|
Fusion Gene Summary | |
Fusion Gene ORF analysis | |
Fusion Genomic Features | |
Fusion Protein Features | |
Fusion Gene Sequence | |
Fusion Gene PPI analysis | |
Related Drugs | |
Related Diseases |
Fusion gene:LMF1-CCDC154 (FusionGDB2 ID:45528) |
Fusion Gene Summary for LMF1-CCDC154 |
Fusion gene summary |
Fusion gene information | Fusion gene name: LMF1-CCDC154 | Fusion gene ID: 45528 | Hgene | Tgene | Gene symbol | LMF1 | CCDC154 | Gene ID | 64788 | 645811 |
Gene name | lipase maturation factor 1 | coiled-coil domain containing 154 | |
Synonyms | C16orf26|HMFN1876|JFP11|TMEM112|TMEM112A | C16orf29 | |
Cytomap | 16p13.3 | 16p13.3 | |
Type of gene | protein-coding | protein-coding | |
Description | lipase maturation factor 1transmembrane protein 112 | coiled-coil domain-containing protein 154 | |
Modification date | 20200313 | 20200313 | |
UniProtAcc | Q96S06 | . | |
Ensembl transtripts involved in fusion gene | ENST00000262301, ENST00000399843, ENST00000543238, ENST00000568897, ENST00000568268, ENST00000539379, | ENST00000409671, ENST00000389176, | |
Fusion gene scores | * DoF score | 1 X 1 X 1=1 | 1 X 1 X 1=1 |
# samples | 1 | 1 | |
** MAII score | log2(1/1*10)=3.32192809488736 | log2(1/1*10)=3.32192809488736 | |
Context | PubMed: LMF1 [Title/Abstract] AND CCDC154 [Title/Abstract] AND fusion [Title/Abstract] | ||
Most frequent breakpoint | LMF1(960931)-CCDC154(1489127), # samples:2 | ||
Anticipated loss of major functional domain due to fusion event. |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
Partner | Gene | GO ID | GO term | PubMed ID |
Fusion gene breakpoints across LMF1 (5'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
Fusion gene breakpoints across CCDC154 (3'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Source | Disease | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
ChimerDB4 | LGG | TCGA-DU-A6S2-01A | LMF1 | chr16 | 960931 | - | CCDC154 | chr16 | 1489127 | - |
ChimerDB4 | LGG | TCGA-DU-A6S2-01A | LMF1 | chr16 | 960931 | - | CCDC154 | chr16 | 1489127 | - |
Top |
Fusion Gene ORF analysis for LMF1-CCDC154 |
Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
In-frame | ENST00000262301 | ENST00000409671 | LMF1 | chr16 | 960931 | - | CCDC154 | chr16 | 1489127 | - |
In-frame | ENST00000262301 | ENST00000389176 | LMF1 | chr16 | 960931 | - | CCDC154 | chr16 | 1489127 | - |
In-frame | ENST00000399843 | ENST00000409671 | LMF1 | chr16 | 960931 | - | CCDC154 | chr16 | 1489127 | - |
In-frame | ENST00000399843 | ENST00000389176 | LMF1 | chr16 | 960931 | - | CCDC154 | chr16 | 1489127 | - |
intron-3CDS | ENST00000543238 | ENST00000409671 | LMF1 | chr16 | 960931 | - | CCDC154 | chr16 | 1489127 | - |
intron-3CDS | ENST00000543238 | ENST00000389176 | LMF1 | chr16 | 960931 | - | CCDC154 | chr16 | 1489127 | - |
In-frame | ENST00000568897 | ENST00000409671 | LMF1 | chr16 | 960931 | - | CCDC154 | chr16 | 1489127 | - |
In-frame | ENST00000568897 | ENST00000389176 | LMF1 | chr16 | 960931 | - | CCDC154 | chr16 | 1489127 | - |
intron-3CDS | ENST00000568268 | ENST00000409671 | LMF1 | chr16 | 960931 | - | CCDC154 | chr16 | 1489127 | - |
intron-3CDS | ENST00000568268 | ENST00000389176 | LMF1 | chr16 | 960931 | - | CCDC154 | chr16 | 1489127 | - |
3UTR-3CDS | ENST00000539379 | ENST00000409671 | LMF1 | chr16 | 960931 | - | CCDC154 | chr16 | 1489127 | - |
3UTR-3CDS | ENST00000539379 | ENST00000389176 | LMF1 | chr16 | 960931 | - | CCDC154 | chr16 | 1489127 | - |
ORFfinder result based on the fusion transcript sequence of in-frame fusion genes. |
Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | Seq length (transcript) | BP loci (transcript) | Predicted start (transcript) | Predicted stop (transcript) | Seq length (amino acids) |
ENST00000262301 | LMF1 | chr16 | 960931 | - | ENST00000409671 | CCDC154 | chr16 | 1489127 | - | 2034 | 682 | 19 | 2010 | 663 |
ENST00000262301 | LMF1 | chr16 | 960931 | - | ENST00000389176 | CCDC154 | chr16 | 1489127 | - | 2052 | 682 | 19 | 2031 | 670 |
ENST00000399843 | LMF1 | chr16 | 960931 | - | ENST00000409671 | CCDC154 | chr16 | 1489127 | - | 2017 | 665 | 2 | 1993 | 663 |
ENST00000399843 | LMF1 | chr16 | 960931 | - | ENST00000389176 | CCDC154 | chr16 | 1489127 | - | 2035 | 665 | 2 | 2014 | 670 |
ENST00000568897 | LMF1 | chr16 | 960931 | - | ENST00000409671 | CCDC154 | chr16 | 1489127 | - | 1894 | 542 | 386 | 1870 | 494 |
ENST00000568897 | LMF1 | chr16 | 960931 | - | ENST00000389176 | CCDC154 | chr16 | 1489127 | - | 1912 | 542 | 386 | 1891 | 501 |
DeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated. |
Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | No-coding score | Coding score |
ENST00000262301 | ENST00000409671 | LMF1 | chr16 | 960931 | - | CCDC154 | chr16 | 1489127 | - | 0.043009564 | 0.9569905 |
ENST00000262301 | ENST00000389176 | LMF1 | chr16 | 960931 | - | CCDC154 | chr16 | 1489127 | - | 0.04437499 | 0.955625 |
ENST00000399843 | ENST00000409671 | LMF1 | chr16 | 960931 | - | CCDC154 | chr16 | 1489127 | - | 0.0427162 | 0.9572838 |
ENST00000399843 | ENST00000389176 | LMF1 | chr16 | 960931 | - | CCDC154 | chr16 | 1489127 | - | 0.04399601 | 0.95600396 |
ENST00000568897 | ENST00000409671 | LMF1 | chr16 | 960931 | - | CCDC154 | chr16 | 1489127 | - | 0.016946755 | 0.98305327 |
ENST00000568897 | ENST00000389176 | LMF1 | chr16 | 960931 | - | CCDC154 | chr16 | 1489127 | - | 0.017507967 | 0.98249197 |
Top |
Fusion Genomic Features for LMF1-CCDC154 |
FusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints. |
Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | 1-p | p (fusion gene breakpoint) |
Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page. |
Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page. |
Top |
Fusion Protein Features for LMF1-CCDC154 |
Go to FGviewer for the breakpoints of chr16:960931-chr16:1489127 - FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels. |
Main function of each fusion partner protein. (from UniProt) |
Hgene | Tgene |
LMF1 | . |
FUNCTION: Involved in the maturation of specific proteins in the endoplasmic reticulum. Required for maturation and transport of active lipoprotein lipase (LPL) through the secretory pathway. Each LMF1 molecule chaperones 50 or more molecules of LPL. {ECO:0000250|UniProtKB:Q3U3R4, ECO:0000269|PubMed:24909692}. | FUNCTION: Might normally function as a transcriptional repressor. EWS-fusion-proteins (EFPS) may play a role in the tumorigenic process. They may disturb gene expression by mimicking, or interfering with the normal function of CTD-POLII within the transcription initiation complex. They may also contribute to an aberrant activation of the fusion protein target genes. |
Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | LMF1 | chr16:960931 | chr16:1489127 | ENST00000262301 | - | 4 | 11 | 152_207 | 221.0 | 568.0 | Topological domain | Cytoplasmic |
Hgene | LMF1 | chr16:960931 | chr16:1489127 | ENST00000262301 | - | 4 | 11 | 1_49 | 221.0 | 568.0 | Topological domain | Cytoplasmic |
Hgene | LMF1 | chr16:960931 | chr16:1489127 | ENST00000262301 | - | 4 | 11 | 73_127 | 221.0 | 568.0 | Topological domain | Lumenal |
Hgene | LMF1 | chr16:960931 | chr16:1489127 | ENST00000262301 | - | 4 | 11 | 128_151 | 221.0 | 568.0 | Transmembrane | Helical |
Hgene | LMF1 | chr16:960931 | chr16:1489127 | ENST00000262301 | - | 4 | 11 | 208_221 | 221.0 | 568.0 | Transmembrane | Helical |
Hgene | LMF1 | chr16:960931 | chr16:1489127 | ENST00000262301 | - | 4 | 11 | 50_72 | 221.0 | 568.0 | Transmembrane | Helical |
Tgene | CCDC154 | chr16:960931 | chr16:1489127 | ENST00000389176 | 5 | 17 | 384_410 | 225.0 | 675.0 | Coiled coil | Ontology_term=ECO:0000255 | |
Tgene | CCDC154 | chr16:960931 | chr16:1489127 | ENST00000389176 | 5 | 17 | 457_521 | 225.0 | 675.0 | Coiled coil | Ontology_term=ECO:0000255 |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | LMF1 | chr16:960931 | chr16:1489127 | ENST00000262301 | - | 4 | 11 | 222_292 | 221.0 | 568.0 | Topological domain | Lumenal |
Hgene | LMF1 | chr16:960931 | chr16:1489127 | ENST00000262301 | - | 4 | 11 | 322_367 | 221.0 | 568.0 | Topological domain | Cytoplasmic |
Hgene | LMF1 | chr16:960931 | chr16:1489127 | ENST00000262301 | - | 4 | 11 | 389_567 | 221.0 | 568.0 | Topological domain | Lumenal |
Hgene | LMF1 | chr16:960931 | chr16:1489127 | ENST00000262301 | - | 4 | 11 | 293_321 | 221.0 | 568.0 | Transmembrane | Helical |
Hgene | LMF1 | chr16:960931 | chr16:1489127 | ENST00000262301 | - | 4 | 11 | 368_388 | 221.0 | 568.0 | Transmembrane | Helical |
Tgene | CCDC154 | chr16:960931 | chr16:1489127 | ENST00000389176 | 5 | 17 | 215_302 | 225.0 | 675.0 | Coiled coil | Ontology_term=ECO:0000255 | |
Tgene | CCDC154 | chr16:960931 | chr16:1489127 | ENST00000389176 | 5 | 17 | 76_182 | 225.0 | 675.0 | Coiled coil | Ontology_term=ECO:0000255 |
Top |
Fusion Gene Sequence for LMF1-CCDC154 |
For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones. |
>In-frame_ENST00000262301_ENST00000409671_TCGA-DU-A6S2-01A_LMF1_chr16_960931_-_CCDC154_chr16_1489127_length(transcript)=2034nt_BP=682nt GAGTGCGCCCTCCCCGCACATGCGCCCTGACAGCCCAACAATGGCGGCGCCCGCGGAGTCGCTGAGGAGGCGGAAGACTGGGTACTCGGA TCCGGAGCCTGAGTCGCCGCCCGCGCCGGGGCGTGGCCCCGCAGGCTCTCCGGCCCATCTCCACACGGGCACCTTCTGGCTGACCCGGAT CGTGCTCCTGAAGGCCCTAGCCTTCGTGTACTTCGTGGCATTCCTGGTGGCTTTCCATCAGAACAAGCAGCTCATCGGTGACAGGGGGCT GCTTCCCTGCAGAGTGTTCCTGAAGAACTTCCAGCAGTACTTCCAGGACAGGACGAGCTGGGAAGTCTTCAGCTACATGCCCACCATCCT CTGGCTGATGGACTGGTCAGACATGAACTCCAACCTGGACTTGCTGGCTCTTCTCGGACTGGGCATCTCGTCTTTCGTACTGATCACGGG CTGCGCCAACATGCTTCTCATGGCTGCCCTGTGGGGCCTCTACATGTCCCTGGTTAATGTGGGCCATGTCTGGTACTCTTTCGGATGGGA GTCCCAGCTTCTGGAGACGGGGTTCCTGGGGATCTTCCTGTGCCCTCTGTGGACGCTGTCAAGGCTGCCCCAGCATACCCCCACATCCCG GATTGTCCTGTGGGGCTTCCGGTGGCTGATCTTCAGGATCATGCTTGGAGCAGCCCAGGTGACCAAGCTCGGCGAAGAGGTGAGCCTGCG CTTCCTGAAGAGGGAGGCCAAGCTGTGCGGCTTCCTGCAGAAGAGCTTCCTGGCCCTGGAGAAGAGAATGAAGGCCTCGGAGAGCTCACG GCTGAAGCTGGAGGGCAGCCTGCGGGGCGAGCTGGAGAGCCGGTGGGAGAAGCTTCGGGGGCTGATGGAGGAGCGCCTGCGGGCCCTGCA GGGGCAGCATGAGGAGAGCCACCTCCTGGAGCAGTGCCAGGGCCTGGATGCTGCCGTGGCCCAGCTGACCAAGTTTGTGCAGCAGAACCA GGCGTCGCTGAACCGTGTCCTACTGGCCGAGGAGAAAGCCTGGGACGCCAAGGGGCGCTTGGAGGAAAGCCGGGCTGGGGAGCTGGCCGC CTATGTGCAGGAGAACCTGGAGGCCGCACAGCTGGCTGGCGAGCTGGCCCGGCAGGAGATGCATGGAGAGCTGGTGCTGCTCCGAGAGAA GAGCCGGGCTCTGGAGGCATCCGTGGCGCAGCTGGCCGGGCAGTTAAAGGAGCTGAGTGGCCATCTCCCGGCTCTGAGCAGCCGGCTCGA TCTGCAGGAGCAGATGCTGGGCCTCAGGCTGTCCGAGGCAAAGACCGAATGGGAAGGTGCAGAGAGGAAGTCCCTGGAGGACCTGGCCAG GTGGCGGAAGGAGGTGACCGAACACCTGCGAGGGGTGCGGGAGAAGGTGGATGGCCTCCCCCAGCAGATAGAGAGTGTCTCCGACAAGTG CCTGCTTCATAAGAGCGACTCAGACCTCAGGATTTCCGCCGAAGGCAAGGCCAGGGAGTTCAAGGTTGGGGCCCTGCGGCAGGAGCTGGC CACGCTACTATCATCCGTGCAGCTGCTAAAGGAAGACAACCCTGGGCGGAAGATCGCGGAGATGCAGGGCAAGCTGGCCACGTTTCAGAA CCAAATAATGAAGCTGGAAAACTGCGTCCAGGCCAACAAGACCATCCAGAACCTCAGGTTCAACACTGAGGCCCGGCTGCGCACGCAGGA GATGGCCACCCTGTGGGAGAGTGTGCTCCGGCTGTGGAGTGAGGAGGGCCCGCGGACGCCGCTGGGCAGCTGGAAGGCGCTCCCATCCCT GGTGAGGCCGCGGGTCTTCATCAAGGACATGGCGCCTGGCAAGGTGGTGCCCATGAACTGCTGGGGCGTGTACCAGGCTGTGAGGTGGCT GCGCTGGAAGGCGTCCCTCATAAAGCTCAGGGCCCTGCGGAGGCCAGGAGGGGTCCTGGAGAAGCCCCACAGCCAGGAGCAGGTGCAGCA >In-frame_ENST00000262301_ENST00000409671_TCGA-DU-A6S2-01A_LMF1_chr16_960931_-_CCDC154_chr16_1489127_length(amino acids)=663AA_start in transcript=19_stop in transcript=2010 MRPDSPTMAAPAESLRRRKTGYSDPEPESPPAPGRGPAGSPAHLHTGTFWLTRIVLLKALAFVYFVAFLVAFHQNKQLIGDRGLLPCRVF LKNFQQYFQDRTSWEVFSYMPTILWLMDWSDMNSNLDLLALLGLGISSFVLITGCANMLLMAALWGLYMSLVNVGHVWYSFGWESQLLET GFLGIFLCPLWTLSRLPQHTPTSRIVLWGFRWLIFRIMLGAAQVTKLGEEVSLRFLKREAKLCGFLQKSFLALEKRMKASESSRLKLEGS LRGELESRWEKLRGLMEERLRALQGQHEESHLLEQCQGLDAAVAQLTKFVQQNQASLNRVLLAEEKAWDAKGRLEESRAGELAAYVQENL EAAQLAGELARQEMHGELVLLREKSRALEASVAQLAGQLKELSGHLPALSSRLDLQEQMLGLRLSEAKTEWEGAERKSLEDLARWRKEVT EHLRGVREKVDGLPQQIESVSDKCLLHKSDSDLRISAEGKAREFKVGALRQELATLLSSVQLLKEDNPGRKIAEMQGKLATFQNQIMKLE NCVQANKTIQNLRFNTEARLRTQEMATLWESVLRLWSEEGPRTPLGSWKALPSLVRPRVFIKDMAPGKVVPMNCWGVYQAVRWLRWKASL -------------------------------------------------------------- >In-frame_ENST00000262301_ENST00000389176_TCGA-DU-A6S2-01A_LMF1_chr16_960931_-_CCDC154_chr16_1489127_length(transcript)=2052nt_BP=682nt GAGTGCGCCCTCCCCGCACATGCGCCCTGACAGCCCAACAATGGCGGCGCCCGCGGAGTCGCTGAGGAGGCGGAAGACTGGGTACTCGGA TCCGGAGCCTGAGTCGCCGCCCGCGCCGGGGCGTGGCCCCGCAGGCTCTCCGGCCCATCTCCACACGGGCACCTTCTGGCTGACCCGGAT CGTGCTCCTGAAGGCCCTAGCCTTCGTGTACTTCGTGGCATTCCTGGTGGCTTTCCATCAGAACAAGCAGCTCATCGGTGACAGGGGGCT GCTTCCCTGCAGAGTGTTCCTGAAGAACTTCCAGCAGTACTTCCAGGACAGGACGAGCTGGGAAGTCTTCAGCTACATGCCCACCATCCT CTGGCTGATGGACTGGTCAGACATGAACTCCAACCTGGACTTGCTGGCTCTTCTCGGACTGGGCATCTCGTCTTTCGTACTGATCACGGG CTGCGCCAACATGCTTCTCATGGCTGCCCTGTGGGGCCTCTACATGTCCCTGGTTAATGTGGGCCATGTCTGGTACTCTTTCGGATGGGA GTCCCAGCTTCTGGAGACGGGGTTCCTGGGGATCTTCCTGTGCCCTCTGTGGACGCTGTCAAGGCTGCCCCAGCATACCCCCACATCCCG GATTGTCCTGTGGGGCTTCCGGTGGCTGATCTTCAGGATCATGCTTGGAGCAGCCCAGGTGACCAAGCTCGGCGAAGAGGTGAGCCTGCG CTTCCTGAAGAGGGAGGCCAAGCTGTGCGGCTTCCTGCAGAAGAGCTTCCTGGCCCTGGAGAAGAGAATGAAGGCCTCGGAGAGCTCACG GCTGAAGCTGGAGGGCAGCCTGCGGGGCGAGCTGGAGAGCCGGTGGGAGAAGCTTCGGGGGCTGATGGAGGAGCGCCTGCGGGCCCTGCA GGGGCAGCATGAGGTGGGGCCGGGCGGGCGGCGGGCAGAGGAGAGCCACCTCCTGGAGCAGTGCCAGGGCCTGGATGCTGCCGTGGCCCA GCTGACCAAGTTTGTGCAGCAGAACCAGGCGTCGCTGAACCGTGTCCTACTGGCCGAGGAGAAAGCCTGGGACGCCAAGGGGCGCTTGGA GGAAAGCCGGGCTGGGGAGCTGGCCGCCTATGTGCAGGAGAACCTGGAGGCCGCACAGCTGGCTGGCGAGCTGGCCCGGCAGGAGATGCA TGGAGAGCTGGTGCTGCTCCGAGAGAAGAGCCGGGCTCTGGAGGCATCCGTGGCGCAGCTGGCCGGGCAGTTAAAGGAGCTGAGTGGCCA TCTCCCGGCTCTGAGCAGCCGGCTCGATCTGCAGGAGCAGATGCTGGGCCTCAGGCTGTCCGAGGCAAAGACCGAATGGGAAGGTGCAGA GAGGAAGTCCCTGGAGGACCTGGCCAGGTGGCGGAAGGAGGTGACCGAACACCTGCGAGGGGTGCGGGAGAAGGTGGATGGCCTCCCCCA GCAGATAGAGAGTGTCTCCGACAAGTGCCTGCTTCATAAGAGCGACTCAGACCTCAGGATTTCCGCCGAAGGCAAGGCCAGGGAGTTCAA GGTTGGGGCCCTGCGGCAGGAGCTGGCCACGCTACTATCATCCGTGCAGCTGCTAAAGGAAGACAACCCTGGGCGGAAGATCGCGGAGAT GCAGGGCAAGCTGGCCACGAACCAAATAATGAAGCTGGAAAACTGCGTCCAGGCCAACAAGACCATCCAGAACCTCAGGTTCAACACTGA GGCCCGGCTGCGCACGCAGGAGATGGCCACCCTGTGGGAGAGTGTGCTCCGGCTGTGGAGTGAGGAGGGCCCGCGGACGCCGCTGGGCAG CTGGAAGGCGCTCCCATCCCTGGTGAGGCCGCGGGTCTTCATCAAGGACATGGCGCCTGGCAAGGTGGTGCCCATGAACTGCTGGGGCGT GTACCAGGCTGTGAGGTGGCTGCGCTGGAAGGCGTCCCTCATAAAGCTCAGGGCCCTGCGGAGGCCAGGAGGGGTCCTGGAGAAGCCCCA >In-frame_ENST00000262301_ENST00000389176_TCGA-DU-A6S2-01A_LMF1_chr16_960931_-_CCDC154_chr16_1489127_length(amino acids)=670AA_start in transcript=19_stop in transcript=2031 MRPDSPTMAAPAESLRRRKTGYSDPEPESPPAPGRGPAGSPAHLHTGTFWLTRIVLLKALAFVYFVAFLVAFHQNKQLIGDRGLLPCRVF LKNFQQYFQDRTSWEVFSYMPTILWLMDWSDMNSNLDLLALLGLGISSFVLITGCANMLLMAALWGLYMSLVNVGHVWYSFGWESQLLET GFLGIFLCPLWTLSRLPQHTPTSRIVLWGFRWLIFRIMLGAAQVTKLGEEVSLRFLKREAKLCGFLQKSFLALEKRMKASESSRLKLEGS LRGELESRWEKLRGLMEERLRALQGQHEVGPGGRRAEESHLLEQCQGLDAAVAQLTKFVQQNQASLNRVLLAEEKAWDAKGRLEESRAGE LAAYVQENLEAAQLAGELARQEMHGELVLLREKSRALEASVAQLAGQLKELSGHLPALSSRLDLQEQMLGLRLSEAKTEWEGAERKSLED LARWRKEVTEHLRGVREKVDGLPQQIESVSDKCLLHKSDSDLRISAEGKAREFKVGALRQELATLLSSVQLLKEDNPGRKIAEMQGKLAT NQIMKLENCVQANKTIQNLRFNTEARLRTQEMATLWESVLRLWSEEGPRTPLGSWKALPSLVRPRVFIKDMAPGKVVPMNCWGVYQAVRW -------------------------------------------------------------- >In-frame_ENST00000399843_ENST00000409671_TCGA-DU-A6S2-01A_LMF1_chr16_960931_-_CCDC154_chr16_1489127_length(transcript)=2017nt_BP=665nt ACATGCGCCCTGACAGCCCAACAATGGCGGCGCCCGCGGAGTCGCTGAGGAGGCGGAAGACTGGGTACTCGGATCCGGAGCCTGAGTCGC CGCCCGCGCCGGGGCGTGGCCCCGCAGGCTCTCCGGCCCATCTCCACACGGGCACCTTCTGGCTGACCCGGATCGTGCTCCTGAAGGCCC TAGCCTTCGTGTACTTCGTGGCATTCCTGGTGGCTTTCCATCAGAACAAGCAGCTCATCGGTGACAGGGGGCTGCTTCCCTGCAGAGTGT TCCTGAAGAACTTCCAGCAGTACTTCCAGGACAGGACGAGCTGGGAAGTCTTCAGCTACATGCCCACCATCCTCTGGCTGATGGACTGGT CAGACATGAACTCCAACCTGGACTTGCTGGCTCTTCTCGGACTGGGCATCTCGTCTTTCGTACTGATCACGGGCTGCGCCAACATGCTTC TCATGGCTGCCCTGTGGGGCCTCTACATGTCCCTGGTTAATGTGGGCCATGTCTGGTATTCCTTCAGATGGGAGTCCCAGCTTCTGGAGA CGGGGTTCCTGGGGATCTTCCTGTGCCCTCTGTGGACGCTGTCAAGGCTGCCCCAGCATACCCCCACATCCCGGATTGTCCTGTGGGGCT TCCGGTGGCTGATCTTCAGGATCATGCTTGGAGCAGCCCAGGTGACCAAGCTCGGCGAAGAGGTGAGCCTGCGCTTCCTGAAGAGGGAGG CCAAGCTGTGCGGCTTCCTGCAGAAGAGCTTCCTGGCCCTGGAGAAGAGAATGAAGGCCTCGGAGAGCTCACGGCTGAAGCTGGAGGGCA GCCTGCGGGGCGAGCTGGAGAGCCGGTGGGAGAAGCTTCGGGGGCTGATGGAGGAGCGCCTGCGGGCCCTGCAGGGGCAGCATGAGGAGA GCCACCTCCTGGAGCAGTGCCAGGGCCTGGATGCTGCCGTGGCCCAGCTGACCAAGTTTGTGCAGCAGAACCAGGCGTCGCTGAACCGTG TCCTACTGGCCGAGGAGAAAGCCTGGGACGCCAAGGGGCGCTTGGAGGAAAGCCGGGCTGGGGAGCTGGCCGCCTATGTGCAGGAGAACC TGGAGGCCGCACAGCTGGCTGGCGAGCTGGCCCGGCAGGAGATGCATGGAGAGCTGGTGCTGCTCCGAGAGAAGAGCCGGGCTCTGGAGG CATCCGTGGCGCAGCTGGCCGGGCAGTTAAAGGAGCTGAGTGGCCATCTCCCGGCTCTGAGCAGCCGGCTCGATCTGCAGGAGCAGATGC TGGGCCTCAGGCTGTCCGAGGCAAAGACCGAATGGGAAGGTGCAGAGAGGAAGTCCCTGGAGGACCTGGCCAGGTGGCGGAAGGAGGTGA CCGAACACCTGCGAGGGGTGCGGGAGAAGGTGGATGGCCTCCCCCAGCAGATAGAGAGTGTCTCCGACAAGTGCCTGCTTCATAAGAGCG ACTCAGACCTCAGGATTTCCGCCGAAGGCAAGGCCAGGGAGTTCAAGGTTGGGGCCCTGCGGCAGGAGCTGGCCACGCTACTATCATCCG TGCAGCTGCTAAAGGAAGACAACCCTGGGCGGAAGATCGCGGAGATGCAGGGCAAGCTGGCCACGTTTCAGAACCAAATAATGAAGCTGG AAAACTGCGTCCAGGCCAACAAGACCATCCAGAACCTCAGGTTCAACACTGAGGCCCGGCTGCGCACGCAGGAGATGGCCACCCTGTGGG AGAGTGTGCTCCGGCTGTGGAGTGAGGAGGGCCCGCGGACGCCGCTGGGCAGCTGGAAGGCGCTCCCATCCCTGGTGAGGCCGCGGGTCT TCATCAAGGACATGGCGCCTGGCAAGGTGGTGCCCATGAACTGCTGGGGCGTGTACCAGGCTGTGAGGTGGCTGCGCTGGAAGGCGTCCC TCATAAAGCTCAGGGCCCTGCGGAGGCCAGGAGGGGTCCTGGAGAAGCCCCACAGCCAGGAGCAGGTGCAGCAGCTCACACCCTCACTGT >In-frame_ENST00000399843_ENST00000409671_TCGA-DU-A6S2-01A_LMF1_chr16_960931_-_CCDC154_chr16_1489127_length(amino acids)=663AA_start in transcript=2_stop in transcript=1993 MRPDSPTMAAPAESLRRRKTGYSDPEPESPPAPGRGPAGSPAHLHTGTFWLTRIVLLKALAFVYFVAFLVAFHQNKQLIGDRGLLPCRVF LKNFQQYFQDRTSWEVFSYMPTILWLMDWSDMNSNLDLLALLGLGISSFVLITGCANMLLMAALWGLYMSLVNVGHVWYSFRWESQLLET GFLGIFLCPLWTLSRLPQHTPTSRIVLWGFRWLIFRIMLGAAQVTKLGEEVSLRFLKREAKLCGFLQKSFLALEKRMKASESSRLKLEGS LRGELESRWEKLRGLMEERLRALQGQHEESHLLEQCQGLDAAVAQLTKFVQQNQASLNRVLLAEEKAWDAKGRLEESRAGELAAYVQENL EAAQLAGELARQEMHGELVLLREKSRALEASVAQLAGQLKELSGHLPALSSRLDLQEQMLGLRLSEAKTEWEGAERKSLEDLARWRKEVT EHLRGVREKVDGLPQQIESVSDKCLLHKSDSDLRISAEGKAREFKVGALRQELATLLSSVQLLKEDNPGRKIAEMQGKLATFQNQIMKLE NCVQANKTIQNLRFNTEARLRTQEMATLWESVLRLWSEEGPRTPLGSWKALPSLVRPRVFIKDMAPGKVVPMNCWGVYQAVRWLRWKASL -------------------------------------------------------------- >In-frame_ENST00000399843_ENST00000389176_TCGA-DU-A6S2-01A_LMF1_chr16_960931_-_CCDC154_chr16_1489127_length(transcript)=2035nt_BP=665nt ACATGCGCCCTGACAGCCCAACAATGGCGGCGCCCGCGGAGTCGCTGAGGAGGCGGAAGACTGGGTACTCGGATCCGGAGCCTGAGTCGC CGCCCGCGCCGGGGCGTGGCCCCGCAGGCTCTCCGGCCCATCTCCACACGGGCACCTTCTGGCTGACCCGGATCGTGCTCCTGAAGGCCC TAGCCTTCGTGTACTTCGTGGCATTCCTGGTGGCTTTCCATCAGAACAAGCAGCTCATCGGTGACAGGGGGCTGCTTCCCTGCAGAGTGT TCCTGAAGAACTTCCAGCAGTACTTCCAGGACAGGACGAGCTGGGAAGTCTTCAGCTACATGCCCACCATCCTCTGGCTGATGGACTGGT CAGACATGAACTCCAACCTGGACTTGCTGGCTCTTCTCGGACTGGGCATCTCGTCTTTCGTACTGATCACGGGCTGCGCCAACATGCTTC TCATGGCTGCCCTGTGGGGCCTCTACATGTCCCTGGTTAATGTGGGCCATGTCTGGTATTCCTTCAGATGGGAGTCCCAGCTTCTGGAGA CGGGGTTCCTGGGGATCTTCCTGTGCCCTCTGTGGACGCTGTCAAGGCTGCCCCAGCATACCCCCACATCCCGGATTGTCCTGTGGGGCT TCCGGTGGCTGATCTTCAGGATCATGCTTGGAGCAGCCCAGGTGACCAAGCTCGGCGAAGAGGTGAGCCTGCGCTTCCTGAAGAGGGAGG CCAAGCTGTGCGGCTTCCTGCAGAAGAGCTTCCTGGCCCTGGAGAAGAGAATGAAGGCCTCGGAGAGCTCACGGCTGAAGCTGGAGGGCA GCCTGCGGGGCGAGCTGGAGAGCCGGTGGGAGAAGCTTCGGGGGCTGATGGAGGAGCGCCTGCGGGCCCTGCAGGGGCAGCATGAGGTGG GGCCGGGCGGGCGGCGGGCAGAGGAGAGCCACCTCCTGGAGCAGTGCCAGGGCCTGGATGCTGCCGTGGCCCAGCTGACCAAGTTTGTGC AGCAGAACCAGGCGTCGCTGAACCGTGTCCTACTGGCCGAGGAGAAAGCCTGGGACGCCAAGGGGCGCTTGGAGGAAAGCCGGGCTGGGG AGCTGGCCGCCTATGTGCAGGAGAACCTGGAGGCCGCACAGCTGGCTGGCGAGCTGGCCCGGCAGGAGATGCATGGAGAGCTGGTGCTGC TCCGAGAGAAGAGCCGGGCTCTGGAGGCATCCGTGGCGCAGCTGGCCGGGCAGTTAAAGGAGCTGAGTGGCCATCTCCCGGCTCTGAGCA GCCGGCTCGATCTGCAGGAGCAGATGCTGGGCCTCAGGCTGTCCGAGGCAAAGACCGAATGGGAAGGTGCAGAGAGGAAGTCCCTGGAGG ACCTGGCCAGGTGGCGGAAGGAGGTGACCGAACACCTGCGAGGGGTGCGGGAGAAGGTGGATGGCCTCCCCCAGCAGATAGAGAGTGTCT CCGACAAGTGCCTGCTTCATAAGAGCGACTCAGACCTCAGGATTTCCGCCGAAGGCAAGGCCAGGGAGTTCAAGGTTGGGGCCCTGCGGC AGGAGCTGGCCACGCTACTATCATCCGTGCAGCTGCTAAAGGAAGACAACCCTGGGCGGAAGATCGCGGAGATGCAGGGCAAGCTGGCCA CGAACCAAATAATGAAGCTGGAAAACTGCGTCCAGGCCAACAAGACCATCCAGAACCTCAGGTTCAACACTGAGGCCCGGCTGCGCACGC AGGAGATGGCCACCCTGTGGGAGAGTGTGCTCCGGCTGTGGAGTGAGGAGGGCCCGCGGACGCCGCTGGGCAGCTGGAAGGCGCTCCCAT CCCTGGTGAGGCCGCGGGTCTTCATCAAGGACATGGCGCCTGGCAAGGTGGTGCCCATGAACTGCTGGGGCGTGTACCAGGCTGTGAGGT GGCTGCGCTGGAAGGCGTCCCTCATAAAGCTCAGGGCCCTGCGGAGGCCAGGAGGGGTCCTGGAGAAGCCCCACAGCCAGGAGCAGGTGC >In-frame_ENST00000399843_ENST00000389176_TCGA-DU-A6S2-01A_LMF1_chr16_960931_-_CCDC154_chr16_1489127_length(amino acids)=670AA_start in transcript=2_stop in transcript=2014 MRPDSPTMAAPAESLRRRKTGYSDPEPESPPAPGRGPAGSPAHLHTGTFWLTRIVLLKALAFVYFVAFLVAFHQNKQLIGDRGLLPCRVF LKNFQQYFQDRTSWEVFSYMPTILWLMDWSDMNSNLDLLALLGLGISSFVLITGCANMLLMAALWGLYMSLVNVGHVWYSFRWESQLLET GFLGIFLCPLWTLSRLPQHTPTSRIVLWGFRWLIFRIMLGAAQVTKLGEEVSLRFLKREAKLCGFLQKSFLALEKRMKASESSRLKLEGS LRGELESRWEKLRGLMEERLRALQGQHEVGPGGRRAEESHLLEQCQGLDAAVAQLTKFVQQNQASLNRVLLAEEKAWDAKGRLEESRAGE LAAYVQENLEAAQLAGELARQEMHGELVLLREKSRALEASVAQLAGQLKELSGHLPALSSRLDLQEQMLGLRLSEAKTEWEGAERKSLED LARWRKEVTEHLRGVREKVDGLPQQIESVSDKCLLHKSDSDLRISAEGKAREFKVGALRQELATLLSSVQLLKEDNPGRKIAEMQGKLAT NQIMKLENCVQANKTIQNLRFNTEARLRTQEMATLWESVLRLWSEEGPRTPLGSWKALPSLVRPRVFIKDMAPGKVVPMNCWGVYQAVRW -------------------------------------------------------------- >In-frame_ENST00000568897_ENST00000409671_TCGA-DU-A6S2-01A_LMF1_chr16_960931_-_CCDC154_chr16_1489127_length(transcript)=1894nt_BP=542nt GGCTCTCCGGCCCATCTCCACACGGGCACCTTCTGGCTGACCCGGATCGTGCTCCTGAAGGCCCTAGCCTTCGTGTACTTCGTGGCATTC CTGGTGGCTTTCCATCAGAACAAGCAGCTCATCGGTGACAGGGGGCTGCTTCCCTGCAGAGTGTTCCTGAAGAACTTCCAGCAGTACTTC CAGGACAGGACGAGCTGGGAAGTCTTCAGCTACATGCCCACCATCCTCTGGCTGATGGACTGGTCAGACATGAACTCCAACCTGGACTTG CTGGCTCTTCTCGGACTGGGCATCTCGTCTTTCGTACTGATCACGGGCTGCGCCAACATGCTTCTCATGGCTGCCCTGTGGGGCCTCTAC ATGTCCCTGGTTAATGTGGGCCATGTCTGGTGAGATGGGAGTCCCAGCTTCTGGAGACGGGGTTCCTGGGGATCTTCCTGTGCCCTCTGT GGACGCTGTCAAGGCTGCCCCAGCATACCCCCACATCCCGGATTGTCCTGTGGGGCTTCCGGTGGCTGATCTTCAGGATCATGCTTGGAG CAGCCCAGGTGACCAAGCTCGGCGAAGAGGTGAGCCTGCGCTTCCTGAAGAGGGAGGCCAAGCTGTGCGGCTTCCTGCAGAAGAGCTTCC TGGCCCTGGAGAAGAGAATGAAGGCCTCGGAGAGCTCACGGCTGAAGCTGGAGGGCAGCCTGCGGGGCGAGCTGGAGAGCCGGTGGGAGA AGCTTCGGGGGCTGATGGAGGAGCGCCTGCGGGCCCTGCAGGGGCAGCATGAGGAGAGCCACCTCCTGGAGCAGTGCCAGGGCCTGGATG CTGCCGTGGCCCAGCTGACCAAGTTTGTGCAGCAGAACCAGGCGTCGCTGAACCGTGTCCTACTGGCCGAGGAGAAAGCCTGGGACGCCA AGGGGCGCTTGGAGGAAAGCCGGGCTGGGGAGCTGGCCGCCTATGTGCAGGAGAACCTGGAGGCCGCACAGCTGGCTGGCGAGCTGGCCC GGCAGGAGATGCATGGAGAGCTGGTGCTGCTCCGAGAGAAGAGCCGGGCTCTGGAGGCATCCGTGGCGCAGCTGGCCGGGCAGTTAAAGG AGCTGAGTGGCCATCTCCCGGCTCTGAGCAGCCGGCTCGATCTGCAGGAGCAGATGCTGGGCCTCAGGCTGTCCGAGGCAAAGACCGAAT GGGAAGGTGCAGAGAGGAAGTCCCTGGAGGACCTGGCCAGGTGGCGGAAGGAGGTGACCGAACACCTGCGAGGGGTGCGGGAGAAGGTGG ATGGCCTCCCCCAGCAGATAGAGAGTGTCTCCGACAAGTGCCTGCTTCATAAGAGCGACTCAGACCTCAGGATTTCCGCCGAAGGCAAGG CCAGGGAGTTCAAGGTTGGGGCCCTGCGGCAGGAGCTGGCCACGCTACTATCATCCGTGCAGCTGCTAAAGGAAGACAACCCTGGGCGGA AGATCGCGGAGATGCAGGGCAAGCTGGCCACGTTTCAGAACCAAATAATGAAGCTGGAAAACTGCGTCCAGGCCAACAAGACCATCCAGA ACCTCAGGTTCAACACTGAGGCCCGGCTGCGCACGCAGGAGATGGCCACCCTGTGGGAGAGTGTGCTCCGGCTGTGGAGTGAGGAGGGCC CGCGGACGCCGCTGGGCAGCTGGAAGGCGCTCCCATCCCTGGTGAGGCCGCGGGTCTTCATCAAGGACATGGCGCCTGGCAAGGTGGTGC CCATGAACTGCTGGGGCGTGTACCAGGCTGTGAGGTGGCTGCGCTGGAAGGCGTCCCTCATAAAGCTCAGGGCCCTGCGGAGGCCAGGAG GGGTCCTGGAGAAGCCCCACAGCCAGGAGCAGGTGCAGCAGCTCACACCCTCACTGTTTATCCAGAAATAAACGTGCTGGCTTTGTACTC >In-frame_ENST00000568897_ENST00000409671_TCGA-DU-A6S2-01A_LMF1_chr16_960931_-_CCDC154_chr16_1489127_length(amino acids)=494AA_start in transcript=386_stop in transcript=1870 MVRWESQLLETGFLGIFLCPLWTLSRLPQHTPTSRIVLWGFRWLIFRIMLGAAQVTKLGEEVSLRFLKREAKLCGFLQKSFLALEKRMKA SESSRLKLEGSLRGELESRWEKLRGLMEERLRALQGQHEESHLLEQCQGLDAAVAQLTKFVQQNQASLNRVLLAEEKAWDAKGRLEESRA GELAAYVQENLEAAQLAGELARQEMHGELVLLREKSRALEASVAQLAGQLKELSGHLPALSSRLDLQEQMLGLRLSEAKTEWEGAERKSL EDLARWRKEVTEHLRGVREKVDGLPQQIESVSDKCLLHKSDSDLRISAEGKAREFKVGALRQELATLLSSVQLLKEDNPGRKIAEMQGKL ATFQNQIMKLENCVQANKTIQNLRFNTEARLRTQEMATLWESVLRLWSEEGPRTPLGSWKALPSLVRPRVFIKDMAPGKVVPMNCWGVYQ -------------------------------------------------------------- >In-frame_ENST00000568897_ENST00000389176_TCGA-DU-A6S2-01A_LMF1_chr16_960931_-_CCDC154_chr16_1489127_length(transcript)=1912nt_BP=542nt GGCTCTCCGGCCCATCTCCACACGGGCACCTTCTGGCTGACCCGGATCGTGCTCCTGAAGGCCCTAGCCTTCGTGTACTTCGTGGCATTC CTGGTGGCTTTCCATCAGAACAAGCAGCTCATCGGTGACAGGGGGCTGCTTCCCTGCAGAGTGTTCCTGAAGAACTTCCAGCAGTACTTC CAGGACAGGACGAGCTGGGAAGTCTTCAGCTACATGCCCACCATCCTCTGGCTGATGGACTGGTCAGACATGAACTCCAACCTGGACTTG CTGGCTCTTCTCGGACTGGGCATCTCGTCTTTCGTACTGATCACGGGCTGCGCCAACATGCTTCTCATGGCTGCCCTGTGGGGCCTCTAC ATGTCCCTGGTTAATGTGGGCCATGTCTGGTGAGATGGGAGTCCCAGCTTCTGGAGACGGGGTTCCTGGGGATCTTCCTGTGCCCTCTGT GGACGCTGTCAAGGCTGCCCCAGCATACCCCCACATCCCGGATTGTCCTGTGGGGCTTCCGGTGGCTGATCTTCAGGATCATGCTTGGAG CAGCCCAGGTGACCAAGCTCGGCGAAGAGGTGAGCCTGCGCTTCCTGAAGAGGGAGGCCAAGCTGTGCGGCTTCCTGCAGAAGAGCTTCC TGGCCCTGGAGAAGAGAATGAAGGCCTCGGAGAGCTCACGGCTGAAGCTGGAGGGCAGCCTGCGGGGCGAGCTGGAGAGCCGGTGGGAGA AGCTTCGGGGGCTGATGGAGGAGCGCCTGCGGGCCCTGCAGGGGCAGCATGAGGTGGGGCCGGGCGGGCGGCGGGCAGAGGAGAGCCACC TCCTGGAGCAGTGCCAGGGCCTGGATGCTGCCGTGGCCCAGCTGACCAAGTTTGTGCAGCAGAACCAGGCGTCGCTGAACCGTGTCCTAC TGGCCGAGGAGAAAGCCTGGGACGCCAAGGGGCGCTTGGAGGAAAGCCGGGCTGGGGAGCTGGCCGCCTATGTGCAGGAGAACCTGGAGG CCGCACAGCTGGCTGGCGAGCTGGCCCGGCAGGAGATGCATGGAGAGCTGGTGCTGCTCCGAGAGAAGAGCCGGGCTCTGGAGGCATCCG TGGCGCAGCTGGCCGGGCAGTTAAAGGAGCTGAGTGGCCATCTCCCGGCTCTGAGCAGCCGGCTCGATCTGCAGGAGCAGATGCTGGGCC TCAGGCTGTCCGAGGCAAAGACCGAATGGGAAGGTGCAGAGAGGAAGTCCCTGGAGGACCTGGCCAGGTGGCGGAAGGAGGTGACCGAAC ACCTGCGAGGGGTGCGGGAGAAGGTGGATGGCCTCCCCCAGCAGATAGAGAGTGTCTCCGACAAGTGCCTGCTTCATAAGAGCGACTCAG ACCTCAGGATTTCCGCCGAAGGCAAGGCCAGGGAGTTCAAGGTTGGGGCCCTGCGGCAGGAGCTGGCCACGCTACTATCATCCGTGCAGC TGCTAAAGGAAGACAACCCTGGGCGGAAGATCGCGGAGATGCAGGGCAAGCTGGCCACGAACCAAATAATGAAGCTGGAAAACTGCGTCC AGGCCAACAAGACCATCCAGAACCTCAGGTTCAACACTGAGGCCCGGCTGCGCACGCAGGAGATGGCCACCCTGTGGGAGAGTGTGCTCC GGCTGTGGAGTGAGGAGGGCCCGCGGACGCCGCTGGGCAGCTGGAAGGCGCTCCCATCCCTGGTGAGGCCGCGGGTCTTCATCAAGGACA TGGCGCCTGGCAAGGTGGTGCCCATGAACTGCTGGGGCGTGTACCAGGCTGTGAGGTGGCTGCGCTGGAAGGCGTCCCTCATAAAGCTCA GGGCCCTGCGGAGGCCAGGAGGGGTCCTGGAGAAGCCCCACAGCCAGGAGCAGGTGCAGCAGCTCACACCCTCACTGTTTATCCAGAAAT >In-frame_ENST00000568897_ENST00000389176_TCGA-DU-A6S2-01A_LMF1_chr16_960931_-_CCDC154_chr16_1489127_length(amino acids)=501AA_start in transcript=386_stop in transcript=1891 MVRWESQLLETGFLGIFLCPLWTLSRLPQHTPTSRIVLWGFRWLIFRIMLGAAQVTKLGEEVSLRFLKREAKLCGFLQKSFLALEKRMKA SESSRLKLEGSLRGELESRWEKLRGLMEERLRALQGQHEVGPGGRRAEESHLLEQCQGLDAAVAQLTKFVQQNQASLNRVLLAEEKAWDA KGRLEESRAGELAAYVQENLEAAQLAGELARQEMHGELVLLREKSRALEASVAQLAGQLKELSGHLPALSSRLDLQEQMLGLRLSEAKTE WEGAERKSLEDLARWRKEVTEHLRGVREKVDGLPQQIESVSDKCLLHKSDSDLRISAEGKAREFKVGALRQELATLLSSVQLLKEDNPGR KIAEMQGKLATNQIMKLENCVQANKTIQNLRFNTEARLRTQEMATLWESVLRLWSEEGPRTPLGSWKALPSLVRPRVFIKDMAPGKVVPM -------------------------------------------------------------- |
Top |
Fusion Gene PPI Analysis for LMF1-CCDC154 |
Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in |
Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
Hgene | Hgene's interactors | Tgene | Tgene's interactors |
- Retained PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
- Lost PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
- Retained PPIs, but lost function due to frame-shift fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
Top |
Related Drugs for LMF1-CCDC154 |
Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.8 2021-05-08) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
Top |
Related Diseases for LMF1-CCDC154 |
Diseases associated with fusion partners. (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Hgene | LMF1 | C1855498 | Lipase deficiency combined | 3 | CTD_human;GENOMICS_ENGLAND;ORPHANET |
Hgene | LMF1 | C0020557 | Hypertriglyceridemia | 1 | CTD_human |