|
Fusion Gene Summary | |
Fusion Gene ORF analysis | |
Fusion Genomic Features | |
Fusion Protein Features | |
Fusion Gene Sequence | |
Fusion Gene PPI analysis | |
Related Drugs | |
Related Diseases |
Fusion gene:MICALL2-HDAC9 (FusionGDB2 ID:53233) |
Fusion Gene Summary for MICALL2-HDAC9 |
Fusion gene summary |
Fusion gene information | Fusion gene name: MICALL2-HDAC9 | Fusion gene ID: 53233 | Hgene | Tgene | Gene symbol | MICALL2 | HDAC9 | Gene ID | 79778 | 9734 |
Gene name | MICAL like 2 | histone deacetylase 9 | |
Synonyms | JRAB|MICAL-L2 | HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR | |
Cytomap | 7p22.3 | 7p21.1 | |
Type of gene | protein-coding | protein-coding | |
Description | MICAL-like protein 2junctional Rab13-binding proteinmolecule interacting with CasL-like 2 | histone deacetylase 9MEF-2 interacting transcription repressor (MITR) proteinhistone deacetylase 4/5-related proteinhistone deacetylase 7B | |
Modification date | 20200313 | 20200322 | |
UniProtAcc | Q8IY33 | Q9UKV0 | |
Ensembl transtripts involved in fusion gene | ENST00000405088, ENST00000471899, ENST00000297508, | ENST00000406451, ENST00000401921, ENST00000432645, ENST00000441542, ENST00000417496, ENST00000476135, ENST00000405010, ENST00000428307, ENST00000406072, ENST00000456174, ENST00000524023, | |
Fusion gene scores | * DoF score | 12 X 8 X 8=768 | 12 X 10 X 6=720 |
# samples | 16 | 12 | |
** MAII score | log2(16/768*10)=-2.26303440583379 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(12/720*10)=-2.58496250072116 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
Context | PubMed: MICALL2 [Title/Abstract] AND HDAC9 [Title/Abstract] AND fusion [Title/Abstract] | ||
Most frequent breakpoint | MICALL2(1484288)-HDAC9(18684294), # samples:3 | ||
Anticipated loss of major functional domain due to fusion event. | MICALL2-HDAC9 seems lost the major protein functional domain in Hgene partner, which is a essential gene due to the frame-shifted ORF. MICALL2-HDAC9 seems lost the major protein functional domain in Tgene partner, which is a IUPHAR drug target due to the frame-shifted ORF. MICALL2-HDAC9 seems lost the major protein functional domain in Tgene partner, which is a epigenetic factor due to the frame-shifted ORF. |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
Partner | Gene | GO ID | GO term | PubMed ID |
Tgene | HDAC9 | GO:0000122 | negative regulation of transcription by RNA polymerase II | 10655483|11535832 |
Tgene | HDAC9 | GO:0016575 | histone deacetylation | 11535832 |
Tgene | HDAC9 | GO:0032869 | cellular response to insulin stimulus | 19303849 |
Tgene | HDAC9 | GO:0034983 | peptidyl-lysine deacetylation | 11535832 |
Tgene | HDAC9 | GO:0042632 | cholesterol homeostasis | 28855441 |
Tgene | HDAC9 | GO:0045892 | negative regulation of transcription, DNA-templated | 11535832 |
Tgene | HDAC9 | GO:0050710 | negative regulation of cytokine secretion | 28855441 |
Tgene | HDAC9 | GO:0051005 | negative regulation of lipoprotein lipase activity | 28855441 |
Tgene | HDAC9 | GO:0070932 | histone H3 deacetylation | 12590135 |
Tgene | HDAC9 | GO:0070933 | histone H4 deacetylation | 12590135 |
Tgene | HDAC9 | GO:1990678 | histone H4-K16 deacetylation | 28855441 |
Fusion gene breakpoints across MICALL2 (5'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
Fusion gene breakpoints across HDAC9 (3'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Source | Disease | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
ChimerDB4 | SKCM | TCGA-EB-A44R-06A | MICALL2 | chr7 | 1484288 | - | HDAC9 | chr7 | 18684294 | + |
ChimerDB4 | SKCM | TCGA-EB-A44R-06A | MICALL2 | chr7 | 1484288 | - | HDAC9 | chr7 | 18684294 | + |
ChimerDB4 | SKCM | TCGA-EB-A44R-06A | MICALL2 | chr7 | 1484288 | - | HDAC9 | chr7 | 18684294 | + |
Top |
Fusion Gene ORF analysis for MICALL2-HDAC9 |
Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
Frame-shift | ENST00000405088 | ENST00000406451 | MICALL2 | chr7 | 1484288 | - | HDAC9 | chr7 | 18684294 | + |
Frame-shift | ENST00000405088 | ENST00000401921 | MICALL2 | chr7 | 1484288 | - | HDAC9 | chr7 | 18684294 | + |
Frame-shift | ENST00000405088 | ENST00000432645 | MICALL2 | chr7 | 1484288 | - | HDAC9 | chr7 | 18684294 | + |
Frame-shift | ENST00000405088 | ENST00000441542 | MICALL2 | chr7 | 1484288 | - | HDAC9 | chr7 | 18684294 | + |
Frame-shift | ENST00000405088 | ENST00000417496 | MICALL2 | chr7 | 1484288 | - | HDAC9 | chr7 | 18684294 | + |
5CDS-intron | ENST00000405088 | ENST00000476135 | MICALL2 | chr7 | 1484288 | - | HDAC9 | chr7 | 18684294 | + |
5CDS-intron | ENST00000405088 | ENST00000405010 | MICALL2 | chr7 | 1484288 | - | HDAC9 | chr7 | 18684294 | + |
5CDS-intron | ENST00000405088 | ENST00000428307 | MICALL2 | chr7 | 1484288 | - | HDAC9 | chr7 | 18684294 | + |
5CDS-intron | ENST00000405088 | ENST00000406072 | MICALL2 | chr7 | 1484288 | - | HDAC9 | chr7 | 18684294 | + |
5CDS-intron | ENST00000405088 | ENST00000456174 | MICALL2 | chr7 | 1484288 | - | HDAC9 | chr7 | 18684294 | + |
5CDS-intron | ENST00000405088 | ENST00000524023 | MICALL2 | chr7 | 1484288 | - | HDAC9 | chr7 | 18684294 | + |
intron-3CDS | ENST00000471899 | ENST00000406451 | MICALL2 | chr7 | 1484288 | - | HDAC9 | chr7 | 18684294 | + |
intron-3CDS | ENST00000471899 | ENST00000401921 | MICALL2 | chr7 | 1484288 | - | HDAC9 | chr7 | 18684294 | + |
intron-3CDS | ENST00000471899 | ENST00000432645 | MICALL2 | chr7 | 1484288 | - | HDAC9 | chr7 | 18684294 | + |
intron-3CDS | ENST00000471899 | ENST00000441542 | MICALL2 | chr7 | 1484288 | - | HDAC9 | chr7 | 18684294 | + |
intron-3CDS | ENST00000471899 | ENST00000417496 | MICALL2 | chr7 | 1484288 | - | HDAC9 | chr7 | 18684294 | + |
intron-intron | ENST00000471899 | ENST00000476135 | MICALL2 | chr7 | 1484288 | - | HDAC9 | chr7 | 18684294 | + |
intron-intron | ENST00000471899 | ENST00000405010 | MICALL2 | chr7 | 1484288 | - | HDAC9 | chr7 | 18684294 | + |
intron-intron | ENST00000471899 | ENST00000428307 | MICALL2 | chr7 | 1484288 | - | HDAC9 | chr7 | 18684294 | + |
intron-intron | ENST00000471899 | ENST00000406072 | MICALL2 | chr7 | 1484288 | - | HDAC9 | chr7 | 18684294 | + |
intron-intron | ENST00000471899 | ENST00000456174 | MICALL2 | chr7 | 1484288 | - | HDAC9 | chr7 | 18684294 | + |
intron-intron | ENST00000471899 | ENST00000524023 | MICALL2 | chr7 | 1484288 | - | HDAC9 | chr7 | 18684294 | + |
Frame-shift | ENST00000297508 | ENST00000406451 | MICALL2 | chr7 | 1484288 | - | HDAC9 | chr7 | 18684294 | + |
Frame-shift | ENST00000297508 | ENST00000401921 | MICALL2 | chr7 | 1484288 | - | HDAC9 | chr7 | 18684294 | + |
Frame-shift | ENST00000297508 | ENST00000432645 | MICALL2 | chr7 | 1484288 | - | HDAC9 | chr7 | 18684294 | + |
Frame-shift | ENST00000297508 | ENST00000441542 | MICALL2 | chr7 | 1484288 | - | HDAC9 | chr7 | 18684294 | + |
Frame-shift | ENST00000297508 | ENST00000417496 | MICALL2 | chr7 | 1484288 | - | HDAC9 | chr7 | 18684294 | + |
5CDS-intron | ENST00000297508 | ENST00000476135 | MICALL2 | chr7 | 1484288 | - | HDAC9 | chr7 | 18684294 | + |
5CDS-intron | ENST00000297508 | ENST00000405010 | MICALL2 | chr7 | 1484288 | - | HDAC9 | chr7 | 18684294 | + |
5CDS-intron | ENST00000297508 | ENST00000428307 | MICALL2 | chr7 | 1484288 | - | HDAC9 | chr7 | 18684294 | + |
5CDS-intron | ENST00000297508 | ENST00000406072 | MICALL2 | chr7 | 1484288 | - | HDAC9 | chr7 | 18684294 | + |
5CDS-intron | ENST00000297508 | ENST00000456174 | MICALL2 | chr7 | 1484288 | - | HDAC9 | chr7 | 18684294 | + |
5CDS-intron | ENST00000297508 | ENST00000524023 | MICALL2 | chr7 | 1484288 | - | HDAC9 | chr7 | 18684294 | + |
ORFfinder result based on the fusion transcript sequence of in-frame fusion genes. |
Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | Seq length (transcript) | BP loci (transcript) | Predicted start (transcript) | Predicted stop (transcript) | Seq length (amino acids) |
DeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated. |
Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | No-coding score | Coding score |
Top |
Fusion Genomic Features for MICALL2-HDAC9 |
FusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints. |
Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | 1-p | p (fusion gene breakpoint) |
Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page. |
Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page. |
Top |
Fusion Protein Features for MICALL2-HDAC9 |
Go to FGviewer for the breakpoints of :-: - FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels. |
Main function of each fusion partner protein. (from UniProt) |
Hgene | Tgene |
MICALL2 | HDAC9 |
FUNCTION: Effector of small Rab GTPases which is involved in junctional complexes assembly through the regulation of cell adhesion molecules transport to the plasma membrane and actin cytoskeleton reorganization. Regulates the endocytic recycling of occludins, claudins and E-cadherin to the plasma membrane and may thereby regulate the establishment of tight junctions and adherens junctions. In parallel, may regulate actin cytoskeleton reorganization directly through interaction with F-actin or indirectly through actinins and filamins. Most probably involved in the processes of epithelial cell differentiation, cell spreading and neurite outgrowth (By similarity). {ECO:0000250}. | FUNCTION: Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Represses MEF2-dependent transcription.; FUNCTION: Isoform 3 lacks active site residues and therefore is catalytically inactive. Represses MEF2-dependent transcription by recruiting HDAC1 and/or HDAC3. Seems to inhibit skeletal myogenesis and to be involved in heart development. Protects neurons from apoptosis, both by inhibiting JUN phosphorylation by MAPK10 and by repressing JUN transcription via HDAC1 recruitment to JUN promoter. |
Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Top |
Fusion Gene Sequence for MICALL2-HDAC9 |
For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones. |
Top |
Fusion Gene PPI Analysis for MICALL2-HDAC9 |
Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in |
Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
Hgene | Hgene's interactors | Tgene | Tgene's interactors |
- Retained PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
- Lost PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
- Retained PPIs, but lost function due to frame-shift fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
Top |
Related Drugs for MICALL2-HDAC9 |
Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.8 2021-05-08) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
Tgene | HDAC9 | Q9UKV0 | DB00313 | Valproic acid | Inhibitor | Small molecule | Approved|Investigational |
Tgene | HDAC9 | Q9UKV0 | DB00313 | Valproic acid | Inhibitor | Small molecule | Approved|Investigational |
Tgene | HDAC9 | Q9UKV0 | DB00313 | Valproic acid | Inhibitor | Small molecule | Approved|Investigational |
Tgene | HDAC9 | Q9UKV0 | DB00313 | Valproic acid | Inhibitor | Small molecule | Approved|Investigational |
Tgene | HDAC9 | Q9UKV0 | DB00313 | Valproic acid | Inhibitor | Small molecule | Approved|Investigational |
Tgene | HDAC9 | Q9UKV0 | DB00313 | Valproic acid | Inhibitor | Small molecule | Approved|Investigational |
Top |
Related Diseases for MICALL2-HDAC9 |
Diseases associated with fusion partners. (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Tgene | HDAC9 | C0011570 | Mental Depression | 2 | PSYGENET |
Tgene | HDAC9 | C0036341 | Schizophrenia | 2 | PSYGENET |
Tgene | HDAC9 | C0011581 | Depressive disorder | 1 | PSYGENET |
Tgene | HDAC9 | C0029410 | Osteoarthritis of hip | 1 | CTD_human |
Tgene | HDAC9 | C0038454 | Cerebrovascular accident | 1 | CTD_human |
Tgene | HDAC9 | C0041696 | Unipolar Depression | 1 | PSYGENET |
Tgene | HDAC9 | C0751956 | Acute Cerebrovascular Accidents | 1 | CTD_human |