGCCCAGGACCCC TTCTGTGTCAGCACCCTTGGCCCTGAGCTGCCCCAGGCAAGGAGGTCTTCCAAGATCAAACTCGGGGCTGGGGGGTGAGGTTTCAGGTGT GATGTCCAAACCCAATGTGGACCCCCAACCCTGGTTCCAGGATGGGCCCAAATCTTACCTTTCCAGTTCTGCCCCGTCATCCTCGCCAGC TGGTCTGGACGGTTCACAGCAGGGTGCGGTCCCTGGGCTGGGGCCGAAGCCTGGCTGCACAGACCTTGGCACTGGTCCCAAGCTCAGCCC CACCAGTCTTGTCCATCCAGTGATGTCCACCCTGCCTGAGTTATCTTGTAAAGAGGGTCCCCTGGGCTGGTCTTCTGATGGTAGCCTGGG ATCTGTGCTCCTGGACAGCCCCAGCTCCCCTAGGGTAAGGCTGCCCTGCCAGCCCCTCGTCCCAGGTCCTGAGCTGAGACCCTCTGCTGC TGAGTTGAAATTAGAAGCCCTCACCCAACGTCTGGAGCGAGAGATGGATGCTCACCCGAAGGCTGATTACTTTGGAGCCTGTGTGAAATG CAGCAAAGGGGTGTTTGGGGCTGGCCAGGCCTGTCAGGCCATGGGGAACCTCTACCATGACACATGCTTCACCTGTGCAGCTTGCAGCCG GAAGCTGAGAGGAAAAGCCTTTTATTTTGTCAACGGCAAAGTGTTTTGTGAAGAAGACTTCCTGCAAGCCTCTCAGAGCGTCATTCTCCA CAGCCCCGAGTTTGAGGATGCTTTGTGTGCCCTGATGGTAATGGCTGCTCCACTGGCCCCTCATGTAACCTCAGAGATCTGGGCAGGCCT GGCGCTGGTGCCGAGGAAGCTCTGTGCCCACTACACTTGGGATGCCAGTGTGCTGCTCCAGGCATGGCCTGCTGTGGACCCGGAGTTCCT GCAGCAGCCTGAGGTTGTCCAGATGGCAGTTCTGATCAACAATAAAGCTTGTGGCAAAATTCCTGTGCCCCAACAAGTTGCCCGGGACCA GGACAAAGTCCACGAATTTGTTCTTCAAAGCGAGCTGGGTGTCAGGCTTTTGCAAGGACGAAGCATCAAGAAGTCCTTCCTTTCCCCGAG AACTGCCCTCATCAACTTCCTGGTGCAAGATTGACAGCCAGGAGGCTGCAGCTACCACGAGGGCCTCTGAGGAACCTCCTTCCAGGCCTG GGATGAGGGGGCGATGTCTGCTGGCCCAGGGGAAGGGAAAAGACAAATGTCTTGACTGTTGACCTCGGTCCTGTGGCAGACTGCAGTCAA CAGTGTGCCTCTGTAGTGTGGCCTGGTGCTGGGGTGAAGGTGAGCTGGGCAAAGGAGAAATATGAGCTACTGAGGAGGGGGTTGGACATC CTGCCCCTCACCCCCCACCCACACTGCAGGTAGAGGAGGCCATCTGATCCCATGGGAAGCCATCAGAGACACTGCTGGTGGGAGCAGGAA GGAGCAGTGCCCCTCGAGCAGCCAGGAAGCCTGCGGATCTGGGAAATGGCTCTGCCTTAGGCACTTCTCGGGAATTTGAGGCCAGCCTGA GGAACTGCAGGACTCAGGTGCAATGTGCCAGCCACTTGGAACTGCTAACTGAGCCTCCAGATGGTAGTGAATGGTCTCTTTGCCTTCAGG CTGGATGAGGAAGTCATTTAGGAAATGTTCAAATAACCAATATGTGGAAATGGACACAGGGATCTTCTGAAGTTGCTTTGAATCAAAAGG CAGGCAGTGCTGGTTCCTCTGCCTGTGTCCCCACCACTCCCCAGCTCTGTCATGCAGGCCTGTCCTCCCCAACCCCAGCTGGATGTGCCT CCCAGGCCTGCTGTGGTTCTGACACACAGGATCCCAGGCAAGGCACCACTTCCTCACATGAATGAGGAGCAGCAAGTCATAACCACTCCC TTGGGTATACAATTTGCTGTGTAGTGAAGTGGAACCAGGCTCAGGCTGCTGGTCCCAACCTCAGAGCCCCACCGCAGCCCAGTAGGGATG CAGCACGCCCCAGAGGGCTCATGTGGGCCCCAGATGGCAATGCCACCATTGTTGATGTGACTCCAGAGCCAGTTATTAGGAAGAGCAAGC TCACCACAGAGGAGTGGAACTGAGGCCCCCCAGATGTTGCCTCCGGTGTCCAAGCCACAGCGGTCTGGCTGTTGGGAAGATGGCCAGGAA TGGACTCATACCATTGGCACATTAGGCTAATCCTGGTTTTATGTGAAGTCAGCAATTAAGTGTTCCCACTAGAACTGACCTAAGCCACTG ATTAATATTTAATGAGGGAAGGTAGGGGAGAATCTAGCCATTTTATAATGCCAGAAATCTATATATGTTATCTGATGCCATTTTTCTGAA GTAGCCTCACATGTGGTCCCCCTGCAGTTCAGCAGTTAACAGATGACTTTTTTAGTGTAATAAAATGTTTATCATCTATGACTTCAGGAC ATATGTGTGATCCTGGAATACACCATATTCCAATTTCAGAGTTAATTACAAACAGATTGAGGTATTCCATCATCATCGGAAGCATTGGCT GTGTGTCTGACTCCACATGGAATGCTATAAAGTGGGATACATGTGGTTCTTCTTGTTCCAGAACTTACAGTCCATGGTAGACAACACTGA TACAGGCAAACTAGCAACAGCAATTAAGTCACTGGTTCTCAGACTTAATACTCTGCCTGGTCCTCATGCCCAGATATTCCAATTTAATTG GTCCATGGTGTGGCTTGAACACCAGGAATCTTTAAAACTCCACAAGTGATTCTAATGGGCAGCAAAGTTTGAGAATCACTGGACACATTG ATGCACTTGAGCCATCATTTCTATCTAGTTCTTCCTCTTCCTAATCTTCAGGTTAGCGGGGATAAGTTTGGTCCAGGACCAAGAGTTGGA CCAAAAGGGAAGACAGGGGCCAGAAGTCTAGAGTGCTAGAGCCGACTTGAATGTACTCAGTCTCATTGCACATGGCAGTGAATATGGATT >In-frame_ENST00000440097_ENST00000415258_TCGA-78-7147-01A_LIMD1_chr3_45707209_+_LARS2_chr3_45565489_length(amino acids)=665AA_start in transcript=556_stop in transcript=2553 MDKYDDLGLEASKFIEDLNMYEASKDGLFRVDKGAGNNPEFEETRRVFATKMAKIHLQQQQQQLLQEETLPRGSRGPVNGGGRLGPQARW EVVGSKLTVDGAAKPPLAASTGAPGAVTTLAAGQPPYPPQEQRSRPYLHGTRHGSQDCGSRESLATSEMSAFHQPGPCEDPSCLTHGDYY DNLSLASPKWGDKPGVSPSIGLSVGSGWPSSPGSDPPLPKPCGDHPLNHRQLSLSSSRSSEGSLGGQNSGIGGRSSEKPTGLWSTASSQR VSPGLPSPNLENGAPAVGPVQPRTPSVSAPLALSCPRQGGLPRSNSGLGGEVSGVMSKPNVDPQPWFQDGPKSYLSSSAPSSSPAGLDGS QQGAVPGLGPKPGCTDLGTGPKLSPTSLVHPVMSTLPELSCKEGPLGWSSDGSLGSVLLDSPSSPRVRLPCQPLVPGPELRPSAAELKLE ALTQRLEREMDAHPKADYFGACVKCSKGVFGAGQACQAMGNLYHDTCFTCAACSRKLRGKAFYFVNGKVFCEEDFLQASQSVILHSPEFE DALCALMVMAAPLAPHVTSEIWAGLALVPRKLCAHYTWDASVLLQAWPAVDPEFLQQPEVVQMAVLINNKACGKIPVPQQVARDQDKVHE -------------------------------------------------------------- >In-frame_ENST00000440097_ENST00000414984_TCGA-78-7147-01A_LIMD1_chr3_45707209_+_LARS2_chr3_45565489_length(transcript)=2633nt_BP=2134nt GCAGCGGAGGACCCAGCGCCTGGAACGTACCTGCGCCTCAGCCGCCGCGCGTTTGCTCCGGCCCGACTCGCGGCCTCGGCGCCCTCCCGG CCGATTCAGCTTCACCCGGCCCAGTCGGCTGCTGCCTTGCTGTGAGTTTCCGTGTTTGGTTGCCTAAGGAGGATGTGATTTTACTTTTTT GCTGTTTTCTTTTTCCTTTTATAATTTGAAGAGGAGAAAAGAACTCCGCTGAGCAGGCCCGGGACGGCGAAGTGCCACCAGCTACCCCAA CAAGGACGTCTCCAGGGGAAAGGGAGTTGGAAGCAAACTTGGTCCAGCTGGCGTTGAGGTCTCAACTTCGGCTGGACTCTTAAATCCTGG GGTCATGCCCTTCACGCTAGGCAGGTGGAAGTCTTTACTTGTACTGGGCCGGACTTGAGCCCCGACCCTTCGCCAGCATCTCCCCGCTGC CCTCAACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACGGCACCTGGGCTAGGCCCG GACACCTGTCTGCAGCATGGATAAGTATGACGACCTGGGCCTGGAGGCCAGTAAATTCATCGAGGACCTGAACATGTATGAGGCCTCTAA GGATGGGCTCTTCCGAGTGGACAAGGGTGCAGGCAACAACCCCGAGTTTGAGGAAACTCGCAGGGTGTTCGCCACCAAGATGGCCAAAAT CCACCTCCAGCAGCAGCAGCAGCAGCTCCTGCAGGAGGAGACTCTGCCCAGGGGGAGTAGAGGCCCTGTCAATGGAGGGGGCCGCCTGGG CCCACAGGCCCGTTGGGAAGTTGTGGGCAGCAAGCTGACTGTGGATGGTGCTGCCAAGCCTCCTCTTGCTGCCTCGACAGGGGCACCTGG GGCAGTCACCACCCTCGCTGCTGGGCAGCCCCCGTACCCACCGCAGGAGCAGAGATCCAGGCCATACCTGCATGGCACGAGGCATGGCAG CCAGGACTGTGGTTCCAGGGAGAGCCTGGCGACTTCTGAGATGTCTGCTTTCCACCAGCCAGGCCCCTGTGAGGATCCTTCCTGCCTCAC TCATGGAGACTATTATGACAACCTCTCCTTGGCAAGCCCAAAGTGGGGTGACAAACCAGGAGTGTCCCCCAGCATCGGCCTGAGTGTAGG GAGTGGGTGGCCTAGCTCCCCGGGGAGTGACCCACCACTGCCCAAACCCTGCGGGGACCATCCCCTAAATCACCGACAGCTCTCCCTGAG CTCCAGCAGGTCTTCTGAGGGTAGCCTCGGTGGTCAGAATAGTGGCATTGGTGGCCGCAGCAGCGAGAAGCCAACAGGCCTTTGGTCCAC TGCCTCCTCCCAGCGGGTGAGCCCTGGCCTGCCTTCCCCAAACTTGGAGAACGGAGCACCAGCTGTGGGGCCTGTTCAGCCCAGGACCCC TTCTGTGTCAGCACCCTTGGCCCTGAGCTGCCCCAGGCAAGGAGGTCTTCCAAGATCAAACTCGGGGCTGGGGGGTGAGGTTTCAGGTGT GATGTCCAAACCCAATGTGGACCCCCAACCCTGGTTCCAGGATGGGCCCAAATCTTACCTTTCCAGTTCTGCCCCGTCATCCTCGCCAGC TGGTCTGGACGGTTCACAGCAGGGTGCGGTCCCTGGGCTGGGGCCGAAGCCTGGCTGCACAGACCTTGGCACTGGTCCCAAGCTCAGCCC CACCAGTCTTGTCCATCCAGTGATGTCCACCCTGCCTGAGTTATCTTGTAAAGAGGGTCCCCTGGGCTGGTCTTCTGATGGTAGCCTGGG ATCTGTGCTCCTGGACAGCCCCAGCTCCCCTAGGGTAAGGCTGCCCTGCCAGCCCCTCGTCCCAGGTCCTGAGCTGAGACCCTCTGCTGC TGAGTTGAAATTAGAAGCCCTCACCCAACGTCTGGAGCGAGAGATGGATGCTCACCCGAAGGCTGATTACTTTGGAGCCTGTGTGAAATG CAGCAAAGGGGTGTTTGGGGCTGGCCAGGCCTGTCAGGCCATGGGGAACCTCTACCATGACACATGCTTCACCTGTGCAGCTTGCAGCCG GAAGCTGAGAGGAAAAGCCTTTTATTTTGTCAACGGCAAAGTGTTTTGTGAAGAAGACTTCCTGCAAGCCTCTCAGAGCGTCATTCTCCA CAGCCCCGAGTTTGAGGATGCTTTGTGTGCCCTGATGGTAATGGCTGCTCCACTGGCCCCTCATGTAACCTCAGAGATCTGGGCAGGCCT GGCGCTGGTGCCGAGGAAGCTCTGTGCCCACTACACTTGGGATGCCAGTGTGCTGCTCCAGGCATGGCCTGCTGTGGACCCGGAGTTCCT GCAGCAGCCTGAGGTTGTCCAGATGGCAGTTCTGATCAACAATAAAGCTTGTGGCAAAATTCCTGTGCCCCAACAAGTTGCCCGGGACCA GGACAAAGTCCACGAATTTGTTCTTCAAAGCGAGCTGGGTGTCAGGCTTTTGCAAGGACGAAGCATCAAGAAGTCCTTCCTTTCCCCGAG AACTGCCCTCATCAACTTCCTGGTGCAAGATTGACAGCCAGGAGGCTGCAGCTACCACGAGGGCCTCTGAGGAACCTCCTTCCAGGCCTG >In-frame_ENST00000440097_ENST00000414984_TCGA-78-7147-01A_LIMD1_chr3_45707209_+_LARS2_chr3_45565489_length(amino acids)=665AA_start in transcript=556_stop in transcript=2553 MDKYDDLGLEASKFIEDLNMYEASKDGLFRVDKGAGNNPEFEETRRVFATKMAKIHLQQQQQQLLQEETLPRGSRGPVNGGGRLGPQARW EVVGSKLTVDGAAKPPLAASTGAPGAVTTLAAGQPPYPPQEQRSRPYLHGTRHGSQDCGSRESLATSEMSAFHQPGPCEDPSCLTHGDYY DNLSLASPKWGDKPGVSPSIGLSVGSGWPSSPGSDPPLPKPCGDHPLNHRQLSLSSSRSSEGSLGGQNSGIGGRSSEKPTGLWSTASSQR VSPGLPSPNLENGAPAVGPVQPRTPSVSAPLALSCPRQGGLPRSNSGLGGEVSGVMSKPNVDPQPWFQDGPKSYLSSSAPSSSPAGLDGS QQGAVPGLGPKPGCTDLGTGPKLSPTSLVHPVMSTLPELSCKEGPLGWSSDGSLGSVLLDSPSSPRVRLPCQPLVPGPELRPSAAELKLE ALTQRLEREMDAHPKADYFGACVKCSKGVFGAGQACQAMGNLYHDTCFTCAACSRKLRGKAFYFVNGKVFCEEDFLQASQSVILHSPEFE DALCALMVMAAPLAPHVTSEIWAGLALVPRKLCAHYTWDASVLLQAWPAVDPEFLQQPEVVQMAVLINNKACGKIPVPQQVARDQDKVHE -------------------------------------------------------------- >In-frame_ENST00000273317_ENST00000265537_TCGA-78-7147-01A_LIMD1_chr3_45707209_+_LARS2_chr3_45565489_length(transcript)=3326nt_BP=1599nt GCCCGGACACCTGTCTGCAGCATGGATAAGTATGACGACCTGGGCCTGGAGGCCAGTAAATTCATCGAGGACCTGAACATGTATGAGGCC TCTAAGGATGGGCTCTTCCGAGTGGACAAGGGTGCAGGCAACAACCCCGAGTTTGAGGAAACTCGCAGGGTGTTCGCCACCAAGATGGCC AAAATCCACCTCCAGCAGCAGCAGCAGCAGCTCCTGCAGGAGGAGACTCTGCCCAGGGGGAGTAGAGGCCCTGTCAATGGAGGGGGCCGC CTGGGCCCACAGGCCCGTTGGGAAGTTGTGGGCAGCAAGCTGACTGTGGATGGTGCTGCCAAGCCTCCTCTTGCTGCCTCGACAGGGGCA CCTGGGGCAGTCACCACCCTCGCTGCTGGGCAGCCCCCGTACCCACCGCAGGAGCAGAGATCCAGGCCATACCTGCATGGCACGAGGCAT GGCAGCCAGGACTGTGGTTCCAGGGAGAGCCTGGCGACTTCTGAGATGTCTGCTTTCCACCAGCCAGGCCCCTGTGAGGATCCTTCCTGC CTCACTCATGGAGACTATTATGACAACCTCTCCTTGGCAAGCCCAAAGTGGGGTGACAAACCAGGAGTGTCCCCCAGCATCGGCCTGAGT GTAGGGAGTGGGTGGCCTAGCTCCCCGGGGAGTGACCCACCACTGCCCAAACCCTGCGGGGACCATCCCCTAAATCACCGACAGCTCTCC CTGAGCTCCAGCAGGTCTTCTGAGGGTAGCCTCGGTGGTCAGAATAGTGGCATTGGTGGCCGCAGCAGCGAGAAGCCAACAGGCCTTTGG TCCACTGCCTCCTCCCAGCGGGTGAGCCCTGGCCTGCCTTCCCCAAACTTGGAGAACGGAGCACCAGCTGTGGGGCCTGTTCAGCCCAGG ACCCCTTCTGTGTCAGCACCCTTGGCCCTGAGCTGCCCCAGGCAAGGAGGTCTTCCAAGATCAAACTCGGGGCTGGGGGGTGAGGTTTCA GGTGTGATGTCCAAACCCAATGTGGACCCCCAACCCTGGTTCCAGGATGGGCCCAAATCTTACCTTTCCAGTTCTGCCCCGTCATCCTCG CCAGCTGGTCTGGACGGTTCACAGCAGGGTGCGGTCCCTGGGCTGGGGCCGAAGCCTGGCTGCACAGACCTTGGCACTGGTCCCAAGCTC AGCCCCACCAGTCTTGTCCATCCAGTGATGTCCACCCTGCCTGAGTTATCTTGTAAAGAGGGTCCCCTGGGCTGGTCTTCTGATGGTAGC CTGGGATCTGTGCTCCTGGACAGCCCCAGCTCCCCTAGGGTAAGGCTGCCCTGCCAGCCCCTCGTCCCAGGTCCTGAGCTGAGACCCTCT GCTGCTGAGTTGAAATTAGAAGCCCTCACCCAACGTCTGGAGCGAGAGATGGATGCTCACCCGAAGGCTGATTACTTTGGAGCCTGTGTG AAATGCAGCAAAGGGGTGTTTGGGGCTGGCCAGGCCTGTCAGGCCATGGGGAACCTCTACCATGACACATGCTTCACCTGTGCAGCTTGC AGCCGGAAGCTGAGAGGAAAAGCCTTTTATTTTGTCAACGGCAAAGTGTTTTGTGAAGAAGACTTCCTGCAAGCCTCTCAGAGCGTCATT CTCCACAGCCCCGAGTTTGAGGATGCTTTGTGTGCCCTGATGGTAATGGCTGCTCCACTGGCCCCTCATGTAACCTCAGAGATCTGGGCA GGCCTGGCGCTGGTGCCGAGGAAGCTCTGTGCCCACTACACTTGGGATGCCAGTGTGCTGCTCCAGGCATGGCCTGCTGTGGACCCGGAG TTCCTGCAGCAGCCTGAGGTTGTCCAGATGGCAGTTCTGATCAACAATAAAGCTTGTGGCAAAATTCCTGTGCCCCAACAAGTTGCCCGG GACCAGGACAAAGTCCACGAATTTGTTCTTCAAAGCGAGCTGGGTGTCAGGCTTTTGCAAGGACGAAGCATCAAGAAGTCCTTCCTTTCC CCGAGAACTGCCCTCATCAACTTCCTGGTGCAAGATTGACAGCCAGGAGGCTGCAGCTACCACGAGGGCCTCTGAGGAACCTCCTTCCAG GCCTGGGATGAGGGGGCGATGTCTGCTGGCCCAGGGGAAGGGAAAAGACAAATGTCTTGACTGTTGACCTCGGTCCTGTGGCAGACTGCA GTCAACAGTGTGCCTCTGTAGTGTGGCCTGGTGCTGGGGTGAAGGTGAGCTGGGCAAAGGAGAAATATGAGCTACTGAGGAGGGGGTTGG ACATCCTGCCCCTCACCCCCCACCCACACTGCAGGTAGAGGAGGCCATCTGATCCCATGGGAAGCCATCAGAGACACTGCTGGTGGGAGC AGGAAGGAGCAGTGCCCCTCGAGCAGCCAGGAAGCCTGCGGATCTGGGAAATGGCTCTGCCTTAGGCACTTCTCGGGAATTTGAGGCCAG CCTGAGGAACTGCAGGACTCAGGTGCAATGTGCCAGCCACTTGGAACTGCTAACTGAGCCTCCAGATGGTAGTGAATGGTCTCTTTGCCT TCAGGCTGGATGAGGAAGTCATTTAGGAAATGTTCAAATAACCAATATGTGGAAATGGACACAGGGATCTTCTGAAGTTGCTTTGAATCA AAAGGCAGGCAGTGCTGGTTCCTCTGCCTGTGTCCCCACCACTCCCCAGCTCTGTCATGCAGGCCTGTCCTCCCCAACCCCAGCTGGATG TGCCTCCCAGGCCTGCTGTGGTTCTGACACACAGGATCCCAGGCAAGGCACCACTTCCTCACATGAATGAGGAGCAGCAAGTCATAACCA CTCCCTTGGGTATACAATTTGCTGTGTAGTGAAGTGGAACCAGGCTCAGGCTGCTGGTCCCAACCTCAGAGCCCCACCGCAGCCCAGTAG GGATGCAGCACGCCCCAGAGGGCTCATGTGGGCCCCAGATGGCAATGCCACCATTGTTGATGTGACTCCAGAGCCAGTTATTAGGAAGAG CAAGCTCACCACAGAGGAGTGGAACTGAGGCCCCCCAGATGTTGCCTCCGGTGTCCAAGCCACAGCGGTCTGGCTGTTGGGAAGATGGCC AGGAATGGACTCATACCATTGGCACATTAGGCTAATCCTGGTTTTATGTGAAGTCAGCAATTAAGTGTTCCCACTAGAACTGACCTAAGC CACTGATTAATATTTAATGAGGGAAGGTAGGGGAGAATCTAGCCATTTTATAATGCCAGAAATCTATATATGTTATCTGATGCCATTTTT >In-frame_ENST00000273317_ENST00000265537_TCGA-78-7147-01A_LIMD1_chr3_45707209_+_LARS2_chr3_45565489_length(amino acids)=665AA_start in transcript=21_stop in transcript=2018 MDKYDDLGLEASKFIEDLNMYEASKDGLFRVDKGAGNNPEFEETRRVFATKMAKIHLQQQQQQLLQEETLPRGSRGPVNGGGRLGPQARW EVVGSKLTVDGAAKPPLAASTGAPGAVTTLAAGQPPYPPQEQRSRPYLHGTRHGSQDCGSRESLATSEMSAFHQPGPCEDPSCLTHGDYY DNLSLASPKWGDKPGVSPSIGLSVGSGWPSSPGSDPPLPKPCGDHPLNHRQLSLSSSRSSEGSLGGQNSGIGGRSSEKPTGLWSTASSQR VSPGLPSPNLENGAPAVGPVQPRTPSVSAPLALSCPRQGGLPRSNSGLGGEVSGVMSKPNVDPQPWFQDGPKSYLSSSAPSSSPAGLDGS QQGAVPGLGPKPGCTDLGTGPKLSPTSLVHPVMSTLPELSCKEGPLGWSSDGSLGSVLLDSPSSPRVRLPCQPLVPGPELRPSAAELKLE ALTQRLEREMDAHPKADYFGACVKCSKGVFGAGQACQAMGNLYHDTCFTCAACSRKLRGKAFYFVNGKVFCEEDFLQASQSVILHSPEFE DALCALMVMAAPLAPHVTSEIWAGLALVPRKLCAHYTWDASVLLQAWPAVDPEFLQQPEVVQMAVLINNKACGKIPVPQQVARDQDKVHE -------------------------------------------------------------- >In-frame_ENST00000273317_ENST00000415258_TCGA-78-7147-01A_LIMD1_chr3_45707209_+_LARS2_chr3_45565489_length(transcript)=3910nt_BP=1599nt GCCCGGACACCTGTCTGCAGCATGGATAAGTATGACGACCTGGGCCTGGAGGCCAGTAAATTCATCGAGGACCTGAACATGTATGAGGCC TCTAAGGATGGGCTCTTCCGAGTGGACAAGGGTGCAGGCAACAACCCCGAGTTTGAGGAAACTCGCAGGGTGTTCGCCACCAAGATGGCC AAAATCCACCTCCAGCAGCAGCAGCAGCAGCTCCTGCAGGAGGAGACTCTGCCCAGGGGGAGTAGAGGCCCTGTCAATGGAGGGGGCCGC CTGGGCCCACAGGCCCGTTGGGAAGTTGTGGGCAGCAAGCTGACTGTGGATGGTGCTGCCAAGCCTCCTCTTGCTGCCTCGACAGGGGCA CCTGGGGCAGTCACCACCCTCGCTGCTGGGCAGCCCCCGTACCCACCGCAGGAGCAGAGATCCAGGCCATACCTGCATGGCACGAGGCAT GGCAGCCAGGACTGTGGTTCCAGGGAGAGCCTGGCGACTTCTGAGATGTCTGCTTTCCACCAGCCAGGCCCCTGTGAGGATCCTTCCTGC CTCACTCATGGAGACTATTATGACAACCTCTCCTTGGCAAGCCCAAAGTGGGGTGACAAACCAGGAGTGTCCCCCAGCATCGGCCTGAGT GTAGGGAGTGGGTGGCCTAGCTCCCCGGGGAGTGACCCACCACTGCCCAAACCCTGCGGGGACCATCCCCTAAATCACCGACAGCTCTCC CTGAGCTCCAGCAGGTCTTCTGAGGGTAGCCTCGGTGGTCAGAATAGTGGCATTGGTGGCCGCAGCAGCGAGAAGCCAACAGGCCTTTGG TCCACTGCCTCCTCCCAGCGGGTGAGCCCTGGCCTGCCTTCCCCAAACTTGGAGAACGGAGCACCAGCTGTGGGGCCTGTTCAGCCCAGG ACCCCTTCTGTGTCAGCACCCTTGGCCCTGAGCTGCCCCAGGCAAGGAGGTCTTCCAAGATCAAACTCGGGGCTGGGGGGTGAGGTTTCA GGTGTGATGTCCAAACCCAATGTGGACCCCCAACCCTGGTTCCAGGATGGGCCCAAATCTTACCTTTCCAGTTCTGCCCCGTCATCCTCG CCAGCTGGTCTGGACGGTTCACAGCAGGGTGCGGTCCCTGGGCTGGGGCCGAAGCCTGGCTGCACAGACCTTGGCACTGGTCCCAAGCTC AGCCCCACCAGTCTTGTCCATCCAGTGATGTCCACCCTGCCTGAGTTATCTTGTAAAGAGGGTCCCCTGGGCTGGTCTTCTGATGGTAGC CTGGGATCTGTGCTCCTGGACAGCCCCAGCTCCCCTAGGGTAAGGCTGCCCTGCCAGCCCCTCGTCCCAGGTCCTGAGCTGAGACCCTCT GCTGCTGAGTTGAAATTAGAAGCCCTCACCCAACGTCTGGAGCGAGAGATGGATGCTCACCCGAAGGCTGATTACTTTGGAGCCTGTGTG AAATGCAGCAAAGGGGTGTTTGGGGCTGGCCAGGCCTGTCAGGCCATGGGGAACCTCTACCATGACACATGCTTCACCTGTGCAGCTTGC AGCCGGAAGCTGAGAGGAAAAGCCTTTTATTTTGTCAACGGCAAAGTGTTTTGTGAAGAAGACTTCCTGCAAGCCTCTCAGAGCGTCATT CTCCACAGCCCCGAGTTTGAGGATGCTTTGTGTGCCCTGATGGTAATGGCTGCTCCACTGGCCCCTCATGTAACCTCAGAGATCTGGGCA GGCCTGGCGCTGGTGCCGAGGAAGCTCTGTGCCCACTACACTTGGGATGCCAGTGTGCTGCTCCAGGCATGGCCTGCTGTGGACCCGGAG TTCCTGCAGCAGCCTGAGGTTGTCCAGATGGCAGTTCTGATCAACAATAAAGCTTGTGGCAAAATTCCTGTGCCCCAACAAGTTGCCCGG GACCAGGACAAAGTCCACGAATTTGTTCTTCAAAGCGAGCTGGGTGTCAGGCTTTTGCAAGGACGAAGCATCAAGAAGTCCTTCCTTTCC CCGAGAACTGCCCTCATCAACTTCCTGGTGCAAGATTGACAGCCAGGAGGCTGCAGCTACCACGAGGGCCTCTGAGGAACCTCCTTCCAG GCCTGGGATGAGGGGGCGATGTCTGCTGGCCCAGGGGAAGGGAAAAGACAAATGTCTTGACTGTTGACCTCGGTCCTGTGGCAGACTGCA GTCAACAGTGTGCCTCTGTAGTGTGGCCTGGTGCTGGGGTGAAGGTGAGCTGGGCAAAGGAGAAATATGAGCTACTGAGGAGGGGGTTGG ACATCCTGCCCCTCACCCCCCACCCACACTGCAGGTAGAGGAGGCCATCTGATCCCATGGGAAGCCATCAGAGACACTGCTGGTGGGAGC AGGAAGGAGCAGTGCCCCTCGAGCAGCCAGGAAGCCTGCGGATCTGGGAAATGGCTCTGCCTTAGGCACTTCTCGGGAATTTGAGGCCAG CCTGAGGAACTGCAGGACTCAGGTGCAATGTGCCAGCCACTTGGAACTGCTAACTGAGCCTCCAGATGGTAGTGAATGGTCTCTTTGCCT TCAGGCTGGATGAGGAAGTCATTTAGGAAATGTTCAAATAACCAATATGTGGAAATGGACACAGGGATCTTCTGAAGTTGCTTTGAATCA AAAGGCAGGCAGTGCTGGTTCCTCTGCCTGTGTCCCCACCACTCCCCAGCTCTGTCATGCAGGCCTGTCCTCCCCAACCCCAGCTGGATG TGCCTCCCAGGCCTGCTGTGGTTCTGACACACAGGATCCCAGGCAAGGCACCACTTCCTCACATGAATGAGGAGCAGCAAGTCATAACCA CTCCCTTGGGTATACAATTTGCTGTGTAGTGAAGTGGAACCAGGCTCAGGCTGCTGGTCCCAACCTCAGAGCCCCACCGCAGCCCAGTAG GGATGCAGCACGCCCCAGAGGGCTCATGTGGGCCCCAGATGGCAATGCCACCATTGTTGATGTGACTCCAGAGCCAGTTATTAGGAAGAG CAAGCTCACCACAGAGGAGTGGAACTGAGGCCCCCCAGATGTTGCCTCCGGTGTCCAAGCCACAGCGGTCTGGCTGTTGGGAAGATGGCC AGGAATGGACTCATACCATTGGCACATTAGGCTAATCCTGGTTTTATGTGAAGTCAGCAATTAAGTGTTCCCACTAGAACTGACCTAAGC CACTGATTAATATTTAATGAGGGAAGGTAGGGGAGAATCTAGCCATTTTATAATGCCAGAAATCTATATATGTTATCTGATGCCATTTTT CTGAAGTAGCCTCACATGTGGTCCCCCTGCAGTTCAGCAGTTAACAGATGACTTTTTTAGTGTAATAAAATGTTTATCATCTATGACTTC AGGACATATGTGTGATCCTGGAATACACCATATTCCAATTTCAGAGTTAATTACAAACAGATTGAGGTATTCCATCATCATCGGAAGCAT TGGCTGTGTGTCTGACTCCACATGGAATGCTATAAAGTGGGATACATGTGGTTCTTCTTGTTCCAGAACTTACAGTCCATGGTAGACAAC ACTGATACAGGCAAACTAGCAACAGCAATTAAGTCACTGGTTCTCAGACTTAATACTCTGCCTGGTCCTCATGCCCAGATATTCCAATTT AATTGGTCCATGGTGTGGCTTGAACACCAGGAATCTTTAAAACTCCACAAGTGATTCTAATGGGCAGCAAAGTTTGAGAATCACTGGACA CATTGATGCACTTGAGCCATCATTTCTATCTAGTTCTTCCTCTTCCTAATCTTCAGGTTAGCGGGGATAAGTTTGGTCCAGGACCAAGAG TTGGACCAAAAGGGAAGACAGGGGCCAGAAGTCTAGAGTGCTAGAGCCGACTTGAATGTACTCAGTCTCATTGCACATGGCAGTGAATAT >In-frame_ENST00000273317_ENST00000415258_TCGA-78-7147-01A_LIMD1_chr3_45707209_+_LARS2_chr3_45565489_length(amino acids)=665AA_start in transcript=21_stop in transcript=2018 MDKYDDLGLEASKFIEDLNMYEASKDGLFRVDKGAGNNPEFEETRRVFATKMAKIHLQQQQQQLLQEETLPRGSRGPVNGGGRLGPQARW EVVGSKLTVDGAAKPPLAASTGAPGAVTTLAAGQPPYPPQEQRSRPYLHGTRHGSQDCGSRESLATSEMSAFHQPGPCEDPSCLTHGDYY DNLSLASPKWGDKPGVSPSIGLSVGSGWPSSPGSDPPLPKPCGDHPLNHRQLSLSSSRSSEGSLGGQNSGIGGRSSEKPTGLWSTASSQR VSPGLPSPNLENGAPAVGPVQPRTPSVSAPLALSCPRQGGLPRSNSGLGGEVSGVMSKPNVDPQPWFQDGPKSYLSSSAPSSSPAGLDGS QQGAVPGLGPKPGCTDLGTGPKLSPTSLVHPVMSTLPELSCKEGPLGWSSDGSLGSVLLDSPSSPRVRLPCQPLVPGPELRPSAAELKLE ALTQRLEREMDAHPKADYFGACVKCSKGVFGAGQACQAMGNLYHDTCFTCAACSRKLRGKAFYFVNGKVFCEEDFLQASQSVILHSPEFE DALCALMVMAAPLAPHVTSEIWAGLALVPRKLCAHYTWDASVLLQAWPAVDPEFLQQPEVVQMAVLINNKACGKIPVPQQVARDQDKVHE -------------------------------------------------------------- >In-frame_ENST00000273317_ENST00000414984_TCGA-78-7147-01A_LIMD1_chr3_45707209_+_LARS2_chr3_45565489_length(transcript)=2098nt_BP=1599nt GCCCGGACACCTGTCTGCAGCATGGATAAGTATGACGACCTGGGCCTGGAGGCCAGTAAATTCATCGAGGACCTGAACATGTATGAGGCC TCTAAGGATGGGCTCTTCCGAGTGGACAAGGGTGCAGGCAACAACCCCGAGTTTGAGGAAACTCGCAGGGTGTTCGCCACCAAGATGGCC AAAATCCACCTCCAGCAGCAGCAGCAGCAGCTCCTGCAGGAGGAGACTCTGCCCAGGGGGAGTAGAGGCCCTGTCAATGGAGGGGGCCGC CTGGGCCCACAGGCCCGTTGGGAAGTTGTGGGCAGCAAGCTGACTGTGGATGGTGCTGCCAAGCCTCCTCTTGCTGCCTCGACAGGGGCA CCTGGGGCAGTCACCACCCTCGCTGCTGGGCAGCCCCCGTACCCACCGCAGGAGCAGAGATCCAGGCCATACCTGCATGGCACGAGGCAT GGCAGCCAGGACTGTGGTTCCAGGGAGAGCCTGGCGACTTCTGAGATGTCTGCTTTCCACCAGCCAGGCCCCTGTGAGGATCCTTCCTGC CTCACTCATGGAGACTATTATGACAACCTCTCCTTGGCAAGCCCAAAGTGGGGTGACAAACCAGGAGTGTCCCCCAGCATCGGCCTGAGT GTAGGGAGTGGGTGGCCTAGCTCCCCGGGGAGTGACCCACCACTGCCCAAACCCTGCGGGGACCATCCCCTAAATCACCGACAGCTCTCC CTGAGCTCCAGCAGGTCTTCTGAGGGTAGCCTCGGTGGTCAGAATAGTGGCATTGGTGGCCGCAGCAGCGAGAAGCCAACAGGCCTTTGG TCCACTGCCTCCTCCCAGCGGGTGAGCCCTGGCCTGCCTTCCCCAAACTTGGAGAACGGAGCACCAGCTGTGGGGCCTGTTCAGCCCAGG ACCCCTTCTGTGTCAGCACCCTTGGCCCTGAGCTGCCCCAGGCAAGGAGGTCTTCCAAGATCAAACTCGGGGCTGGGGGGTGAGGTTTCA GGTGTGATGTCCAAACCCAATGTGGACCCCCAACCCTGGTTCCAGGATGGGCCCAAATCTTACCTTTCCAGTTCTGCCCCGTCATCCTCG CCAGCTGGTCTGGACGGTTCACAGCAGGGTGCGGTCCCTGGGCTGGGGCCGAAGCCTGGCTGCACAGACCTTGGCACTGGTCCCAAGCTC AGCCCCACCAGTCTTGTCCATCCAGTGATGTCCACCCTGCCTGAGTTATCTTGTAAAGAGGGTCCCCTGGGCTGGTCTTCTGATGGTAGC CTGGGATCTGTGCTCCTGGACAGCCCCAGCTCCCCTAGGGTAAGGCTGCCCTGCCAGCCCCTCGTCCCAGGTCCTGAGCTGAGACCCTCT GCTGCTGAGTTGAAATTAGAAGCCCTCACCCAACGTCTGGAGCGAGAGATGGATGCTCACCCGAAGGCTGATTACTTTGGAGCCTGTGTG AAATGCAGCAAAGGGGTGTTTGGGGCTGGCCAGGCCTGTCAGGCCATGGGGAACCTCTACCATGACACATGCTTCACCTGTGCAGCTTGC AGCCGGAAGCTGAGAGGAAAAGCCTTTTATTTTGTCAACGGCAAAGTGTTTTGTGAAGAAGACTTCCTGCAAGCCTCTCAGAGCGTCATT CTCCACAGCCCCGAGTTTGAGGATGCTTTGTGTGCCCTGATGGTAATGGCTGCTCCACTGGCCCCTCATGTAACCTCAGAGATCTGGGCA GGCCTGGCGCTGGTGCCGAGGAAGCTCTGTGCCCACTACACTTGGGATGCCAGTGTGCTGCTCCAGGCATGGCCTGCTGTGGACCCGGAG TTCCTGCAGCAGCCTGAGGTTGTCCAGATGGCAGTTCTGATCAACAATAAAGCTTGTGGCAAAATTCCTGTGCCCCAACAAGTTGCCCGG GACCAGGACAAAGTCCACGAATTTGTTCTTCAAAGCGAGCTGGGTGTCAGGCTTTTGCAAGGACGAAGCATCAAGAAGTCCTTCCTTTCC CCGAGAACTGCCCTCATCAACTTCCTGGTGCAAGATTGACAGCCAGGAGGCTGCAGCTACCACGAGGGCCTCTGAGGAACCTCCTTCCAG >In-frame_ENST00000273317_ENST00000414984_TCGA-78-7147-01A_LIMD1_chr3_45707209_+_LARS2_chr3_45565489_length(amino acids)=665AA_start in transcript=21_stop in transcript=2018 MDKYDDLGLEASKFIEDLNMYEASKDGLFRVDKGAGNNPEFEETRRVFATKMAKIHLQQQQQQLLQEETLPRGSRGPVNGGGRLGPQARW EVVGSKLTVDGAAKPPLAASTGAPGAVTTLAAGQPPYPPQEQRSRPYLHGTRHGSQDCGSRESLATSEMSAFHQPGPCEDPSCLTHGDYY DNLSLASPKWGDKPGVSPSIGLSVGSGWPSSPGSDPPLPKPCGDHPLNHRQLSLSSSRSSEGSLGGQNSGIGGRSSEKPTGLWSTASSQR VSPGLPSPNLENGAPAVGPVQPRTPSVSAPLALSCPRQGGLPRSNSGLGGEVSGVMSKPNVDPQPWFQDGPKSYLSSSAPSSSPAGLDGS QQGAVPGLGPKPGCTDLGTGPKLSPTSLVHPVMSTLPELSCKEGPLGWSSDGSLGSVLLDSPSSPRVRLPCQPLVPGPELRPSAAELKLE ALTQRLEREMDAHPKADYFGACVKCSKGVFGAGQACQAMGNLYHDTCFTCAACSRKLRGKAFYFVNGKVFCEEDFLQASQSVILHSPEFE DALCALMVMAAPLAPHVTSEIWAGLALVPRKLCAHYTWDASVLLQAWPAVDPEFLQQPEVVQMAVLINNKACGKIPVPQQVARDQDKVHE -------------------------------------------------------------- |
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Fusion Gene PPI Analysis for LIMD1-LARS2 |
Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in |
Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
Hgene | Hgene's interactors | Tgene | Tgene's interactors |
- Retained PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
Hgene | LIMD1 | chr3:45637779 | chr3:45557586 | ENST00000273317 | - | 1 | 8 | 186_260 | 469.3333333333333 | 677.0 | EGLN1/PHD2 |
Hgene | LIMD1 | chr3:45707209 | chr3:45565489 | ENST00000273317 | + | 3 | 8 | 186_260 | 526.0 | 677.0 | EGLN1/PHD2 |
Hgene | LIMD1 | chr3:45637779 | chr3:45557586 | ENST00000273317 | - | 1 | 8 | 404_442 | 469.3333333333333 | 677.0 | RB1 |
Hgene | LIMD1 | chr3:45707209 | chr3:45565489 | ENST00000273317 | + | 3 | 8 | 404_442 | 526.0 | 677.0 | RB1 |
- Lost PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
- Retained PPIs, but lost function due to frame-shift fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Related Drugs for LIMD1-LARS2 |
Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.8 2021-05-08) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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Related Diseases for LIMD1-LARS2 |
Diseases associated with fusion partners. (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Tgene | LARS2 | C0685838 | Gonadal dysgenesis XX type deafness | 10 | CLINGEN;GENOMICS_ENGLAND;ORPHANET |
Tgene | LARS2 | C3809105 | PERRAULT SYNDROME 4 | 3 | GENOMICS_ENGLAND;UNIPROT |
Tgene | LARS2 | C0005586 | Bipolar Disorder | 1 | PSYGENET |
Tgene | LARS2 | C0036341 | Schizophrenia | 1 | PSYGENET |
Tgene | LARS2 | C4310761 | HYDROPS, LACTIC ACIDOSIS, AND SIDEROBLASTIC ANEMIA | 1 | CTD_human;GENOMICS_ENGLAND;ORPHANET;UNIPROT |