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Fusion Gene Summary | |
Fusion Gene ORF analysis | |
Fusion Genomic Features | |
Fusion Protein Features | |
Fusion Gene Sequence | |
Fusion Gene PPI analysis | |
Related Drugs | |
Related Diseases |
Fusion gene:API5-FOLH1 (FusionGDB2 ID:5523) |
Fusion Gene Summary for API5-FOLH1 |
Fusion gene summary |
Fusion gene information | Fusion gene name: API5-FOLH1 | Fusion gene ID: 5523 | Hgene | Tgene | Gene symbol | API5 | FOLH1 | Gene ID | 8539 | 2346 |
Gene name | apoptosis inhibitor 5 | folate hydrolase 1 | |
Synonyms | AAC-11|AAC11 | FGCP|FOLH|GCP2|GCPII|NAALAD1|NAALAdase|PSM|PSMA|mGCP | |
Cytomap | 11p12 | 11p11.12 | |
Type of gene | protein-coding | protein-coding | |
Description | apoptosis inhibitor 5FIFantiapoptosis clone 11 proteincell migration-inducing gene 8 proteinfibroblast growth factor 2-interacting factor 2migration-inducing protein MIG8 | glutamate carboxypeptidase 2N-acetylated alpha-linked acidic dipeptidase 1N-acetylated-alpha-linked acidic dipeptidase INAALADase Icell growth-inhibiting gene 27 proteinfolylpoly-gamma-glutamate carboxypeptidaseglutamate carboxylase IIglutamate car | |
Modification date | 20200313 | 20200313 | |
UniProtAcc | Q9BZZ5 | Q9HBA9 | |
Ensembl transtripts involved in fusion gene | ENST00000534695, ENST00000455725, ENST00000531273, ENST00000420461, ENST00000378852, ENST00000534600, ENST00000529334, | ENST00000256999, ENST00000356696, ENST00000343844, ENST00000340334, ENST00000533034, ENST00000525629, | |
Fusion gene scores | * DoF score | 7 X 5 X 5=175 | 7 X 6 X 5=210 |
# samples | 7 | 7 | |
** MAII score | log2(7/175*10)=-1.32192809488736 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(7/210*10)=-1.58496250072116 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
Context | PubMed: API5 [Title/Abstract] AND FOLH1 [Title/Abstract] AND fusion [Title/Abstract] | ||
Most frequent breakpoint | API5(43357544)-FOLH1(49168497), # samples:2 | ||
Anticipated loss of major functional domain due to fusion event. | API5-FOLH1 seems lost the major protein functional domain in Hgene partner, which is a essential gene due to the frame-shifted ORF. API5-FOLH1 seems lost the major protein functional domain in Tgene partner, which is a IUPHAR drug target due to the frame-shifted ORF. |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
Partner | Gene | GO ID | GO term | PubMed ID |
Tgene | FOLH1 | GO:0006508 | proteolysis | 12949938 |
Tgene | FOLH1 | GO:0035609 | C-terminal protein deglutamylation | 12949938|17241121|24863754 |
Fusion gene breakpoints across API5 (5'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
Fusion gene breakpoints across FOLH1 (3'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Source | Disease | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
ChimerDB4 | LUSC | TCGA-39-5016-01A | API5 | chr11 | 43357544 | + | FOLH1 | chr11 | 49168497 | - |
ChimerDB4 | LUSC | TCGA-39-5016 | API5 | chr11 | 43357544 | + | FOLH1 | chr11 | 49168497 | - |
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Fusion Gene ORF analysis for API5-FOLH1 |
Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
intron-3CDS | ENST00000534695 | ENST00000256999 | API5 | chr11 | 43357544 | + | FOLH1 | chr11 | 49168497 | - |
intron-3CDS | ENST00000534695 | ENST00000356696 | API5 | chr11 | 43357544 | + | FOLH1 | chr11 | 49168497 | - |
intron-3CDS | ENST00000534695 | ENST00000343844 | API5 | chr11 | 43357544 | + | FOLH1 | chr11 | 49168497 | - |
intron-3CDS | ENST00000534695 | ENST00000340334 | API5 | chr11 | 43357544 | + | FOLH1 | chr11 | 49168497 | - |
intron-3CDS | ENST00000534695 | ENST00000533034 | API5 | chr11 | 43357544 | + | FOLH1 | chr11 | 49168497 | - |
intron-intron | ENST00000534695 | ENST00000525629 | API5 | chr11 | 43357544 | + | FOLH1 | chr11 | 49168497 | - |
Frame-shift | ENST00000455725 | ENST00000256999 | API5 | chr11 | 43357544 | + | FOLH1 | chr11 | 49168497 | - |
Frame-shift | ENST00000455725 | ENST00000356696 | API5 | chr11 | 43357544 | + | FOLH1 | chr11 | 49168497 | - |
In-frame | ENST00000455725 | ENST00000343844 | API5 | chr11 | 43357544 | + | FOLH1 | chr11 | 49168497 | - |
Frame-shift | ENST00000455725 | ENST00000340334 | API5 | chr11 | 43357544 | + | FOLH1 | chr11 | 49168497 | - |
Frame-shift | ENST00000455725 | ENST00000533034 | API5 | chr11 | 43357544 | + | FOLH1 | chr11 | 49168497 | - |
5CDS-intron | ENST00000455725 | ENST00000525629 | API5 | chr11 | 43357544 | + | FOLH1 | chr11 | 49168497 | - |
Frame-shift | ENST00000531273 | ENST00000256999 | API5 | chr11 | 43357544 | + | FOLH1 | chr11 | 49168497 | - |
Frame-shift | ENST00000531273 | ENST00000356696 | API5 | chr11 | 43357544 | + | FOLH1 | chr11 | 49168497 | - |
In-frame | ENST00000531273 | ENST00000343844 | API5 | chr11 | 43357544 | + | FOLH1 | chr11 | 49168497 | - |
Frame-shift | ENST00000531273 | ENST00000340334 | API5 | chr11 | 43357544 | + | FOLH1 | chr11 | 49168497 | - |
Frame-shift | ENST00000531273 | ENST00000533034 | API5 | chr11 | 43357544 | + | FOLH1 | chr11 | 49168497 | - |
5CDS-intron | ENST00000531273 | ENST00000525629 | API5 | chr11 | 43357544 | + | FOLH1 | chr11 | 49168497 | - |
Frame-shift | ENST00000420461 | ENST00000256999 | API5 | chr11 | 43357544 | + | FOLH1 | chr11 | 49168497 | - |
Frame-shift | ENST00000420461 | ENST00000356696 | API5 | chr11 | 43357544 | + | FOLH1 | chr11 | 49168497 | - |
In-frame | ENST00000420461 | ENST00000343844 | API5 | chr11 | 43357544 | + | FOLH1 | chr11 | 49168497 | - |
Frame-shift | ENST00000420461 | ENST00000340334 | API5 | chr11 | 43357544 | + | FOLH1 | chr11 | 49168497 | - |
Frame-shift | ENST00000420461 | ENST00000533034 | API5 | chr11 | 43357544 | + | FOLH1 | chr11 | 49168497 | - |
5CDS-intron | ENST00000420461 | ENST00000525629 | API5 | chr11 | 43357544 | + | FOLH1 | chr11 | 49168497 | - |
Frame-shift | ENST00000378852 | ENST00000256999 | API5 | chr11 | 43357544 | + | FOLH1 | chr11 | 49168497 | - |
Frame-shift | ENST00000378852 | ENST00000356696 | API5 | chr11 | 43357544 | + | FOLH1 | chr11 | 49168497 | - |
In-frame | ENST00000378852 | ENST00000343844 | API5 | chr11 | 43357544 | + | FOLH1 | chr11 | 49168497 | - |
Frame-shift | ENST00000378852 | ENST00000340334 | API5 | chr11 | 43357544 | + | FOLH1 | chr11 | 49168497 | - |
Frame-shift | ENST00000378852 | ENST00000533034 | API5 | chr11 | 43357544 | + | FOLH1 | chr11 | 49168497 | - |
5CDS-intron | ENST00000378852 | ENST00000525629 | API5 | chr11 | 43357544 | + | FOLH1 | chr11 | 49168497 | - |
Frame-shift | ENST00000534600 | ENST00000256999 | API5 | chr11 | 43357544 | + | FOLH1 | chr11 | 49168497 | - |
Frame-shift | ENST00000534600 | ENST00000356696 | API5 | chr11 | 43357544 | + | FOLH1 | chr11 | 49168497 | - |
Frame-shift | ENST00000534600 | ENST00000343844 | API5 | chr11 | 43357544 | + | FOLH1 | chr11 | 49168497 | - |
In-frame | ENST00000534600 | ENST00000340334 | API5 | chr11 | 43357544 | + | FOLH1 | chr11 | 49168497 | - |
In-frame | ENST00000534600 | ENST00000533034 | API5 | chr11 | 43357544 | + | FOLH1 | chr11 | 49168497 | - |
5CDS-intron | ENST00000534600 | ENST00000525629 | API5 | chr11 | 43357544 | + | FOLH1 | chr11 | 49168497 | - |
3UTR-3CDS | ENST00000529334 | ENST00000256999 | API5 | chr11 | 43357544 | + | FOLH1 | chr11 | 49168497 | - |
3UTR-3CDS | ENST00000529334 | ENST00000356696 | API5 | chr11 | 43357544 | + | FOLH1 | chr11 | 49168497 | - |
3UTR-3CDS | ENST00000529334 | ENST00000343844 | API5 | chr11 | 43357544 | + | FOLH1 | chr11 | 49168497 | - |
3UTR-3CDS | ENST00000529334 | ENST00000340334 | API5 | chr11 | 43357544 | + | FOLH1 | chr11 | 49168497 | - |
3UTR-3CDS | ENST00000529334 | ENST00000533034 | API5 | chr11 | 43357544 | + | FOLH1 | chr11 | 49168497 | - |
3UTR-intron | ENST00000529334 | ENST00000525629 | API5 | chr11 | 43357544 | + | FOLH1 | chr11 | 49168497 | - |
ORFfinder result based on the fusion transcript sequence of in-frame fusion genes. |
Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | Seq length (transcript) | BP loci (transcript) | Predicted start (transcript) | Predicted stop (transcript) | Seq length (amino acids) |
ENST00000455725 | API5 | chr11 | 43357544 | + | ENST00000343844 | FOLH1 | chr11 | 49168497 | - | 2014 | 1704 | 245 | 1825 | 526 |
ENST00000531273 | API5 | chr11 | 43357544 | + | ENST00000343844 | FOLH1 | chr11 | 49168497 | - | 1941 | 1631 | 121 | 1752 | 543 |
ENST00000420461 | API5 | chr11 | 43357544 | + | ENST00000343844 | FOLH1 | chr11 | 49168497 | - | 1770 | 1460 | 112 | 1581 | 489 |
ENST00000378852 | API5 | chr11 | 43357544 | + | ENST00000343844 | FOLH1 | chr11 | 49168497 | - | 1927 | 1617 | 107 | 1738 | 543 |
ENST00000534600 | API5 | chr11 | 43357544 | + | ENST00000340334 | FOLH1 | chr11 | 49168497 | - | 1933 | 1623 | 14 | 1390 | 458 |
ENST00000534600 | API5 | chr11 | 43357544 | + | ENST00000533034 | FOLH1 | chr11 | 49168497 | - | 1818 | 1623 | 14 | 1390 | 458 |
DeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated. |
Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | No-coding score | Coding score |
ENST00000455725 | ENST00000343844 | API5 | chr11 | 43357544 | + | FOLH1 | chr11 | 49168497 | - | 0.002748607 | 0.99725133 |
ENST00000531273 | ENST00000343844 | API5 | chr11 | 43357544 | + | FOLH1 | chr11 | 49168497 | - | 0.001128636 | 0.9988714 |
ENST00000420461 | ENST00000343844 | API5 | chr11 | 43357544 | + | FOLH1 | chr11 | 49168497 | - | 0.001245286 | 0.99875474 |
ENST00000378852 | ENST00000343844 | API5 | chr11 | 43357544 | + | FOLH1 | chr11 | 49168497 | - | 0.001146797 | 0.9988532 |
ENST00000534600 | ENST00000340334 | API5 | chr11 | 43357544 | + | FOLH1 | chr11 | 49168497 | - | 0.000448475 | 0.9995515 |
ENST00000534600 | ENST00000533034 | API5 | chr11 | 43357544 | + | FOLH1 | chr11 | 49168497 | - | 0.00059217 | 0.9994079 |
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Fusion Genomic Features for API5-FOLH1 |
FusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints. |
Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | 1-p | p (fusion gene breakpoint) |
Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page. |
Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page. |
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Fusion Protein Features for API5-FOLH1 |
Go to FGviewer for the breakpoints of chr11:43357544-chr11:49168497 - FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels. |
Main function of each fusion partner protein. (from UniProt) |
Hgene | Tgene |
API5 | FOLH1 |
FUNCTION: Antiapoptotic factor that may have a role in protein assembly. Negatively regulates ACIN1. By binding to ACIN1, it suppresses ACIN1 cleavage from CASP3 and ACIN1-mediated DNA fragmentation. Also known to efficiently suppress E2F1-induced apoptosis. Its depletion enhances the cytotoxic action of the chemotherapeutic drugs. {ECO:0000269|PubMed:10780674, ECO:0000269|PubMed:17112319, ECO:0000269|PubMed:19387494}. | FUNCTION: Has both folate hydrolase and N-acetylated-alpha-linked-acidic dipeptidase (NAALADase) activity. {ECO:0000250}.; FUNCTION: Exhibits a dipeptidyl-peptidase IV type activity. {ECO:0000250}. |
Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | API5 | chr11:43357544 | chr11:49168497 | ENST00000378852 | + | 13 | 14 | 454_475 | 497.3333333333333 | 505.0 | Motif | Nuclear localization signal |
Hgene | API5 | chr11:43357544 | chr11:49168497 | ENST00000531273 | + | 13 | 14 | 454_475 | 497.3333333333333 | 525.0 | Motif | Nuclear localization signal |
Hgene | API5 | chr11:43357544 | chr11:49168497 | ENST00000378852 | + | 13 | 14 | 2_360 | 497.3333333333333 | 505.0 | Region | Note=ARM-like and Heat-like helical repeats |
Hgene | API5 | chr11:43357544 | chr11:49168497 | ENST00000378852 | + | 13 | 14 | 370_391 | 497.3333333333333 | 505.0 | Region | Note=Leucine-zipper |
Hgene | API5 | chr11:43357544 | chr11:49168497 | ENST00000420461 | + | 12 | 13 | 2_360 | 443.3333333333333 | 451.0 | Region | Note=ARM-like and Heat-like helical repeats |
Hgene | API5 | chr11:43357544 | chr11:49168497 | ENST00000420461 | + | 12 | 13 | 370_391 | 443.3333333333333 | 451.0 | Region | Note=Leucine-zipper |
Hgene | API5 | chr11:43357544 | chr11:49168497 | ENST00000531273 | + | 13 | 14 | 2_360 | 497.3333333333333 | 525.0 | Region | Note=ARM-like and Heat-like helical repeats |
Hgene | API5 | chr11:43357544 | chr11:49168497 | ENST00000531273 | + | 13 | 14 | 370_391 | 497.3333333333333 | 525.0 | Region | Note=Leucine-zipper |
Tgene | FOLH1 | chr11:43357544 | chr11:49168497 | ENST00000256999 | 17 | 19 | 699_700 | 687.6666666666666 | 751.0 | Region | Substrate binding | |
Tgene | FOLH1 | chr11:43357544 | chr11:49168497 | ENST00000340334 | 18 | 20 | 699_700 | 672.6666666666666 | 736.0 | Region | Substrate binding | |
Tgene | FOLH1 | chr11:43357544 | chr11:49168497 | ENST00000343844 | 15 | 17 | 517_518 | 379.6666666666667 | 443.0 | Region | Substrate binding | |
Tgene | FOLH1 | chr11:43357544 | chr11:49168497 | ENST00000343844 | 15 | 17 | 534_536 | 379.6666666666667 | 443.0 | Region | Substrate binding | |
Tgene | FOLH1 | chr11:43357544 | chr11:49168497 | ENST00000343844 | 15 | 17 | 552_553 | 379.6666666666667 | 443.0 | Region | Substrate binding | |
Tgene | FOLH1 | chr11:43357544 | chr11:49168497 | ENST00000343844 | 15 | 17 | 699_700 | 379.6666666666667 | 443.0 | Region | Substrate binding | |
Tgene | FOLH1 | chr11:43357544 | chr11:49168497 | ENST00000356696 | 16 | 18 | 699_700 | 656.6666666666666 | 720.0 | Region | Substrate binding | |
Tgene | FOLH1 | chr11:43357544 | chr11:49168497 | ENST00000533034 | 17 | 19 | 699_700 | 641.6666666666666 | 705.0 | Region | Substrate binding |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | API5 | chr11:43357544 | chr11:49168497 | ENST00000420461 | + | 12 | 13 | 454_475 | 443.3333333333333 | 451.0 | Motif | Nuclear localization signal |
Tgene | FOLH1 | chr11:43357544 | chr11:49168497 | ENST00000256999 | 17 | 19 | 146_149 | 687.6666666666666 | 751.0 | Compositional bias | Poly-Pro | |
Tgene | FOLH1 | chr11:43357544 | chr11:49168497 | ENST00000340334 | 18 | 20 | 146_149 | 672.6666666666666 | 736.0 | Compositional bias | Poly-Pro | |
Tgene | FOLH1 | chr11:43357544 | chr11:49168497 | ENST00000343844 | 15 | 17 | 146_149 | 379.6666666666667 | 443.0 | Compositional bias | Poly-Pro | |
Tgene | FOLH1 | chr11:43357544 | chr11:49168497 | ENST00000356696 | 16 | 18 | 146_149 | 656.6666666666666 | 720.0 | Compositional bias | Poly-Pro | |
Tgene | FOLH1 | chr11:43357544 | chr11:49168497 | ENST00000533034 | 17 | 19 | 146_149 | 641.6666666666666 | 705.0 | Compositional bias | Poly-Pro | |
Tgene | FOLH1 | chr11:43357544 | chr11:49168497 | ENST00000256999 | 17 | 19 | 274_587 | 687.6666666666666 | 751.0 | Region | Note=NAALADase | |
Tgene | FOLH1 | chr11:43357544 | chr11:49168497 | ENST00000256999 | 17 | 19 | 517_518 | 687.6666666666666 | 751.0 | Region | Substrate binding | |
Tgene | FOLH1 | chr11:43357544 | chr11:49168497 | ENST00000256999 | 17 | 19 | 534_536 | 687.6666666666666 | 751.0 | Region | Substrate binding | |
Tgene | FOLH1 | chr11:43357544 | chr11:49168497 | ENST00000256999 | 17 | 19 | 552_553 | 687.6666666666666 | 751.0 | Region | Substrate binding | |
Tgene | FOLH1 | chr11:43357544 | chr11:49168497 | ENST00000340334 | 18 | 20 | 274_587 | 672.6666666666666 | 736.0 | Region | Note=NAALADase | |
Tgene | FOLH1 | chr11:43357544 | chr11:49168497 | ENST00000340334 | 18 | 20 | 517_518 | 672.6666666666666 | 736.0 | Region | Substrate binding | |
Tgene | FOLH1 | chr11:43357544 | chr11:49168497 | ENST00000340334 | 18 | 20 | 534_536 | 672.6666666666666 | 736.0 | Region | Substrate binding | |
Tgene | FOLH1 | chr11:43357544 | chr11:49168497 | ENST00000340334 | 18 | 20 | 552_553 | 672.6666666666666 | 736.0 | Region | Substrate binding | |
Tgene | FOLH1 | chr11:43357544 | chr11:49168497 | ENST00000343844 | 15 | 17 | 274_587 | 379.6666666666667 | 443.0 | Region | Note=NAALADase | |
Tgene | FOLH1 | chr11:43357544 | chr11:49168497 | ENST00000356696 | 16 | 18 | 274_587 | 656.6666666666666 | 720.0 | Region | Note=NAALADase | |
Tgene | FOLH1 | chr11:43357544 | chr11:49168497 | ENST00000356696 | 16 | 18 | 517_518 | 656.6666666666666 | 720.0 | Region | Substrate binding | |
Tgene | FOLH1 | chr11:43357544 | chr11:49168497 | ENST00000356696 | 16 | 18 | 534_536 | 656.6666666666666 | 720.0 | Region | Substrate binding | |
Tgene | FOLH1 | chr11:43357544 | chr11:49168497 | ENST00000356696 | 16 | 18 | 552_553 | 656.6666666666666 | 720.0 | Region | Substrate binding | |
Tgene | FOLH1 | chr11:43357544 | chr11:49168497 | ENST00000533034 | 17 | 19 | 274_587 | 641.6666666666666 | 705.0 | Region | Note=NAALADase | |
Tgene | FOLH1 | chr11:43357544 | chr11:49168497 | ENST00000533034 | 17 | 19 | 517_518 | 641.6666666666666 | 705.0 | Region | Substrate binding | |
Tgene | FOLH1 | chr11:43357544 | chr11:49168497 | ENST00000533034 | 17 | 19 | 534_536 | 641.6666666666666 | 705.0 | Region | Substrate binding | |
Tgene | FOLH1 | chr11:43357544 | chr11:49168497 | ENST00000533034 | 17 | 19 | 552_553 | 641.6666666666666 | 705.0 | Region | Substrate binding | |
Tgene | FOLH1 | chr11:43357544 | chr11:49168497 | ENST00000256999 | 17 | 19 | 1_19 | 687.6666666666666 | 751.0 | Topological domain | Cytoplasmic | |
Tgene | FOLH1 | chr11:43357544 | chr11:49168497 | ENST00000256999 | 17 | 19 | 44_750 | 687.6666666666666 | 751.0 | Topological domain | Extracellular | |
Tgene | FOLH1 | chr11:43357544 | chr11:49168497 | ENST00000340334 | 18 | 20 | 1_19 | 672.6666666666666 | 736.0 | Topological domain | Cytoplasmic | |
Tgene | FOLH1 | chr11:43357544 | chr11:49168497 | ENST00000340334 | 18 | 20 | 44_750 | 672.6666666666666 | 736.0 | Topological domain | Extracellular | |
Tgene | FOLH1 | chr11:43357544 | chr11:49168497 | ENST00000343844 | 15 | 17 | 1_19 | 379.6666666666667 | 443.0 | Topological domain | Cytoplasmic | |
Tgene | FOLH1 | chr11:43357544 | chr11:49168497 | ENST00000343844 | 15 | 17 | 44_750 | 379.6666666666667 | 443.0 | Topological domain | Extracellular | |
Tgene | FOLH1 | chr11:43357544 | chr11:49168497 | ENST00000356696 | 16 | 18 | 1_19 | 656.6666666666666 | 720.0 | Topological domain | Cytoplasmic | |
Tgene | FOLH1 | chr11:43357544 | chr11:49168497 | ENST00000356696 | 16 | 18 | 44_750 | 656.6666666666666 | 720.0 | Topological domain | Extracellular | |
Tgene | FOLH1 | chr11:43357544 | chr11:49168497 | ENST00000533034 | 17 | 19 | 1_19 | 641.6666666666666 | 705.0 | Topological domain | Cytoplasmic | |
Tgene | FOLH1 | chr11:43357544 | chr11:49168497 | ENST00000533034 | 17 | 19 | 44_750 | 641.6666666666666 | 705.0 | Topological domain | Extracellular | |
Tgene | FOLH1 | chr11:43357544 | chr11:49168497 | ENST00000256999 | 17 | 19 | 20_43 | 687.6666666666666 | 751.0 | Transmembrane | Helical%3B Signal-anchor for type II membrane protein | |
Tgene | FOLH1 | chr11:43357544 | chr11:49168497 | ENST00000340334 | 18 | 20 | 20_43 | 672.6666666666666 | 736.0 | Transmembrane | Helical%3B Signal-anchor for type II membrane protein | |
Tgene | FOLH1 | chr11:43357544 | chr11:49168497 | ENST00000343844 | 15 | 17 | 20_43 | 379.6666666666667 | 443.0 | Transmembrane | Helical%3B Signal-anchor for type II membrane protein | |
Tgene | FOLH1 | chr11:43357544 | chr11:49168497 | ENST00000356696 | 16 | 18 | 20_43 | 656.6666666666666 | 720.0 | Transmembrane | Helical%3B Signal-anchor for type II membrane protein | |
Tgene | FOLH1 | chr11:43357544 | chr11:49168497 | ENST00000533034 | 17 | 19 | 20_43 | 641.6666666666666 | 705.0 | Transmembrane | Helical%3B Signal-anchor for type II membrane protein |
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Fusion Gene Sequence for API5-FOLH1 |
For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones. |
>In-frame_ENST00000455725_ENST00000343844_TCGA-39-5016-01A_API5_chr11_43357544_+_FOLH1_chr11_49168497_length(transcript)=2014nt_BP=1704nt GCAGCCGCGCTGTGCGCGGTGACTGGCGGCTGCACTGGCGGCAGCTGGAGGTGTAATAGTGCGGGTAGTGGGTTTGGAGAAGTTCCGAGG CGGCGGTGGCGCCGGTCAGGACAAGGATAGCGGAACCGGGCCCTGGGCTTGTCGCTCACCATGCCGACAGTAGAGGAGCTTTACCGCAAT TATGGCATCCTGGCCGATGCCACGGAGCAAGTGGGCCAGACTCATCCATCTCCCCCAACTCAAAAATGAAACAAAGATGGAGGGAGAACG GAATTGGGAAGCATAAAGATGCCTATCAAGTGATATTGGATGGTGTGAAAGGTGGTACTAAGGAAAAGCGATTAGCAGCTCAATTTATTC CGAAATTCTTTAAGCATTTTCCAGAATTGGCTGATTCTGCTATCAATGCACAGTTAGACCTCTGTGAGGATGAAGATGTATCTATTCGAC GTCAAGCAATTAAAGAACTGCCTCAATTTGCCACTGGAGAAAATCTTCCTCGAGTGGCAGATATACTAACGCAACTTTTGCAGACAGATG ACTCTGCAGAATTTAACCTAGTGAACAATGCCCTATTAAGTATATTTAAAATGGATGCAAAAGGGACTTTAGGTGGGTTGTTCAGCCAAA TACTTCAAGGAGAGGACATTGTTAGAGAACGAGCAATTAAATTCCTTTCTACAAAACTTAAGACTTTACCAGATGAAGTCTTAACAAAGG AAGTGGAAGAGCTTATACTAACTGAATCCAAAAAGGTCCTAGAAGATGTGACTGGTGAAGAATTTGTTCTATTTATGAAGATACTGTCTG GGTTAAAAAGCTTACAGACAGTGAGTGGAAGACAGCAACTTGTAGAGTTGGTGGCTGAACAGGCCGACCTAGAACAGACCTTCAATCCCT CGGATCCTGACTGTGTGGACAGGCTCTTACAGTGCACTCGGCAGGCAGTACCCCTCTTCTCTAAAAATGTCCATTCCACAAGGTTTGTGA CATATTTCTGTGAGCAGGTTCTCCCTAACCTCGGTACCTTGACTACCCCAGTGGAAGGTCTTGATATACAGTTGGAGGTATTGAAATTGT TGGCGGAGATGAGTTCATTTTGTGGTGACATGGAAAAACTAGAAACAAATTTAAGGAAACTATTTGATAAGTTATTGGAATACATGCCCC TCCCTCCAGAAGAGGCAGAAAATGGAGAGAATGCTGGTAATGAAGAACCCAAGCTACAGTTCAGTTATGTGGAATGTTTGTTGTACAGTT TTCACCAGTTGGGCCGAAAACTTCCAGATTTCTTAACAGCCAAACTGAATGCAGAAAAGCTCAAAGATTTCAAAATCAGGCTGCAGTACT TTGCACGGGGCCTGCAAGTTTATATCAGACAACTTCGCTTAGCTCTCCAGGGTAAAACGGGTGAGGCCTTAAAAACAGAAGAGAACAAGA TTAAAGTCGTTGCATTGAAAATAACAAACAATATCAATGTTTTAATCAAGGATCTCTTCCACATTCCTCCTTCTTATAAGAGCACAGTAA CACTATCCTGGAAACCTGTACAAAAGGTTGAGATTGGGCAAAAGAGAGCCAGTGAAGATACAACTTCAGGTTCACCACCCAAGAAATCTT CAGCAGGACCAAAAAGAGATGCCAGGCAGATTTATAACCCTCCCAGTGGGAAATATAGCAGCAATTTGGGCAACTTTAATTATGGCATGT CATCTATGCTCCAAGCAGCCACAACAAGTATGCAGGGGAGTCATTCCCAGGAATTTATGATGCTCTGTTTGATATTGAAAGCAAAGTGGA CCCTTCCAAGGCCTGGGGAGAAGTGAAGAGACAGATTTATGTTGCAGCCTTCACAGTGCAGGCAGCTGCAGAGACTTTGAGTGAAGTAGC CTAAGAGGATTCTTTAGAGAATCCGTATTGAATTTGTGTGGTATGTCACTCAGAAAGAATCGTAATGGGTATATTGATAAATTTTAAAAT >In-frame_ENST00000455725_ENST00000343844_TCGA-39-5016-01A_API5_chr11_43357544_+_FOLH1_chr11_49168497_length(amino acids)=526AA_start in transcript=245_stop in transcript=1825 MKQRWRENGIGKHKDAYQVILDGVKGGTKEKRLAAQFIPKFFKHFPELADSAINAQLDLCEDEDVSIRRQAIKELPQFATGENLPRVADI LTQLLQTDDSAEFNLVNNALLSIFKMDAKGTLGGLFSQILQGEDIVRERAIKFLSTKLKTLPDEVLTKEVEELILTESKKVLEDVTGEEF VLFMKILSGLKSLQTVSGRQQLVELVAEQADLEQTFNPSDPDCVDRLLQCTRQAVPLFSKNVHSTRFVTYFCEQVLPNLGTLTTPVEGLD IQLEVLKLLAEMSSFCGDMEKLETNLRKLFDKLLEYMPLPPEEAENGENAGNEEPKLQFSYVECLLYSFHQLGRKLPDFLTAKLNAEKLK DFKIRLQYFARGLQVYIRQLRLALQGKTGEALKTEENKIKVVALKITNNINVLIKDLFHIPPSYKSTVTLSWKPVQKVEIGQKRASEDTT -------------------------------------------------------------- >In-frame_ENST00000531273_ENST00000343844_TCGA-39-5016-01A_API5_chr11_43357544_+_FOLH1_chr11_49168497_length(transcript)=1941nt_BP=1631nt GTGCGCGGTGACTGGCGGCTGCACTGGCGGCAGCTGGAGGTGTAATAGTGCGGGTAGTGGGTTTGGAGAAGTTCCGAGGCGGCGGTGGCG CCGGTCAGGACAAGGATAGCGGAACCGGGCCCTGGGCTTGTCGCTCACCATGCCGACAGTAGAGGAGCTTTACCGCAATTATGGCATCCT GGCCGATGCCACGGAGCAAGTGGGCCAGCATAAAGATGCCTATCAAGTGATATTGGATGGTGTGAAAGGTGGTACTAAGGAAAAGCGATT AGCAGCTCAATTTATTCCGAAATTCTTTAAGCATTTTCCAGAATTGGCTGATTCTGCTATCAATGCACAGTTAGACCTCTGTGAGGATGA AGATGTATCTATTCGACGTCAAGCAATTAAAGAACTGCCTCAATTTGCCACTGGAGAAAATCTTCCTCGAGTGGCAGATATACTAACGCA ACTTTTGCAGACAGATGACTCTGCAGAATTTAACCTAGTGAACAATGCCCTATTAAGTATATTTAAAATGGATGCAAAAGGGACTTTAGG TGGGTTGTTCAGCCAAATACTTCAAGGAGAGGACATTGTTAGAGAACGAGCAATTAAATTCCTTTCTACAAAACTTAAGACTTTACCAGA TGAAGTCTTAACAAAGGAAGTGGAAGAGCTTATACTAACTGAATCCAAAAAGGTCCTAGAAGATGTGACTGGTGAAGAATTTGTTCTATT TATGAAGATACTGTCTGGGTTAAAAAGCTTACAGACAGTGAGTGGAAGACAGCAACTTGTAGAGTTGGTGGCTGAACAGGCCGACCTAGA ACAGACCTTCAATCCCTCGGATCCTGACTGTGTGGACAGGCTCTTACAGTGCACTCGGCAGGCAGTACCCCTCTTCTCTAAAAATGTCCA TTCCACAAGGTTTGTGACATATTTCTGTGAGCAGGTTCTCCCTAACCTCGGTACCTTGACTACCCCAGTGGAAGGTCTTGATATACAGTT GGAGGTATTGAAATTGTTGGCGGAGATGAGTTCATTTTGTGGTGACATGGAAAAACTAGAAACAAATTTAAGGAAACTATTTGATAAGTT ATTGGAATACATGCCCCTCCCTCCAGAAGAGGCAGAAAATGGAGAGAATGCTGGTAATGAAGAACCCAAGCTACAGTTCAGTTATGTGGA ATGTTTGTTGTACAGTTTTCACCAGTTGGGCCGAAAACTTCCAGATTTCTTAACAGCCAAACTGAATGCAGAAAAGCTCAAAGATTTCAA AATCAGGCTGCAGTACTTTGCACGGGGCCTGCAAGTTTATATCAGACAACTTCGCTTAGCTCTCCAGGGTAAAACGGGTGAGGCCTTAAA AACAGAAGAGAACAAGATTAAAGTCGTTGCATTGAAAATAACAAACAATATCAATGTTTTAATCAAGGATCTCTTCCACATTCCTCCTTC TTATAAGAGCACAGTAACACTATCCTGGAAACCTGTACAAAAGGTTGAGATTGGGCAAAAGAGAGCCAGTGAAGATACAACTTCAGGTTC ACCACCCAAGAAATCTTCAGCAGGACCAAAAAGAGATGCCAGGCAGATTTATAACCCTCCCAGTGGGAAATATAGCAGCAATTTGGGCAA CTTTAATTATGGCATGTCATCTATGCTCCAAGCAGCCACAACAAGTATGCAGGGGAGTCATTCCCAGGAATTTATGATGCTCTGTTTGAT ATTGAAAGCAAAGTGGACCCTTCCAAGGCCTGGGGAGAAGTGAAGAGACAGATTTATGTTGCAGCCTTCACAGTGCAGGCAGCTGCAGAG ACTTTGAGTGAAGTAGCCTAAGAGGATTCTTTAGAGAATCCGTATTGAATTTGTGTGGTATGTCACTCAGAAAGAATCGTAATGGGTATA >In-frame_ENST00000531273_ENST00000343844_TCGA-39-5016-01A_API5_chr11_43357544_+_FOLH1_chr11_49168497_length(amino acids)=543AA_start in transcript=121_stop in transcript=1752 MGLSLTMPTVEELYRNYGILADATEQVGQHKDAYQVILDGVKGGTKEKRLAAQFIPKFFKHFPELADSAINAQLDLCEDEDVSIRRQAIK ELPQFATGENLPRVADILTQLLQTDDSAEFNLVNNALLSIFKMDAKGTLGGLFSQILQGEDIVRERAIKFLSTKLKTLPDEVLTKEVEEL ILTESKKVLEDVTGEEFVLFMKILSGLKSLQTVSGRQQLVELVAEQADLEQTFNPSDPDCVDRLLQCTRQAVPLFSKNVHSTRFVTYFCE QVLPNLGTLTTPVEGLDIQLEVLKLLAEMSSFCGDMEKLETNLRKLFDKLLEYMPLPPEEAENGENAGNEEPKLQFSYVECLLYSFHQLG RKLPDFLTAKLNAEKLKDFKIRLQYFARGLQVYIRQLRLALQGKTGEALKTEENKIKVVALKITNNINVLIKDLFHIPPSYKSTVTLSWK PVQKVEIGQKRASEDTTSGSPPKKSSAGPKRDARQIYNPPSGKYSSNLGNFNYGMSSMLQAATTSMQGSHSQEFMMLCLILKAKWTLPRP -------------------------------------------------------------- >In-frame_ENST00000420461_ENST00000343844_TCGA-39-5016-01A_API5_chr11_43357544_+_FOLH1_chr11_49168497_length(transcript)=1770nt_BP=1460nt GACTGGCGGCTGCACTGGCGGCAGCTGGAGGTGTAATAGTGCGGGTAGTGGGTTTGGAGAAGTTCCGAGGCGGCGGTGGCGCCGGTCAGG ACAAGGATAGCGGAACCGGGCCCTGGGCTTGTCGCTCACCATGCCGACAGTAGAGGAGCTTTACCGCAATTATGGCATCCTGGCCGATGC CACGGAGCAAGTGGGCCAGATTCGACGTCAAGCAATTAAAGAACTGCCTCAATTTGCCACTGGAGAAAATCTTCCTCGAGTGGCAGATAT ACTAACGCAACTTTTGCAGACAGATGACTCTGCAGAATTTAACCTAGTGAACAATGCCCTATTAAGTATATTTAAAATGGATGCAAAAGG GACTTTAGGTGGGTTGTTCAGCCAAATACTTCAAGGAGAGGACATTGTTAGAGAACGAGCAATTAAATTCCTTTCTACAAAACTTAAGAC TTTACCAGATGAAGTCTTAACAAAGGAAGTGGAAGAGCTTATACTAACTGAATCCAAAAAGGTCCTAGAAGATGTGACTGGTGAAGAATT TGTTCTATTTATGAAGATACTGTCTGGGTTAAAAAGCTTACAGACAGTGAGTGGAAGACAGCAACTTGTAGAGTTGGTGGCTGAACAGGC CGACCTAGAACAGACCTTCAATCCCTCGGATCCTGACTGTGTGGACAGGCTCTTACAGTGCACTCGGCAGGCAGTACCCCTCTTCTCTAA AAATGTCCATTCCACAAGGTTTGTGACATATTTCTGTGAGCAGGTTCTCCCTAACCTCGGTACCTTGACTACCCCAGTGGAAGGTCTTGA TATACAGTTGGAGGTATTGAAATTGTTGGCGGAGATGAGTTCATTTTGTGGTGACATGGAAAAACTAGAAACAAATTTAAGGAAACTATT TGATAAGTTATTGGAATACATGCCCCTCCCTCCAGAAGAGGCAGAAAATGGAGAGAATGCTGGTAATGAAGAACCCAAGCTACAGTTCAG TTATGTGGAATGTTTGTTGTACAGTTTTCACCAGTTGGGCCGAAAACTTCCAGATTTCTTAACAGCCAAACTGAATGCAGAAAAGCTCAA AGATTTCAAAATCAGGCTGCAGTACTTTGCACGGGGCCTGCAAGTTTATATCAGACAACTTCGCTTAGCTCTCCAGGGTAAAACGGGTGA GGCCTTAAAAACAGAAGAGAACAAGATTAAAGTCGTTGCATTGAAAATAACAAACAATATCAATGTTTTAATCAAGGATCTCTTCCACAT TCCTCCTTCTTATAAGAGCACAGTAACACTATCCTGGAAACCTGTACAAAAGGTTGAGATTGGGCAAAAGAGAGCCAGTGAAGATACAAC TTCAGGTTCACCACCCAAGAAATCTTCAGCAGGACCAAAAAGAGATGCCAGGCAGATTTATAACCCTCCCAGTGGGAAATATAGCAGCAA TTTGGGCAACTTTAATTATGGCATGTCATCTATGCTCCAAGCAGCCACAACAAGTATGCAGGGGAGTCATTCCCAGGAATTTATGATGCT CTGTTTGATATTGAAAGCAAAGTGGACCCTTCCAAGGCCTGGGGAGAAGTGAAGAGACAGATTTATGTTGCAGCCTTCACAGTGCAGGCA GCTGCAGAGACTTTGAGTGAAGTAGCCTAAGAGGATTCTTTAGAGAATCCGTATTGAATTTGTGTGGTATGTCACTCAGAAAGAATCGTA >In-frame_ENST00000420461_ENST00000343844_TCGA-39-5016-01A_API5_chr11_43357544_+_FOLH1_chr11_49168497_length(amino acids)=489AA_start in transcript=112_stop in transcript=1581 MGLSLTMPTVEELYRNYGILADATEQVGQIRRQAIKELPQFATGENLPRVADILTQLLQTDDSAEFNLVNNALLSIFKMDAKGTLGGLFS QILQGEDIVRERAIKFLSTKLKTLPDEVLTKEVEELILTESKKVLEDVTGEEFVLFMKILSGLKSLQTVSGRQQLVELVAEQADLEQTFN PSDPDCVDRLLQCTRQAVPLFSKNVHSTRFVTYFCEQVLPNLGTLTTPVEGLDIQLEVLKLLAEMSSFCGDMEKLETNLRKLFDKLLEYM PLPPEEAENGENAGNEEPKLQFSYVECLLYSFHQLGRKLPDFLTAKLNAEKLKDFKIRLQYFARGLQVYIRQLRLALQGKTGEALKTEEN KIKVVALKITNNINVLIKDLFHIPPSYKSTVTLSWKPVQKVEIGQKRASEDTTSGSPPKKSSAGPKRDARQIYNPPSGKYSSNLGNFNYG -------------------------------------------------------------- >In-frame_ENST00000378852_ENST00000343844_TCGA-39-5016-01A_API5_chr11_43357544_+_FOLH1_chr11_49168497_length(transcript)=1927nt_BP=1617nt GCGGCTGCACTGGCGGCAGCTGGAGGTGTAATAGTGCGGGTAGTGGGTTTGGAGAAGTTCCGAGGCGGCGGTGGCGCCGGTCAGGACAAG GATAGCGGAACCGGGCCCTGGGCTTGTCGCTCACCATGCCGACAGTAGAGGAGCTTTACCGCAATTATGGCATCCTGGCCGATGCCACGG AGCAAGTGGGCCAGCATAAAGATGCCTATCAAGTGATATTGGATGGTGTGAAAGGTGGTACTAAGGAAAAGCGATTAGCAGCTCAATTTA TTCCGAAATTCTTTAAGCATTTTCCAGAATTGGCTGATTCTGCTATCAATGCACAGTTAGACCTCTGTGAGGATGAAGATGTATCTATTC GACGTCAAGCAATTAAAGAACTGCCTCAATTTGCCACTGGAGAAAATCTTCCTCGAGTGGCAGATATACTAACGCAACTTTTGCAGACAG ATGACTCTGCAGAATTTAACCTAGTGAACAATGCCCTATTAAGTATATTTAAAATGGATGCAAAAGGGACTTTAGGTGGGTTGTTCAGCC AAATACTTCAAGGAGAGGACATTGTTAGAGAACGAGCAATTAAATTCCTTTCTACAAAACTTAAGACTTTACCAGATGAAGTCTTAACAA AGGAAGTGGAAGAGCTTATACTAACTGAATCCAAAAAGGTCCTAGAAGATGTGACTGGTGAAGAATTTGTTCTATTTATGAAGATACTGT CTGGGTTAAAAAGCTTACAGACAGTGAGTGGAAGACAGCAACTTGTAGAGTTGGTGGCTGAACAGGCCGACCTAGAACAGACCTTCAATC CCTCGGATCCTGACTGTGTGGACAGGCTCTTACAGTGCACTCGGCAGGCAGTACCCCTCTTCTCTAAAAATGTCCATTCCACAAGGTTTG TGACATATTTCTGTGAGCAGGTTCTCCCTAACCTCGGTACCTTGACTACCCCAGTGGAAGGTCTTGATATACAGTTGGAGGTATTGAAAT TGTTGGCGGAGATGAGTTCATTTTGTGGTGACATGGAAAAACTAGAAACAAATTTAAGGAAACTATTTGATAAGTTATTGGAATACATGC CCCTCCCTCCAGAAGAGGCAGAAAATGGAGAGAATGCTGGTAATGAAGAACCCAAGCTACAGTTCAGTTATGTGGAATGTTTGTTGTACA GTTTTCACCAGTTGGGCCGAAAACTTCCAGATTTCTTAACAGCCAAACTGAATGCAGAAAAGCTCAAAGATTTCAAAATCAGGCTGCAGT ACTTTGCACGGGGCCTGCAAGTTTATATCAGACAACTTCGCTTAGCTCTCCAGGGTAAAACGGGTGAGGCCTTAAAAACAGAAGAGAACA AGATTAAAGTCGTTGCATTGAAAATAACAAACAATATCAATGTTTTAATCAAGGATCTCTTCCACATTCCTCCTTCTTATAAGAGCACAG TAACACTATCCTGGAAACCTGTACAAAAGGTTGAGATTGGGCAAAAGAGAGCCAGTGAAGATACAACTTCAGGTTCACCACCCAAGAAAT CTTCAGCAGGACCAAAAAGAGATGCCAGGCAGATTTATAACCCTCCCAGTGGGAAATATAGCAGCAATTTGGGCAACTTTAATTATGGCA TGTCATCTATGCTCCAAGCAGCCACAACAAGTATGCAGGGGAGTCATTCCCAGGAATTTATGATGCTCTGTTTGATATTGAAAGCAAAGT GGACCCTTCCAAGGCCTGGGGAGAAGTGAAGAGACAGATTTATGTTGCAGCCTTCACAGTGCAGGCAGCTGCAGAGACTTTGAGTGAAGT AGCCTAAGAGGATTCTTTAGAGAATCCGTATTGAATTTGTGTGGTATGTCACTCAGAAAGAATCGTAATGGGTATATTGATAAATTTTAA >In-frame_ENST00000378852_ENST00000343844_TCGA-39-5016-01A_API5_chr11_43357544_+_FOLH1_chr11_49168497_length(amino acids)=543AA_start in transcript=107_stop in transcript=1738 MGLSLTMPTVEELYRNYGILADATEQVGQHKDAYQVILDGVKGGTKEKRLAAQFIPKFFKHFPELADSAINAQLDLCEDEDVSIRRQAIK ELPQFATGENLPRVADILTQLLQTDDSAEFNLVNNALLSIFKMDAKGTLGGLFSQILQGEDIVRERAIKFLSTKLKTLPDEVLTKEVEEL ILTESKKVLEDVTGEEFVLFMKILSGLKSLQTVSGRQQLVELVAEQADLEQTFNPSDPDCVDRLLQCTRQAVPLFSKNVHSTRFVTYFCE QVLPNLGTLTTPVEGLDIQLEVLKLLAEMSSFCGDMEKLETNLRKLFDKLLEYMPLPPEEAENGENAGNEEPKLQFSYVECLLYSFHQLG RKLPDFLTAKLNAEKLKDFKIRLQYFARGLQVYIRQLRLALQGKTGEALKTEENKIKVVALKITNNINVLIKDLFHIPPSYKSTVTLSWK PVQKVEIGQKRASEDTTSGSPPKKSSAGPKRDARQIYNPPSGKYSSNLGNFNYGMSSMLQAATTSMQGSHSQEFMMLCLILKAKWTLPRP -------------------------------------------------------------- >In-frame_ENST00000534600_ENST00000340334_TCGA-39-5016-01A_API5_chr11_43357544_+_FOLH1_chr11_49168497_length(transcript)=1933nt_BP=1623nt AGCGGAACCGGGCCCTGGGCTTGTCGCTCACCATGCCGACAGTAGAGGAGCTTTACCGCAATTATGGCATCCTGGCCGATGCCACGGAGC AAGTGGGCCAGCATAAAGATGCCTATCAAGTGATATTGGATGGTGTGAAAGGTGGTACTAAGGAAAAGCGATTAGCAGCTCAATTTATTC CGAAATTCTTTAAGCATTTTCCAGAATTGGCTGATTCTGCTATCAATGCACAGTTAGACCTCTGTGAGGATGAAGATGTATCTATTCGAC GTCAAGCAATTAAAGAACTGCCTCAATTTGCCACTGGAGAAAATCTTCCTCGAGTGGCAGATATACTAACGCAACTTTTGCAGACAGATG ACTCTGCAGAATTTAACCTAGTGAACAATGCCCTATTAAGTATATTTAAAATGGATGCAAAAGGGACTTTAGGTGGGTTGTTCAGCCAAA TACTTCAAGGAGAGGACATTGTTAGAGAACGAGCAATTAAATTCCTTTCTACAAAACTTAAGACTTTACCAGATGAAGTCTTAACAAAGG AAGTGGAAGAGCTTATACTAACTGAATCCAAAAAGGTCCTAGAAGATGTGACTGGTGAAGAATTTGTTCTATTTATGAAGATACTGTCTG GGTTAAAAAGCTTACAGACAGTGAGTGGAAGACAGCAACTTGTAGAGTTGGTGGCTGAACAGGCCGACCTAGAACAGACCTTCAATCCCT CGGATCCTGACTGTGTGGACAGGCTCTTACAGTGCACTCGGCAGGCAGTACCCCTCTTCTCTAAAAATGTCCATTCCACAAGGTTTGTGA CATATTTCTGTGAGCAGGTTCTCCCTAACCTCGGTACCTTGACTACCCCAGTGGAAGGTCTTGATATACAGTTGGAGGTATTGAAATTGT TGGCGGAGATGAGTTCATTTTGTGGTGACATGGAAAAACTAGAAACAAATTTAAGGAAACTATTTGATAAGTTATTGGAATACATGCCCC TCCCTCCAGAAGAGGCAGAAAATGGAGAGAATGCTGGTAATGAAGAACCCAAGCTACAGTTCAGTTATGTGGAATGTTTGTTGTACAGTT TTCACCAGTTGGGCCGAAAACTTCCAGATTTCTTAACAGCCAAACTGAATGCAGAAAAGCTCAAAGATTTCAAAATCAGGCTGCAGTACT TTGCACGGGGCCTGCAAGTTTATATCAGACAACTTCGCTTAGCTCTCCAGGGTAAAACGGGTGAGGCCTTAAAAACAGAAGAGAACAAGA TTAAAGTCGTTGCATTGAAAATAACAAACAATATCAATGTTTTAATCAAGGATCTCTTCCACATTCCTCCTTCTTATAAGAGCACAGTAA CACTATCCTGGAAACCTGTACAAAAGGTTGAGATTGGGTGAGCGTTTCCGTTTGGGTACAAGGAATATGAGAGATTAGGCAGAAATTGTG TTATACTTTATTTTAATTAGTAATTATATACAGTGTCATGGTTCTATCCAATGACTTTTCTGAATTAGCTTGGAGAACTAGGGCTGTTGA GGAAATGATTTATCCCATTCCTCTCTCATTCACCCTTCTGGGCTGACTGTATTGAACATGCAACATTAAACAGTAAGCACTTAAAGAAAA ATAGCATGTCATCTATGCTCCAAGCAGCCACAACAAGTATGCAGGGGAGTCATTCCCAGGAATTTATGATGCTCTGTTTGATATTGAAAG CAAAGTGGACCCTTCCAAGGCCTGGGGAGAAGTGAAGAGACAGATTTATGTTGCAGCCTTCACAGTGCAGGCAGCTGCAGAGACTTTGAG TGAAGTAGCCTAAGAGGATTCTTTAGAGAATCCGTATTGAATTTGTGTGGTATGTCACTCAGAAAGAATCGTAATGGGTATATTGATAAA >In-frame_ENST00000534600_ENST00000340334_TCGA-39-5016-01A_API5_chr11_43357544_+_FOLH1_chr11_49168497_length(amino acids)=458AA_start in transcript=14_stop in transcript=1390 MGLSLTMPTVEELYRNYGILADATEQVGQHKDAYQVILDGVKGGTKEKRLAAQFIPKFFKHFPELADSAINAQLDLCEDEDVSIRRQAIK ELPQFATGENLPRVADILTQLLQTDDSAEFNLVNNALLSIFKMDAKGTLGGLFSQILQGEDIVRERAIKFLSTKLKTLPDEVLTKEVEEL ILTESKKVLEDVTGEEFVLFMKILSGLKSLQTVSGRQQLVELVAEQADLEQTFNPSDPDCVDRLLQCTRQAVPLFSKNVHSTRFVTYFCE QVLPNLGTLTTPVEGLDIQLEVLKLLAEMSSFCGDMEKLETNLRKLFDKLLEYMPLPPEEAENGENAGNEEPKLQFSYVECLLYSFHQLG RKLPDFLTAKLNAEKLKDFKIRLQYFARGLQVYIRQLRLALQGKTGEALKTEENKIKVVALKITNNINVLIKDLFHIPPSYKSTVTLSWK -------------------------------------------------------------- >In-frame_ENST00000534600_ENST00000533034_TCGA-39-5016-01A_API5_chr11_43357544_+_FOLH1_chr11_49168497_length(transcript)=1818nt_BP=1623nt AGCGGAACCGGGCCCTGGGCTTGTCGCTCACCATGCCGACAGTAGAGGAGCTTTACCGCAATTATGGCATCCTGGCCGATGCCACGGAGC AAGTGGGCCAGCATAAAGATGCCTATCAAGTGATATTGGATGGTGTGAAAGGTGGTACTAAGGAAAAGCGATTAGCAGCTCAATTTATTC CGAAATTCTTTAAGCATTTTCCAGAATTGGCTGATTCTGCTATCAATGCACAGTTAGACCTCTGTGAGGATGAAGATGTATCTATTCGAC GTCAAGCAATTAAAGAACTGCCTCAATTTGCCACTGGAGAAAATCTTCCTCGAGTGGCAGATATACTAACGCAACTTTTGCAGACAGATG ACTCTGCAGAATTTAACCTAGTGAACAATGCCCTATTAAGTATATTTAAAATGGATGCAAAAGGGACTTTAGGTGGGTTGTTCAGCCAAA TACTTCAAGGAGAGGACATTGTTAGAGAACGAGCAATTAAATTCCTTTCTACAAAACTTAAGACTTTACCAGATGAAGTCTTAACAAAGG AAGTGGAAGAGCTTATACTAACTGAATCCAAAAAGGTCCTAGAAGATGTGACTGGTGAAGAATTTGTTCTATTTATGAAGATACTGTCTG GGTTAAAAAGCTTACAGACAGTGAGTGGAAGACAGCAACTTGTAGAGTTGGTGGCTGAACAGGCCGACCTAGAACAGACCTTCAATCCCT CGGATCCTGACTGTGTGGACAGGCTCTTACAGTGCACTCGGCAGGCAGTACCCCTCTTCTCTAAAAATGTCCATTCCACAAGGTTTGTGA CATATTTCTGTGAGCAGGTTCTCCCTAACCTCGGTACCTTGACTACCCCAGTGGAAGGTCTTGATATACAGTTGGAGGTATTGAAATTGT TGGCGGAGATGAGTTCATTTTGTGGTGACATGGAAAAACTAGAAACAAATTTAAGGAAACTATTTGATAAGTTATTGGAATACATGCCCC TCCCTCCAGAAGAGGCAGAAAATGGAGAGAATGCTGGTAATGAAGAACCCAAGCTACAGTTCAGTTATGTGGAATGTTTGTTGTACAGTT TTCACCAGTTGGGCCGAAAACTTCCAGATTTCTTAACAGCCAAACTGAATGCAGAAAAGCTCAAAGATTTCAAAATCAGGCTGCAGTACT TTGCACGGGGCCTGCAAGTTTATATCAGACAACTTCGCTTAGCTCTCCAGGGTAAAACGGGTGAGGCCTTAAAAACAGAAGAGAACAAGA TTAAAGTCGTTGCATTGAAAATAACAAACAATATCAATGTTTTAATCAAGGATCTCTTCCACATTCCTCCTTCTTATAAGAGCACAGTAA CACTATCCTGGAAACCTGTACAAAAGGTTGAGATTGGGTGAGCGTTTCCGTTTGGGTACAAGGAATATGAGAGATTAGGCAGAAATTGTG TTATACTTTATTTTAATTAGTAATTATATACAGTGTCATGGTTCTATCCAATGACTTTTCTGAATTAGCTTGGAGAACTAGGGCTGTTGA GGAAATGATTTATCCCATTCCTCTCTCATTCACCCTTCTGGGCTGACTGTATTGAACATGCAACATTAAACAGTAAGCACTTAAAGAAAA ATAGCATGTCATCTATGCTCCAAGCAGCCACAACAAGTATGCAGGGGAGTCATTCCCAGGAATTTATGATGCTCTGTTTGATATTGAAAG CAAAGTGGACCCTTCCAAGGCCTGGGGAGAAGTGAAGAGACAGATTTATGTTGCAGCCTTCACAGTGCAGGCAGCTGCAGAGACTTTGAG >In-frame_ENST00000534600_ENST00000533034_TCGA-39-5016-01A_API5_chr11_43357544_+_FOLH1_chr11_49168497_length(amino acids)=458AA_start in transcript=14_stop in transcript=1390 MGLSLTMPTVEELYRNYGILADATEQVGQHKDAYQVILDGVKGGTKEKRLAAQFIPKFFKHFPELADSAINAQLDLCEDEDVSIRRQAIK ELPQFATGENLPRVADILTQLLQTDDSAEFNLVNNALLSIFKMDAKGTLGGLFSQILQGEDIVRERAIKFLSTKLKTLPDEVLTKEVEEL ILTESKKVLEDVTGEEFVLFMKILSGLKSLQTVSGRQQLVELVAEQADLEQTFNPSDPDCVDRLLQCTRQAVPLFSKNVHSTRFVTYFCE QVLPNLGTLTTPVEGLDIQLEVLKLLAEMSSFCGDMEKLETNLRKLFDKLLEYMPLPPEEAENGENAGNEEPKLQFSYVECLLYSFHQLG RKLPDFLTAKLNAEKLKDFKIRLQYFARGLQVYIRQLRLALQGKTGEALKTEENKIKVVALKITNNINVLIKDLFHIPPSYKSTVTLSWK -------------------------------------------------------------- |
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Fusion Gene PPI Analysis for API5-FOLH1 |
Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in |
Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
Hgene | Hgene's interactors | Tgene | Tgene's interactors |
- Retained PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
- Lost PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
- Retained PPIs, but lost function due to frame-shift fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Related Drugs for API5-FOLH1 |
Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.8 2021-05-08) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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Related Diseases for API5-FOLH1 |
Diseases associated with fusion partners. (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Tgene | FOLH1 | C0033578 | Prostatic Neoplasms | 2 | CTD_human |
Tgene | FOLH1 | C0036341 | Schizophrenia | 2 | PSYGENET |
Tgene | FOLH1 | C0376358 | Malignant neoplasm of prostate | 2 | CTD_human |
Tgene | FOLH1 | C0011570 | Mental Depression | 1 | PSYGENET |
Tgene | FOLH1 | C0011581 | Depressive disorder | 1 | PSYGENET |