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 | Fusion Gene Summary |
| Fusion Gene ORF analysis |
| Fusion Genomic Features |
| Fusion Protein Features |
| Fusion Gene Sequence |
| Fusion Gene PPI analysis |
| Related Drugs |
| Related Diseases |
Fusion gene:LRRC16A-SLC17A1 (FusionGDB2 ID:49636) |
Fusion Gene Summary for LRRC16A-SLC17A1 |
 Fusion gene summary |
| Fusion gene information | Fusion gene name: LRRC16A-SLC17A1 | Fusion gene ID: 49636 | Hgene | Tgene | Gene symbol | LRRC16A | SLC17A1 | Gene ID | 55604 | 6568 |
| Gene name | capping protein regulator and myosin 1 linker 1 | solute carrier family 17 member 1 | |
| Synonyms | CARMIL|CARMIL1a|LRRC16|LRRC16A|dJ501N12.1|dJ501N12.5 | NAPI-1|NPT-1|NPT1 | |
| Cytomap | 6p22.2 | 6p22.2 | |
| Type of gene | protein-coding | protein-coding | |
| Description | F-actin-uncapping protein LRRC16ACARMIL homologcapping protein regulator and myosin 1 linker protein 1capping protein, Arp2/3 and myosin-I linker homolog 1capping protein, Arp2/3 and myosin-I linker protein 1capping protein, Arp2/3, and Myosin-I Link | sodium-dependent phosphate transport protein 1Na(+)/PI cotransporter 1na/Pi-4renal Na(+)-dependent phosphate cotransporter 1renal sodium-dependent phosphate transport protein 1renal sodium-phosphate transport protein 1sodium phosphate transporterso | |
| Modification date | 20200313 | 20200313 | |
| UniProtAcc | . | . | |
| Ensembl transtripts involved in fusion gene | ENST00000329474, ENST00000377969, ENST00000476458, | ENST00000244527, ENST00000427328, ENST00000476801, ENST00000468082, | |
| Fusion gene scores | * DoF score | 7 X 5 X 7=245 | 1 X 1 X 1=1 |
| # samples | 8 | 1 | |
| ** MAII score | log2(8/245*10)=-1.61470984411521 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(1/1*10)=3.32192809488736 | |
| Context | PubMed: LRRC16A [Title/Abstract] AND SLC17A1 [Title/Abstract] AND fusion [Title/Abstract] | ||
| Most frequent breakpoint | LRRC16A(25285137)-SLC17A1(25820143), # samples:2 | ||
| Anticipated loss of major functional domain due to fusion event. | |||
| * DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
| Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Partner | Gene | GO ID | GO term | PubMed ID |
| Hgene | LRRC16A | GO:0030335 | positive regulation of cell migration | 19846667 |
| Hgene | LRRC16A | GO:0044351 | macropinocytosis | 19846667 |
| Hgene | LRRC16A | GO:0051639 | actin filament network formation | 19846667 |
| Hgene | LRRC16A | GO:1902745 | positive regulation of lamellipodium organization | 16054028 |
| Fusion gene breakpoints across LRRC16A (5'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
| Fusion gene breakpoints across SLC17A1 (3'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
| Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| Source | Disease | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| ChimerDB4 | LUAD | TCGA-49-4487-01A | LRRC16A | chr6 | 25285137 | + | SLC17A1 | chr6 | 25820143 | - |
| ChimerDB4 | LUAD | TCGA-49-4487-01A | LRRC16A | chr6 | 25285137 | - | SLC17A1 | chr6 | 25820143 | - |
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Fusion Gene ORF analysis for LRRC16A-SLC17A1 |
| Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| In-frame | ENST00000329474 | ENST00000244527 | LRRC16A | chr6 | 25285137 | + | SLC17A1 | chr6 | 25820143 | - |
| In-frame | ENST00000329474 | ENST00000427328 | LRRC16A | chr6 | 25285137 | + | SLC17A1 | chr6 | 25820143 | - |
| In-frame | ENST00000329474 | ENST00000476801 | LRRC16A | chr6 | 25285137 | + | SLC17A1 | chr6 | 25820143 | - |
| In-frame | ENST00000329474 | ENST00000468082 | LRRC16A | chr6 | 25285137 | + | SLC17A1 | chr6 | 25820143 | - |
| 5UTR-3CDS | ENST00000377969 | ENST00000244527 | LRRC16A | chr6 | 25285137 | + | SLC17A1 | chr6 | 25820143 | - |
| 5UTR-3CDS | ENST00000377969 | ENST00000427328 | LRRC16A | chr6 | 25285137 | + | SLC17A1 | chr6 | 25820143 | - |
| 5UTR-3CDS | ENST00000377969 | ENST00000476801 | LRRC16A | chr6 | 25285137 | + | SLC17A1 | chr6 | 25820143 | - |
| 5UTR-3CDS | ENST00000377969 | ENST00000468082 | LRRC16A | chr6 | 25285137 | + | SLC17A1 | chr6 | 25820143 | - |
| intron-3CDS | ENST00000476458 | ENST00000244527 | LRRC16A | chr6 | 25285137 | + | SLC17A1 | chr6 | 25820143 | - |
| intron-3CDS | ENST00000476458 | ENST00000427328 | LRRC16A | chr6 | 25285137 | + | SLC17A1 | chr6 | 25820143 | - |
| intron-3CDS | ENST00000476458 | ENST00000476801 | LRRC16A | chr6 | 25285137 | + | SLC17A1 | chr6 | 25820143 | - |
| intron-3CDS | ENST00000476458 | ENST00000468082 | LRRC16A | chr6 | 25285137 | + | SLC17A1 | chr6 | 25820143 | - |
| ORFfinder result based on the fusion transcript sequence of in-frame fusion genes. |
| Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | Seq length (transcript) | BP loci (transcript) | Predicted start (transcript) | Predicted stop (transcript) | Seq length (amino acids) |
| ENST00000329474 | LRRC16A | chr6 | 25285137 | + | ENST00000244527 | SLC17A1 | chr6 | 25820143 | - | 2027 | 506 | 368 | 1702 | 444 |
| ENST00000329474 | LRRC16A | chr6 | 25285137 | + | ENST00000427328 | SLC17A1 | chr6 | 25820143 | - | 1862 | 506 | 368 | 1540 | 390 |
| ENST00000329474 | LRRC16A | chr6 | 25285137 | + | ENST00000476801 | SLC17A1 | chr6 | 25820143 | - | 1905 | 506 | 368 | 1702 | 444 |
| ENST00000329474 | LRRC16A | chr6 | 25285137 | + | ENST00000468082 | SLC17A1 | chr6 | 25820143 | - | 1541 | 506 | 368 | 1540 | 391 |
| DeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated. |
| Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | No-coding score | Coding score |
| ENST00000329474 | ENST00000244527 | LRRC16A | chr6 | 25285137 | + | SLC17A1 | chr6 | 25820143 | - | 0.000673651 | 0.99932635 |
| ENST00000329474 | ENST00000427328 | LRRC16A | chr6 | 25285137 | + | SLC17A1 | chr6 | 25820143 | - | 0.001032472 | 0.9989675 |
| ENST00000329474 | ENST00000476801 | LRRC16A | chr6 | 25285137 | + | SLC17A1 | chr6 | 25820143 | - | 0.001066028 | 0.998934 |
| ENST00000329474 | ENST00000468082 | LRRC16A | chr6 | 25285137 | + | SLC17A1 | chr6 | 25820143 | - | 0.001510133 | 0.99848986 |
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Fusion Genomic Features for LRRC16A-SLC17A1 |
| FusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints. |
| Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | 1-p | p (fusion gene breakpoint) |
| Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page. |
| Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page. |
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Fusion Protein Features for LRRC16A-SLC17A1 |
| Go to FGviewer for the breakpoints of chr6:25285137-chr6:25820143 - FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels. |
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| Main function of each fusion partner protein. (from UniProt) |
| Hgene | Tgene |
| . | . |
| FUNCTION: Might normally function as a transcriptional repressor. EWS-fusion-proteins (EFPS) may play a role in the tumorigenic process. They may disturb gene expression by mimicking, or interfering with the normal function of CTD-POLII within the transcription initiation complex. They may also contribute to an aberrant activation of the fusion protein target genes. | FUNCTION: Might normally function as a transcriptional repressor. EWS-fusion-proteins (EFPS) may play a role in the tumorigenic process. They may disturb gene expression by mimicking, or interfering with the normal function of CTD-POLII within the transcription initiation complex. They may also contribute to an aberrant activation of the fusion protein target genes. |
| Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at * Minus value of BPloci means that the break pointn is located before the CDS. |
| - In-frame and retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| Tgene | SLC17A1 | chr6:25285137 | chr6:25820143 | ENST00000244527 | 2 | 13 | 119_139 | 69.0 | 571.0 | Transmembrane | Helical | |
| Tgene | SLC17A1 | chr6:25285137 | chr6:25820143 | ENST00000244527 | 2 | 13 | 178_198 | 69.0 | 571.0 | Transmembrane | Helical | |
| Tgene | SLC17A1 | chr6:25285137 | chr6:25820143 | ENST00000244527 | 2 | 13 | 200_220 | 69.0 | 571.0 | Transmembrane | Helical | |
| Tgene | SLC17A1 | chr6:25285137 | chr6:25820143 | ENST00000244527 | 2 | 13 | 257_277 | 69.0 | 571.0 | Transmembrane | Helical | |
| Tgene | SLC17A1 | chr6:25285137 | chr6:25820143 | ENST00000244527 | 2 | 13 | 301_321 | 69.0 | 571.0 | Transmembrane | Helical | |
| Tgene | SLC17A1 | chr6:25285137 | chr6:25820143 | ENST00000244527 | 2 | 13 | 339_359 | 69.0 | 571.0 | Transmembrane | Helical | |
| Tgene | SLC17A1 | chr6:25285137 | chr6:25820143 | ENST00000244527 | 2 | 13 | 365_385 | 69.0 | 571.0 | Transmembrane | Helical | |
| Tgene | SLC17A1 | chr6:25285137 | chr6:25820143 | ENST00000244527 | 2 | 13 | 401_421 | 69.0 | 571.0 | Transmembrane | Helical | |
| Tgene | SLC17A1 | chr6:25285137 | chr6:25820143 | ENST00000244527 | 2 | 13 | 433_453 | 69.0 | 571.0 | Transmembrane | Helical | |
| Tgene | SLC17A1 | chr6:25285137 | chr6:25820143 | ENST00000244527 | 2 | 13 | 81_101 | 69.0 | 571.0 | Transmembrane | Helical | |
| Tgene | SLC17A1 | chr6:25285137 | chr6:25820143 | ENST00000427328 | 2 | 12 | 119_139 | 69.0 | 516.0 | Transmembrane | Helical | |
| Tgene | SLC17A1 | chr6:25285137 | chr6:25820143 | ENST00000427328 | 2 | 12 | 178_198 | 69.0 | 516.0 | Transmembrane | Helical | |
| Tgene | SLC17A1 | chr6:25285137 | chr6:25820143 | ENST00000427328 | 2 | 12 | 200_220 | 69.0 | 516.0 | Transmembrane | Helical | |
| Tgene | SLC17A1 | chr6:25285137 | chr6:25820143 | ENST00000427328 | 2 | 12 | 257_277 | 69.0 | 516.0 | Transmembrane | Helical | |
| Tgene | SLC17A1 | chr6:25285137 | chr6:25820143 | ENST00000427328 | 2 | 12 | 301_321 | 69.0 | 516.0 | Transmembrane | Helical | |
| Tgene | SLC17A1 | chr6:25285137 | chr6:25820143 | ENST00000427328 | 2 | 12 | 339_359 | 69.0 | 516.0 | Transmembrane | Helical | |
| Tgene | SLC17A1 | chr6:25285137 | chr6:25820143 | ENST00000427328 | 2 | 12 | 365_385 | 69.0 | 516.0 | Transmembrane | Helical | |
| Tgene | SLC17A1 | chr6:25285137 | chr6:25820143 | ENST00000427328 | 2 | 12 | 401_421 | 69.0 | 516.0 | Transmembrane | Helical | |
| Tgene | SLC17A1 | chr6:25285137 | chr6:25820143 | ENST00000427328 | 2 | 12 | 433_453 | 69.0 | 516.0 | Transmembrane | Helical | |
| Tgene | SLC17A1 | chr6:25285137 | chr6:25820143 | ENST00000427328 | 2 | 12 | 81_101 | 69.0 | 516.0 | Transmembrane | Helical | |
| Tgene | SLC17A1 | chr6:25285137 | chr6:25820143 | ENST00000468082 | 1 | 10 | 119_139 | 69.0 | 414.0 | Transmembrane | Helical | |
| Tgene | SLC17A1 | chr6:25285137 | chr6:25820143 | ENST00000468082 | 1 | 10 | 178_198 | 69.0 | 414.0 | Transmembrane | Helical | |
| Tgene | SLC17A1 | chr6:25285137 | chr6:25820143 | ENST00000468082 | 1 | 10 | 200_220 | 69.0 | 414.0 | Transmembrane | Helical | |
| Tgene | SLC17A1 | chr6:25285137 | chr6:25820143 | ENST00000468082 | 1 | 10 | 257_277 | 69.0 | 414.0 | Transmembrane | Helical | |
| Tgene | SLC17A1 | chr6:25285137 | chr6:25820143 | ENST00000468082 | 1 | 10 | 301_321 | 69.0 | 414.0 | Transmembrane | Helical | |
| Tgene | SLC17A1 | chr6:25285137 | chr6:25820143 | ENST00000468082 | 1 | 10 | 339_359 | 69.0 | 414.0 | Transmembrane | Helical | |
| Tgene | SLC17A1 | chr6:25285137 | chr6:25820143 | ENST00000468082 | 1 | 10 | 365_385 | 69.0 | 414.0 | Transmembrane | Helical | |
| Tgene | SLC17A1 | chr6:25285137 | chr6:25820143 | ENST00000468082 | 1 | 10 | 401_421 | 69.0 | 414.0 | Transmembrane | Helical | |
| Tgene | SLC17A1 | chr6:25285137 | chr6:25820143 | ENST00000468082 | 1 | 10 | 433_453 | 69.0 | 414.0 | Transmembrane | Helical | |
| Tgene | SLC17A1 | chr6:25285137 | chr6:25820143 | ENST00000468082 | 1 | 10 | 81_101 | 69.0 | 414.0 | Transmembrane | Helical | |
| Tgene | SLC17A1 | chr6:25285137 | chr6:25820143 | ENST00000476801 | 2 | 12 | 119_139 | 69.0 | 468.0 | Transmembrane | Helical | |
| Tgene | SLC17A1 | chr6:25285137 | chr6:25820143 | ENST00000476801 | 2 | 12 | 178_198 | 69.0 | 468.0 | Transmembrane | Helical | |
| Tgene | SLC17A1 | chr6:25285137 | chr6:25820143 | ENST00000476801 | 2 | 12 | 200_220 | 69.0 | 468.0 | Transmembrane | Helical | |
| Tgene | SLC17A1 | chr6:25285137 | chr6:25820143 | ENST00000476801 | 2 | 12 | 257_277 | 69.0 | 468.0 | Transmembrane | Helical | |
| Tgene | SLC17A1 | chr6:25285137 | chr6:25820143 | ENST00000476801 | 2 | 12 | 301_321 | 69.0 | 468.0 | Transmembrane | Helical | |
| Tgene | SLC17A1 | chr6:25285137 | chr6:25820143 | ENST00000476801 | 2 | 12 | 339_359 | 69.0 | 468.0 | Transmembrane | Helical | |
| Tgene | SLC17A1 | chr6:25285137 | chr6:25820143 | ENST00000476801 | 2 | 12 | 365_385 | 69.0 | 468.0 | Transmembrane | Helical | |
| Tgene | SLC17A1 | chr6:25285137 | chr6:25820143 | ENST00000476801 | 2 | 12 | 401_421 | 69.0 | 468.0 | Transmembrane | Helical | |
| Tgene | SLC17A1 | chr6:25285137 | chr6:25820143 | ENST00000476801 | 2 | 12 | 433_453 | 69.0 | 468.0 | Transmembrane | Helical | |
| Tgene | SLC17A1 | chr6:25285137 | chr6:25820143 | ENST00000476801 | 2 | 12 | 81_101 | 69.0 | 468.0 | Transmembrane | Helical |
| - In-frame and not-retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| Hgene | LRRC16A | chr6:25285137 | chr6:25820143 | ENST00000329474 | + | 2 | 37 | 710_734 | 46.0 | 1372.0 | Coiled coil | Ontology_term=ECO:0000255 |
| Hgene | LRRC16A | chr6:25285137 | chr6:25820143 | ENST00000377969 | + | 2 | 12 | 710_734 | 0 | 177.0 | Coiled coil | Ontology_term=ECO:0000255 |
| Hgene | LRRC16A | chr6:25285137 | chr6:25820143 | ENST00000329474 | + | 2 | 37 | 1243_1250 | 46.0 | 1372.0 | Compositional bias | Note=Poly-Ser |
| Hgene | LRRC16A | chr6:25285137 | chr6:25820143 | ENST00000377969 | + | 2 | 12 | 1243_1250 | 0 | 177.0 | Compositional bias | Note=Poly-Ser |
| Hgene | LRRC16A | chr6:25285137 | chr6:25820143 | ENST00000329474 | + | 2 | 37 | 1055_1089 | 46.0 | 1372.0 | Region | Necessary for localization at the cell membrane |
| Hgene | LRRC16A | chr6:25285137 | chr6:25820143 | ENST00000329474 | + | 2 | 37 | 958_1082 | 46.0 | 1372.0 | Region | Inhibits capping activity of CAPZA2 |
| Hgene | LRRC16A | chr6:25285137 | chr6:25820143 | ENST00000377969 | + | 2 | 12 | 1055_1089 | 0 | 177.0 | Region | Necessary for localization at the cell membrane |
| Hgene | LRRC16A | chr6:25285137 | chr6:25820143 | ENST00000377969 | + | 2 | 12 | 958_1082 | 0 | 177.0 | Region | Inhibits capping activity of CAPZA2 |
| Hgene | LRRC16A | chr6:25285137 | chr6:25820143 | ENST00000329474 | + | 2 | 37 | 245_269 | 46.0 | 1372.0 | Repeat | Note=LRR 1 |
| Hgene | LRRC16A | chr6:25285137 | chr6:25820143 | ENST00000329474 | + | 2 | 37 | 275_298 | 46.0 | 1372.0 | Repeat | Note=LRR 2 |
| Hgene | LRRC16A | chr6:25285137 | chr6:25820143 | ENST00000329474 | + | 2 | 37 | 304_327 | 46.0 | 1372.0 | Repeat | Note=LRR 3 |
| Hgene | LRRC16A | chr6:25285137 | chr6:25820143 | ENST00000329474 | + | 2 | 37 | 336_363 | 46.0 | 1372.0 | Repeat | Note=LRR 4 |
| Hgene | LRRC16A | chr6:25285137 | chr6:25820143 | ENST00000329474 | + | 2 | 37 | 391_418 | 46.0 | 1372.0 | Repeat | Note=LRR 5 |
| Hgene | LRRC16A | chr6:25285137 | chr6:25820143 | ENST00000329474 | + | 2 | 37 | 423_447 | 46.0 | 1372.0 | Repeat | Note=LRR 6 |
| Hgene | LRRC16A | chr6:25285137 | chr6:25820143 | ENST00000329474 | + | 2 | 37 | 481_506 | 46.0 | 1372.0 | Repeat | Note=LRR 7 |
| Hgene | LRRC16A | chr6:25285137 | chr6:25820143 | ENST00000329474 | + | 2 | 37 | 543_566 | 46.0 | 1372.0 | Repeat | Note=LRR 8 |
| Hgene | LRRC16A | chr6:25285137 | chr6:25820143 | ENST00000329474 | + | 2 | 37 | 570_593 | 46.0 | 1372.0 | Repeat | Note=LRR 9 |
| Hgene | LRRC16A | chr6:25285137 | chr6:25820143 | ENST00000329474 | + | 2 | 37 | 654_678 | 46.0 | 1372.0 | Repeat | Note=LRR 10 |
| Hgene | LRRC16A | chr6:25285137 | chr6:25820143 | ENST00000329474 | + | 2 | 37 | 958_981 | 46.0 | 1372.0 | Repeat | Note=LRR 11 |
| Hgene | LRRC16A | chr6:25285137 | chr6:25820143 | ENST00000377969 | + | 2 | 12 | 245_269 | 0 | 177.0 | Repeat | Note=LRR 1 |
| Hgene | LRRC16A | chr6:25285137 | chr6:25820143 | ENST00000377969 | + | 2 | 12 | 275_298 | 0 | 177.0 | Repeat | Note=LRR 2 |
| Hgene | LRRC16A | chr6:25285137 | chr6:25820143 | ENST00000377969 | + | 2 | 12 | 304_327 | 0 | 177.0 | Repeat | Note=LRR 3 |
| Hgene | LRRC16A | chr6:25285137 | chr6:25820143 | ENST00000377969 | + | 2 | 12 | 336_363 | 0 | 177.0 | Repeat | Note=LRR 4 |
| Hgene | LRRC16A | chr6:25285137 | chr6:25820143 | ENST00000377969 | + | 2 | 12 | 391_418 | 0 | 177.0 | Repeat | Note=LRR 5 |
| Hgene | LRRC16A | chr6:25285137 | chr6:25820143 | ENST00000377969 | + | 2 | 12 | 423_447 | 0 | 177.0 | Repeat | Note=LRR 6 |
| Hgene | LRRC16A | chr6:25285137 | chr6:25820143 | ENST00000377969 | + | 2 | 12 | 481_506 | 0 | 177.0 | Repeat | Note=LRR 7 |
| Hgene | LRRC16A | chr6:25285137 | chr6:25820143 | ENST00000377969 | + | 2 | 12 | 543_566 | 0 | 177.0 | Repeat | Note=LRR 8 |
| Hgene | LRRC16A | chr6:25285137 | chr6:25820143 | ENST00000377969 | + | 2 | 12 | 570_593 | 0 | 177.0 | Repeat | Note=LRR 9 |
| Hgene | LRRC16A | chr6:25285137 | chr6:25820143 | ENST00000377969 | + | 2 | 12 | 654_678 | 0 | 177.0 | Repeat | Note=LRR 10 |
| Hgene | LRRC16A | chr6:25285137 | chr6:25820143 | ENST00000377969 | + | 2 | 12 | 958_981 | 0 | 177.0 | Repeat | Note=LRR 11 |
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Fusion Gene Sequence for LRRC16A-SLC17A1 |
| For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones. |
| >In-frame_ENST00000329474_ENST00000244527_TCGA-49-4487-01A_LRRC16A_chr6_25285137_+_SLC17A1_chr6_25820143_length(transcript)=2027nt_BP=506nt TGGGCGGGAGCTACGCCGGCCCAAGCCCCGCCGGGGACCAGCGAGCCGGGAGGAGGAGCAGGCGCCACAGCCGCCCCGCGCCCCGCGCCC GCTTGTAATCCGGTCCGCTCCTTATTCAGCCGCCGGGAACTGCGAGGAGGCGTCATGTAGCAGCAGCAGCAAATCCGCCTCGCATTTGCA ACTCTTTTTTTTTTTTTTGGTGGGGCGGGGGGCGCGCGGCAAAATTCTGTCTCCGCCCCCCCTTTTCTTGCCCACTTCCATTTGCAAGCT GCATCTGCCTCTCTAAAAAAATTGAGGAGTTCGGGGAAGGGCAGGGGGCCATAAATCAGAGTTGGACCTGCAATAACCCCCACACCTACA GGGCAACCATGACCGAGGAGAGCTCTGACGTTCCCAGGGAGTTGATAGAAAGCATAAAGGATGTTATTGGCAGAAAGATAAAAATTTCAG TGAAGAAGAAAGTAAAGTTGGAAGTTAAGGGAGACAAAGTTGAAAACAAAGTGCTGAACCCTATGTATAATTGGAGCCCAGATATCCAGG GAATCATCTTGAGTTCCACCTCCTATGGTGTCATCATCATCCAAGTTCCTGTTGGATACTTCTCTGGAATATATTCTACAAAGAAAATGA TTGGCTTTGCATTATGCCTCAGCTCTGTGTTAAGCCTGCTCATCCCACCAGCAGCTGGAATTGGAGTAGCTTGGGTCGTTGTATGTCGAG CAGTTCAGGGAGCAGCCCAGGGGATAGTTGCAACAGCCCAGTTTGAAATATATGTCAAATGGGCTCCTCCCCTGGAACGAGGCCGACTTA CTTCTATGAGTACATCAGGGTTTTTGCTGGGACCCTTTATTGTCCTACTTGTGACTGGAGTTATCTGTGAATCTCTGGGCTGGCCCATGG TCTTCTATATTTTTGGTGCTTGTGGCTGTGCCGTATGTCTTCTCTGGTTCGTTCTGTTTTATGATGACCCCAAAGACCACCCATGTATAA GCATCAGTGAAAAGGAATACATCACATCCTCCCTGGTCCAGCAGGTCAGTTCAAGTAGACAATCTCTGCCTATCAAGGCTATACTTAAGT CGCTTCCAGTCTGGGCTATTTCCACTGGTAGTTTTACGTTTTTCTGGTCACATAACATCATGACACTATACACTCCAATGTTTATCAACT CCATGCTTCATGTTAATATAAAAGAGAATGGGTTCTTGTCTTCCCTTCCCTATTTGTTTGCCTGGATCTGTGGTAACCTAGCAGGTCAGT TATCAGACTTCTTCCTGACCAGGAATATTCTCAGCGTAATTGCTGTCCGGAAACTCTTCACAGCAGCAGGATTTCTCCTTCCTGCAATCT TTGGTGTCTGCCTGCCTTACCTGAGTTCCACCTTCTACAGCATTGTCATTTTCCTAATACTTGCTGGTGCAACAGGCAGCTTTTGCTTGG GTGGAGTGTTTATAAATGGCTTGGATATTGCTCCCAGATATTTTGGATTTATTAAAGCATGTTCAACTTTAACTGGAATGATAGGAGGAC TAATTGCTTCCACTTTGACTGGATTGATCCTTAAGCAGGATCCGGAATCCGCCTGGTTTAAAACCTTCATCCTGATGGCAGCCATTAATG TGACTGGCCTAATTTTCTACCTTATAGTTGCTACAGCAGAAATTCAGGACTGGGCTAAAGAAAAACAACACACACGTCTCTGAAGTGTGA AACAGAGCACTTGCAGAGCCTGGGACAACCTCCTTATTGAAGGGAAGAGGGACCAGCACATGAGGCTGAGGCTGAGGGGCAGTCACCAGC ACCAGGAAGAAGGTGGTAGGAGGAGTCCTAGGGGCCAGTTTTACCCTCCCACATATCCTGTGTGCATCGTTTTTTAACATGTGTTGTTTG TAACATGTAATATATCTGAATTTTAAATGGGGGTGGTGATTTATCTCAGTCTTCCTCTCTGCATCAGTTGCTTTATAAATGATTGTCAAA >In-frame_ENST00000329474_ENST00000244527_TCGA-49-4487-01A_LRRC16A_chr6_25285137_+_SLC17A1_chr6_25820143_length(amino acids)=444AA_start in transcript=368_stop in transcript=1702 MTEESSDVPRELIESIKDVIGRKIKISVKKKVKLEVKGDKVENKVLNPMYNWSPDIQGIILSSTSYGVIIIQVPVGYFSGIYSTKKMIGF ALCLSSVLSLLIPPAAGIGVAWVVVCRAVQGAAQGIVATAQFEIYVKWAPPLERGRLTSMSTSGFLLGPFIVLLVTGVICESLGWPMVFY IFGACGCAVCLLWFVLFYDDPKDHPCISISEKEYITSSLVQQVSSSRQSLPIKAILKSLPVWAISTGSFTFFWSHNIMTLYTPMFINSML HVNIKENGFLSSLPYLFAWICGNLAGQLSDFFLTRNILSVIAVRKLFTAAGFLLPAIFGVCLPYLSSTFYSIVIFLILAGATGSFCLGGV -------------------------------------------------------------- >In-frame_ENST00000329474_ENST00000427328_TCGA-49-4487-01A_LRRC16A_chr6_25285137_+_SLC17A1_chr6_25820143_length(transcript)=1862nt_BP=506nt TGGGCGGGAGCTACGCCGGCCCAAGCCCCGCCGGGGACCAGCGAGCCGGGAGGAGGAGCAGGCGCCACAGCCGCCCCGCGCCCCGCGCCC GCTTGTAATCCGGTCCGCTCCTTATTCAGCCGCCGGGAACTGCGAGGAGGCGTCATGTAGCAGCAGCAGCAAATCCGCCTCGCATTTGCA ACTCTTTTTTTTTTTTTTGGTGGGGCGGGGGGCGCGCGGCAAAATTCTGTCTCCGCCCCCCCTTTTCTTGCCCACTTCCATTTGCAAGCT GCATCTGCCTCTCTAAAAAAATTGAGGAGTTCGGGGAAGGGCAGGGGGCCATAAATCAGAGTTGGACCTGCAATAACCCCCACACCTACA GGGCAACCATGACCGAGGAGAGCTCTGACGTTCCCAGGGAGTTGATAGAAAGCATAAAGGATGTTATTGGCAGAAAGATAAAAATTTCAG TGAAGAAGAAAGTAAAGTTGGAAGTTAAGGGAGACAAAGTTGAAAACAAAGTGCTGAACCCTATGTATAATTGGAGCCCAGATATCCAGG GAATCATCTTGAGTTCCACCTCCTATGGTGTCATCATCATCCAAGTTCCTGTTGGATACTTCTCTGGAATATATTCTACAAAGAAAATGA TTGGCTTTGCATTATGCCTCAGCTCTGTGTTAAGCCTGCTCATCCCACCAGCAGCTGGAATTGGAGTAGCTTGGGTCGTTGTATGTCGAG CAGTTCAGGGAGCAGCCCAGGGGATAGTTGCAACAGCCCAGTTTGAAATATATGTCAAATGGGCTCCTCCCCTGGAACGAGGCCGACTTA CTTCTATGAGTACATCAGGGTTTTTGCTGGGACCCTTTATTGTCCTACTTGTGACTGGAGTTATCTGTGAATCTCTGGGCTGGCCCATGG TCTTCTATATTTTTGGTGCTTGTGGCTGTGCCGTATGTCTTCTCTGGTTCGTTCTGTTTTATGATGACCCCAAAGACCACCCATGTATAA GCATCAGTGAAAAGGAATACATCACATCCTCCCTGGTCCAGCAGAATGGGTTCTTGTCTTCCCTTCCCTATTTGTTTGCCTGGATCTGTG GTAACCTAGCAGGTCAGTTATCAGACTTCTTCCTGACCAGGAATATTCTCAGCGTAATTGCTGTCCGGAAACTCTTCACAGCAGCAGGAT TTCTCCTTCCTGCAATCTTTGGTGTCTGCCTGCCTTACCTGAGTTCCACCTTCTACAGCATTGTCATTTTCCTAATACTTGCTGGTGCAA CAGGCAGCTTTTGCTTGGGTGGAGTGTTTATAAATGGCTTGGATATTGCTCCCAGATATTTTGGATTTATTAAAGCATGTTCAACTTTAA CTGGAATGATAGGAGGACTAATTGCTTCCACTTTGACTGGATTGATCCTTAAGCAGGATCCGGAATCCGCCTGGTTTAAAACCTTCATCC TGATGGCAGCCATTAATGTGACTGGCCTAATTTTCTACCTTATAGTTGCTACAGCAGAAATTCAGGACTGGGCTAAAGAAAAACAACACA CACGTCTCTGAAGTGTGAAACAGAGCACTTGCAGAGCCTGGGACAACCTCCTTATTGAAGGGAAGAGGGACCAGCACATGAGGCTGAGGC TGAGGGGCAGTCACCAGCACCAGGAAGAAGGTGGTAGGAGGAGTCCTAGGGGCCAGTTTTACCCTCCCACATATCCTGTGTGCATCGTTT TTTAACATGTGTTGTTTGTAACATGTAATATATCTGAATTTTAAATGGGGGTGGTGATTTATCTCAGTCTTCCTCTCTGCATCAGTTGCT >In-frame_ENST00000329474_ENST00000427328_TCGA-49-4487-01A_LRRC16A_chr6_25285137_+_SLC17A1_chr6_25820143_length(amino acids)=390AA_start in transcript=368_stop in transcript=1540 MTEESSDVPRELIESIKDVIGRKIKISVKKKVKLEVKGDKVENKVLNPMYNWSPDIQGIILSSTSYGVIIIQVPVGYFSGIYSTKKMIGF ALCLSSVLSLLIPPAAGIGVAWVVVCRAVQGAAQGIVATAQFEIYVKWAPPLERGRLTSMSTSGFLLGPFIVLLVTGVICESLGWPMVFY IFGACGCAVCLLWFVLFYDDPKDHPCISISEKEYITSSLVQQNGFLSSLPYLFAWICGNLAGQLSDFFLTRNILSVIAVRKLFTAAGFLL PAIFGVCLPYLSSTFYSIVIFLILAGATGSFCLGGVFINGLDIAPRYFGFIKACSTLTGMIGGLIASTLTGLILKQDPESAWFKTFILMA -------------------------------------------------------------- >In-frame_ENST00000329474_ENST00000476801_TCGA-49-4487-01A_LRRC16A_chr6_25285137_+_SLC17A1_chr6_25820143_length(transcript)=1905nt_BP=506nt TGGGCGGGAGCTACGCCGGCCCAAGCCCCGCCGGGGACCAGCGAGCCGGGAGGAGGAGCAGGCGCCACAGCCGCCCCGCGCCCCGCGCCC GCTTGTAATCCGGTCCGCTCCTTATTCAGCCGCCGGGAACTGCGAGGAGGCGTCATGTAGCAGCAGCAGCAAATCCGCCTCGCATTTGCA ACTCTTTTTTTTTTTTTTGGTGGGGCGGGGGGCGCGCGGCAAAATTCTGTCTCCGCCCCCCCTTTTCTTGCCCACTTCCATTTGCAAGCT GCATCTGCCTCTCTAAAAAAATTGAGGAGTTCGGGGAAGGGCAGGGGGCCATAAATCAGAGTTGGACCTGCAATAACCCCCACACCTACA GGGCAACCATGACCGAGGAGAGCTCTGACGTTCCCAGGGAGTTGATAGAAAGCATAAAGGATGTTATTGGCAGAAAGATAAAAATTTCAG TGAAGAAGAAAGTAAAGTTGGAAGTTAAGGGAGACAAAGTTGAAAACAAAGTGCTGAACCCTATGTATAATTGGAGCCCAGATATCCAGG GAATCATCTTGAGTTCCACCTCCTATGGTGTCATCATCATCCAAGTTCCTGTTGGATACTTCTCTGGAATATATTCTACAAAGAAAATGA TTGGCTTTGCATTATGCCTCAGCTCTGTGTTAAGCCTGCTCATCCCACCAGCAGCTGGAATTGGAGTAGCTTGGGTCGTTGTATGTCGAG CAGTTCAGGGAGCAGCCCAGGGGATAGTTGCAACAGCCCAGTTTGAAATATATGTCAAATGGGCTCCTCCCCTGGAACGAGGCCGACTTA CTTCTATGAGTACATCAGGGTTTTTGCTGGGACCCTTTATTGTCCTACTTGTGACTGGAGTTATCTGTGAATCTCTGGGCTGGCCCATGG TCTTCTATATTTTTGGTGCTTGTGGCTGTGCCGTATGTCTTCTCTGGTTCGTTCTGTTTTATGATGACCCCAAAGACCACCCATGTATAA GCATCAGTGAAAAGGAATACATCACATCCTCCCTGGTCCAGCAGGTCAGTTCAAGTAGACAATCTCTGCCTATCAAGGCTATACTTAAGT CGCTTCCAGTCTGGGCTATTTCCACTGGTAGTTTTACGTTTTTCTGGTCACATAACATCATGACACTATACACTCCAATGTTTATCAACT CCATGCTTCATGTTAATATAAAAGAGAATGGGTTCTTGTCTTCCCTTCCCTATTTGTTTGCCTGGATCTGTGGTAACCTAGCAGGTCAGT TATCAGACTTCTTCCTGACCAGGAATATTCTCAGCGTAATTGCTGTCCGGAAACTCTTCACAGCAGCAGGATTTCTCCTTCCTGCAATCT TTGGTGTCTGCCTGCCTTACCTGAGTTCCACCTTCTACAGCATTGTCATTTTCCTAATACTTGCTGGTGCAACAGGCAGCTTTTGCTTGG GTGGAGTGTTTATAAATGGCTTGGATATTGCTCCCAGATATTTTGGATTTATTAAAGCATGTTCAACTTTAACTGGAATGATAGGAGGAC TAATTGCTTCCACTTTGACTGGATTGATCCTTAAGCAGGATCCGGAATCCGCCTGGTTTAAAACCTTCATCCTGATGGCAGCCATTAATG TGACTGGCCTAATTTTCTACCTTATAGTTGCTACAGCAGAAATTCAGGACTGGGCTAAAGAAAAACAACACACACGTCTCTGAAGGTGAG AAGTGATCAGATTAAGGACAATTTTTGAAACTGGGAATGCAGGAGACAGAGGAGATAAGGATGACTCCTCAGACGAGAAGGAATAACGGG TGCAGGTTTGGAGAAGAGGAGACCATGTTAAGCCTGAGAATATTAGACATCCTGAAATGGCTGTGGGACTCTGTGGGGATGCTAAGGCTG >In-frame_ENST00000329474_ENST00000476801_TCGA-49-4487-01A_LRRC16A_chr6_25285137_+_SLC17A1_chr6_25820143_length(amino acids)=444AA_start in transcript=368_stop in transcript=1702 MTEESSDVPRELIESIKDVIGRKIKISVKKKVKLEVKGDKVENKVLNPMYNWSPDIQGIILSSTSYGVIIIQVPVGYFSGIYSTKKMIGF ALCLSSVLSLLIPPAAGIGVAWVVVCRAVQGAAQGIVATAQFEIYVKWAPPLERGRLTSMSTSGFLLGPFIVLLVTGVICESLGWPMVFY IFGACGCAVCLLWFVLFYDDPKDHPCISISEKEYITSSLVQQVSSSRQSLPIKAILKSLPVWAISTGSFTFFWSHNIMTLYTPMFINSML HVNIKENGFLSSLPYLFAWICGNLAGQLSDFFLTRNILSVIAVRKLFTAAGFLLPAIFGVCLPYLSSTFYSIVIFLILAGATGSFCLGGV -------------------------------------------------------------- >In-frame_ENST00000329474_ENST00000468082_TCGA-49-4487-01A_LRRC16A_chr6_25285137_+_SLC17A1_chr6_25820143_length(transcript)=1541nt_BP=506nt TGGGCGGGAGCTACGCCGGCCCAAGCCCCGCCGGGGACCAGCGAGCCGGGAGGAGGAGCAGGCGCCACAGCCGCCCCGCGCCCCGCGCCC GCTTGTAATCCGGTCCGCTCCTTATTCAGCCGCCGGGAACTGCGAGGAGGCGTCATGTAGCAGCAGCAGCAAATCCGCCTCGCATTTGCA ACTCTTTTTTTTTTTTTTGGTGGGGCGGGGGGCGCGCGGCAAAATTCTGTCTCCGCCCCCCCTTTTCTTGCCCACTTCCATTTGCAAGCT GCATCTGCCTCTCTAAAAAAATTGAGGAGTTCGGGGAAGGGCAGGGGGCCATAAATCAGAGTTGGACCTGCAATAACCCCCACACCTACA GGGCAACCATGACCGAGGAGAGCTCTGACGTTCCCAGGGAGTTGATAGAAAGCATAAAGGATGTTATTGGCAGAAAGATAAAAATTTCAG TGAAGAAGAAAGTAAAGTTGGAAGTTAAGGGAGACAAAGTTGAAAACAAAGTGCTGAACCCTATGTATAATTGGAGCCCAGATATCCAGG GAATCATCTTGAGTTCCACCTCCTATGGTGTCATCATCATCCAAGTTCCTGTTGGATACTTCTCTGGAATATATTCTACAAAGAAAATGA TTGGCTTTGCATTATGCCTCAGCTCTGTGTTAAGCCTGCTCATCCCACCAGCAGCTGGAATTGGAGTAGCTTGGGTCGTTGTATGTCGAG CAGTTCAGGGAGCAGCCCAGGGGATAGTTGCAACAGCCCAGTTTGAAATATATGTCAAATGGGCTCCTCCCCTGGAACGAGGCCGACTTA CTTCTATGAGTACATCAGGGTTTTTGCTGGGACCCTTTATTGTCCTACTTGTGACTGGAGTTATCTGTGAATCTCTGGGCTGGCCCATGG TCTTCTATATTTTTGGTGCTTGTGGCTGTGCCGTATGTCTTCTCTGGTTCGTTCTGTTTTATGATGACCCCAAAGACCACCCATGTATAA GCATCAGTGAAAAGGAATACATCACATCCTCCCTGGTCCAGCAGAATGGGTTCTTGTCTTCCCTTCCCTATTTGTTTGCCTGGATCTGTG GTAACCTAGCAGGTCAGTTATCAGACTTCTTCCTGACCAGGAATATTCTCAGCGTAATTGCTGTCCGGAAACTCTTCACAGCAGCAGGAT TTCTCCTTCCTGCAATCTTTGGTGTCTGCCTGCCTTACCTGAGTTCCACCTTCTACAGCATTGTCATTTTCCTAATACTTGCTGGTGCAA CAGGCAGCTTTTGCTTGGGTGGAGTGTTTATAAATGGCTTGGATATTGCTCCCAGATATTTTGGATTTATTAAAGCATGTTCAACTTTAA CTGGAATGATAGGAGGACTAATTGCTTCCACTTTGACTGGATTGATCCTTAAGCAGGATCCGGAATCCGCCTGGTTTAAAACCTTCATCC TGATGGCAGCCATTAATGTGACTGGCCTAATTTTCTACCTTATAGTTGCTACAGCAGAAATTCAGGACTGGGCTAAAGAAAAACAACACA >In-frame_ENST00000329474_ENST00000468082_TCGA-49-4487-01A_LRRC16A_chr6_25285137_+_SLC17A1_chr6_25820143_length(amino acids)=391AA_start in transcript=368_stop in transcript=1540 MTEESSDVPRELIESIKDVIGRKIKISVKKKVKLEVKGDKVENKVLNPMYNWSPDIQGIILSSTSYGVIIIQVPVGYFSGIYSTKKMIGF ALCLSSVLSLLIPPAAGIGVAWVVVCRAVQGAAQGIVATAQFEIYVKWAPPLERGRLTSMSTSGFLLGPFIVLLVTGVICESLGWPMVFY IFGACGCAVCLLWFVLFYDDPKDHPCISISEKEYITSSLVQQNGFLSSLPYLFAWICGNLAGQLSDFFLTRNILSVIAVRKLFTAAGFLL PAIFGVCLPYLSSTFYSIVIFLILAGATGSFCLGGVFINGLDIAPRYFGFIKACSTLTGMIGGLIASTLTGLILKQDPESAWFKTFILMA -------------------------------------------------------------- |
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Fusion Gene PPI Analysis for LRRC16A-SLC17A1 |
| Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in |
| Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
| Hgene | Hgene's interactors | Tgene | Tgene's interactors |
| - Retained PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
| - Lost PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
| - Retained PPIs, but lost function due to frame-shift fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Related Drugs for LRRC16A-SLC17A1 |
| Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.8 2021-05-08) |
| Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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Related Diseases for LRRC16A-SLC17A1 |
| Diseases associated with fusion partners. (DisGeNet 4.0) |
| Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
| Tgene | SLC17A1 | C0023893 | Liver Cirrhosis, Experimental | 2 | CTD_human |
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