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Fusion Gene Summary | |
Fusion Gene ORF analysis | |
Fusion Genomic Features | |
Fusion Protein Features | |
Fusion Gene Sequence | |
Fusion Gene PPI analysis | |
Related Drugs | |
Related Diseases |
Fusion gene:LMBRD1-COL19A1 (FusionGDB2 ID:45508) |
Fusion Gene Summary for LMBRD1-COL19A1 |
Fusion gene summary |
Fusion gene information | Fusion gene name: LMBRD1-COL19A1 | Fusion gene ID: 45508 | Hgene | Tgene | Gene symbol | LMBRD1 | COL19A1 | Gene ID | 55788 | 1310 |
Gene name | LMBR1 domain containing 1 | collagen type XIX alpha 1 chain | |
Synonyms | C6orf209|LMBD1|MAHCF|NESI | COL9A1L|D6S228E | |
Cytomap | 6q13 | 6q13 | |
Type of gene | protein-coding | protein-coding | |
Description | probable lysosomal cobalamin transporterHDAg-L-interacting protein NESIhepatitis delta antigen-L interacting proteinliver regeneration p-53 related proteinnuclear export signal-interacting protein | collagen alpha-1(XIX) chaina1 chain of type XIX collagencollagen XIX, alpha-1 polypeptidecollagen alpha 1 (Y) chaincollagen, type XIX, alpha 1 | |
Modification date | 20200313 | 20200313 | |
UniProtAcc | Q9NUN5 | Q14993 | |
Ensembl transtripts involved in fusion gene | ENST00000370577, ENST00000370570, | ENST00000322773, ENST00000393344, ENST00000476656, | |
Fusion gene scores | * DoF score | 6 X 5 X 6=180 | 5 X 5 X 3=75 |
# samples | 6 | 5 | |
** MAII score | log2(6/180*10)=-1.58496250072116 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(5/75*10)=-0.584962500721156 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
Context | PubMed: LMBRD1 [Title/Abstract] AND COL19A1 [Title/Abstract] AND fusion [Title/Abstract] | ||
Most frequent breakpoint | LMBRD1(70506704)-COL19A1(70778314), # samples:1 | ||
Anticipated loss of major functional domain due to fusion event. |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
Partner | Gene | GO ID | GO term | PubMed ID |
Fusion gene breakpoints across LMBRD1 (5'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
Fusion gene breakpoints across COL19A1 (3'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Source | Disease | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
ChimerDB4 | HNSC | TCGA-CR-7389 | LMBRD1 | chr6 | 70506704 | - | COL19A1 | chr6 | 70778314 | + |
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Fusion Gene ORF analysis for LMBRD1-COL19A1 |
Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
In-frame | ENST00000370577 | ENST00000322773 | LMBRD1 | chr6 | 70506704 | - | COL19A1 | chr6 | 70778314 | + |
In-frame | ENST00000370577 | ENST00000393344 | LMBRD1 | chr6 | 70506704 | - | COL19A1 | chr6 | 70778314 | + |
5CDS-intron | ENST00000370577 | ENST00000476656 | LMBRD1 | chr6 | 70506704 | - | COL19A1 | chr6 | 70778314 | + |
intron-3CDS | ENST00000370570 | ENST00000322773 | LMBRD1 | chr6 | 70506704 | - | COL19A1 | chr6 | 70778314 | + |
intron-3CDS | ENST00000370570 | ENST00000393344 | LMBRD1 | chr6 | 70506704 | - | COL19A1 | chr6 | 70778314 | + |
intron-intron | ENST00000370570 | ENST00000476656 | LMBRD1 | chr6 | 70506704 | - | COL19A1 | chr6 | 70778314 | + |
ORFfinder result based on the fusion transcript sequence of in-frame fusion genes. |
Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | Seq length (transcript) | BP loci (transcript) | Predicted start (transcript) | Predicted stop (transcript) | Seq length (amino acids) |
ENST00000370577 | LMBRD1 | chr6 | 70506704 | - | ENST00000322773 | COL19A1 | chr6 | 70778314 | + | 5259 | 299 | 35 | 2557 | 840 |
ENST00000370577 | LMBRD1 | chr6 | 70506704 | - | ENST00000393344 | COL19A1 | chr6 | 70778314 | + | 5259 | 299 | 35 | 2557 | 840 |
DeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated. |
Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | No-coding score | Coding score |
ENST00000370577 | ENST00000322773 | LMBRD1 | chr6 | 70506704 | - | COL19A1 | chr6 | 70778314 | + | 0.001185037 | 0.99881494 |
ENST00000370577 | ENST00000393344 | LMBRD1 | chr6 | 70506704 | - | COL19A1 | chr6 | 70778314 | + | 0.001185037 | 0.99881494 |
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Fusion Genomic Features for LMBRD1-COL19A1 |
FusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints. |
Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | 1-p | p (fusion gene breakpoint) |
LMBRD1 | chr6 | 70506704 | - | COL19A1 | chr6 | 70778314 | + | 6.27E-07 | 0.9999994 |
LMBRD1 | chr6 | 70506704 | - | COL19A1 | chr6 | 70778314 | + | 6.27E-07 | 0.9999994 |
Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page. |
Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page. |
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Fusion Protein Features for LMBRD1-COL19A1 |
Go to FGviewer for the breakpoints of chr6:70506704-chr6:70778314 - FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels. |
Main function of each fusion partner protein. (from UniProt) |
Hgene | Tgene |
LMBRD1 | COL19A1 |
FUNCTION: Lysosomal membrane chaperone required to export cobalamin (vitamin B12) from the lysosome to the cytosol, allowing its conversion to cofactors (PubMed:19136951). Targets ABCD4 transporter from the endoplasmic reticulum to the lysosome (PubMed:27456980). Then forms a complex with lysosomal ABCD4 and cytoplasmic MMACHC to transport cobalamin across the lysosomal membrane (PubMed:25535791). {ECO:0000269|PubMed:19136951, ECO:0000269|PubMed:27456980, ECO:0000303|PubMed:25535791}.; FUNCTION: [Isoform 3]: (Microbial infection) May play a role in the assembly of hepatitis delta virus (HDV). {ECO:0000269|PubMed:15956556}. | FUNCTION: May act as a cross-bridge between fibrils and other extracellular matrix molecules. Involved in skeletal myogenesis in the developing esophagus. May play a role in organization of the pericellular matrix or the sphinteric smooth muscle. {ECO:0000269|PubMed:12788917}. |
Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | LMBRD1 | chr6:70506704 | chr6:70778314 | ENST00000370577 | - | 1 | 16 | 1_10 | 23.0 | 541.0 | Topological domain | Extracellular |
Tgene | COL19A1 | chr6:70506704 | chr6:70778314 | ENST00000322773 | 13 | 51 | 392_433 | 390.0 | 1143.0 | Domain | Note=Collagen-like 3 | |
Tgene | COL19A1 | chr6:70506704 | chr6:70778314 | ENST00000322773 | 13 | 51 | 474_516 | 390.0 | 1143.0 | Domain | Note=Collagen-like 4 | |
Tgene | COL19A1 | chr6:70506704 | chr6:70778314 | ENST00000322773 | 13 | 51 | 568_624 | 390.0 | 1143.0 | Domain | Note=Collagen-like 5 | |
Tgene | COL19A1 | chr6:70506704 | chr6:70778314 | ENST00000322773 | 13 | 51 | 626_678 | 390.0 | 1143.0 | Domain | Note=Collagen-like 6 | |
Tgene | COL19A1 | chr6:70506704 | chr6:70778314 | ENST00000322773 | 13 | 51 | 728_778 | 390.0 | 1143.0 | Domain | Note=Collagen-like 7 | |
Tgene | COL19A1 | chr6:70506704 | chr6:70778314 | ENST00000322773 | 13 | 51 | 779_814 | 390.0 | 1143.0 | Domain | Note=Collagen-like 8 | |
Tgene | COL19A1 | chr6:70506704 | chr6:70778314 | ENST00000322773 | 13 | 51 | 845_903 | 390.0 | 1143.0 | Domain | Note=Collagen-like 9 | |
Tgene | COL19A1 | chr6:70506704 | chr6:70778314 | ENST00000322773 | 13 | 51 | 904_947 | 390.0 | 1143.0 | Domain | Note=Collagen-like 10 | |
Tgene | COL19A1 | chr6:70506704 | chr6:70778314 | ENST00000322773 | 13 | 51 | 948_1004 | 390.0 | 1143.0 | Domain | Note=Collagen-like 11 | |
Tgene | COL19A1 | chr6:70506704 | chr6:70778314 | ENST00000322773 | 13 | 51 | 952_954 | 390.0 | 1143.0 | Motif | Cell attachment site | |
Tgene | COL19A1 | chr6:70506704 | chr6:70778314 | ENST00000322773 | 13 | 51 | 1054_1111 | 390.0 | 1143.0 | Region | Note=Triple-helical region 6 (COL6) | |
Tgene | COL19A1 | chr6:70506704 | chr6:70778314 | ENST00000322773 | 13 | 51 | 448_688 | 390.0 | 1143.0 | Region | Note=Triple-helical region 3 (COL3) | |
Tgene | COL19A1 | chr6:70506704 | chr6:70778314 | ENST00000322773 | 13 | 51 | 700_818 | 390.0 | 1143.0 | Region | Note=Triple-helical region 4 (COL4) | |
Tgene | COL19A1 | chr6:70506704 | chr6:70778314 | ENST00000322773 | 13 | 51 | 833_1012 | 390.0 | 1143.0 | Region | Note=Triple-helical region 5 (COL5) |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | LMBRD1 | chr6:70506704 | chr6:70778314 | ENST00000370570 | - | 1 | 15 | 122_144 | 0 | 468.0 | Topological domain | Cytoplasmic |
Hgene | LMBRD1 | chr6:70506704 | chr6:70778314 | ENST00000370570 | - | 1 | 15 | 166_188 | 0 | 468.0 | Topological domain | Extracellular |
Hgene | LMBRD1 | chr6:70506704 | chr6:70778314 | ENST00000370570 | - | 1 | 15 | 1_10 | 0 | 468.0 | Topological domain | Extracellular |
Hgene | LMBRD1 | chr6:70506704 | chr6:70778314 | ENST00000370570 | - | 1 | 15 | 210_305 | 0 | 468.0 | Topological domain | Cytoplasmic |
Hgene | LMBRD1 | chr6:70506704 | chr6:70778314 | ENST00000370570 | - | 1 | 15 | 327_364 | 0 | 468.0 | Topological domain | Extracellular |
Hgene | LMBRD1 | chr6:70506704 | chr6:70778314 | ENST00000370570 | - | 1 | 15 | 32_50 | 0 | 468.0 | Topological domain | Cytoplasmic |
Hgene | LMBRD1 | chr6:70506704 | chr6:70778314 | ENST00000370570 | - | 1 | 15 | 386_408 | 0 | 468.0 | Topological domain | Cytoplasmic |
Hgene | LMBRD1 | chr6:70506704 | chr6:70778314 | ENST00000370570 | - | 1 | 15 | 430_486 | 0 | 468.0 | Topological domain | Extracellular |
Hgene | LMBRD1 | chr6:70506704 | chr6:70778314 | ENST00000370570 | - | 1 | 15 | 508_540 | 0 | 468.0 | Topological domain | Cytoplasmic |
Hgene | LMBRD1 | chr6:70506704 | chr6:70778314 | ENST00000370570 | - | 1 | 15 | 72_100 | 0 | 468.0 | Topological domain | Extracellular |
Hgene | LMBRD1 | chr6:70506704 | chr6:70778314 | ENST00000370577 | - | 1 | 16 | 122_144 | 23.0 | 541.0 | Topological domain | Cytoplasmic |
Hgene | LMBRD1 | chr6:70506704 | chr6:70778314 | ENST00000370577 | - | 1 | 16 | 166_188 | 23.0 | 541.0 | Topological domain | Extracellular |
Hgene | LMBRD1 | chr6:70506704 | chr6:70778314 | ENST00000370577 | - | 1 | 16 | 210_305 | 23.0 | 541.0 | Topological domain | Cytoplasmic |
Hgene | LMBRD1 | chr6:70506704 | chr6:70778314 | ENST00000370577 | - | 1 | 16 | 327_364 | 23.0 | 541.0 | Topological domain | Extracellular |
Hgene | LMBRD1 | chr6:70506704 | chr6:70778314 | ENST00000370577 | - | 1 | 16 | 32_50 | 23.0 | 541.0 | Topological domain | Cytoplasmic |
Hgene | LMBRD1 | chr6:70506704 | chr6:70778314 | ENST00000370577 | - | 1 | 16 | 386_408 | 23.0 | 541.0 | Topological domain | Cytoplasmic |
Hgene | LMBRD1 | chr6:70506704 | chr6:70778314 | ENST00000370577 | - | 1 | 16 | 430_486 | 23.0 | 541.0 | Topological domain | Extracellular |
Hgene | LMBRD1 | chr6:70506704 | chr6:70778314 | ENST00000370577 | - | 1 | 16 | 508_540 | 23.0 | 541.0 | Topological domain | Cytoplasmic |
Hgene | LMBRD1 | chr6:70506704 | chr6:70778314 | ENST00000370577 | - | 1 | 16 | 72_100 | 23.0 | 541.0 | Topological domain | Extracellular |
Hgene | LMBRD1 | chr6:70506704 | chr6:70778314 | ENST00000370570 | - | 1 | 15 | 101_121 | 0 | 468.0 | Transmembrane | Helical%3B Name%3D3 |
Hgene | LMBRD1 | chr6:70506704 | chr6:70778314 | ENST00000370570 | - | 1 | 15 | 11_31 | 0 | 468.0 | Transmembrane | Helical%3B Name%3D1 |
Hgene | LMBRD1 | chr6:70506704 | chr6:70778314 | ENST00000370570 | - | 1 | 15 | 145_165 | 0 | 468.0 | Transmembrane | Helical%3B Name%3D4 |
Hgene | LMBRD1 | chr6:70506704 | chr6:70778314 | ENST00000370570 | - | 1 | 15 | 189_209 | 0 | 468.0 | Transmembrane | Helical%3B Name%3D5 |
Hgene | LMBRD1 | chr6:70506704 | chr6:70778314 | ENST00000370570 | - | 1 | 15 | 306_326 | 0 | 468.0 | Transmembrane | Helical%3B Name%3D6 |
Hgene | LMBRD1 | chr6:70506704 | chr6:70778314 | ENST00000370570 | - | 1 | 15 | 365_385 | 0 | 468.0 | Transmembrane | Helical%3B Name%3D7 |
Hgene | LMBRD1 | chr6:70506704 | chr6:70778314 | ENST00000370570 | - | 1 | 15 | 409_429 | 0 | 468.0 | Transmembrane | Helical%3B Name%3D8 |
Hgene | LMBRD1 | chr6:70506704 | chr6:70778314 | ENST00000370570 | - | 1 | 15 | 487_507 | 0 | 468.0 | Transmembrane | Helical%3B Name%3D9 |
Hgene | LMBRD1 | chr6:70506704 | chr6:70778314 | ENST00000370570 | - | 1 | 15 | 51_71 | 0 | 468.0 | Transmembrane | Helical%3B Name%3D2 |
Hgene | LMBRD1 | chr6:70506704 | chr6:70778314 | ENST00000370577 | - | 1 | 16 | 101_121 | 23.0 | 541.0 | Transmembrane | Helical%3B Name%3D3 |
Hgene | LMBRD1 | chr6:70506704 | chr6:70778314 | ENST00000370577 | - | 1 | 16 | 11_31 | 23.0 | 541.0 | Transmembrane | Helical%3B Name%3D1 |
Hgene | LMBRD1 | chr6:70506704 | chr6:70778314 | ENST00000370577 | - | 1 | 16 | 145_165 | 23.0 | 541.0 | Transmembrane | Helical%3B Name%3D4 |
Hgene | LMBRD1 | chr6:70506704 | chr6:70778314 | ENST00000370577 | - | 1 | 16 | 189_209 | 23.0 | 541.0 | Transmembrane | Helical%3B Name%3D5 |
Hgene | LMBRD1 | chr6:70506704 | chr6:70778314 | ENST00000370577 | - | 1 | 16 | 306_326 | 23.0 | 541.0 | Transmembrane | Helical%3B Name%3D6 |
Hgene | LMBRD1 | chr6:70506704 | chr6:70778314 | ENST00000370577 | - | 1 | 16 | 365_385 | 23.0 | 541.0 | Transmembrane | Helical%3B Name%3D7 |
Hgene | LMBRD1 | chr6:70506704 | chr6:70778314 | ENST00000370577 | - | 1 | 16 | 409_429 | 23.0 | 541.0 | Transmembrane | Helical%3B Name%3D8 |
Hgene | LMBRD1 | chr6:70506704 | chr6:70778314 | ENST00000370577 | - | 1 | 16 | 487_507 | 23.0 | 541.0 | Transmembrane | Helical%3B Name%3D9 |
Hgene | LMBRD1 | chr6:70506704 | chr6:70778314 | ENST00000370577 | - | 1 | 16 | 51_71 | 23.0 | 541.0 | Transmembrane | Helical%3B Name%3D2 |
Tgene | COL19A1 | chr6:70506704 | chr6:70778314 | ENST00000322773 | 13 | 51 | 292_349 | 390.0 | 1143.0 | Domain | Note=Collagen-like 1 | |
Tgene | COL19A1 | chr6:70506704 | chr6:70778314 | ENST00000322773 | 13 | 51 | 350_391 | 390.0 | 1143.0 | Domain | Note=Collagen-like 2 | |
Tgene | COL19A1 | chr6:70506704 | chr6:70778314 | ENST00000322773 | 13 | 51 | 50_234 | 390.0 | 1143.0 | Domain | Note=Laminin G-like | |
Tgene | COL19A1 | chr6:70506704 | chr6:70778314 | ENST00000322773 | 13 | 51 | 292_351 | 390.0 | 1143.0 | Region | Note=Triple-helical region 1 (COL1) | |
Tgene | COL19A1 | chr6:70506704 | chr6:70778314 | ENST00000322773 | 13 | 51 | 370_429 | 390.0 | 1143.0 | Region | Note=Triple-helical region 2 (COL2) |
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Fusion Gene Sequence for LMBRD1-COL19A1 |
For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones. |
>In-frame_ENST00000370577_ENST00000322773_TCGA-CR-7389_LMBRD1_chr6_70506704_-_COL19A1_chr6_70778314_length(transcript)=5259nt_BP=299nt ACTGCGTCCGCACGCGCCCCGCCCCTGAGCAGTCCTTGCTGCCCCGCCCCCGCTCGGCTCGCCGCCAGGGGACGCTAGTGGGTCCAGTCT CCTTGGCAACCACTTGCTCCTCCCCCTCCGCCCCTTTAACCTTTAGGGTGCGCGGGTGCAGTATATCTCGCGCTCTCTCCCCTTTCCCCC TCCCCTTTCCCCACCCCGGGCGCTCAGGTTGGTCTGGACCGGAAGCGAAGATGGCGACTTCTGGCGCGGCCTCGGCGGAGCTGGTGATCG GCTGGTGCATATTCGGCCTCTTACTACTGGGTTCCCTGGGGATACAAGGCCCCCAAGGTCCACCTGGAAAAGAGGGTCAGAGGGGAAGAC GAGGGAAAACAGGACCTCCCGGAAAACCAGGACCCCCAGGACCACCTGGACCTCCTGGAATACAAGGAATACACCAAACTCTTGGTGGAT ATTATAACAAGGATAACAAGGGAAATGATGAACATGAAGCTGGAGGCCTGAAAGGAGACAAGGGTGAAACTGGACTACCAGGATTTCCAG GGTCTGTTGGCCCTAAAGGACAAAAAGGAGAACCTGGAGAGCCTTTTACAAAAGGAGAAAAAGGAGATAGAGGAGAACCTGGGGTAATAG GATCACAGGGAGTAAAGGGTGAACCTGGAGATCCCGGACCCCCTGGTTTAATAGGAAGCCCAGGACTAAAGGGTCAGCAAGGATCTGCAG GCTCCATGGGACCCAGAGGACCGCCAGGAGATGTTGGATTGCCAGGAGAACATGGTATCCCAGGAAAACAAGGCATTAAAGGAGAAAAGG GAGATCCGGGTGGGATCATAGGCCCTCCCGGGCTTCCAGGTCCAAAAGGTGAGGCTGGTCCTCCAGGGAAAAGCCTGCCAGGGGAACCAG GATTAGATGGAAATCCTGGAGCACCTGGTCCACGTGGGCCAAAGGGTGAAAGAGGACTTCCAGGTGTTCACGGTTCCCCAGGGGACATAG GCCCACAAGGGATAGGAATTCCTGGCAGAACAGGCGCCCAAGGACCAGCTGGAGAGCCAGGTATTCAGGGTCCTCGAGGTCTCCCTGGGT TGCCAGGAACTCCAGGGACTCCAGGGAATGATGGAGTTCCAGGGAGAGATGGAAAGCCAGGCCTGCCAGGCCCCCCAGGTGACCCGATTG CACTTCCTCTCTTGGGAGACATCGGTGCTTTGCTCAAGAATTTCTGTGGCAACTGCCAAGCCAGTGTCCCAGGGCTGAAAAGCAACAAAG GAGAAGAAGGAGGTGCTGGTGAGCCTGGAAAGTATGATTCCATGGCCCGGAAGGGTGATATAGGGCCACGGGGTCCTCCAGGAATCCCAG GAAGAGAGGGACCAAAGGGAAGCAAAGGAGAGCGGGGCTACCCTGGGATACCTGGGGAGAAAGGCGATGAGGGTCTTCAAGGAATTCCAG GCATTCCAGGTGCTCCAGGCCCGACTGGACCCCCTGGCTTAATGGGAAGAACTGGACATCCTGGTCCCACAGGAGCAAAAGGTGAAAAGG GCAGCGACGGACCCCCTGGGAAACCCGGACCACCTGGACCACCTGGTATTCCATTTAATGAACGAAACGGCATGAGCAGTTTATATAAAA TTAAGGGAGGTGTGAATGTTCCCAGTTACCCAGGGCCACCCGGTCCTCCTGGCCCAAAAGGCGATCCTGGCCCAGTGGGAGAGCCTGGTG CAATGGGGTTGCCAGGATTAGAAGGATTTCCAGGTGTAAAGGGAGATCGAGGCCCAGCAGGTCCCCCAGGAATAGCAGGGATGTCGGGAA AACCTGGTGCCCCAGGGCCTCCAGGAGTTCCAGGGGAACCGGGTGAGAGAGGACCTGTTGGAGATATAGGTTTCCCTGGACCAGAAGGAC CCTCAGGAAAGCCAGGAATAAATGGAAAAGATGGAATACCAGGTGCTCAGGGCATCATGGGTAAGCCTGGAGACAGAGGCCCCAAAGGAG AACGTGGTGATCAGGGGATTCCAGGAGACAGAGGCTCACAAGGTGAACGGGGAAAACCAGGCCTTACAGGCATGAAGGGGGCCATCGGTC CTATGGGTCCACCAGGAAACAAGGGCTCCATGGGATCCCCTGGCCACCAAGGCCCTCCAGGCTCTCCAGGCATCCCTGGCATTCCGGCTG ATGCAGTTTCATTTGAAGAAATAAAGAAGTATATTAATCAAGAGGTCCTAAGGATTTTTGAAGAGAGGATGGCTGTATTCCTATCCCAGC TCAAGCTGCCAGCAGCAATGTTGGCTGCCCAAGCTTATGGGAGACCTGGGCCACCAGGGAAGGATGGGTTGCCTGGGCCACCAGGAGACC CTGGACCCCAAGGCTACAGAGGACAGAAGGGAGAAAGAGGTGAACCTGGAATTGGGCTGCCAGGGAGTCCAGGTCTTCCTGGGACTTCAG CTCTGGGTTTGCCAGGCTCACCAGGTGCCCCAGGCCCACAGGGCCCCCCAGGACCCAGTGGAAGATGTAACCCAGAAGATTGCCTCTATC CTGTGTCTCATGCCCATCAGCGCACAGGTGGGAATTGAACACACCTGAAGAAGACTTGGTTCCTGGTAACATTTCCTTGCCACTGGAGCT CTCTTAATACCGTCAAACCCTCATCATCTGTGGGTTGCTTTTTTTTTTTTTTTTTTTTTTTGGGAGTAAGCCAGGCATTAAAAGCAACCG TTTGAATCCTATTCCTATAGCAATTGCAAATCAGCATTTTTTGATTTTTCCCAAATTCATTCCATATGTTTTGCTTTACAATTGCTATGA TTTTTACTCAGAGTTTTATATGAAATATGCAAGTAAATCTTATCGTTAGTTCTTCTTCAAAAGGAAATTGCATCTTGTGACTTAGTAGAC TGATGATGATATCCATTTTGTAGACTCATCAACATGTGGTTGGCCTTTGATTTCTGAATTTTAAAGTTTCAGACTTATCTTTTCCTTGGT GTTTAAATTTACTATCATTGCTAAACATCTCGTCAACTTTTTTGATATAGTGCATTGCTCCTGTTGAATGTTTTTTGACTACTTTTTATA ACTTAAGAATTTTTATACCATCTACATCTATCCTACTTATGCAGAAAAATAGGCAATAAGAACTTCATTTTACAATTTAGTTTTCAAAAA AAAAATGCAGGAAACTGTTTTATCAGGGAGCCCAAACACCCAGCATAGCCAACTACTGAAATGATTTTGTTAATTCTGTATAATGAGCTC AATTCAAAGCAATCACCACTGGCATGAATAAGTACTGCATGAAAAGGGAGTATCAAATTCCAGTTTTGTATGAGTTCTGCAAAAAAAGCC TAATATTCTGTGGTCCCCTCACTCAGTCTCTCATTTGGTAAACAGAAAGCTGTTTTCCCTACAAGGTGCTTGGTGGTGAAGCCACCAAGC TGTCTTTGGTACTCTTAAAGCTTCAGTGGCCTAGCAAGATCTTTGGGCCCTTGTATCCATTATCCTTATGACCTCATCACCCTCAGACTT TAAGACAAGAAGCCACCATCAAAACAAAGGATGGGATACGTATAGAATGGACTCACTTGTCCTAGAAGATGAATGTGTAGTGTCAGCAAA TGCATGTTAAGAAGGTGAAGCCCAAAAGCTCTTAAGGAGAATTGTATTTCTCCAGAAGCTGCAGCAAGAGGTACAGCTCAACAAAGGAAA ACCACAGGACTGGATATGCAACTAGTGCTCAGACCAAAGAGTTCACACCCACTCTAAAACCATGTCCTCTGAAAAGAAACAAAAATACAG TGATCATCAAATGCCTAAACAGTCTTTCTGTTGGTTAGCTGTACATTCATTGAGGAACTGTTGATTGGCAGGCACTGATTCTCTAGAACA CTGGGCATGAGGATGTTGCAGAAATCTAGATGGTGGGTCCCACAGATGTGAGAACATGCTGCAAGAGCCTGCCAGCCACAGCAATCAGGA CTCACAGCTCTTCAAGGAGCAGTGCAGATTTCAATTTGGCTAAAACAGGATGATTGCTTTTGTCTGTTTACTGAAAAATGAGTTTAGAAA GGCTAGCCCACTGACATTGGAAAAAGCTGTGAACAGAGTTGTGTCTGAGGAATGTGCCTAATTTAAGGCAGGGTTTGTTCCAATGCATCC GTGATTTGAACCGGTTTTCATTATAGATTAATGAACTGCTGGTCAGGTACTGTCTACAATGGCTGTGCATACCTATAACATTTTAGGTAT TTCATATTGAATTATGCTGTATATTTCAATTCCAAGTTTATTTATTTTCCAAGGTTATTTTATTTATTGTAAGCATTTTGACATTGATTT TTTTTTTTTCGTTTTCTTTCTTGTGCAATACCTACAATGGTGCTGTGTTTTAAACTTACACAATTGGGACATACGTATGTGTTTTCTTAG TAAAATGGTAATTTATCCCGAAAAAGTGTACATAGATCTAAAATTTGGTGCTATGTGTATATCTTGAGCTTTTAATTTGTTGAATTTTCT AAACGCTTACAACTTATCTGCCACTCATATTAATTTACTTGAATTTGTCATAAAGCTAAATATTTTATATGTTTTCAAAGATTATTTTTT CATATTAATAGGTTGTTTATCTTTTTGCCTGTTTGCTAATTTAAAAATATTTATTTTATCATTTTAATGTTTTCATGGACTTTTTTGCTG ATGGTAATCAACTTTTTTTGTTTTTTGGTTTTTGAGTTGTTCTTGTCATAGACATAAAAAGACAATTCATTTTCTTGTTTTATTAACTCT GTTCATTTTTATTCTACAAAATATGTCATGCATTCTTTCTTATGAATTGTATATTTAGAAATCTTTCTAAATACCATTAAGGCTTGACTG GTTAATTCCTATTTCAAGGATTTGGATTTATTCAGGTAATTTGATGGGATGGGGAAATATAATATTGTGTGATGCATATTACAAAGTGGA CTTGTCACAATGACACAAACTCATTTTTTGTAACTGGGAAATATGACTAAATTTGACGTAACTAGAGAAACAAGGCTGTATCCACATGGT ACAAGCCTTTCTCACCCTACTCTATTATTTACCTTCAGATACTTTTTCCTGCCTCAGCTCTGTACACATGATATGCAACAAAGGGCAGCA AGAAATGCTGGGTCCACCTAATTTAACACAAAATGAAGTTGAGATTCGGCAGTTGCCCAATTCCTTTAATAAAAAGAAACTAAATAATTT >In-frame_ENST00000370577_ENST00000322773_TCGA-CR-7389_LMBRD1_chr6_70506704_-_COL19A1_chr6_70778314_length(amino acids)=840AA_start in transcript=35_stop in transcript=2557 MLPRPRSARRQGTLVGPVSLATTCSSPSAPLTFRVRGCSISRALSPFPLPFPHPGRSGWSGPEAKMATSGAASAELVIGWCIFGLLLLGS LGIQGPQGPPGKEGQRGRRGKTGPPGKPGPPGPPGPPGIQGIHQTLGGYYNKDNKGNDEHEAGGLKGDKGETGLPGFPGSVGPKGQKGEP GEPFTKGEKGDRGEPGVIGSQGVKGEPGDPGPPGLIGSPGLKGQQGSAGSMGPRGPPGDVGLPGEHGIPGKQGIKGEKGDPGGIIGPPGL PGPKGEAGPPGKSLPGEPGLDGNPGAPGPRGPKGERGLPGVHGSPGDIGPQGIGIPGRTGAQGPAGEPGIQGPRGLPGLPGTPGTPGNDG VPGRDGKPGLPGPPGDPIALPLLGDIGALLKNFCGNCQASVPGLKSNKGEEGGAGEPGKYDSMARKGDIGPRGPPGIPGREGPKGSKGER GYPGIPGEKGDEGLQGIPGIPGAPGPTGPPGLMGRTGHPGPTGAKGEKGSDGPPGKPGPPGPPGIPFNERNGMSSLYKIKGGVNVPSYPG PPGPPGPKGDPGPVGEPGAMGLPGLEGFPGVKGDRGPAGPPGIAGMSGKPGAPGPPGVPGEPGERGPVGDIGFPGPEGPSGKPGINGKDG IPGAQGIMGKPGDRGPKGERGDQGIPGDRGSQGERGKPGLTGMKGAIGPMGPPGNKGSMGSPGHQGPPGSPGIPGIPADAVSFEEIKKYI NQEVLRIFEERMAVFLSQLKLPAAMLAAQAYGRPGPPGKDGLPGPPGDPGPQGYRGQKGERGEPGIGLPGSPGLPGTSALGLPGSPGAPG -------------------------------------------------------------- >In-frame_ENST00000370577_ENST00000393344_TCGA-CR-7389_LMBRD1_chr6_70506704_-_COL19A1_chr6_70778314_length(transcript)=5259nt_BP=299nt ACTGCGTCCGCACGCGCCCCGCCCCTGAGCAGTCCTTGCTGCCCCGCCCCCGCTCGGCTCGCCGCCAGGGGACGCTAGTGGGTCCAGTCT CCTTGGCAACCACTTGCTCCTCCCCCTCCGCCCCTTTAACCTTTAGGGTGCGCGGGTGCAGTATATCTCGCGCTCTCTCCCCTTTCCCCC TCCCCTTTCCCCACCCCGGGCGCTCAGGTTGGTCTGGACCGGAAGCGAAGATGGCGACTTCTGGCGCGGCCTCGGCGGAGCTGGTGATCG GCTGGTGCATATTCGGCCTCTTACTACTGGGTTCCCTGGGGATACAAGGCCCCCAAGGTCCACCTGGAAAAGAGGGTCAGAGGGGAAGAC GAGGGAAAACAGGACCTCCCGGAAAACCAGGACCCCCAGGACCACCTGGACCTCCTGGAATACAAGGAATACACCAAACTCTTGGTGGAT ATTATAACAAGGATAACAAGGGAAATGATGAACATGAAGCTGGAGGCCTGAAAGGAGACAAGGGTGAAACTGGACTACCAGGATTTCCAG GGTCTGTTGGCCCTAAAGGACAAAAAGGAGAACCTGGAGAGCCTTTTACAAAAGGAGAAAAAGGAGATAGAGGAGAACCTGGGGTAATAG GATCACAGGGAGTAAAGGGTGAACCTGGAGATCCCGGACCCCCTGGTTTAATAGGAAGCCCAGGACTAAAGGGTCAGCAAGGATCTGCAG GCTCCATGGGACCCAGAGGACCGCCAGGAGATGTTGGATTGCCAGGAGAACATGGTATCCCAGGAAAACAAGGCATTAAAGGAGAAAAGG GAGATCCGGGTGGGATCATAGGCCCTCCCGGGCTTCCAGGTCCAAAAGGTGAGGCTGGTCCTCCAGGGAAAAGCCTGCCAGGGGAACCAG GATTAGATGGAAATCCTGGAGCACCTGGTCCACGTGGGCCAAAGGGTGAAAGAGGACTTCCAGGTGTTCACGGTTCCCCAGGGGACATAG GCCCACAAGGGATAGGAATTCCTGGCAGAACAGGCGCCCAAGGACCAGCTGGAGAGCCAGGTATTCAGGGTCCTCGAGGTCTCCCTGGGT TGCCAGGAACTCCAGGGACTCCAGGGAATGATGGAGTTCCAGGGAGAGATGGAAAGCCAGGCCTGCCAGGCCCCCCAGGTGACCCGATTG CACTTCCTCTCTTGGGAGACATCGGTGCTTTGCTCAAGAATTTCTGTGGCAACTGCCAAGCCAGTGTCCCAGGGCTGAAAAGCAACAAAG GAGAAGAAGGAGGTGCTGGTGAGCCTGGAAAGTATGATTCCATGGCCCGGAAGGGTGATATAGGGCCACGGGGTCCTCCAGGAATCCCAG GAAGAGAGGGACCAAAGGGAAGCAAAGGAGAGCGGGGCTACCCTGGGATACCTGGGGAGAAAGGCGATGAGGGTCTTCAAGGAATTCCAG GCATTCCAGGTGCTCCAGGCCCGACTGGACCCCCTGGCTTAATGGGAAGAACTGGACATCCTGGTCCCACAGGAGCAAAAGGTGAAAAGG GCAGCGACGGACCCCCTGGGAAACCCGGACCACCTGGACCACCTGGTATTCCATTTAATGAACGAAACGGCATGAGCAGTTTATATAAAA TTAAGGGAGGTGTGAATGTTCCCAGTTACCCAGGGCCACCCGGTCCTCCTGGCCCAAAAGGCGATCCTGGCCCAGTGGGAGAGCCTGGTG CAATGGGGTTGCCAGGATTAGAAGGATTTCCAGGTGTAAAGGGAGATCGAGGCCCAGCAGGTCCCCCAGGAATAGCAGGGATGTCGGGAA AACCTGGTGCCCCAGGGCCTCCAGGAGTTCCAGGGGAACCGGGTGAGAGAGGACCTGTTGGAGATATAGGTTTCCCTGGACCAGAAGGAC CCTCAGGAAAGCCAGGAATAAATGGAAAAGATGGAATACCAGGTGCTCAGGGCATCATGGGTAAGCCTGGAGACAGAGGCCCCAAAGGAG AACGTGGTGATCAGGGGATTCCAGGAGACAGAGGCTCACAAGGTGAACGGGGAAAACCAGGCCTTACAGGCATGAAGGGGGCCATCGGTC CTATGGGTCCACCAGGAAACAAGGGCTCCATGGGATCCCCTGGCCACCAAGGCCCTCCAGGCTCTCCAGGCATCCCTGGCATTCCGGCTG ATGCAGTTTCATTTGAAGAAATAAAGAAGTATATTAATCAAGAGGTCCTAAGGATTTTTGAAGAGAGGATGGCTGTATTCCTATCCCAGC TCAAGCTGCCAGCAGCAATGTTGGCTGCCCAAGCTTATGGGAGACCTGGGCCACCAGGGAAGGATGGGTTGCCTGGGCCACCAGGAGACC CTGGACCCCAAGGCTACAGAGGACAGAAGGGAGAAAGAGGTGAACCTGGAATTGGGCTGCCAGGGAGTCCAGGTCTTCCTGGGACTTCAG CTCTGGGTTTGCCAGGCTCACCAGGTGCCCCAGGCCCACAGGGCCCCCCAGGACCCAGTGGAAGATGTAACCCAGAAGATTGCCTCTATC CTGTGTCTCATGCCCATCAGCGCACAGGTGGGAATTGAACACACCTGAAGAAGACTTGGTTCCTGGTAACATTTCCTTGCCACTGGAGCT CTCTTAATACCGTCAAACCCTCATCATCTGTGGGTTGCTTTTTTTTTTTTTTTTTTTTTTTGGGAGTAAGCCAGGCATTAAAAGCAACCG TTTGAATCCTATTCCTATAGCAATTGCAAATCAGCATTTTTTGATTTTTCCCAAATTCATTCCATATGTTTTGCTTTACAATTGCTATGA TTTTTACTCAGAGTTTTATATGAAATATGCAAGTAAATCTTATCGTTAGTTCTTCTTCAAAAGGAAATTGCATCTTGTGACTTAGTAGAC TGATGATGATATCCATTTTGTAGACTCATCAACATGTGGTTGGCCTTTGATTTCTGAATTTTAAAGTTTCAGACTTATCTTTTCCTTGGT GTTTAAATTTACTATCATTGCTAAACATCTCGTCAACTTTTTTGATATAGTGCATTGCTCCTGTTGAATGTTTTTTGACTACTTTTTATA ACTTAAGAATTTTTATACCATCTACATCTATCCTACTTATGCAGAAAAATAGGCAATAAGAACTTCATTTTACAATTTAGTTTTCAAAAA AAAAATGCAGGAAACTGTTTTATCAGGGAGCCCAAACACCCAGCATAGCCAACTACTGAAATGATTTTGTTAATTCTGTATAATGAGCTC AATTCAAAGCAATCACCACTGGCATGAATAAGTACTGCATGAAAAGGGAGTATCAAATTCCAGTTTTGTATGAGTTCTGCAAAAAAAGCC TAATATTCTGTGGTCCCCTCACTCAGTCTCTCATTTGGTAAACAGAAAGCTGTTTTCCCTACAAGGTGCTTGGTGGTGAAGCCACCAAGC TGTCTTTGGTACTCTTAAAGCTTCAGTGGCCTAGCAAGATCTTTGGGCCCTTGTATCCATTATCCTTATGACCTCATCACCCTCAGACTT TAAGACAAGAAGCCACCATCAAAACAAAGGATGGGATACGTATAGAATGGACTCACTTGTCCTAGAAGATGAATGTGTAGTGTCAGCAAA TGCATGTTAAGAAGGTGAAGCCCAAAAGCTCTTAAGGAGAATTGTATTTCTCCAGAAGCTGCAGCAAGAGGTACAGCTCAACAAAGGAAA ACCACAGGACTGGATATGCAACTAGTGCTCAGACCAAAGAGTTCACACCCACTCTAAAACCATGTCCTCTGAAAAGAAACAAAAATACAG TGATCATCAAATGCCTAAACAGTCTTTCTGTTGGTTAGCTGTACATTCATTGAGGAACTGTTGATTGGCAGGCACTGATTCTCTAGAACA CTGGGCATGAGGATGTTGCAGAAATCTAGATGGTGGGTCCCACAGATGTGAGAACATGCTGCAAGAGCCTGCCAGCCACAGCAATCAGGA CTCACAGCTCTTCAAGGAGCAGTGCAGATTTCAATTTGGCTAAAACAGGATGATTGCTTTTGTCTGTTTACTGAAAAATGAGTTTAGAAA GGCTAGCCCACTGACATTGGAAAAAGCTGTGAACAGAGTTGTGTCTGAGGAATGTGCCTAATTTAAGGCAGGGTTTGTTCCAATGCATCC GTGATTTGAACCGGTTTTCATTATAGATTAATGAACTGCTGGTCAGGTACTGTCTACAATGGCTGTGCATACCTATAACATTTTAGGTAT TTCATATTGAATTATGCTGTATATTTCAATTCCAAGTTTATTTATTTTCCAAGGTTATTTTATTTATTGTAAGCATTTTGACATTGATTT TTTTTTTTTCGTTTTCTTTCTTGTGCAATACCTACAATGGTGCTGTGTTTTAAACTTACACAATTGGGACATACGTATGTGTTTTCTTAG TAAAATGGTAATTTATCCCGAAAAAGTGTACATAGATCTAAAATTTGGTGCTATGTGTATATCTTGAGCTTTTAATTTGTTGAATTTTCT AAACGCTTACAACTTATCTGCCACTCATATTAATTTACTTGAATTTGTCATAAAGCTAAATATTTTATATGTTTTCAAAGATTATTTTTT CATATTAATAGGTTGTTTATCTTTTTGCCTGTTTGCTAATTTAAAAATATTTATTTTATCATTTTAATGTTTTCATGGACTTTTTTGCTG ATGGTAATCAACTTTTTTTGTTTTTTGGTTTTTGAGTTGTTCTTGTCATAGACATAAAAAGACAATTCATTTTCTTGTTTTATTAACTCT GTTCATTTTTATTCTACAAAATATGTCATGCATTCTTTCTTATGAATTGTATATTTAGAAATCTTTCTAAATACCATTAAGGCTTGACTG GTTAATTCCTATTTCAAGGATTTGGATTTATTCAGGTAATTTGATGGGATGGGGAAATATAATATTGTGTGATGCATATTACAAAGTGGA CTTGTCACAATGACACAAACTCATTTTTTGTAACTGGGAAATATGACTAAATTTGACGTAACTAGAGAAACAAGGCTGTATCCACATGGT ACAAGCCTTTCTCACCCTACTCTATTATTTACCTTCAGATACTTTTTCCTGCCTCAGCTCTGTACACATGATATGCAACAAAGGGCAGCA AGAAATGCTGGGTCCACCTAATTTAACACAAAATGAAGTTGAGATTCGGCAGTTGCCCAATTCCTTTAATAAAAAGAAACTAAATAATTT >In-frame_ENST00000370577_ENST00000393344_TCGA-CR-7389_LMBRD1_chr6_70506704_-_COL19A1_chr6_70778314_length(amino acids)=840AA_start in transcript=35_stop in transcript=2557 MLPRPRSARRQGTLVGPVSLATTCSSPSAPLTFRVRGCSISRALSPFPLPFPHPGRSGWSGPEAKMATSGAASAELVIGWCIFGLLLLGS LGIQGPQGPPGKEGQRGRRGKTGPPGKPGPPGPPGPPGIQGIHQTLGGYYNKDNKGNDEHEAGGLKGDKGETGLPGFPGSVGPKGQKGEP GEPFTKGEKGDRGEPGVIGSQGVKGEPGDPGPPGLIGSPGLKGQQGSAGSMGPRGPPGDVGLPGEHGIPGKQGIKGEKGDPGGIIGPPGL PGPKGEAGPPGKSLPGEPGLDGNPGAPGPRGPKGERGLPGVHGSPGDIGPQGIGIPGRTGAQGPAGEPGIQGPRGLPGLPGTPGTPGNDG VPGRDGKPGLPGPPGDPIALPLLGDIGALLKNFCGNCQASVPGLKSNKGEEGGAGEPGKYDSMARKGDIGPRGPPGIPGREGPKGSKGER GYPGIPGEKGDEGLQGIPGIPGAPGPTGPPGLMGRTGHPGPTGAKGEKGSDGPPGKPGPPGPPGIPFNERNGMSSLYKIKGGVNVPSYPG PPGPPGPKGDPGPVGEPGAMGLPGLEGFPGVKGDRGPAGPPGIAGMSGKPGAPGPPGVPGEPGERGPVGDIGFPGPEGPSGKPGINGKDG IPGAQGIMGKPGDRGPKGERGDQGIPGDRGSQGERGKPGLTGMKGAIGPMGPPGNKGSMGSPGHQGPPGSPGIPGIPADAVSFEEIKKYI NQEVLRIFEERMAVFLSQLKLPAAMLAAQAYGRPGPPGKDGLPGPPGDPGPQGYRGQKGERGEPGIGLPGSPGLPGTSALGLPGSPGAPG -------------------------------------------------------------- |
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Fusion Gene PPI Analysis for LMBRD1-COL19A1 |
Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in |
Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
Hgene | Hgene's interactors | Tgene | Tgene's interactors |
- Retained PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
- Lost PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
- Retained PPIs, but lost function due to frame-shift fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Related Drugs for LMBRD1-COL19A1 |
Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.8 2021-05-08) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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Related Diseases for LMBRD1-COL19A1 |
Diseases associated with fusion partners. (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Hgene | LMBRD1 | C1848578 | METHYLMALONIC ACIDURIA AND HOMOCYSTINURIA, cblF TYPE (disorder) | 2 | CTD_human;GENOMICS_ENGLAND |
Tgene | COL19A1 | C0030567 | Parkinson Disease | 1 | CTD_human |