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Fusion Gene Summary | |
Fusion Gene ORF analysis | |
Fusion Genomic Features | |
Fusion Protein Features | |
Fusion Gene Sequence | |
Fusion Gene PPI analysis | |
Related Drugs | |
Related Diseases |
Fusion gene:MTUS1-PDCD4 (FusionGDB2 ID:55607) |
Fusion Gene Summary for MTUS1-PDCD4 |
Fusion gene summary |
Fusion gene information | Fusion gene name: MTUS1-PDCD4 | Fusion gene ID: 55607 | Hgene | Tgene | Gene symbol | MTUS1 | PDCD4 | Gene ID | 57509 | 27250 |
Gene name | microtubule associated scaffold protein 1 | programmed cell death 4 | |
Synonyms | ATBP|ATIP|ATIP3|ICIS|MP44|MTSG1 | H731 | |
Cytomap | 8p22 | 10q25.2 | |
Type of gene | protein-coding | protein-coding | |
Description | microtubule-associated tumor suppressor 1AT2 receptor-binding proteinAT2 receptor-interacting proteinAT2R binding proteinangiotensin-II type 2 receptor-interacting proteinerythroid differentiation-relatedmicrotubule associated tumor suppressor 1mit | programmed cell death protein 4neoplastic transformation inhibitor proteinnuclear antigen H731programmed cell death 4 (neoplastic transformation inhibitor)protein 197/15a | |
Modification date | 20200313 | 20200329 | |
UniProtAcc | Q9ULD2 | . | |
Ensembl transtripts involved in fusion gene | ENST00000544260, ENST00000381869, ENST00000381861, ENST00000262102, ENST00000519263, ENST00000400046, ENST00000297488, ENST00000518713, ENST00000381862, | ENST00000280154, ENST00000393104, ENST00000481353, | |
Fusion gene scores | * DoF score | 12 X 13 X 5=780 | 5 X 6 X 5=150 |
# samples | 15 | 6 | |
** MAII score | log2(15/780*10)=-2.37851162325373 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(6/150*10)=-1.32192809488736 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
Context | PubMed: MTUS1 [Title/Abstract] AND PDCD4 [Title/Abstract] AND fusion [Title/Abstract] | ||
Most frequent breakpoint | MTUS1(17532695)-PDCD4(112640991), # samples:1 | ||
Anticipated loss of major functional domain due to fusion event. | MTUS1-PDCD4 seems lost the major protein functional domain in Hgene partner, which is a tumor suppressor due to the frame-shifted ORF. MTUS1-PDCD4 seems lost the major protein functional domain in Tgene partner, which is a tumor suppressor due to the frame-shifted ORF. |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
Partner | Gene | GO ID | GO term | PubMed ID |
Tgene | PDCD4 | GO:0007569 | cell aging | 12054647 |
Tgene | PDCD4 | GO:0030509 | BMP signaling pathway | 18548003 |
Tgene | PDCD4 | GO:0045892 | negative regulation of transcription, DNA-templated | 16357133 |
Tgene | PDCD4 | GO:1905064 | negative regulation of vascular smooth muscle cell differentiation | 18548003 |
Fusion gene breakpoints across MTUS1 (5'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
Fusion gene breakpoints across PDCD4 (3'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Source | Disease | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
ChimerDB4 | KIRC | TCGA-A3-3362-01A | MTUS1 | chr8 | 17532695 | - | PDCD4 | chr10 | 112640991 | + |
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Fusion Gene ORF analysis for MTUS1-PDCD4 |
Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
In-frame | ENST00000544260 | ENST00000280154 | MTUS1 | chr8 | 17532695 | - | PDCD4 | chr10 | 112640991 | + |
In-frame | ENST00000544260 | ENST00000393104 | MTUS1 | chr8 | 17532695 | - | PDCD4 | chr10 | 112640991 | + |
5CDS-intron | ENST00000544260 | ENST00000481353 | MTUS1 | chr8 | 17532695 | - | PDCD4 | chr10 | 112640991 | + |
Frame-shift | ENST00000381869 | ENST00000280154 | MTUS1 | chr8 | 17532695 | - | PDCD4 | chr10 | 112640991 | + |
Frame-shift | ENST00000381869 | ENST00000393104 | MTUS1 | chr8 | 17532695 | - | PDCD4 | chr10 | 112640991 | + |
5CDS-intron | ENST00000381869 | ENST00000481353 | MTUS1 | chr8 | 17532695 | - | PDCD4 | chr10 | 112640991 | + |
In-frame | ENST00000381861 | ENST00000280154 | MTUS1 | chr8 | 17532695 | - | PDCD4 | chr10 | 112640991 | + |
In-frame | ENST00000381861 | ENST00000393104 | MTUS1 | chr8 | 17532695 | - | PDCD4 | chr10 | 112640991 | + |
5CDS-intron | ENST00000381861 | ENST00000481353 | MTUS1 | chr8 | 17532695 | - | PDCD4 | chr10 | 112640991 | + |
Frame-shift | ENST00000262102 | ENST00000280154 | MTUS1 | chr8 | 17532695 | - | PDCD4 | chr10 | 112640991 | + |
Frame-shift | ENST00000262102 | ENST00000393104 | MTUS1 | chr8 | 17532695 | - | PDCD4 | chr10 | 112640991 | + |
5CDS-intron | ENST00000262102 | ENST00000481353 | MTUS1 | chr8 | 17532695 | - | PDCD4 | chr10 | 112640991 | + |
In-frame | ENST00000519263 | ENST00000280154 | MTUS1 | chr8 | 17532695 | - | PDCD4 | chr10 | 112640991 | + |
In-frame | ENST00000519263 | ENST00000393104 | MTUS1 | chr8 | 17532695 | - | PDCD4 | chr10 | 112640991 | + |
5CDS-intron | ENST00000519263 | ENST00000481353 | MTUS1 | chr8 | 17532695 | - | PDCD4 | chr10 | 112640991 | + |
In-frame | ENST00000400046 | ENST00000280154 | MTUS1 | chr8 | 17532695 | - | PDCD4 | chr10 | 112640991 | + |
In-frame | ENST00000400046 | ENST00000393104 | MTUS1 | chr8 | 17532695 | - | PDCD4 | chr10 | 112640991 | + |
5CDS-intron | ENST00000400046 | ENST00000481353 | MTUS1 | chr8 | 17532695 | - | PDCD4 | chr10 | 112640991 | + |
In-frame | ENST00000297488 | ENST00000280154 | MTUS1 | chr8 | 17532695 | - | PDCD4 | chr10 | 112640991 | + |
In-frame | ENST00000297488 | ENST00000393104 | MTUS1 | chr8 | 17532695 | - | PDCD4 | chr10 | 112640991 | + |
5CDS-intron | ENST00000297488 | ENST00000481353 | MTUS1 | chr8 | 17532695 | - | PDCD4 | chr10 | 112640991 | + |
5UTR-3CDS | ENST00000518713 | ENST00000280154 | MTUS1 | chr8 | 17532695 | - | PDCD4 | chr10 | 112640991 | + |
5UTR-3CDS | ENST00000518713 | ENST00000393104 | MTUS1 | chr8 | 17532695 | - | PDCD4 | chr10 | 112640991 | + |
5UTR-intron | ENST00000518713 | ENST00000481353 | MTUS1 | chr8 | 17532695 | - | PDCD4 | chr10 | 112640991 | + |
intron-3CDS | ENST00000381862 | ENST00000280154 | MTUS1 | chr8 | 17532695 | - | PDCD4 | chr10 | 112640991 | + |
intron-3CDS | ENST00000381862 | ENST00000393104 | MTUS1 | chr8 | 17532695 | - | PDCD4 | chr10 | 112640991 | + |
intron-intron | ENST00000381862 | ENST00000481353 | MTUS1 | chr8 | 17532695 | - | PDCD4 | chr10 | 112640991 | + |
ORFfinder result based on the fusion transcript sequence of in-frame fusion genes. |
Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | Seq length (transcript) | BP loci (transcript) | Predicted start (transcript) | Predicted stop (transcript) | Seq length (amino acids) |
ENST00000544260 | MTUS1 | chr8 | 17532695 | - | ENST00000280154 | PDCD4 | chr10 | 112640991 | + | 3896 | 611 | 235 | 1977 | 580 |
ENST00000544260 | MTUS1 | chr8 | 17532695 | - | ENST00000393104 | PDCD4 | chr10 | 112640991 | + | 3895 | 611 | 235 | 1977 | 580 |
ENST00000381861 | MTUS1 | chr8 | 17532695 | - | ENST00000280154 | PDCD4 | chr10 | 112640991 | + | 4251 | 966 | 320 | 2332 | 670 |
ENST00000381861 | MTUS1 | chr8 | 17532695 | - | ENST00000393104 | PDCD4 | chr10 | 112640991 | + | 4250 | 966 | 320 | 2332 | 670 |
ENST00000519263 | MTUS1 | chr8 | 17532695 | - | ENST00000280154 | PDCD4 | chr10 | 112640991 | + | 6202 | 2917 | 174 | 4283 | 1369 |
ENST00000519263 | MTUS1 | chr8 | 17532695 | - | ENST00000393104 | PDCD4 | chr10 | 112640991 | + | 6201 | 2917 | 174 | 4283 | 1369 |
ENST00000400046 | MTUS1 | chr8 | 17532695 | - | ENST00000280154 | PDCD4 | chr10 | 112640991 | + | 3406 | 121 | 0 | 1487 | 495 |
ENST00000400046 | MTUS1 | chr8 | 17532695 | - | ENST00000393104 | PDCD4 | chr10 | 112640991 | + | 3405 | 121 | 0 | 1487 | 495 |
ENST00000297488 | MTUS1 | chr8 | 17532695 | - | ENST00000280154 | PDCD4 | chr10 | 112640991 | + | 3981 | 696 | 293 | 2062 | 589 |
ENST00000297488 | MTUS1 | chr8 | 17532695 | - | ENST00000393104 | PDCD4 | chr10 | 112640991 | + | 3980 | 696 | 293 | 2062 | 589 |
DeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated. |
Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | No-coding score | Coding score |
ENST00000544260 | ENST00000280154 | MTUS1 | chr8 | 17532695 | - | PDCD4 | chr10 | 112640991 | + | 0.000191539 | 0.9998085 |
ENST00000544260 | ENST00000393104 | MTUS1 | chr8 | 17532695 | - | PDCD4 | chr10 | 112640991 | + | 0.000191858 | 0.99980813 |
ENST00000381861 | ENST00000280154 | MTUS1 | chr8 | 17532695 | - | PDCD4 | chr10 | 112640991 | + | 0.000177465 | 0.99982256 |
ENST00000381861 | ENST00000393104 | MTUS1 | chr8 | 17532695 | - | PDCD4 | chr10 | 112640991 | + | 0.000178095 | 0.99982196 |
ENST00000519263 | ENST00000280154 | MTUS1 | chr8 | 17532695 | - | PDCD4 | chr10 | 112640991 | + | 8.39E-05 | 0.9999161 |
ENST00000519263 | ENST00000393104 | MTUS1 | chr8 | 17532695 | - | PDCD4 | chr10 | 112640991 | + | 8.40E-05 | 0.99991596 |
ENST00000400046 | ENST00000280154 | MTUS1 | chr8 | 17532695 | - | PDCD4 | chr10 | 112640991 | + | 5.06E-05 | 0.99994934 |
ENST00000400046 | ENST00000393104 | MTUS1 | chr8 | 17532695 | - | PDCD4 | chr10 | 112640991 | + | 5.07E-05 | 0.99994934 |
ENST00000297488 | ENST00000280154 | MTUS1 | chr8 | 17532695 | - | PDCD4 | chr10 | 112640991 | + | 0.000285589 | 0.99971443 |
ENST00000297488 | ENST00000393104 | MTUS1 | chr8 | 17532695 | - | PDCD4 | chr10 | 112640991 | + | 0.000285883 | 0.9997141 |
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Fusion Genomic Features for MTUS1-PDCD4 |
FusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints. |
Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | 1-p | p (fusion gene breakpoint) |
Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page. |
Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page. |
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Fusion Protein Features for MTUS1-PDCD4 |
Go to FGviewer for the breakpoints of chr8:17532695-chr10:112640991 - FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels. |
Main function of each fusion partner protein. (from UniProt) |
Hgene | Tgene |
MTUS1 | . |
FUNCTION: Cooperates with AGTR2 to inhibit ERK2 activation and cell proliferation. May be required for AGTR2 cell surface expression. Together with PTPN6, induces UBE2V2 expression upon angiotensin-II stimulation. Isoform 1 inhibits breast cancer cell proliferation, delays the progression of mitosis by prolonging metaphase and reduces tumor growth. {ECO:0000269|PubMed:12692079, ECO:0000269|PubMed:19794912}. | FUNCTION: Might normally function as a transcriptional repressor. EWS-fusion-proteins (EFPS) may play a role in the tumorigenic process. They may disturb gene expression by mimicking, or interfering with the normal function of CTD-POLII within the transcription initiation complex. They may also contribute to an aberrant activation of the fusion protein target genes. |
Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Tgene | PDCD4 | chr8:17532695 | chr10:112640991 | ENST00000280154 | 1 | 12 | 163_284 | 14.333333333333334 | 470.0 | Domain | MI 1 | |
Tgene | PDCD4 | chr8:17532695 | chr10:112640991 | ENST00000280154 | 1 | 12 | 326_449 | 14.333333333333334 | 470.0 | Domain | MI 2 | |
Tgene | PDCD4 | chr8:17532695 | chr10:112640991 | ENST00000393104 | 2 | 13 | 163_284 | 3.3333333333333335 | 459.0 | Domain | MI 1 | |
Tgene | PDCD4 | chr8:17532695 | chr10:112640991 | ENST00000393104 | 2 | 13 | 326_449 | 3.3333333333333335 | 459.0 | Domain | MI 2 | |
Tgene | PDCD4 | chr8:17532695 | chr10:112640991 | ENST00000280154 | 1 | 12 | 241_250 | 14.333333333333334 | 470.0 | Motif | Nuclear localization signal | |
Tgene | PDCD4 | chr8:17532695 | chr10:112640991 | ENST00000280154 | 1 | 12 | 58_64 | 14.333333333333334 | 470.0 | Motif | Nuclear localization signal | |
Tgene | PDCD4 | chr8:17532695 | chr10:112640991 | ENST00000280154 | 1 | 12 | 70_76 | 14.333333333333334 | 470.0 | Motif | Note=Phosphodegron | |
Tgene | PDCD4 | chr8:17532695 | chr10:112640991 | ENST00000393104 | 2 | 13 | 241_250 | 3.3333333333333335 | 459.0 | Motif | Nuclear localization signal | |
Tgene | PDCD4 | chr8:17532695 | chr10:112640991 | ENST00000393104 | 2 | 13 | 58_64 | 3.3333333333333335 | 459.0 | Motif | Nuclear localization signal | |
Tgene | PDCD4 | chr8:17532695 | chr10:112640991 | ENST00000393104 | 2 | 13 | 70_76 | 3.3333333333333335 | 459.0 | Motif | Note=Phosphodegron |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | MTUS1 | chr8:17532695 | chr10:112640991 | ENST00000262102 | - | 8 | 15 | 940_1231 | 968.3333333333334 | 1271.0 | Coiled coil | Ontology_term=ECO:0000255 |
Hgene | MTUS1 | chr8:17532695 | chr10:112640991 | ENST00000297488 | - | 3 | 10 | 940_1231 | 134.33333333333334 | 437.0 | Coiled coil | Ontology_term=ECO:0000255 |
Hgene | MTUS1 | chr8:17532695 | chr10:112640991 | ENST00000381861 | - | 5 | 12 | 940_1231 | 215.33333333333334 | 518.0 | Coiled coil | Ontology_term=ECO:0000255 |
Hgene | MTUS1 | chr8:17532695 | chr10:112640991 | ENST00000381862 | - | 1 | 4 | 940_1231 | 0 | 771.0 | Coiled coil | Ontology_term=ECO:0000255 |
Hgene | MTUS1 | chr8:17532695 | chr10:112640991 | ENST00000381869 | - | 7 | 14 | 940_1231 | 914.3333333333334 | 1217.0 | Coiled coil | Ontology_term=ECO:0000255 |
Hgene | MTUS1 | chr8:17532695 | chr10:112640991 | ENST00000400046 | - | 2 | 9 | 940_1231 | 40.333333333333336 | 343.0 | Coiled coil | Ontology_term=ECO:0000255 |
Hgene | MTUS1 | chr8:17532695 | chr10:112640991 | ENST00000519263 | - | 6 | 13 | 940_1231 | 914.3333333333334 | 1217.0 | Coiled coil | Ontology_term=ECO:0000255 |
Hgene | MTUS1 | chr8:17532695 | chr10:112640991 | ENST00000544260 | - | 5 | 12 | 940_1231 | 113.33333333333333 | 416.0 | Coiled coil | Ontology_term=ECO:0000255 |
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Fusion Gene Sequence for MTUS1-PDCD4 |
For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones. |
>In-frame_ENST00000544260_ENST00000280154_TCGA-A3-3362-01A_MTUS1_chr8_17532695_-_PDCD4_chr10_112640991_length(transcript)=3896nt_BP=611nt TATGAGAGTAAGTAGCTGCATACCCTGGCACTTCAGGAATACTGGGATATGTGACTTGCAATTAAACAGGATTGTTACCAGCTTTACTGT TGGAATTTTGAAGGTGTGGCACAAAATCAGGCTTGCATGTAAGAGGGAACTCTGAATTTGAAAAGCTGGTAATGCCGCTGTCATCAAATA TGAGGAGAAACCTCCAAAACCAGCATTTCAGAATGGTTCCTCAGGATCCTTTTATTTGAAGCCTTTGGTATCCAGGGCTCATGTTCACTT GATGAAAACTCCTCCAAAAGGTCCTTCGAGAAAAAATTTATTTACAGCTCTTAATGCAGTTGAAAAGAGCAGGCAAAAGAATCCTCGAAG CTTATGTATCCAGCCACAGACAGCTCCCGATGCGCTGCCCCCTGAGAAAACACTTGAATTGACGCAATATAAAACAAAATGTGAAAACCA AAGTGGATTTATCCTGCAGCTCAAGCAGCTTCTTGCCTGTGGTAATACCAAGTTTGAGGCATTGACAGTTGTGATTCAGCACCTGCTGTC TGAGCGGGAGGAAGCACTGAAACAACACAAAACCCTATCTCAAGAACTTGTTAACCTCCGGGGAGAGCTAGATCCTGATAACTTAAGTGA CTCTCTCTTTTCCGGTGATGAAGAAAATGCTGGGACTGAGGAAATAAAGAATGAAATAAATGGAAATTGGATTTCAGCATCCTCCATTAA CGAAGCTAGAATTAATGCCAAGGCAAAAAGGCGACTAAGGAAAAACTCATCCCGGGACTCTGGCAGAGGCGATTCGGTCAGCGACAGTGG GAGTGACGCCCTTAGAAGTGGATTAACTGTGCCAACCAGTCCAAAGGGAAGGTTGCTGGATAGGCGATCCAGATCTGGGAAAGGAAGGGG ACTACCAAAGAAAGGTGGTGCAGGAGGCAAAGGTGTCTGGGGTACACCTGGACAGGTGTATGATGTGGAGGAGGTGGATGTGAAAGATCC TAACTATGATGATGACCAGGAGAACTGTGTTTATGAAACTGTAGTTTTGCCTTTGGATGAAAGGGCATTTGAGAAGACTTTAACACCAAT CATACAGGAATATTTTGAGCATGGAGATACTAATGAAGTTGCGGAAATGTTAAGAGATTTAAATCTTGGTGAAATGAAAAGTGGAGTACC AGTGTTGGCAGTATCCTTAGCATTGGAGGGGAAGGCTAGTCATAGAGAGATGACATCTAAGCTTCTTTCTGACCTTTGTGGGACAGTAAT GAGCACAACTGATGTGGAAAAATCATTTGATAAATTGTTGAAAGATCTACCTGAATTAGCACTGGATACTCCTAGAGCACCACAGTTGGT GGGCCAGTTTATTGCTAGAGCTGTTGGAGATGGAATTTTATGTAATACCTATATTGATAGTTACAAAGGAACTGTAGATTGTGTGCAGGC TAGAGCTGCTCTGGATAAGGCTACCGTGCTTCTGAGTATGTCTAAAGGTGGAAAGCGTAAAGATAGTGTGTGGGGCTCTGGAGGTGGGCA GCAATCTGTCAATCACCTTGTTAAAGAGATTGATATGCTGCTGAAAGAATATTTACTCTCTGGAGACATATCTGAAGCTGAACATTGCCT TAAGGAACTGGAAGTACCTCATTTTCACCATGAGCTTGTATATGAAGCTATTATAATGGTTTTAGAGTCAACTGGAGAAAGTACATTTAA GATGATTTTGGATTTATTAAAGTCCCTTTGGAAGTCTTCTACCATTACTGTAGACCAAATGAAAAGAGGTTATGAGAGAATTTACAATGA AATTCCGGACATTAATCTGGATGTCCCACATTCATACTCTGTGCTGGAGCGGTTTGTAGAAGAATGTTTTCAGGCTGGAATAATTTCCAA ACAACTCAGAGATCTTTGTCCTTCAAGGGGCAGAAAGCGTTTTGTAAGCGAAGGAGATGGAGGTCGTCTTAAACCAGAGAGCTACTGAAT ATAAGAACTCTTGCAGTCTTAGATGTTATAAAAATATATATCTGAATTGTAAGAGTTGTTAGCACAAGTTTTTTTTTTTTTTTTTTTTAA GCACTTGTTTTGGGTACAAGGCATTTCTGACATTTTATAAACCTACATTTAAGGGGAATTTTTAAAGGAAATGTTTTTTCTTTTTTTTTT GTTTTTCGAGGGGGCAAGGAGGGACAGAAAAGTAACCTCTTCTTAAGTGGAATATTCTAATAAGCTACCTTTTGTAAGTGCCATGTTTAT TATCTAATCATTCCAAGTTTTGCATTGATGTCTGACTGCCACTCCTTTCTTTCAAGGACAGTGTTTTTTGTAGTAAAATCACTGGTTTAT ACAAAGCTTTATTTAGGGGGTAAAGTTAAGCTGCTAAAACCCCATGTTGGCTGCTGCTGTTGAGATACTGTGCTTTGGGAGTAAAAAAAG AAAGTTATTTCTTTGTCTTAAAGAATTTTTAAAAAATTAGTCATGAGACTTATTCATCTTTCCAGGGAACATACTGATTGGTCTTAAAAG ACTAGACAGTTAAGTAAAAGGTGGCTGGAACATCTATTTTTCTACAAAACTGGAAAAATGAACCTGGTTCTAGAAGAATGTACACCAAAA TAAAACATGTGAAGCAGTATTGATTCTTTATTGGGAGTACATTTTTTTAGGTCTCTTAAACTTTAATTTCACACAGTAAATTTTGAATCT CATAAGGAAGCATATTTGAACCTAGTCAATTTAATCTTAGTGTTCCCTTGAAAACTTTTTTTCCCTACAAAATTTTAAGTGAAAAATACA ATAGTAAATTAAGATTACACTGGGGAAAAAAATGCAGGTATCACTTTACTCCATTGTTATCTGACCTAGAGCTTAATTAAGTTTTAGAAA TATGTAATACCTTCCATCATTCCATCATCCTTAAATTCTGTTACCAAATAATGGCTAATGTTACAAAAAGTTATACTCCAGAGACCCAAA GCTTGACATTTACCTAATGTATGAGAAAATATTACCAATTAACAATAAAGAATGATCATATTTTTAACCTCTTTTACATAGCCTAATAAC TCAGCAAGGCCTCAACGTCTGTGCTAATTTAAACTGCCAAATATTGACTGCAGCAAACAAGAATTATATTCAGAATTTATGAGGGTACTG TTAGGAGTATACTGCTTACAGGTTTAGATATAGTCTGTTAGAATTAAAACCAAGTTTAGTGTTCATATTTACCTCATGGGCTTTATCAAG CCCATATTACCTCAGCTTATATATAGTTACCATTTTTAGGTTTTTAATTGTTTGACACTTGGATGATAAATGCAGTCATTTTATTCTCAA GTGCTTAAAATTAATGTAATTAAAAGCTTAGCTGACTACAGAATAGGTGAGGGTTTCTTAAAAATGAGATTTAAGGGCTGGGCACGGTGG CTCATGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGCGGATCACTTGAGGTTGGGAGTTCATGACCAGCTTGACCAACATGAAGA AACCCTGTCTCTATTAAAAATACAAAAGTAGCCAGGCATGGTGGCGCATGCGTGTAATCCCAGCTACTTGGGAGGCTGAGGCAGGAGAAT TGCTTGAACCTGGGAGGCAGAGGTTGCAGTGAGTCGAGATGGTGCCATTGCTCTCGTTTGGGCAACAAGAGTGAAACTCTTGTCTCAAAA AAAAAAAAAAATGAGGTTTAAGACAGTTTTGTCATTACTGGTGGGATCTGGTCACACAAGATAGCATTAAACGTGACATGGCACATAAAA TTGGTTAAAAAATTTTGTTTTTTAATTACGTAATGTAAAAGCCCAACAAACACTTTATGCAAGATTGGAATGTATCTTCAAATTCAGATT >In-frame_ENST00000544260_ENST00000280154_TCGA-A3-3362-01A_MTUS1_chr8_17532695_-_PDCD4_chr10_112640991_length(amino acids)=580AA_start in transcript=235_stop in transcript=1977 MKPLVSRAHVHLMKTPPKGPSRKNLFTALNAVEKSRQKNPRSLCIQPQTAPDALPPEKTLELTQYKTKCENQSGFILQLKQLLACGNTKF EALTVVIQHLLSEREEALKQHKTLSQELVNLRGELDPDNLSDSLFSGDEENAGTEEIKNEINGNWISASSINEARINAKAKRRLRKNSSR DSGRGDSVSDSGSDALRSGLTVPTSPKGRLLDRRSRSGKGRGLPKKGGAGGKGVWGTPGQVYDVEEVDVKDPNYDDDQENCVYETVVLPL DERAFEKTLTPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCGTVMSTTDVEKSFDKLLKDLPE LALDTPRAPQLVGQFIARAVGDGILCNTYIDSYKGTVDCVQARAALDKATVLLSMSKGGKRKDSVWGSGGGQQSVNHLVKEIDMLLKEYL LSGDISEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQMKRGYERIYNEIPDINLDVPHSYSVLERF -------------------------------------------------------------- >In-frame_ENST00000544260_ENST00000393104_TCGA-A3-3362-01A_MTUS1_chr8_17532695_-_PDCD4_chr10_112640991_length(transcript)=3895nt_BP=611nt TATGAGAGTAAGTAGCTGCATACCCTGGCACTTCAGGAATACTGGGATATGTGACTTGCAATTAAACAGGATTGTTACCAGCTTTACTGT TGGAATTTTGAAGGTGTGGCACAAAATCAGGCTTGCATGTAAGAGGGAACTCTGAATTTGAAAAGCTGGTAATGCCGCTGTCATCAAATA TGAGGAGAAACCTCCAAAACCAGCATTTCAGAATGGTTCCTCAGGATCCTTTTATTTGAAGCCTTTGGTATCCAGGGCTCATGTTCACTT GATGAAAACTCCTCCAAAAGGTCCTTCGAGAAAAAATTTATTTACAGCTCTTAATGCAGTTGAAAAGAGCAGGCAAAAGAATCCTCGAAG CTTATGTATCCAGCCACAGACAGCTCCCGATGCGCTGCCCCCTGAGAAAACACTTGAATTGACGCAATATAAAACAAAATGTGAAAACCA AAGTGGATTTATCCTGCAGCTCAAGCAGCTTCTTGCCTGTGGTAATACCAAGTTTGAGGCATTGACAGTTGTGATTCAGCACCTGCTGTC TGAGCGGGAGGAAGCACTGAAACAACACAAAACCCTATCTCAAGAACTTGTTAACCTCCGGGGAGAGCTAGATCCTGATAACTTAAGTGA CTCTCTCTTTTCCGGTGATGAAGAAAATGCTGGGACTGAGGAAATAAAGAATGAAATAAATGGAAATTGGATTTCAGCATCCTCCATTAA CGAAGCTAGAATTAATGCCAAGGCAAAAAGGCGACTAAGGAAAAACTCATCCCGGGACTCTGGCAGAGGCGATTCGGTCAGCGACAGTGG GAGTGACGCCCTTAGAAGTGGATTAACTGTGCCAACCAGTCCAAAGGGAAGGTTGCTGGATAGGCGATCCAGATCTGGGAAAGGAAGGGG ACTACCAAAGAAAGGTGGTGCAGGAGGCAAAGGTGTCTGGGGTACACCTGGACAGGTGTATGATGTGGAGGAGGTGGATGTGAAAGATCC TAACTATGATGATGACCAGGAGAACTGTGTTTATGAAACTGTAGTTTTGCCTTTGGATGAAAGGGCATTTGAGAAGACTTTAACACCAAT CATACAGGAATATTTTGAGCATGGAGATACTAATGAAGTTGCGGAAATGTTAAGAGATTTAAATCTTGGTGAAATGAAAAGTGGAGTACC AGTGTTGGCAGTATCCTTAGCATTGGAGGGGAAGGCTAGTCATAGAGAGATGACATCTAAGCTTCTTTCTGACCTTTGTGGGACAGTAAT GAGCACAACTGATGTGGAAAAATCATTTGATAAATTGTTGAAAGATCTACCTGAATTAGCACTGGATACTCCTAGAGCACCACAGTTGGT GGGCCAGTTTATTGCTAGAGCTGTTGGAGATGGAATTTTATGTAATACCTATATTGATAGTTACAAAGGAACTGTAGATTGTGTGCAGGC TAGAGCTGCTCTGGATAAGGCTACCGTGCTTCTGAGTATGTCTAAAGGTGGAAAGCGTAAAGATAGTGTGTGGGGCTCTGGAGGTGGGCA GCAATCTGTCAATCACCTTGTTAAAGAGATTGATATGCTGCTGAAAGAATATTTACTCTCTGGAGACATATCTGAAGCTGAACATTGCCT TAAGGAACTGGAAGTACCTCATTTTCACCATGAGCTTGTATATGAAGCTATTATAATGGTTTTAGAGTCAACTGGAGAAAGTACATTTAA GATGATTTTGGATTTATTAAAGTCCCTTTGGAAGTCTTCTACCATTACTGTAGACCAAATGAAAAGAGGTTATGAGAGAATTTACAATGA AATTCCGGACATTAATCTGGATGTCCCACATTCATACTCTGTGCTGGAGCGGTTTGTAGAAGAATGTTTTCAGGCTGGAATAATTTCCAA ACAACTCAGAGATCTTTGTCCTTCAAGGGGCAGAAAGCGTTTTGTAAGCGAAGGAGATGGAGGTCGTCTTAAACCAGAGAGCTACTGAAT ATAAGAACTCTTGCAGTCTTAGATGTTATAAAAATATATATCTGAATTGTAAGAGTTGTTAGCACAAGTTTTTTTTTTTTTTTTTTTTAA GCACTTGTTTTGGGTACAAGGCATTTCTGACATTTTATAAACCTACATTTAAGGGGAATTTTTAAAGGAAATGTTTTTTCTTTTTTTTTT GTTTTTCGAGGGGGCAAGGAGGGACAGAAAAGTAACCTCTTCTTAAGTGGAATATTCTAATAAGCTACCTTTTGTAAGTGCCATGTTTAT TATCTAATCATTCCAAGTTTTGCATTGATGTCTGACTGCCACTCCTTTCTTTCAAGGACAGTGTTTTTTGTAGTAAAATCACTGGTTTAT ACAAAGCTTTATTTAGGGGGTAAAGTTAAGCTGCTAAAACCCCATGTTGGCTGCTGCTGTTGAGATACTGTGCTTTGGGAGTAAAAAAAG AAAGTTATTTCTTTGTCTTAAAGAATTTTTAAAAAATTAGTCATGAGACTTATTCATCTTTCCAGGGAACATACTGATTGGTCTTAAAAG ACTAGACAGTTAAGTAAAAGGTGGCTGGAACATCTATTTTTCTACAAAACTGGAAAAATGAACCTGGTTCTAGAAGAATGTACACCAAAA TAAAACATGTGAAGCAGTATTGATTCTTTATTGGGAGTACATTTTTTTAGGTCTCTTAAACTTTAATTTCACACAGTAAATTTTGAATCT CATAAGGAAGCATATTTGAACCTAGTCAATTTAATCTTAGTGTTCCCTTGAAAACTTTTTTTCCCTACAAAATTTTAAGTGAAAAATACA ATAGTAAATTAAGATTACACTGGGGAAAAAAATGCAGGTATCACTTTACTCCATTGTTATCTGACCTAGAGCTTAATTAAGTTTTAGAAA TATGTAATACCTTCCATCATTCCATCATCCTTAAATTCTGTTACCAAATAATGGCTAATGTTACAAAAAGTTATACTCCAGAGACCCAAA GCTTGACATTTACCTAATGTATGAGAAAATATTACCAATTAACAATAAAGAATGATCATATTTTTAACCTCTTTTACATAGCCTAATAAC TCAGCAAGGCCTCAACGTCTGTGCTAATTTAAACTGCCAAATATTGACTGCAGCAAACAAGAATTATATTCAGAATTTATGAGGGTACTG TTAGGAGTATACTGCTTACAGGTTTAGATATAGTCTGTTAGAATTAAAACCAAGTTTAGTGTTCATATTTACCTCATGGGCTTTATCAAG CCCATATTACCTCAGCTTATATATAGTTACCATTTTTAGGTTTTTAATTGTTTGACACTTGGATGATAAATGCAGTCATTTTATTCTCAA GTGCTTAAAATTAATGTAATTAAAAGCTTAGCTGACTACAGAATAGGTGAGGGTTTCTTAAAAATGAGATTTAAGGGCTGGGCACGGTGG CTCATGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGCGGATCACTTGAGGTTGGGAGTTCATGACCAGCTTGACCAACATGAAGA AACCCTGTCTCTATTAAAAATACAAAAGTAGCCAGGCATGGTGGCGCATGCGTGTAATCCCAGCTACTTGGGAGGCTGAGGCAGGAGAAT TGCTTGAACCTGGGAGGCAGAGGTTGCAGTGAGTCGAGATGGTGCCATTGCTCTCGTTTGGGCAACAAGAGTGAAACTCTTGTCTCAAAA AAAAAAAAAAATGAGGTTTAAGACAGTTTTGTCATTACTGGTGGGATCTGGTCACACAAGATAGCATTAAACGTGACATGGCACATAAAA TTGGTTAAAAAATTTTGTTTTTTAATTACGTAATGTAAAAGCCCAACAAACACTTTATGCAAGATTGGAATGTATCTTCAAATTCAGATT >In-frame_ENST00000544260_ENST00000393104_TCGA-A3-3362-01A_MTUS1_chr8_17532695_-_PDCD4_chr10_112640991_length(amino acids)=580AA_start in transcript=235_stop in transcript=1977 MKPLVSRAHVHLMKTPPKGPSRKNLFTALNAVEKSRQKNPRSLCIQPQTAPDALPPEKTLELTQYKTKCENQSGFILQLKQLLACGNTKF EALTVVIQHLLSEREEALKQHKTLSQELVNLRGELDPDNLSDSLFSGDEENAGTEEIKNEINGNWISASSINEARINAKAKRRLRKNSSR DSGRGDSVSDSGSDALRSGLTVPTSPKGRLLDRRSRSGKGRGLPKKGGAGGKGVWGTPGQVYDVEEVDVKDPNYDDDQENCVYETVVLPL DERAFEKTLTPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCGTVMSTTDVEKSFDKLLKDLPE LALDTPRAPQLVGQFIARAVGDGILCNTYIDSYKGTVDCVQARAALDKATVLLSMSKGGKRKDSVWGSGGGQQSVNHLVKEIDMLLKEYL LSGDISEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQMKRGYERIYNEIPDINLDVPHSYSVLERF -------------------------------------------------------------- >In-frame_ENST00000381861_ENST00000280154_TCGA-A3-3362-01A_MTUS1_chr8_17532695_-_PDCD4_chr10_112640991_length(transcript)=4251nt_BP=966nt AGTACTGTGTCTGATGCTCCTAAGGAGGCTGTAAAGTGCTTTTGTCCATTCCTTTTTGTCTTTTAACAAAGGGGTTTACCATACACCCAC AGAGCCTGTCTAGTGGCGATGTGTTCCTGTTGCGGATTAAGCATTCAAATCAGTGAGTCTCTTTCTTAGTTTGATTTGCTAGCTGGTTTA ATCTGTTTTGTGTAGTGCCTTGGAGCTTACGCATTTTTTTTTTTTTCCCTCCATTCGAATTCACTAAGAGCAAGCATGAGGGATATGAGA GTGAACATGGCTGCAGTTTTTCCTGCTTAAGCTTGCTTTGATCCTTTTAAATGACTGTACCAGGAGGATTTCGCAGTTGTACAGAAACTG ATATTTCTTCAAAAATCTTTATCAATTCTACACTCACCCCACCGGCTGGTTCAGAGAGGCACTATGATGCTACCTTATTGACACTGCTGG TCGTGGGATCGTACAGCCTTTGTATAATTCCTTTGTTAGCCACGTTTACTGGGAAAAAAACTGGTAATGCCGCTGTCATCAAATATGAGG AGAAACCTCCAAAACCAGCATTTCAGAATGGTTCCTCAGGATCCTTTTATTTGAAGCCTTTGGTATCCAGGGCTCATGTTCACTTGATGA AAACTCCTCCAAAAGGTCCTTCGAGAAAAAATTTATTTACAGCTCTTAATGCAGTTGAAAAGAGCAGGCAAAAGAATCCTCGAAGCTTAT GTATCCAGCCACAGACAGCTCCCGATGCGCTGCCCCCTGAGAAAACACTTGAATTGACGCAATATAAAACAAAATGTGAAAACCAAAGTG GATTTATCCTGCAGCTCAAGCAGCTTCTTGCCTGTGGTAATACCAAGTTTGAGGCATTGACAGTTGTGATTCAGCACCTGCTGTCTGAGC GGGAGGAAGCACTGAAACAACACAAAACCCTATCTCAAGAACTTGTTAACCTCCGGGGAGAGCTAGATCCTGATAACTTAAGTGACTCTC TCTTTTCCGGTGATGAAGAAAATGCTGGGACTGAGGAAATAAAGAATGAAATAAATGGAAATTGGATTTCAGCATCCTCCATTAACGAAG CTAGAATTAATGCCAAGGCAAAAAGGCGACTAAGGAAAAACTCATCCCGGGACTCTGGCAGAGGCGATTCGGTCAGCGACAGTGGGAGTG ACGCCCTTAGAAGTGGATTAACTGTGCCAACCAGTCCAAAGGGAAGGTTGCTGGATAGGCGATCCAGATCTGGGAAAGGAAGGGGACTAC CAAAGAAAGGTGGTGCAGGAGGCAAAGGTGTCTGGGGTACACCTGGACAGGTGTATGATGTGGAGGAGGTGGATGTGAAAGATCCTAACT ATGATGATGACCAGGAGAACTGTGTTTATGAAACTGTAGTTTTGCCTTTGGATGAAAGGGCATTTGAGAAGACTTTAACACCAATCATAC AGGAATATTTTGAGCATGGAGATACTAATGAAGTTGCGGAAATGTTAAGAGATTTAAATCTTGGTGAAATGAAAAGTGGAGTACCAGTGT TGGCAGTATCCTTAGCATTGGAGGGGAAGGCTAGTCATAGAGAGATGACATCTAAGCTTCTTTCTGACCTTTGTGGGACAGTAATGAGCA CAACTGATGTGGAAAAATCATTTGATAAATTGTTGAAAGATCTACCTGAATTAGCACTGGATACTCCTAGAGCACCACAGTTGGTGGGCC AGTTTATTGCTAGAGCTGTTGGAGATGGAATTTTATGTAATACCTATATTGATAGTTACAAAGGAACTGTAGATTGTGTGCAGGCTAGAG CTGCTCTGGATAAGGCTACCGTGCTTCTGAGTATGTCTAAAGGTGGAAAGCGTAAAGATAGTGTGTGGGGCTCTGGAGGTGGGCAGCAAT CTGTCAATCACCTTGTTAAAGAGATTGATATGCTGCTGAAAGAATATTTACTCTCTGGAGACATATCTGAAGCTGAACATTGCCTTAAGG AACTGGAAGTACCTCATTTTCACCATGAGCTTGTATATGAAGCTATTATAATGGTTTTAGAGTCAACTGGAGAAAGTACATTTAAGATGA TTTTGGATTTATTAAAGTCCCTTTGGAAGTCTTCTACCATTACTGTAGACCAAATGAAAAGAGGTTATGAGAGAATTTACAATGAAATTC CGGACATTAATCTGGATGTCCCACATTCATACTCTGTGCTGGAGCGGTTTGTAGAAGAATGTTTTCAGGCTGGAATAATTTCCAAACAAC TCAGAGATCTTTGTCCTTCAAGGGGCAGAAAGCGTTTTGTAAGCGAAGGAGATGGAGGTCGTCTTAAACCAGAGAGCTACTGAATATAAG AACTCTTGCAGTCTTAGATGTTATAAAAATATATATCTGAATTGTAAGAGTTGTTAGCACAAGTTTTTTTTTTTTTTTTTTTTAAGCACT TGTTTTGGGTACAAGGCATTTCTGACATTTTATAAACCTACATTTAAGGGGAATTTTTAAAGGAAATGTTTTTTCTTTTTTTTTTGTTTT TCGAGGGGGCAAGGAGGGACAGAAAAGTAACCTCTTCTTAAGTGGAATATTCTAATAAGCTACCTTTTGTAAGTGCCATGTTTATTATCT AATCATTCCAAGTTTTGCATTGATGTCTGACTGCCACTCCTTTCTTTCAAGGACAGTGTTTTTTGTAGTAAAATCACTGGTTTATACAAA GCTTTATTTAGGGGGTAAAGTTAAGCTGCTAAAACCCCATGTTGGCTGCTGCTGTTGAGATACTGTGCTTTGGGAGTAAAAAAAGAAAGT TATTTCTTTGTCTTAAAGAATTTTTAAAAAATTAGTCATGAGACTTATTCATCTTTCCAGGGAACATACTGATTGGTCTTAAAAGACTAG ACAGTTAAGTAAAAGGTGGCTGGAACATCTATTTTTCTACAAAACTGGAAAAATGAACCTGGTTCTAGAAGAATGTACACCAAAATAAAA CATGTGAAGCAGTATTGATTCTTTATTGGGAGTACATTTTTTTAGGTCTCTTAAACTTTAATTTCACACAGTAAATTTTGAATCTCATAA GGAAGCATATTTGAACCTAGTCAATTTAATCTTAGTGTTCCCTTGAAAACTTTTTTTCCCTACAAAATTTTAAGTGAAAAATACAATAGT AAATTAAGATTACACTGGGGAAAAAAATGCAGGTATCACTTTACTCCATTGTTATCTGACCTAGAGCTTAATTAAGTTTTAGAAATATGT AATACCTTCCATCATTCCATCATCCTTAAATTCTGTTACCAAATAATGGCTAATGTTACAAAAAGTTATACTCCAGAGACCCAAAGCTTG ACATTTACCTAATGTATGAGAAAATATTACCAATTAACAATAAAGAATGATCATATTTTTAACCTCTTTTACATAGCCTAATAACTCAGC AAGGCCTCAACGTCTGTGCTAATTTAAACTGCCAAATATTGACTGCAGCAAACAAGAATTATATTCAGAATTTATGAGGGTACTGTTAGG AGTATACTGCTTACAGGTTTAGATATAGTCTGTTAGAATTAAAACCAAGTTTAGTGTTCATATTTACCTCATGGGCTTTATCAAGCCCAT ATTACCTCAGCTTATATATAGTTACCATTTTTAGGTTTTTAATTGTTTGACACTTGGATGATAAATGCAGTCATTTTATTCTCAAGTGCT TAAAATTAATGTAATTAAAAGCTTAGCTGACTACAGAATAGGTGAGGGTTTCTTAAAAATGAGATTTAAGGGCTGGGCACGGTGGCTCAT GCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGCGGATCACTTGAGGTTGGGAGTTCATGACCAGCTTGACCAACATGAAGAAACCC TGTCTCTATTAAAAATACAAAAGTAGCCAGGCATGGTGGCGCATGCGTGTAATCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATTGCTT GAACCTGGGAGGCAGAGGTTGCAGTGAGTCGAGATGGTGCCATTGCTCTCGTTTGGGCAACAAGAGTGAAACTCTTGTCTCAAAAAAAAA AAAAAATGAGGTTTAAGACAGTTTTGTCATTACTGGTGGGATCTGGTCACACAAGATAGCATTAAACGTGACATGGCACATAAAATTGGT TAAAAAATTTTGTTTTTTAATTACGTAATGTAAAAGCCCAACAAACACTTTATGCAAGATTGGAATGTATCTTCAAATTCAGATTTAATA >In-frame_ENST00000381861_ENST00000280154_TCGA-A3-3362-01A_MTUS1_chr8_17532695_-_PDCD4_chr10_112640991_length(amino acids)=670AA_start in transcript=320_stop in transcript=2332 MTVPGGFRSCTETDISSKIFINSTLTPPAGSERHYDATLLTLLVVGSYSLCIIPLLATFTGKKTGNAAVIKYEEKPPKPAFQNGSSGSFY LKPLVSRAHVHLMKTPPKGPSRKNLFTALNAVEKSRQKNPRSLCIQPQTAPDALPPEKTLELTQYKTKCENQSGFILQLKQLLACGNTKF EALTVVIQHLLSEREEALKQHKTLSQELVNLRGELDPDNLSDSLFSGDEENAGTEEIKNEINGNWISASSINEARINAKAKRRLRKNSSR DSGRGDSVSDSGSDALRSGLTVPTSPKGRLLDRRSRSGKGRGLPKKGGAGGKGVWGTPGQVYDVEEVDVKDPNYDDDQENCVYETVVLPL DERAFEKTLTPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCGTVMSTTDVEKSFDKLLKDLPE LALDTPRAPQLVGQFIARAVGDGILCNTYIDSYKGTVDCVQARAALDKATVLLSMSKGGKRKDSVWGSGGGQQSVNHLVKEIDMLLKEYL LSGDISEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQMKRGYERIYNEIPDINLDVPHSYSVLERF -------------------------------------------------------------- >In-frame_ENST00000381861_ENST00000393104_TCGA-A3-3362-01A_MTUS1_chr8_17532695_-_PDCD4_chr10_112640991_length(transcript)=4250nt_BP=966nt AGTACTGTGTCTGATGCTCCTAAGGAGGCTGTAAAGTGCTTTTGTCCATTCCTTTTTGTCTTTTAACAAAGGGGTTTACCATACACCCAC AGAGCCTGTCTAGTGGCGATGTGTTCCTGTTGCGGATTAAGCATTCAAATCAGTGAGTCTCTTTCTTAGTTTGATTTGCTAGCTGGTTTA ATCTGTTTTGTGTAGTGCCTTGGAGCTTACGCATTTTTTTTTTTTTCCCTCCATTCGAATTCACTAAGAGCAAGCATGAGGGATATGAGA GTGAACATGGCTGCAGTTTTTCCTGCTTAAGCTTGCTTTGATCCTTTTAAATGACTGTACCAGGAGGATTTCGCAGTTGTACAGAAACTG ATATTTCTTCAAAAATCTTTATCAATTCTACACTCACCCCACCGGCTGGTTCAGAGAGGCACTATGATGCTACCTTATTGACACTGCTGG TCGTGGGATCGTACAGCCTTTGTATAATTCCTTTGTTAGCCACGTTTACTGGGAAAAAAACTGGTAATGCCGCTGTCATCAAATATGAGG AGAAACCTCCAAAACCAGCATTTCAGAATGGTTCCTCAGGATCCTTTTATTTGAAGCCTTTGGTATCCAGGGCTCATGTTCACTTGATGA AAACTCCTCCAAAAGGTCCTTCGAGAAAAAATTTATTTACAGCTCTTAATGCAGTTGAAAAGAGCAGGCAAAAGAATCCTCGAAGCTTAT GTATCCAGCCACAGACAGCTCCCGATGCGCTGCCCCCTGAGAAAACACTTGAATTGACGCAATATAAAACAAAATGTGAAAACCAAAGTG GATTTATCCTGCAGCTCAAGCAGCTTCTTGCCTGTGGTAATACCAAGTTTGAGGCATTGACAGTTGTGATTCAGCACCTGCTGTCTGAGC GGGAGGAAGCACTGAAACAACACAAAACCCTATCTCAAGAACTTGTTAACCTCCGGGGAGAGCTAGATCCTGATAACTTAAGTGACTCTC TCTTTTCCGGTGATGAAGAAAATGCTGGGACTGAGGAAATAAAGAATGAAATAAATGGAAATTGGATTTCAGCATCCTCCATTAACGAAG CTAGAATTAATGCCAAGGCAAAAAGGCGACTAAGGAAAAACTCATCCCGGGACTCTGGCAGAGGCGATTCGGTCAGCGACAGTGGGAGTG ACGCCCTTAGAAGTGGATTAACTGTGCCAACCAGTCCAAAGGGAAGGTTGCTGGATAGGCGATCCAGATCTGGGAAAGGAAGGGGACTAC CAAAGAAAGGTGGTGCAGGAGGCAAAGGTGTCTGGGGTACACCTGGACAGGTGTATGATGTGGAGGAGGTGGATGTGAAAGATCCTAACT ATGATGATGACCAGGAGAACTGTGTTTATGAAACTGTAGTTTTGCCTTTGGATGAAAGGGCATTTGAGAAGACTTTAACACCAATCATAC AGGAATATTTTGAGCATGGAGATACTAATGAAGTTGCGGAAATGTTAAGAGATTTAAATCTTGGTGAAATGAAAAGTGGAGTACCAGTGT TGGCAGTATCCTTAGCATTGGAGGGGAAGGCTAGTCATAGAGAGATGACATCTAAGCTTCTTTCTGACCTTTGTGGGACAGTAATGAGCA CAACTGATGTGGAAAAATCATTTGATAAATTGTTGAAAGATCTACCTGAATTAGCACTGGATACTCCTAGAGCACCACAGTTGGTGGGCC AGTTTATTGCTAGAGCTGTTGGAGATGGAATTTTATGTAATACCTATATTGATAGTTACAAAGGAACTGTAGATTGTGTGCAGGCTAGAG CTGCTCTGGATAAGGCTACCGTGCTTCTGAGTATGTCTAAAGGTGGAAAGCGTAAAGATAGTGTGTGGGGCTCTGGAGGTGGGCAGCAAT CTGTCAATCACCTTGTTAAAGAGATTGATATGCTGCTGAAAGAATATTTACTCTCTGGAGACATATCTGAAGCTGAACATTGCCTTAAGG AACTGGAAGTACCTCATTTTCACCATGAGCTTGTATATGAAGCTATTATAATGGTTTTAGAGTCAACTGGAGAAAGTACATTTAAGATGA TTTTGGATTTATTAAAGTCCCTTTGGAAGTCTTCTACCATTACTGTAGACCAAATGAAAAGAGGTTATGAGAGAATTTACAATGAAATTC CGGACATTAATCTGGATGTCCCACATTCATACTCTGTGCTGGAGCGGTTTGTAGAAGAATGTTTTCAGGCTGGAATAATTTCCAAACAAC TCAGAGATCTTTGTCCTTCAAGGGGCAGAAAGCGTTTTGTAAGCGAAGGAGATGGAGGTCGTCTTAAACCAGAGAGCTACTGAATATAAG AACTCTTGCAGTCTTAGATGTTATAAAAATATATATCTGAATTGTAAGAGTTGTTAGCACAAGTTTTTTTTTTTTTTTTTTTTAAGCACT TGTTTTGGGTACAAGGCATTTCTGACATTTTATAAACCTACATTTAAGGGGAATTTTTAAAGGAAATGTTTTTTCTTTTTTTTTTGTTTT TCGAGGGGGCAAGGAGGGACAGAAAAGTAACCTCTTCTTAAGTGGAATATTCTAATAAGCTACCTTTTGTAAGTGCCATGTTTATTATCT AATCATTCCAAGTTTTGCATTGATGTCTGACTGCCACTCCTTTCTTTCAAGGACAGTGTTTTTTGTAGTAAAATCACTGGTTTATACAAA GCTTTATTTAGGGGGTAAAGTTAAGCTGCTAAAACCCCATGTTGGCTGCTGCTGTTGAGATACTGTGCTTTGGGAGTAAAAAAAGAAAGT TATTTCTTTGTCTTAAAGAATTTTTAAAAAATTAGTCATGAGACTTATTCATCTTTCCAGGGAACATACTGATTGGTCTTAAAAGACTAG ACAGTTAAGTAAAAGGTGGCTGGAACATCTATTTTTCTACAAAACTGGAAAAATGAACCTGGTTCTAGAAGAATGTACACCAAAATAAAA CATGTGAAGCAGTATTGATTCTTTATTGGGAGTACATTTTTTTAGGTCTCTTAAACTTTAATTTCACACAGTAAATTTTGAATCTCATAA GGAAGCATATTTGAACCTAGTCAATTTAATCTTAGTGTTCCCTTGAAAACTTTTTTTCCCTACAAAATTTTAAGTGAAAAATACAATAGT AAATTAAGATTACACTGGGGAAAAAAATGCAGGTATCACTTTACTCCATTGTTATCTGACCTAGAGCTTAATTAAGTTTTAGAAATATGT AATACCTTCCATCATTCCATCATCCTTAAATTCTGTTACCAAATAATGGCTAATGTTACAAAAAGTTATACTCCAGAGACCCAAAGCTTG ACATTTACCTAATGTATGAGAAAATATTACCAATTAACAATAAAGAATGATCATATTTTTAACCTCTTTTACATAGCCTAATAACTCAGC AAGGCCTCAACGTCTGTGCTAATTTAAACTGCCAAATATTGACTGCAGCAAACAAGAATTATATTCAGAATTTATGAGGGTACTGTTAGG AGTATACTGCTTACAGGTTTAGATATAGTCTGTTAGAATTAAAACCAAGTTTAGTGTTCATATTTACCTCATGGGCTTTATCAAGCCCAT ATTACCTCAGCTTATATATAGTTACCATTTTTAGGTTTTTAATTGTTTGACACTTGGATGATAAATGCAGTCATTTTATTCTCAAGTGCT TAAAATTAATGTAATTAAAAGCTTAGCTGACTACAGAATAGGTGAGGGTTTCTTAAAAATGAGATTTAAGGGCTGGGCACGGTGGCTCAT GCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGCGGATCACTTGAGGTTGGGAGTTCATGACCAGCTTGACCAACATGAAGAAACCC TGTCTCTATTAAAAATACAAAAGTAGCCAGGCATGGTGGCGCATGCGTGTAATCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATTGCTT GAACCTGGGAGGCAGAGGTTGCAGTGAGTCGAGATGGTGCCATTGCTCTCGTTTGGGCAACAAGAGTGAAACTCTTGTCTCAAAAAAAAA AAAAAATGAGGTTTAAGACAGTTTTGTCATTACTGGTGGGATCTGGTCACACAAGATAGCATTAAACGTGACATGGCACATAAAATTGGT TAAAAAATTTTGTTTTTTAATTACGTAATGTAAAAGCCCAACAAACACTTTATGCAAGATTGGAATGTATCTTCAAATTCAGATTTAATA >In-frame_ENST00000381861_ENST00000393104_TCGA-A3-3362-01A_MTUS1_chr8_17532695_-_PDCD4_chr10_112640991_length(amino acids)=670AA_start in transcript=320_stop in transcript=2332 MTVPGGFRSCTETDISSKIFINSTLTPPAGSERHYDATLLTLLVVGSYSLCIIPLLATFTGKKTGNAAVIKYEEKPPKPAFQNGSSGSFY LKPLVSRAHVHLMKTPPKGPSRKNLFTALNAVEKSRQKNPRSLCIQPQTAPDALPPEKTLELTQYKTKCENQSGFILQLKQLLACGNTKF EALTVVIQHLLSEREEALKQHKTLSQELVNLRGELDPDNLSDSLFSGDEENAGTEEIKNEINGNWISASSINEARINAKAKRRLRKNSSR DSGRGDSVSDSGSDALRSGLTVPTSPKGRLLDRRSRSGKGRGLPKKGGAGGKGVWGTPGQVYDVEEVDVKDPNYDDDQENCVYETVVLPL DERAFEKTLTPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCGTVMSTTDVEKSFDKLLKDLPE LALDTPRAPQLVGQFIARAVGDGILCNTYIDSYKGTVDCVQARAALDKATVLLSMSKGGKRKDSVWGSGGGQQSVNHLVKEIDMLLKEYL LSGDISEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQMKRGYERIYNEIPDINLDVPHSYSVLERF -------------------------------------------------------------- >In-frame_ENST00000519263_ENST00000280154_TCGA-A3-3362-01A_MTUS1_chr8_17532695_-_PDCD4_chr10_112640991_length(transcript)=6202nt_BP=2917nt AAACATTTTATTTCTTCCAGGGAACAACAAATCATTTAATCTTCAGAGCATCTTAGACTGAAAACCTTTCAACTGTGCTGAAAAACCTAG AAGACAGACCATTTTGCCCACCCTCTCATTTAAAAGGAATTGAAGAAGAAATAAAATGGCAGAGGTTTAAGGTTACTATTCAGGATGACT GATGATAATTCAGATGATAAAATAGAAGATGAATTGCAAACCTTCTTTACCAGTGATAAAGATGGAAATACACATGCATACAACCCGAAA TCACCACCTACACAAAACTCTTCAGCCAGCAGTGTGAACTGGAATTCTGCCAACCCAGATGACATGGTGGTTGATTATGAAACTGACCCT GCTGTAGTTACTGGTGAAAATATTTCTTTAAGCCTTCAGGGTGTTGAAGTATTTGGTCATGAAAAGTCTTCTAGTGATTTCATTAGTAAG CAGGTGTTAGATATGCATAAAGATTCTATTTGTCAGTGTCCTGCACTTGTAGGTACTGAGAAGCCCAAATATCTGCAACACAGTTGTCAT TCCCTAGAAGCAGTTGAGGGCCAGAGTGTTGAGCCATCTTTGCCTTTTGTGTGGAAGCCTAATGACAATTTGAACTGTGCAGGCTACTGT GATGCCTTGGAGCTAAACCAAACATTTGACATGACAGTGGATAAAGTTAACTGCACCTTTATATCACATCATGCCATCGGAAAGAGTCAG TCCTTCCATACTGCTGGAAGCCTGCCACCAACTGGTAGGAGAAGTGGAAGTACATCTTCTTTATCCTATTCCACTTGGACATCTTCCCAT TCTGATAAGACGCATGCAAGAGAAACTACTTATGATAGAGAAAGCTTTGAAAACCCTCAAGTCACACCATCAGAAGCCCAAGACATGACT TACACAGCATTTTCTGATGTGGTGATGCAAAGTGAGGTTTTTGTTTCAGATATTGGAAATCAGTGTGCATGTTCTTCAGGAAAGGTCACC AGTGAGTACACAGATGGATCACAACAAAGACTAGTTGGAGAAAAGGAGACACAAGCACTAACACCAGTTTCTGATGGCATGGAAGTCCCC AATGATTCTGCATTACAAGAGTTCTTTTGTTTATCCCATGATGAATCCAATAGCGAACCACATTCACAGAGCTCATACAGGCACAAGGAA ATGGGCCAAAATCTGAGAGAGACAGTGTCCTATTGTCTTATTGATGATGAATGCCCTTTAATGGTGCCAGCTTTTGATAAGAGCGAAGCT CAAGTGCTGAACCCAGAGCATAAAGTCACTGAGACTGAAGACACACAAATGGTCTCCAAAGGAAAGGATTTGGGAACCCAAAATCATACC TCAGAATTGATTCTAAGTAGCCCGCCAGGACAAAAGGTGGGCTCGTCATTTGGACTGACTTGGGATGCAAATGATATGGTCATTAGCACA GACAAAACGATGTGCATGTCAACACCAGTCCTAGAACCCACAAAAGTAACCTTTTCTGTTTCACCGATTGAAGCGACGGAGAAATGTAAG AAAGTGGAGAAGGGTAATCGAGGGCTTAAAAACATACCAGACTCGAAGGAGGCACCTGTGAACCTGTGTAAACCCAGTTTAGGAAAATCA ACAATCAAAACGAATACCCCAATAGGCTGCAAAGTTAGAAAAACTGAAATTATAAGTTACCCAAGACCAAACTTCAAGAATGTCAAAGCA AAAGTTATGTCTAGAGCAGTGTTGCAGCCCAAAGATGCTGCTTTATCAAAGGTCACGCCCAGACCTCAGCAGACCAGTGCCTCATCACCC TCATCAGTGAATTCAAGACAACAAACAGTCTTGAGCAGAACACCGAGATCTGACTTGAATGCAGACAAAAAAGCAGAAATTCTAATTAAC AAGACACATAAGCAGCAGTTTAATAAACTCATTACTAGCCAGGCTGTGCATGTTACAACTCATTCTAAAAATGCTTCACACAGGGTTCCA AGAACAACATCTGCCGTGAAATCGAATCAGGAAGATGTTGACAAAGCCAGTTCTTCTAACTCAGCATGCGAGACCGGGTCCGTTTCTGCG TTGTTTCAGAAGATCAAAGGCATACTCCCTGTTAAAATGGAAAGTGCAGAATGTTTGGAAATGACCTATGTTCCCAACATTGATAGGATT AGCCCTGAAAAGAAGGGTGAAAAAGAAAATGGGACATCTATGGAAAAACAAGAGCTGAAACAAGAGATTATGAATGAGACTTTTGAATAT GGTTCTCTGTTTTTGGGCTCTGCTTCAAAAACAACGACCACCTCAGGTAGGAATATATCCAAGCCTGACTCCTGCGGTTTGAGGCAAATA GCTGCTCCAAAAGCCAAAGTGGGGCCCCCTGTTTCCTGTTTGAGGCGGAACAGTGACAATAGAAATCCCAGTGCTGATCGAGCCGTATCT CCTCAGAGGATCAGGCGTGTGTCCAGTTCTGCTGGTAATGCCGCTGTCATCAAATATGAGGAGAAACCTCCAAAACCAGCATTTCAGAAT GGTTCCTCAGGATCCTTTTATTTGAAGCCTTTGGTATCCAGGGCTCATGTTCACTTGATGAAAACTCCTCCAAAAGGTCCTTCGAGAAAA AATTTATTTACAGCTCTTAATGCAGTTGAAAAGAGCAGGCAAAAGAATCCTCGAAGCTTATGTATCCAGCCACAGACAGCTCCCGATGCG CTGCCCCCTGAGAAAACACTTGAATTGACGCAATATAAAACAAAATGTGAAAACCAAAGTGGATTTATCCTGCAGCTCAAGCAGCTTCTT GCCTGTGGTAATACCAAGTTTGAGGCATTGACAGTTGTGATTCAGCACCTGCTGTCTGAGCGGGAGGAAGCACTGAAACAACACAAAACC CTATCTCAAGAACTTGTTAACCTCCGGGGAGAGCTAGATCCTGATAACTTAAGTGACTCTCTCTTTTCCGGTGATGAAGAAAATGCTGGG ACTGAGGAAATAAAGAATGAAATAAATGGAAATTGGATTTCAGCATCCTCCATTAACGAAGCTAGAATTAATGCCAAGGCAAAAAGGCGA CTAAGGAAAAACTCATCCCGGGACTCTGGCAGAGGCGATTCGGTCAGCGACAGTGGGAGTGACGCCCTTAGAAGTGGATTAACTGTGCCA ACCAGTCCAAAGGGAAGGTTGCTGGATAGGCGATCCAGATCTGGGAAAGGAAGGGGACTACCAAAGAAAGGTGGTGCAGGAGGCAAAGGT GTCTGGGGTACACCTGGACAGGTGTATGATGTGGAGGAGGTGGATGTGAAAGATCCTAACTATGATGATGACCAGGAGAACTGTGTTTAT GAAACTGTAGTTTTGCCTTTGGATGAAAGGGCATTTGAGAAGACTTTAACACCAATCATACAGGAATATTTTGAGCATGGAGATACTAAT GAAGTTGCGGAAATGTTAAGAGATTTAAATCTTGGTGAAATGAAAAGTGGAGTACCAGTGTTGGCAGTATCCTTAGCATTGGAGGGGAAG GCTAGTCATAGAGAGATGACATCTAAGCTTCTTTCTGACCTTTGTGGGACAGTAATGAGCACAACTGATGTGGAAAAATCATTTGATAAA TTGTTGAAAGATCTACCTGAATTAGCACTGGATACTCCTAGAGCACCACAGTTGGTGGGCCAGTTTATTGCTAGAGCTGTTGGAGATGGA ATTTTATGTAATACCTATATTGATAGTTACAAAGGAACTGTAGATTGTGTGCAGGCTAGAGCTGCTCTGGATAAGGCTACCGTGCTTCTG AGTATGTCTAAAGGTGGAAAGCGTAAAGATAGTGTGTGGGGCTCTGGAGGTGGGCAGCAATCTGTCAATCACCTTGTTAAAGAGATTGAT ATGCTGCTGAAAGAATATTTACTCTCTGGAGACATATCTGAAGCTGAACATTGCCTTAAGGAACTGGAAGTACCTCATTTTCACCATGAG CTTGTATATGAAGCTATTATAATGGTTTTAGAGTCAACTGGAGAAAGTACATTTAAGATGATTTTGGATTTATTAAAGTCCCTTTGGAAG TCTTCTACCATTACTGTAGACCAAATGAAAAGAGGTTATGAGAGAATTTACAATGAAATTCCGGACATTAATCTGGATGTCCCACATTCA TACTCTGTGCTGGAGCGGTTTGTAGAAGAATGTTTTCAGGCTGGAATAATTTCCAAACAACTCAGAGATCTTTGTCCTTCAAGGGGCAGA AAGCGTTTTGTAAGCGAAGGAGATGGAGGTCGTCTTAAACCAGAGAGCTACTGAATATAAGAACTCTTGCAGTCTTAGATGTTATAAAAA TATATATCTGAATTGTAAGAGTTGTTAGCACAAGTTTTTTTTTTTTTTTTTTTTAAGCACTTGTTTTGGGTACAAGGCATTTCTGACATT TTATAAACCTACATTTAAGGGGAATTTTTAAAGGAAATGTTTTTTCTTTTTTTTTTGTTTTTCGAGGGGGCAAGGAGGGACAGAAAAGTA ACCTCTTCTTAAGTGGAATATTCTAATAAGCTACCTTTTGTAAGTGCCATGTTTATTATCTAATCATTCCAAGTTTTGCATTGATGTCTG ACTGCCACTCCTTTCTTTCAAGGACAGTGTTTTTTGTAGTAAAATCACTGGTTTATACAAAGCTTTATTTAGGGGGTAAAGTTAAGCTGC TAAAACCCCATGTTGGCTGCTGCTGTTGAGATACTGTGCTTTGGGAGTAAAAAAAGAAAGTTATTTCTTTGTCTTAAAGAATTTTTAAAA AATTAGTCATGAGACTTATTCATCTTTCCAGGGAACATACTGATTGGTCTTAAAAGACTAGACAGTTAAGTAAAAGGTGGCTGGAACATC TATTTTTCTACAAAACTGGAAAAATGAACCTGGTTCTAGAAGAATGTACACCAAAATAAAACATGTGAAGCAGTATTGATTCTTTATTGG GAGTACATTTTTTTAGGTCTCTTAAACTTTAATTTCACACAGTAAATTTTGAATCTCATAAGGAAGCATATTTGAACCTAGTCAATTTAA TCTTAGTGTTCCCTTGAAAACTTTTTTTCCCTACAAAATTTTAAGTGAAAAATACAATAGTAAATTAAGATTACACTGGGGAAAAAAATG CAGGTATCACTTTACTCCATTGTTATCTGACCTAGAGCTTAATTAAGTTTTAGAAATATGTAATACCTTCCATCATTCCATCATCCTTAA ATTCTGTTACCAAATAATGGCTAATGTTACAAAAAGTTATACTCCAGAGACCCAAAGCTTGACATTTACCTAATGTATGAGAAAATATTA CCAATTAACAATAAAGAATGATCATATTTTTAACCTCTTTTACATAGCCTAATAACTCAGCAAGGCCTCAACGTCTGTGCTAATTTAAAC TGCCAAATATTGACTGCAGCAAACAAGAATTATATTCAGAATTTATGAGGGTACTGTTAGGAGTATACTGCTTACAGGTTTAGATATAGT CTGTTAGAATTAAAACCAAGTTTAGTGTTCATATTTACCTCATGGGCTTTATCAAGCCCATATTACCTCAGCTTATATATAGTTACCATT TTTAGGTTTTTAATTGTTTGACACTTGGATGATAAATGCAGTCATTTTATTCTCAAGTGCTTAAAATTAATGTAATTAAAAGCTTAGCTG ACTACAGAATAGGTGAGGGTTTCTTAAAAATGAGATTTAAGGGCTGGGCACGGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCG AGGTGGGCGGATCACTTGAGGTTGGGAGTTCATGACCAGCTTGACCAACATGAAGAAACCCTGTCTCTATTAAAAATACAAAAGTAGCCA GGCATGGTGGCGCATGCGTGTAATCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATTGCTTGAACCTGGGAGGCAGAGGTTGCAGTGAGT CGAGATGGTGCCATTGCTCTCGTTTGGGCAACAAGAGTGAAACTCTTGTCTCAAAAAAAAAAAAAAATGAGGTTTAAGACAGTTTTGTCA TTACTGGTGGGATCTGGTCACACAAGATAGCATTAAACGTGACATGGCACATAAAATTGGTTAAAAAATTTTGTTTTTTAATTACGTAAT >In-frame_ENST00000519263_ENST00000280154_TCGA-A3-3362-01A_MTUS1_chr8_17532695_-_PDCD4_chr10_112640991_length(amino acids)=1369AA_start in transcript=174_stop in transcript=4283 MTDDNSDDKIEDELQTFFTSDKDGNTHAYNPKSPPTQNSSASSVNWNSANPDDMVVDYETDPAVVTGENISLSLQGVEVFGHEKSSSDFI SKQVLDMHKDSICQCPALVGTEKPKYLQHSCHSLEAVEGQSVEPSLPFVWKPNDNLNCAGYCDALELNQTFDMTVDKVNCTFISHHAIGK SQSFHTAGSLPPTGRRSGSTSSLSYSTWTSSHSDKTHARETTYDRESFENPQVTPSEAQDMTYTAFSDVVMQSEVFVSDIGNQCACSSGK VTSEYTDGSQQRLVGEKETQALTPVSDGMEVPNDSALQEFFCLSHDESNSEPHSQSSYRHKEMGQNLRETVSYCLIDDECPLMVPAFDKS EAQVLNPEHKVTETEDTQMVSKGKDLGTQNHTSELILSSPPGQKVGSSFGLTWDANDMVISTDKTMCMSTPVLEPTKVTFSVSPIEATEK CKKVEKGNRGLKNIPDSKEAPVNLCKPSLGKSTIKTNTPIGCKVRKTEIISYPRPNFKNVKAKVMSRAVLQPKDAALSKVTPRPQQTSAS SPSSVNSRQQTVLSRTPRSDLNADKKAEILINKTHKQQFNKLITSQAVHVTTHSKNASHRVPRTTSAVKSNQEDVDKASSSNSACETGSV SALFQKIKGILPVKMESAECLEMTYVPNIDRISPEKKGEKENGTSMEKQELKQEIMNETFEYGSLFLGSASKTTTTSGRNISKPDSCGLR QIAAPKAKVGPPVSCLRRNSDNRNPSADRAVSPQRIRRVSSSAGNAAVIKYEEKPPKPAFQNGSSGSFYLKPLVSRAHVHLMKTPPKGPS RKNLFTALNAVEKSRQKNPRSLCIQPQTAPDALPPEKTLELTQYKTKCENQSGFILQLKQLLACGNTKFEALTVVIQHLLSEREEALKQH KTLSQELVNLRGELDPDNLSDSLFSGDEENAGTEEIKNEINGNWISASSINEARINAKAKRRLRKNSSRDSGRGDSVSDSGSDALRSGLT VPTSPKGRLLDRRSRSGKGRGLPKKGGAGGKGVWGTPGQVYDVEEVDVKDPNYDDDQENCVYETVVLPLDERAFEKTLTPIIQEYFEHGD TNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCGTVMSTTDVEKSFDKLLKDLPELALDTPRAPQLVGQFIARAVG DGILCNTYIDSYKGTVDCVQARAALDKATVLLSMSKGGKRKDSVWGSGGGQQSVNHLVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFH HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQMKRGYERIYNEIPDINLDVPHSYSVLERFVEECFQAGIISKQLRDLCPSR -------------------------------------------------------------- >In-frame_ENST00000519263_ENST00000393104_TCGA-A3-3362-01A_MTUS1_chr8_17532695_-_PDCD4_chr10_112640991_length(transcript)=6201nt_BP=2917nt AAACATTTTATTTCTTCCAGGGAACAACAAATCATTTAATCTTCAGAGCATCTTAGACTGAAAACCTTTCAACTGTGCTGAAAAACCTAG AAGACAGACCATTTTGCCCACCCTCTCATTTAAAAGGAATTGAAGAAGAAATAAAATGGCAGAGGTTTAAGGTTACTATTCAGGATGACT GATGATAATTCAGATGATAAAATAGAAGATGAATTGCAAACCTTCTTTACCAGTGATAAAGATGGAAATACACATGCATACAACCCGAAA TCACCACCTACACAAAACTCTTCAGCCAGCAGTGTGAACTGGAATTCTGCCAACCCAGATGACATGGTGGTTGATTATGAAACTGACCCT GCTGTAGTTACTGGTGAAAATATTTCTTTAAGCCTTCAGGGTGTTGAAGTATTTGGTCATGAAAAGTCTTCTAGTGATTTCATTAGTAAG CAGGTGTTAGATATGCATAAAGATTCTATTTGTCAGTGTCCTGCACTTGTAGGTACTGAGAAGCCCAAATATCTGCAACACAGTTGTCAT TCCCTAGAAGCAGTTGAGGGCCAGAGTGTTGAGCCATCTTTGCCTTTTGTGTGGAAGCCTAATGACAATTTGAACTGTGCAGGCTACTGT GATGCCTTGGAGCTAAACCAAACATTTGACATGACAGTGGATAAAGTTAACTGCACCTTTATATCACATCATGCCATCGGAAAGAGTCAG TCCTTCCATACTGCTGGAAGCCTGCCACCAACTGGTAGGAGAAGTGGAAGTACATCTTCTTTATCCTATTCCACTTGGACATCTTCCCAT TCTGATAAGACGCATGCAAGAGAAACTACTTATGATAGAGAAAGCTTTGAAAACCCTCAAGTCACACCATCAGAAGCCCAAGACATGACT TACACAGCATTTTCTGATGTGGTGATGCAAAGTGAGGTTTTTGTTTCAGATATTGGAAATCAGTGTGCATGTTCTTCAGGAAAGGTCACC AGTGAGTACACAGATGGATCACAACAAAGACTAGTTGGAGAAAAGGAGACACAAGCACTAACACCAGTTTCTGATGGCATGGAAGTCCCC AATGATTCTGCATTACAAGAGTTCTTTTGTTTATCCCATGATGAATCCAATAGCGAACCACATTCACAGAGCTCATACAGGCACAAGGAA ATGGGCCAAAATCTGAGAGAGACAGTGTCCTATTGTCTTATTGATGATGAATGCCCTTTAATGGTGCCAGCTTTTGATAAGAGCGAAGCT CAAGTGCTGAACCCAGAGCATAAAGTCACTGAGACTGAAGACACACAAATGGTCTCCAAAGGAAAGGATTTGGGAACCCAAAATCATACC TCAGAATTGATTCTAAGTAGCCCGCCAGGACAAAAGGTGGGCTCGTCATTTGGACTGACTTGGGATGCAAATGATATGGTCATTAGCACA GACAAAACGATGTGCATGTCAACACCAGTCCTAGAACCCACAAAAGTAACCTTTTCTGTTTCACCGATTGAAGCGACGGAGAAATGTAAG AAAGTGGAGAAGGGTAATCGAGGGCTTAAAAACATACCAGACTCGAAGGAGGCACCTGTGAACCTGTGTAAACCCAGTTTAGGAAAATCA ACAATCAAAACGAATACCCCAATAGGCTGCAAAGTTAGAAAAACTGAAATTATAAGTTACCCAAGACCAAACTTCAAGAATGTCAAAGCA AAAGTTATGTCTAGAGCAGTGTTGCAGCCCAAAGATGCTGCTTTATCAAAGGTCACGCCCAGACCTCAGCAGACCAGTGCCTCATCACCC TCATCAGTGAATTCAAGACAACAAACAGTCTTGAGCAGAACACCGAGATCTGACTTGAATGCAGACAAAAAAGCAGAAATTCTAATTAAC AAGACACATAAGCAGCAGTTTAATAAACTCATTACTAGCCAGGCTGTGCATGTTACAACTCATTCTAAAAATGCTTCACACAGGGTTCCA AGAACAACATCTGCCGTGAAATCGAATCAGGAAGATGTTGACAAAGCCAGTTCTTCTAACTCAGCATGCGAGACCGGGTCCGTTTCTGCG TTGTTTCAGAAGATCAAAGGCATACTCCCTGTTAAAATGGAAAGTGCAGAATGTTTGGAAATGACCTATGTTCCCAACATTGATAGGATT AGCCCTGAAAAGAAGGGTGAAAAAGAAAATGGGACATCTATGGAAAAACAAGAGCTGAAACAAGAGATTATGAATGAGACTTTTGAATAT GGTTCTCTGTTTTTGGGCTCTGCTTCAAAAACAACGACCACCTCAGGTAGGAATATATCCAAGCCTGACTCCTGCGGTTTGAGGCAAATA GCTGCTCCAAAAGCCAAAGTGGGGCCCCCTGTTTCCTGTTTGAGGCGGAACAGTGACAATAGAAATCCCAGTGCTGATCGAGCCGTATCT CCTCAGAGGATCAGGCGTGTGTCCAGTTCTGCTGGTAATGCCGCTGTCATCAAATATGAGGAGAAACCTCCAAAACCAGCATTTCAGAAT GGTTCCTCAGGATCCTTTTATTTGAAGCCTTTGGTATCCAGGGCTCATGTTCACTTGATGAAAACTCCTCCAAAAGGTCCTTCGAGAAAA AATTTATTTACAGCTCTTAATGCAGTTGAAAAGAGCAGGCAAAAGAATCCTCGAAGCTTATGTATCCAGCCACAGACAGCTCCCGATGCG CTGCCCCCTGAGAAAACACTTGAATTGACGCAATATAAAACAAAATGTGAAAACCAAAGTGGATTTATCCTGCAGCTCAAGCAGCTTCTT GCCTGTGGTAATACCAAGTTTGAGGCATTGACAGTTGTGATTCAGCACCTGCTGTCTGAGCGGGAGGAAGCACTGAAACAACACAAAACC CTATCTCAAGAACTTGTTAACCTCCGGGGAGAGCTAGATCCTGATAACTTAAGTGACTCTCTCTTTTCCGGTGATGAAGAAAATGCTGGG ACTGAGGAAATAAAGAATGAAATAAATGGAAATTGGATTTCAGCATCCTCCATTAACGAAGCTAGAATTAATGCCAAGGCAAAAAGGCGA CTAAGGAAAAACTCATCCCGGGACTCTGGCAGAGGCGATTCGGTCAGCGACAGTGGGAGTGACGCCCTTAGAAGTGGATTAACTGTGCCA ACCAGTCCAAAGGGAAGGTTGCTGGATAGGCGATCCAGATCTGGGAAAGGAAGGGGACTACCAAAGAAAGGTGGTGCAGGAGGCAAAGGT GTCTGGGGTACACCTGGACAGGTGTATGATGTGGAGGAGGTGGATGTGAAAGATCCTAACTATGATGATGACCAGGAGAACTGTGTTTAT GAAACTGTAGTTTTGCCTTTGGATGAAAGGGCATTTGAGAAGACTTTAACACCAATCATACAGGAATATTTTGAGCATGGAGATACTAAT GAAGTTGCGGAAATGTTAAGAGATTTAAATCTTGGTGAAATGAAAAGTGGAGTACCAGTGTTGGCAGTATCCTTAGCATTGGAGGGGAAG GCTAGTCATAGAGAGATGACATCTAAGCTTCTTTCTGACCTTTGTGGGACAGTAATGAGCACAACTGATGTGGAAAAATCATTTGATAAA TTGTTGAAAGATCTACCTGAATTAGCACTGGATACTCCTAGAGCACCACAGTTGGTGGGCCAGTTTATTGCTAGAGCTGTTGGAGATGGA ATTTTATGTAATACCTATATTGATAGTTACAAAGGAACTGTAGATTGTGTGCAGGCTAGAGCTGCTCTGGATAAGGCTACCGTGCTTCTG AGTATGTCTAAAGGTGGAAAGCGTAAAGATAGTGTGTGGGGCTCTGGAGGTGGGCAGCAATCTGTCAATCACCTTGTTAAAGAGATTGAT ATGCTGCTGAAAGAATATTTACTCTCTGGAGACATATCTGAAGCTGAACATTGCCTTAAGGAACTGGAAGTACCTCATTTTCACCATGAG CTTGTATATGAAGCTATTATAATGGTTTTAGAGTCAACTGGAGAAAGTACATTTAAGATGATTTTGGATTTATTAAAGTCCCTTTGGAAG TCTTCTACCATTACTGTAGACCAAATGAAAAGAGGTTATGAGAGAATTTACAATGAAATTCCGGACATTAATCTGGATGTCCCACATTCA TACTCTGTGCTGGAGCGGTTTGTAGAAGAATGTTTTCAGGCTGGAATAATTTCCAAACAACTCAGAGATCTTTGTCCTTCAAGGGGCAGA AAGCGTTTTGTAAGCGAAGGAGATGGAGGTCGTCTTAAACCAGAGAGCTACTGAATATAAGAACTCTTGCAGTCTTAGATGTTATAAAAA TATATATCTGAATTGTAAGAGTTGTTAGCACAAGTTTTTTTTTTTTTTTTTTTTAAGCACTTGTTTTGGGTACAAGGCATTTCTGACATT TTATAAACCTACATTTAAGGGGAATTTTTAAAGGAAATGTTTTTTCTTTTTTTTTTGTTTTTCGAGGGGGCAAGGAGGGACAGAAAAGTA ACCTCTTCTTAAGTGGAATATTCTAATAAGCTACCTTTTGTAAGTGCCATGTTTATTATCTAATCATTCCAAGTTTTGCATTGATGTCTG ACTGCCACTCCTTTCTTTCAAGGACAGTGTTTTTTGTAGTAAAATCACTGGTTTATACAAAGCTTTATTTAGGGGGTAAAGTTAAGCTGC TAAAACCCCATGTTGGCTGCTGCTGTTGAGATACTGTGCTTTGGGAGTAAAAAAAGAAAGTTATTTCTTTGTCTTAAAGAATTTTTAAAA AATTAGTCATGAGACTTATTCATCTTTCCAGGGAACATACTGATTGGTCTTAAAAGACTAGACAGTTAAGTAAAAGGTGGCTGGAACATC TATTTTTCTACAAAACTGGAAAAATGAACCTGGTTCTAGAAGAATGTACACCAAAATAAAACATGTGAAGCAGTATTGATTCTTTATTGG GAGTACATTTTTTTAGGTCTCTTAAACTTTAATTTCACACAGTAAATTTTGAATCTCATAAGGAAGCATATTTGAACCTAGTCAATTTAA TCTTAGTGTTCCCTTGAAAACTTTTTTTCCCTACAAAATTTTAAGTGAAAAATACAATAGTAAATTAAGATTACACTGGGGAAAAAAATG CAGGTATCACTTTACTCCATTGTTATCTGACCTAGAGCTTAATTAAGTTTTAGAAATATGTAATACCTTCCATCATTCCATCATCCTTAA ATTCTGTTACCAAATAATGGCTAATGTTACAAAAAGTTATACTCCAGAGACCCAAAGCTTGACATTTACCTAATGTATGAGAAAATATTA CCAATTAACAATAAAGAATGATCATATTTTTAACCTCTTTTACATAGCCTAATAACTCAGCAAGGCCTCAACGTCTGTGCTAATTTAAAC TGCCAAATATTGACTGCAGCAAACAAGAATTATATTCAGAATTTATGAGGGTACTGTTAGGAGTATACTGCTTACAGGTTTAGATATAGT CTGTTAGAATTAAAACCAAGTTTAGTGTTCATATTTACCTCATGGGCTTTATCAAGCCCATATTACCTCAGCTTATATATAGTTACCATT TTTAGGTTTTTAATTGTTTGACACTTGGATGATAAATGCAGTCATTTTATTCTCAAGTGCTTAAAATTAATGTAATTAAAAGCTTAGCTG ACTACAGAATAGGTGAGGGTTTCTTAAAAATGAGATTTAAGGGCTGGGCACGGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCG AGGTGGGCGGATCACTTGAGGTTGGGAGTTCATGACCAGCTTGACCAACATGAAGAAACCCTGTCTCTATTAAAAATACAAAAGTAGCCA GGCATGGTGGCGCATGCGTGTAATCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATTGCTTGAACCTGGGAGGCAGAGGTTGCAGTGAGT CGAGATGGTGCCATTGCTCTCGTTTGGGCAACAAGAGTGAAACTCTTGTCTCAAAAAAAAAAAAAAATGAGGTTTAAGACAGTTTTGTCA TTACTGGTGGGATCTGGTCACACAAGATAGCATTAAACGTGACATGGCACATAAAATTGGTTAAAAAATTTTGTTTTTTAATTACGTAAT >In-frame_ENST00000519263_ENST00000393104_TCGA-A3-3362-01A_MTUS1_chr8_17532695_-_PDCD4_chr10_112640991_length(amino acids)=1369AA_start in transcript=174_stop in transcript=4283 MTDDNSDDKIEDELQTFFTSDKDGNTHAYNPKSPPTQNSSASSVNWNSANPDDMVVDYETDPAVVTGENISLSLQGVEVFGHEKSSSDFI SKQVLDMHKDSICQCPALVGTEKPKYLQHSCHSLEAVEGQSVEPSLPFVWKPNDNLNCAGYCDALELNQTFDMTVDKVNCTFISHHAIGK SQSFHTAGSLPPTGRRSGSTSSLSYSTWTSSHSDKTHARETTYDRESFENPQVTPSEAQDMTYTAFSDVVMQSEVFVSDIGNQCACSSGK VTSEYTDGSQQRLVGEKETQALTPVSDGMEVPNDSALQEFFCLSHDESNSEPHSQSSYRHKEMGQNLRETVSYCLIDDECPLMVPAFDKS EAQVLNPEHKVTETEDTQMVSKGKDLGTQNHTSELILSSPPGQKVGSSFGLTWDANDMVISTDKTMCMSTPVLEPTKVTFSVSPIEATEK CKKVEKGNRGLKNIPDSKEAPVNLCKPSLGKSTIKTNTPIGCKVRKTEIISYPRPNFKNVKAKVMSRAVLQPKDAALSKVTPRPQQTSAS SPSSVNSRQQTVLSRTPRSDLNADKKAEILINKTHKQQFNKLITSQAVHVTTHSKNASHRVPRTTSAVKSNQEDVDKASSSNSACETGSV SALFQKIKGILPVKMESAECLEMTYVPNIDRISPEKKGEKENGTSMEKQELKQEIMNETFEYGSLFLGSASKTTTTSGRNISKPDSCGLR QIAAPKAKVGPPVSCLRRNSDNRNPSADRAVSPQRIRRVSSSAGNAAVIKYEEKPPKPAFQNGSSGSFYLKPLVSRAHVHLMKTPPKGPS RKNLFTALNAVEKSRQKNPRSLCIQPQTAPDALPPEKTLELTQYKTKCENQSGFILQLKQLLACGNTKFEALTVVIQHLLSEREEALKQH KTLSQELVNLRGELDPDNLSDSLFSGDEENAGTEEIKNEINGNWISASSINEARINAKAKRRLRKNSSRDSGRGDSVSDSGSDALRSGLT VPTSPKGRLLDRRSRSGKGRGLPKKGGAGGKGVWGTPGQVYDVEEVDVKDPNYDDDQENCVYETVVLPLDERAFEKTLTPIIQEYFEHGD TNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCGTVMSTTDVEKSFDKLLKDLPELALDTPRAPQLVGQFIARAVG DGILCNTYIDSYKGTVDCVQARAALDKATVLLSMSKGGKRKDSVWGSGGGQQSVNHLVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFH HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQMKRGYERIYNEIPDINLDVPHSYSVLERFVEECFQAGIISKQLRDLCPSR -------------------------------------------------------------- >In-frame_ENST00000400046_ENST00000280154_TCGA-A3-3362-01A_MTUS1_chr8_17532695_-_PDCD4_chr10_112640991_length(transcript)=3406nt_BP=121nt ATGGGCTGCCCCAGCAGCAAACTGTGCCTCTATTCTCCATGTGCAGCAACAAGGCGGGAGGAAGCACTGAAACAACACAAAACCCTATCT CAAGAACTTGTTAACCTCCGGGGAGAGCTAGATCCTGATAACTTAAGTGACTCTCTCTTTTCCGGTGATGAAGAAAATGCTGGGACTGAG GAAATAAAGAATGAAATAAATGGAAATTGGATTTCAGCATCCTCCATTAACGAAGCTAGAATTAATGCCAAGGCAAAAAGGCGACTAAGG AAAAACTCATCCCGGGACTCTGGCAGAGGCGATTCGGTCAGCGACAGTGGGAGTGACGCCCTTAGAAGTGGATTAACTGTGCCAACCAGT CCAAAGGGAAGGTTGCTGGATAGGCGATCCAGATCTGGGAAAGGAAGGGGACTACCAAAGAAAGGTGGTGCAGGAGGCAAAGGTGTCTGG GGTACACCTGGACAGGTGTATGATGTGGAGGAGGTGGATGTGAAAGATCCTAACTATGATGATGACCAGGAGAACTGTGTTTATGAAACT GTAGTTTTGCCTTTGGATGAAAGGGCATTTGAGAAGACTTTAACACCAATCATACAGGAATATTTTGAGCATGGAGATACTAATGAAGTT GCGGAAATGTTAAGAGATTTAAATCTTGGTGAAATGAAAAGTGGAGTACCAGTGTTGGCAGTATCCTTAGCATTGGAGGGGAAGGCTAGT CATAGAGAGATGACATCTAAGCTTCTTTCTGACCTTTGTGGGACAGTAATGAGCACAACTGATGTGGAAAAATCATTTGATAAATTGTTG AAAGATCTACCTGAATTAGCACTGGATACTCCTAGAGCACCACAGTTGGTGGGCCAGTTTATTGCTAGAGCTGTTGGAGATGGAATTTTA TGTAATACCTATATTGATAGTTACAAAGGAACTGTAGATTGTGTGCAGGCTAGAGCTGCTCTGGATAAGGCTACCGTGCTTCTGAGTATG TCTAAAGGTGGAAAGCGTAAAGATAGTGTGTGGGGCTCTGGAGGTGGGCAGCAATCTGTCAATCACCTTGTTAAAGAGATTGATATGCTG CTGAAAGAATATTTACTCTCTGGAGACATATCTGAAGCTGAACATTGCCTTAAGGAACTGGAAGTACCTCATTTTCACCATGAGCTTGTA TATGAAGCTATTATAATGGTTTTAGAGTCAACTGGAGAAAGTACATTTAAGATGATTTTGGATTTATTAAAGTCCCTTTGGAAGTCTTCT ACCATTACTGTAGACCAAATGAAAAGAGGTTATGAGAGAATTTACAATGAAATTCCGGACATTAATCTGGATGTCCCACATTCATACTCT GTGCTGGAGCGGTTTGTAGAAGAATGTTTTCAGGCTGGAATAATTTCCAAACAACTCAGAGATCTTTGTCCTTCAAGGGGCAGAAAGCGT TTTGTAAGCGAAGGAGATGGAGGTCGTCTTAAACCAGAGAGCTACTGAATATAAGAACTCTTGCAGTCTTAGATGTTATAAAAATATATA TCTGAATTGTAAGAGTTGTTAGCACAAGTTTTTTTTTTTTTTTTTTTTAAGCACTTGTTTTGGGTACAAGGCATTTCTGACATTTTATAA ACCTACATTTAAGGGGAATTTTTAAAGGAAATGTTTTTTCTTTTTTTTTTGTTTTTCGAGGGGGCAAGGAGGGACAGAAAAGTAACCTCT TCTTAAGTGGAATATTCTAATAAGCTACCTTTTGTAAGTGCCATGTTTATTATCTAATCATTCCAAGTTTTGCATTGATGTCTGACTGCC ACTCCTTTCTTTCAAGGACAGTGTTTTTTGTAGTAAAATCACTGGTTTATACAAAGCTTTATTTAGGGGGTAAAGTTAAGCTGCTAAAAC CCCATGTTGGCTGCTGCTGTTGAGATACTGTGCTTTGGGAGTAAAAAAAGAAAGTTATTTCTTTGTCTTAAAGAATTTTTAAAAAATTAG TCATGAGACTTATTCATCTTTCCAGGGAACATACTGATTGGTCTTAAAAGACTAGACAGTTAAGTAAAAGGTGGCTGGAACATCTATTTT TCTACAAAACTGGAAAAATGAACCTGGTTCTAGAAGAATGTACACCAAAATAAAACATGTGAAGCAGTATTGATTCTTTATTGGGAGTAC ATTTTTTTAGGTCTCTTAAACTTTAATTTCACACAGTAAATTTTGAATCTCATAAGGAAGCATATTTGAACCTAGTCAATTTAATCTTAG TGTTCCCTTGAAAACTTTTTTTCCCTACAAAATTTTAAGTGAAAAATACAATAGTAAATTAAGATTACACTGGGGAAAAAAATGCAGGTA TCACTTTACTCCATTGTTATCTGACCTAGAGCTTAATTAAGTTTTAGAAATATGTAATACCTTCCATCATTCCATCATCCTTAAATTCTG TTACCAAATAATGGCTAATGTTACAAAAAGTTATACTCCAGAGACCCAAAGCTTGACATTTACCTAATGTATGAGAAAATATTACCAATT AACAATAAAGAATGATCATATTTTTAACCTCTTTTACATAGCCTAATAACTCAGCAAGGCCTCAACGTCTGTGCTAATTTAAACTGCCAA ATATTGACTGCAGCAAACAAGAATTATATTCAGAATTTATGAGGGTACTGTTAGGAGTATACTGCTTACAGGTTTAGATATAGTCTGTTA GAATTAAAACCAAGTTTAGTGTTCATATTTACCTCATGGGCTTTATCAAGCCCATATTACCTCAGCTTATATATAGTTACCATTTTTAGG TTTTTAATTGTTTGACACTTGGATGATAAATGCAGTCATTTTATTCTCAAGTGCTTAAAATTAATGTAATTAAAAGCTTAGCTGACTACA GAATAGGTGAGGGTTTCTTAAAAATGAGATTTAAGGGCTGGGCACGGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGG GCGGATCACTTGAGGTTGGGAGTTCATGACCAGCTTGACCAACATGAAGAAACCCTGTCTCTATTAAAAATACAAAAGTAGCCAGGCATG GTGGCGCATGCGTGTAATCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATTGCTTGAACCTGGGAGGCAGAGGTTGCAGTGAGTCGAGAT GGTGCCATTGCTCTCGTTTGGGCAACAAGAGTGAAACTCTTGTCTCAAAAAAAAAAAAAAATGAGGTTTAAGACAGTTTTGTCATTACTG GTGGGATCTGGTCACACAAGATAGCATTAAACGTGACATGGCACATAAAATTGGTTAAAAAATTTTGTTTTTTAATTACGTAATGTAAAA >In-frame_ENST00000400046_ENST00000280154_TCGA-A3-3362-01A_MTUS1_chr8_17532695_-_PDCD4_chr10_112640991_length(amino acids)=495AA_start in transcript=0_stop in transcript=1487 MGCPSSKLCLYSPCAATRREEALKQHKTLSQELVNLRGELDPDNLSDSLFSGDEENAGTEEIKNEINGNWISASSINEARINAKAKRRLR KNSSRDSGRGDSVSDSGSDALRSGLTVPTSPKGRLLDRRSRSGKGRGLPKKGGAGGKGVWGTPGQVYDVEEVDVKDPNYDDDQENCVYET VVLPLDERAFEKTLTPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCGTVMSTTDVEKSFDKLL KDLPELALDTPRAPQLVGQFIARAVGDGILCNTYIDSYKGTVDCVQARAALDKATVLLSMSKGGKRKDSVWGSGGGQQSVNHLVKEIDML LKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQMKRGYERIYNEIPDINLDVPHSYS -------------------------------------------------------------- >In-frame_ENST00000400046_ENST00000393104_TCGA-A3-3362-01A_MTUS1_chr8_17532695_-_PDCD4_chr10_112640991_length(transcript)=3405nt_BP=121nt ATGGGCTGCCCCAGCAGCAAACTGTGCCTCTATTCTCCATGTGCAGCAACAAGGCGGGAGGAAGCACTGAAACAACACAAAACCCTATCT CAAGAACTTGTTAACCTCCGGGGAGAGCTAGATCCTGATAACTTAAGTGACTCTCTCTTTTCCGGTGATGAAGAAAATGCTGGGACTGAG GAAATAAAGAATGAAATAAATGGAAATTGGATTTCAGCATCCTCCATTAACGAAGCTAGAATTAATGCCAAGGCAAAAAGGCGACTAAGG AAAAACTCATCCCGGGACTCTGGCAGAGGCGATTCGGTCAGCGACAGTGGGAGTGACGCCCTTAGAAGTGGATTAACTGTGCCAACCAGT CCAAAGGGAAGGTTGCTGGATAGGCGATCCAGATCTGGGAAAGGAAGGGGACTACCAAAGAAAGGTGGTGCAGGAGGCAAAGGTGTCTGG GGTACACCTGGACAGGTGTATGATGTGGAGGAGGTGGATGTGAAAGATCCTAACTATGATGATGACCAGGAGAACTGTGTTTATGAAACT GTAGTTTTGCCTTTGGATGAAAGGGCATTTGAGAAGACTTTAACACCAATCATACAGGAATATTTTGAGCATGGAGATACTAATGAAGTT GCGGAAATGTTAAGAGATTTAAATCTTGGTGAAATGAAAAGTGGAGTACCAGTGTTGGCAGTATCCTTAGCATTGGAGGGGAAGGCTAGT CATAGAGAGATGACATCTAAGCTTCTTTCTGACCTTTGTGGGACAGTAATGAGCACAACTGATGTGGAAAAATCATTTGATAAATTGTTG AAAGATCTACCTGAATTAGCACTGGATACTCCTAGAGCACCACAGTTGGTGGGCCAGTTTATTGCTAGAGCTGTTGGAGATGGAATTTTA TGTAATACCTATATTGATAGTTACAAAGGAACTGTAGATTGTGTGCAGGCTAGAGCTGCTCTGGATAAGGCTACCGTGCTTCTGAGTATG TCTAAAGGTGGAAAGCGTAAAGATAGTGTGTGGGGCTCTGGAGGTGGGCAGCAATCTGTCAATCACCTTGTTAAAGAGATTGATATGCTG CTGAAAGAATATTTACTCTCTGGAGACATATCTGAAGCTGAACATTGCCTTAAGGAACTGGAAGTACCTCATTTTCACCATGAGCTTGTA TATGAAGCTATTATAATGGTTTTAGAGTCAACTGGAGAAAGTACATTTAAGATGATTTTGGATTTATTAAAGTCCCTTTGGAAGTCTTCT ACCATTACTGTAGACCAAATGAAAAGAGGTTATGAGAGAATTTACAATGAAATTCCGGACATTAATCTGGATGTCCCACATTCATACTCT GTGCTGGAGCGGTTTGTAGAAGAATGTTTTCAGGCTGGAATAATTTCCAAACAACTCAGAGATCTTTGTCCTTCAAGGGGCAGAAAGCGT TTTGTAAGCGAAGGAGATGGAGGTCGTCTTAAACCAGAGAGCTACTGAATATAAGAACTCTTGCAGTCTTAGATGTTATAAAAATATATA TCTGAATTGTAAGAGTTGTTAGCACAAGTTTTTTTTTTTTTTTTTTTTAAGCACTTGTTTTGGGTACAAGGCATTTCTGACATTTTATAA ACCTACATTTAAGGGGAATTTTTAAAGGAAATGTTTTTTCTTTTTTTTTTGTTTTTCGAGGGGGCAAGGAGGGACAGAAAAGTAACCTCT TCTTAAGTGGAATATTCTAATAAGCTACCTTTTGTAAGTGCCATGTTTATTATCTAATCATTCCAAGTTTTGCATTGATGTCTGACTGCC ACTCCTTTCTTTCAAGGACAGTGTTTTTTGTAGTAAAATCACTGGTTTATACAAAGCTTTATTTAGGGGGTAAAGTTAAGCTGCTAAAAC CCCATGTTGGCTGCTGCTGTTGAGATACTGTGCTTTGGGAGTAAAAAAAGAAAGTTATTTCTTTGTCTTAAAGAATTTTTAAAAAATTAG TCATGAGACTTATTCATCTTTCCAGGGAACATACTGATTGGTCTTAAAAGACTAGACAGTTAAGTAAAAGGTGGCTGGAACATCTATTTT TCTACAAAACTGGAAAAATGAACCTGGTTCTAGAAGAATGTACACCAAAATAAAACATGTGAAGCAGTATTGATTCTTTATTGGGAGTAC ATTTTTTTAGGTCTCTTAAACTTTAATTTCACACAGTAAATTTTGAATCTCATAAGGAAGCATATTTGAACCTAGTCAATTTAATCTTAG TGTTCCCTTGAAAACTTTTTTTCCCTACAAAATTTTAAGTGAAAAATACAATAGTAAATTAAGATTACACTGGGGAAAAAAATGCAGGTA TCACTTTACTCCATTGTTATCTGACCTAGAGCTTAATTAAGTTTTAGAAATATGTAATACCTTCCATCATTCCATCATCCTTAAATTCTG TTACCAAATAATGGCTAATGTTACAAAAAGTTATACTCCAGAGACCCAAAGCTTGACATTTACCTAATGTATGAGAAAATATTACCAATT AACAATAAAGAATGATCATATTTTTAACCTCTTTTACATAGCCTAATAACTCAGCAAGGCCTCAACGTCTGTGCTAATTTAAACTGCCAA ATATTGACTGCAGCAAACAAGAATTATATTCAGAATTTATGAGGGTACTGTTAGGAGTATACTGCTTACAGGTTTAGATATAGTCTGTTA GAATTAAAACCAAGTTTAGTGTTCATATTTACCTCATGGGCTTTATCAAGCCCATATTACCTCAGCTTATATATAGTTACCATTTTTAGG TTTTTAATTGTTTGACACTTGGATGATAAATGCAGTCATTTTATTCTCAAGTGCTTAAAATTAATGTAATTAAAAGCTTAGCTGACTACA GAATAGGTGAGGGTTTCTTAAAAATGAGATTTAAGGGCTGGGCACGGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGG GCGGATCACTTGAGGTTGGGAGTTCATGACCAGCTTGACCAACATGAAGAAACCCTGTCTCTATTAAAAATACAAAAGTAGCCAGGCATG GTGGCGCATGCGTGTAATCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATTGCTTGAACCTGGGAGGCAGAGGTTGCAGTGAGTCGAGAT GGTGCCATTGCTCTCGTTTGGGCAACAAGAGTGAAACTCTTGTCTCAAAAAAAAAAAAAAATGAGGTTTAAGACAGTTTTGTCATTACTG GTGGGATCTGGTCACACAAGATAGCATTAAACGTGACATGGCACATAAAATTGGTTAAAAAATTTTGTTTTTTAATTACGTAATGTAAAA >In-frame_ENST00000400046_ENST00000393104_TCGA-A3-3362-01A_MTUS1_chr8_17532695_-_PDCD4_chr10_112640991_length(amino acids)=495AA_start in transcript=0_stop in transcript=1487 MGCPSSKLCLYSPCAATRREEALKQHKTLSQELVNLRGELDPDNLSDSLFSGDEENAGTEEIKNEINGNWISASSINEARINAKAKRRLR KNSSRDSGRGDSVSDSGSDALRSGLTVPTSPKGRLLDRRSRSGKGRGLPKKGGAGGKGVWGTPGQVYDVEEVDVKDPNYDDDQENCVYET VVLPLDERAFEKTLTPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCGTVMSTTDVEKSFDKLL KDLPELALDTPRAPQLVGQFIARAVGDGILCNTYIDSYKGTVDCVQARAALDKATVLLSMSKGGKRKDSVWGSGGGQQSVNHLVKEIDML LKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQMKRGYERIYNEIPDINLDVPHSYS -------------------------------------------------------------- >In-frame_ENST00000297488_ENST00000280154_TCGA-A3-3362-01A_MTUS1_chr8_17532695_-_PDCD4_chr10_112640991_length(transcript)=3981nt_BP=696nt ACAGTGTGATGTGGTTCAGAGGCAGCTTCTAGACCTGCAGGAGGGAGATTGTATTCAGAGGAAGAGCATCATTTTGGCAACATCTGAAAG TGAAAACGGAAGCCAGAAACACTTGGCCAGCCCTGGGGGATTTTTTTCTTCTATGCCTCTCTGGTGGAATGACATTTGCTGTGTAGGCAT CTTTCCTCTGACTGTATTTCTTGGCCTTGAAGAGTACTGAGTTTAAAAAGACAGTATGTGACAGTCCATGGAAATTGCCTCTTCTGTGAA ATCTCGCCACCTGCTCCGAAGACATGTTGTTGTCTCCCAAATTCTCCTTATCCACCATTCACATACGACTGACGGCCAAAGGATTGCTTC GAAACCTTCGACTTCCTTCAGGGTTTAGGAGAAGCACTGTTGTTTTCCACACAGTTGAAAAGAGCAGGCAAAAGAATCCTCGAAGCTTAT GTATCCAGCCACAGACAGCTCCCGATGCGCTGCCCCCTGAGAAAACACTTGAATTGACGCAATATAAAACAAAATGTGAAAACCAAAGTG GATTTATCCTGCAGCTCAAGCAGCTTCTTGCCTGTGGTAATACCAAGTTTGAGGCATTGACAGTTGTGATTCAGCACCTGCTGTCTGAGC GGGAGGAAGCACTGAAACAACACAAAACCCTATCTCAAGAACTTGTTAACCTCCGGGGAGAGCTAGATCCTGATAACTTAAGTGACTCTC TCTTTTCCGGTGATGAAGAAAATGCTGGGACTGAGGAAATAAAGAATGAAATAAATGGAAATTGGATTTCAGCATCCTCCATTAACGAAG CTAGAATTAATGCCAAGGCAAAAAGGCGACTAAGGAAAAACTCATCCCGGGACTCTGGCAGAGGCGATTCGGTCAGCGACAGTGGGAGTG ACGCCCTTAGAAGTGGATTAACTGTGCCAACCAGTCCAAAGGGAAGGTTGCTGGATAGGCGATCCAGATCTGGGAAAGGAAGGGGACTAC CAAAGAAAGGTGGTGCAGGAGGCAAAGGTGTCTGGGGTACACCTGGACAGGTGTATGATGTGGAGGAGGTGGATGTGAAAGATCCTAACT ATGATGATGACCAGGAGAACTGTGTTTATGAAACTGTAGTTTTGCCTTTGGATGAAAGGGCATTTGAGAAGACTTTAACACCAATCATAC AGGAATATTTTGAGCATGGAGATACTAATGAAGTTGCGGAAATGTTAAGAGATTTAAATCTTGGTGAAATGAAAAGTGGAGTACCAGTGT TGGCAGTATCCTTAGCATTGGAGGGGAAGGCTAGTCATAGAGAGATGACATCTAAGCTTCTTTCTGACCTTTGTGGGACAGTAATGAGCA CAACTGATGTGGAAAAATCATTTGATAAATTGTTGAAAGATCTACCTGAATTAGCACTGGATACTCCTAGAGCACCACAGTTGGTGGGCC AGTTTATTGCTAGAGCTGTTGGAGATGGAATTTTATGTAATACCTATATTGATAGTTACAAAGGAACTGTAGATTGTGTGCAGGCTAGAG CTGCTCTGGATAAGGCTACCGTGCTTCTGAGTATGTCTAAAGGTGGAAAGCGTAAAGATAGTGTGTGGGGCTCTGGAGGTGGGCAGCAAT CTGTCAATCACCTTGTTAAAGAGATTGATATGCTGCTGAAAGAATATTTACTCTCTGGAGACATATCTGAAGCTGAACATTGCCTTAAGG AACTGGAAGTACCTCATTTTCACCATGAGCTTGTATATGAAGCTATTATAATGGTTTTAGAGTCAACTGGAGAAAGTACATTTAAGATGA TTTTGGATTTATTAAAGTCCCTTTGGAAGTCTTCTACCATTACTGTAGACCAAATGAAAAGAGGTTATGAGAGAATTTACAATGAAATTC CGGACATTAATCTGGATGTCCCACATTCATACTCTGTGCTGGAGCGGTTTGTAGAAGAATGTTTTCAGGCTGGAATAATTTCCAAACAAC TCAGAGATCTTTGTCCTTCAAGGGGCAGAAAGCGTTTTGTAAGCGAAGGAGATGGAGGTCGTCTTAAACCAGAGAGCTACTGAATATAAG AACTCTTGCAGTCTTAGATGTTATAAAAATATATATCTGAATTGTAAGAGTTGTTAGCACAAGTTTTTTTTTTTTTTTTTTTTAAGCACT TGTTTTGGGTACAAGGCATTTCTGACATTTTATAAACCTACATTTAAGGGGAATTTTTAAAGGAAATGTTTTTTCTTTTTTTTTTGTTTT TCGAGGGGGCAAGGAGGGACAGAAAAGTAACCTCTTCTTAAGTGGAATATTCTAATAAGCTACCTTTTGTAAGTGCCATGTTTATTATCT AATCATTCCAAGTTTTGCATTGATGTCTGACTGCCACTCCTTTCTTTCAAGGACAGTGTTTTTTGTAGTAAAATCACTGGTTTATACAAA GCTTTATTTAGGGGGTAAAGTTAAGCTGCTAAAACCCCATGTTGGCTGCTGCTGTTGAGATACTGTGCTTTGGGAGTAAAAAAAGAAAGT TATTTCTTTGTCTTAAAGAATTTTTAAAAAATTAGTCATGAGACTTATTCATCTTTCCAGGGAACATACTGATTGGTCTTAAAAGACTAG ACAGTTAAGTAAAAGGTGGCTGGAACATCTATTTTTCTACAAAACTGGAAAAATGAACCTGGTTCTAGAAGAATGTACACCAAAATAAAA CATGTGAAGCAGTATTGATTCTTTATTGGGAGTACATTTTTTTAGGTCTCTTAAACTTTAATTTCACACAGTAAATTTTGAATCTCATAA GGAAGCATATTTGAACCTAGTCAATTTAATCTTAGTGTTCCCTTGAAAACTTTTTTTCCCTACAAAATTTTAAGTGAAAAATACAATAGT AAATTAAGATTACACTGGGGAAAAAAATGCAGGTATCACTTTACTCCATTGTTATCTGACCTAGAGCTTAATTAAGTTTTAGAAATATGT AATACCTTCCATCATTCCATCATCCTTAAATTCTGTTACCAAATAATGGCTAATGTTACAAAAAGTTATACTCCAGAGACCCAAAGCTTG ACATTTACCTAATGTATGAGAAAATATTACCAATTAACAATAAAGAATGATCATATTTTTAACCTCTTTTACATAGCCTAATAACTCAGC AAGGCCTCAACGTCTGTGCTAATTTAAACTGCCAAATATTGACTGCAGCAAACAAGAATTATATTCAGAATTTATGAGGGTACTGTTAGG AGTATACTGCTTACAGGTTTAGATATAGTCTGTTAGAATTAAAACCAAGTTTAGTGTTCATATTTACCTCATGGGCTTTATCAAGCCCAT ATTACCTCAGCTTATATATAGTTACCATTTTTAGGTTTTTAATTGTTTGACACTTGGATGATAAATGCAGTCATTTTATTCTCAAGTGCT TAAAATTAATGTAATTAAAAGCTTAGCTGACTACAGAATAGGTGAGGGTTTCTTAAAAATGAGATTTAAGGGCTGGGCACGGTGGCTCAT GCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGCGGATCACTTGAGGTTGGGAGTTCATGACCAGCTTGACCAACATGAAGAAACCC TGTCTCTATTAAAAATACAAAAGTAGCCAGGCATGGTGGCGCATGCGTGTAATCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATTGCTT GAACCTGGGAGGCAGAGGTTGCAGTGAGTCGAGATGGTGCCATTGCTCTCGTTTGGGCAACAAGAGTGAAACTCTTGTCTCAAAAAAAAA AAAAAATGAGGTTTAAGACAGTTTTGTCATTACTGGTGGGATCTGGTCACACAAGATAGCATTAAACGTGACATGGCACATAAAATTGGT TAAAAAATTTTGTTTTTTAATTACGTAATGTAAAAGCCCAACAAACACTTTATGCAAGATTGGAATGTATCTTCAAATTCAGATTTAATA >In-frame_ENST00000297488_ENST00000280154_TCGA-A3-3362-01A_MTUS1_chr8_17532695_-_PDCD4_chr10_112640991_length(amino acids)=589AA_start in transcript=293_stop in transcript=2062 MLLSPKFSLSTIHIRLTAKGLLRNLRLPSGFRRSTVVFHTVEKSRQKNPRSLCIQPQTAPDALPPEKTLELTQYKTKCENQSGFILQLKQ LLACGNTKFEALTVVIQHLLSEREEALKQHKTLSQELVNLRGELDPDNLSDSLFSGDEENAGTEEIKNEINGNWISASSINEARINAKAK RRLRKNSSRDSGRGDSVSDSGSDALRSGLTVPTSPKGRLLDRRSRSGKGRGLPKKGGAGGKGVWGTPGQVYDVEEVDVKDPNYDDDQENC VYETVVLPLDERAFEKTLTPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCGTVMSTTDVEKSF DKLLKDLPELALDTPRAPQLVGQFIARAVGDGILCNTYIDSYKGTVDCVQARAALDKATVLLSMSKGGKRKDSVWGSGGGQQSVNHLVKE IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQMKRGYERIYNEIPDINLDVP -------------------------------------------------------------- >In-frame_ENST00000297488_ENST00000393104_TCGA-A3-3362-01A_MTUS1_chr8_17532695_-_PDCD4_chr10_112640991_length(transcript)=3980nt_BP=696nt ACAGTGTGATGTGGTTCAGAGGCAGCTTCTAGACCTGCAGGAGGGAGATTGTATTCAGAGGAAGAGCATCATTTTGGCAACATCTGAAAG TGAAAACGGAAGCCAGAAACACTTGGCCAGCCCTGGGGGATTTTTTTCTTCTATGCCTCTCTGGTGGAATGACATTTGCTGTGTAGGCAT CTTTCCTCTGACTGTATTTCTTGGCCTTGAAGAGTACTGAGTTTAAAAAGACAGTATGTGACAGTCCATGGAAATTGCCTCTTCTGTGAA ATCTCGCCACCTGCTCCGAAGACATGTTGTTGTCTCCCAAATTCTCCTTATCCACCATTCACATACGACTGACGGCCAAAGGATTGCTTC GAAACCTTCGACTTCCTTCAGGGTTTAGGAGAAGCACTGTTGTTTTCCACACAGTTGAAAAGAGCAGGCAAAAGAATCCTCGAAGCTTAT GTATCCAGCCACAGACAGCTCCCGATGCGCTGCCCCCTGAGAAAACACTTGAATTGACGCAATATAAAACAAAATGTGAAAACCAAAGTG GATTTATCCTGCAGCTCAAGCAGCTTCTTGCCTGTGGTAATACCAAGTTTGAGGCATTGACAGTTGTGATTCAGCACCTGCTGTCTGAGC GGGAGGAAGCACTGAAACAACACAAAACCCTATCTCAAGAACTTGTTAACCTCCGGGGAGAGCTAGATCCTGATAACTTAAGTGACTCTC TCTTTTCCGGTGATGAAGAAAATGCTGGGACTGAGGAAATAAAGAATGAAATAAATGGAAATTGGATTTCAGCATCCTCCATTAACGAAG CTAGAATTAATGCCAAGGCAAAAAGGCGACTAAGGAAAAACTCATCCCGGGACTCTGGCAGAGGCGATTCGGTCAGCGACAGTGGGAGTG ACGCCCTTAGAAGTGGATTAACTGTGCCAACCAGTCCAAAGGGAAGGTTGCTGGATAGGCGATCCAGATCTGGGAAAGGAAGGGGACTAC CAAAGAAAGGTGGTGCAGGAGGCAAAGGTGTCTGGGGTACACCTGGACAGGTGTATGATGTGGAGGAGGTGGATGTGAAAGATCCTAACT ATGATGATGACCAGGAGAACTGTGTTTATGAAACTGTAGTTTTGCCTTTGGATGAAAGGGCATTTGAGAAGACTTTAACACCAATCATAC AGGAATATTTTGAGCATGGAGATACTAATGAAGTTGCGGAAATGTTAAGAGATTTAAATCTTGGTGAAATGAAAAGTGGAGTACCAGTGT TGGCAGTATCCTTAGCATTGGAGGGGAAGGCTAGTCATAGAGAGATGACATCTAAGCTTCTTTCTGACCTTTGTGGGACAGTAATGAGCA CAACTGATGTGGAAAAATCATTTGATAAATTGTTGAAAGATCTACCTGAATTAGCACTGGATACTCCTAGAGCACCACAGTTGGTGGGCC AGTTTATTGCTAGAGCTGTTGGAGATGGAATTTTATGTAATACCTATATTGATAGTTACAAAGGAACTGTAGATTGTGTGCAGGCTAGAG CTGCTCTGGATAAGGCTACCGTGCTTCTGAGTATGTCTAAAGGTGGAAAGCGTAAAGATAGTGTGTGGGGCTCTGGAGGTGGGCAGCAAT CTGTCAATCACCTTGTTAAAGAGATTGATATGCTGCTGAAAGAATATTTACTCTCTGGAGACATATCTGAAGCTGAACATTGCCTTAAGG AACTGGAAGTACCTCATTTTCACCATGAGCTTGTATATGAAGCTATTATAATGGTTTTAGAGTCAACTGGAGAAAGTACATTTAAGATGA TTTTGGATTTATTAAAGTCCCTTTGGAAGTCTTCTACCATTACTGTAGACCAAATGAAAAGAGGTTATGAGAGAATTTACAATGAAATTC CGGACATTAATCTGGATGTCCCACATTCATACTCTGTGCTGGAGCGGTTTGTAGAAGAATGTTTTCAGGCTGGAATAATTTCCAAACAAC TCAGAGATCTTTGTCCTTCAAGGGGCAGAAAGCGTTTTGTAAGCGAAGGAGATGGAGGTCGTCTTAAACCAGAGAGCTACTGAATATAAG AACTCTTGCAGTCTTAGATGTTATAAAAATATATATCTGAATTGTAAGAGTTGTTAGCACAAGTTTTTTTTTTTTTTTTTTTTAAGCACT TGTTTTGGGTACAAGGCATTTCTGACATTTTATAAACCTACATTTAAGGGGAATTTTTAAAGGAAATGTTTTTTCTTTTTTTTTTGTTTT TCGAGGGGGCAAGGAGGGACAGAAAAGTAACCTCTTCTTAAGTGGAATATTCTAATAAGCTACCTTTTGTAAGTGCCATGTTTATTATCT AATCATTCCAAGTTTTGCATTGATGTCTGACTGCCACTCCTTTCTTTCAAGGACAGTGTTTTTTGTAGTAAAATCACTGGTTTATACAAA GCTTTATTTAGGGGGTAAAGTTAAGCTGCTAAAACCCCATGTTGGCTGCTGCTGTTGAGATACTGTGCTTTGGGAGTAAAAAAAGAAAGT TATTTCTTTGTCTTAAAGAATTTTTAAAAAATTAGTCATGAGACTTATTCATCTTTCCAGGGAACATACTGATTGGTCTTAAAAGACTAG ACAGTTAAGTAAAAGGTGGCTGGAACATCTATTTTTCTACAAAACTGGAAAAATGAACCTGGTTCTAGAAGAATGTACACCAAAATAAAA CATGTGAAGCAGTATTGATTCTTTATTGGGAGTACATTTTTTTAGGTCTCTTAAACTTTAATTTCACACAGTAAATTTTGAATCTCATAA GGAAGCATATTTGAACCTAGTCAATTTAATCTTAGTGTTCCCTTGAAAACTTTTTTTCCCTACAAAATTTTAAGTGAAAAATACAATAGT AAATTAAGATTACACTGGGGAAAAAAATGCAGGTATCACTTTACTCCATTGTTATCTGACCTAGAGCTTAATTAAGTTTTAGAAATATGT AATACCTTCCATCATTCCATCATCCTTAAATTCTGTTACCAAATAATGGCTAATGTTACAAAAAGTTATACTCCAGAGACCCAAAGCTTG ACATTTACCTAATGTATGAGAAAATATTACCAATTAACAATAAAGAATGATCATATTTTTAACCTCTTTTACATAGCCTAATAACTCAGC AAGGCCTCAACGTCTGTGCTAATTTAAACTGCCAAATATTGACTGCAGCAAACAAGAATTATATTCAGAATTTATGAGGGTACTGTTAGG AGTATACTGCTTACAGGTTTAGATATAGTCTGTTAGAATTAAAACCAAGTTTAGTGTTCATATTTACCTCATGGGCTTTATCAAGCCCAT ATTACCTCAGCTTATATATAGTTACCATTTTTAGGTTTTTAATTGTTTGACACTTGGATGATAAATGCAGTCATTTTATTCTCAAGTGCT TAAAATTAATGTAATTAAAAGCTTAGCTGACTACAGAATAGGTGAGGGTTTCTTAAAAATGAGATTTAAGGGCTGGGCACGGTGGCTCAT GCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGCGGATCACTTGAGGTTGGGAGTTCATGACCAGCTTGACCAACATGAAGAAACCC TGTCTCTATTAAAAATACAAAAGTAGCCAGGCATGGTGGCGCATGCGTGTAATCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATTGCTT GAACCTGGGAGGCAGAGGTTGCAGTGAGTCGAGATGGTGCCATTGCTCTCGTTTGGGCAACAAGAGTGAAACTCTTGTCTCAAAAAAAAA AAAAAATGAGGTTTAAGACAGTTTTGTCATTACTGGTGGGATCTGGTCACACAAGATAGCATTAAACGTGACATGGCACATAAAATTGGT TAAAAAATTTTGTTTTTTAATTACGTAATGTAAAAGCCCAACAAACACTTTATGCAAGATTGGAATGTATCTTCAAATTCAGATTTAATA >In-frame_ENST00000297488_ENST00000393104_TCGA-A3-3362-01A_MTUS1_chr8_17532695_-_PDCD4_chr10_112640991_length(amino acids)=589AA_start in transcript=293_stop in transcript=2062 MLLSPKFSLSTIHIRLTAKGLLRNLRLPSGFRRSTVVFHTVEKSRQKNPRSLCIQPQTAPDALPPEKTLELTQYKTKCENQSGFILQLKQ LLACGNTKFEALTVVIQHLLSEREEALKQHKTLSQELVNLRGELDPDNLSDSLFSGDEENAGTEEIKNEINGNWISASSINEARINAKAK RRLRKNSSRDSGRGDSVSDSGSDALRSGLTVPTSPKGRLLDRRSRSGKGRGLPKKGGAGGKGVWGTPGQVYDVEEVDVKDPNYDDDQENC VYETVVLPLDERAFEKTLTPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCGTVMSTTDVEKSF DKLLKDLPELALDTPRAPQLVGQFIARAVGDGILCNTYIDSYKGTVDCVQARAALDKATVLLSMSKGGKRKDSVWGSGGGQQSVNHLVKE IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQMKRGYERIYNEIPDINLDVP -------------------------------------------------------------- |
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Fusion Gene PPI Analysis for MTUS1-PDCD4 |
Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in |
Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
Hgene | Hgene's interactors | Tgene | Tgene's interactors |
- Retained PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
- Lost PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
- Retained PPIs, but lost function due to frame-shift fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Related Drugs for MTUS1-PDCD4 |
Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.8 2021-05-08) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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Related Diseases for MTUS1-PDCD4 |
Diseases associated with fusion partners. (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Hgene | MTUS1 | C2239176 | Liver carcinoma | 1 | UNIPROT |
Tgene | PDCD4 | C0007621 | Neoplastic Cell Transformation | 2 | CTD_human |
Tgene | PDCD4 | C0024121 | Lung Neoplasms | 1 | CTD_human |
Tgene | PDCD4 | C0027626 | Neoplasm Invasiveness | 1 | CTD_human |
Tgene | PDCD4 | C0242379 | Malignant neoplasm of lung | 1 | CTD_human |