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Fusion Gene Summary | |
Fusion Gene ORF analysis | |
Fusion Genomic Features | |
Fusion Protein Features | |
Fusion Gene Sequence | |
Fusion Gene PPI analysis | |
Related Drugs | |
Related Diseases |
Fusion gene:APLP2-SPCS2 (FusionGDB2 ID:5572) |
Fusion Gene Summary for APLP2-SPCS2 |
Fusion gene summary |
Fusion gene information | Fusion gene name: APLP2-SPCS2 | Fusion gene ID: 5572 | Hgene | Tgene | Gene symbol | APLP2 | SPCS2 | Gene ID | 334 | 9789 |
Gene name | amyloid beta precursor like protein 2 | signal peptidase complex subunit 2 | |
Synonyms | APLP-2|APPH|APPL2|CDEBP | - | |
Cytomap | 11q24.3 | 11q13.4 | |
Type of gene | protein-coding | protein-coding | |
Description | amyloid-like protein 2CDEI box-binding proteinamyloid beta (A4) precursor-like protein 2amyloid precursor protein homolog HSD-2testicular tissue protein Li 23 | signal peptidase complex subunit 2SPase 25 kDa subunitmicrosomal signal peptidase 25 kDa subunitsignal peptidase 25kDa subunitsignal peptidase complex subunit 2 homolog | |
Modification date | 20200313 | 20200313 | |
UniProtAcc | Q06481 | . | |
Ensembl transtripts involved in fusion gene | ENST00000532456, ENST00000539648, ENST00000528499, ENST00000263574, ENST00000345598, ENST00000338167, ENST00000278756, ENST00000543137, | ENST00000263672, ENST00000530257, ENST00000526361, ENST00000528265, | |
Fusion gene scores | * DoF score | 32 X 25 X 10=8000 | 5 X 5 X 5=125 |
# samples | 36 | 6 | |
** MAII score | log2(36/8000*10)=-4.47393118833241 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(6/125*10)=-1.05889368905357 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
Context | PubMed: APLP2 [Title/Abstract] AND SPCS2 [Title/Abstract] AND fusion [Title/Abstract] | ||
Most frequent breakpoint | APLP2(129997735)-SPCS2(74676079), # samples:2 | ||
Anticipated loss of major functional domain due to fusion event. |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
Partner | Gene | GO ID | GO term | PubMed ID |
Fusion gene breakpoints across APLP2 (5'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
Fusion gene breakpoints across SPCS2 (3'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Source | Disease | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
ChimerDB4 | LUAD | TCGA-44-7669-01A | APLP2 | chr11 | 129997735 | + | SPCS2 | chr11 | 74676079 | + |
ChimerDB4 | LUAD | TCGA-44-7669-01A | APLP2 | chr11 | 129997735 | + | SPCS2 | chr11 | 74676079 | + |
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Fusion Gene ORF analysis for APLP2-SPCS2 |
Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
intron-3CDS | ENST00000532456 | ENST00000263672 | APLP2 | chr11 | 129997735 | + | SPCS2 | chr11 | 74676079 | + |
intron-3CDS | ENST00000532456 | ENST00000530257 | APLP2 | chr11 | 129997735 | + | SPCS2 | chr11 | 74676079 | + |
intron-5UTR | ENST00000532456 | ENST00000526361 | APLP2 | chr11 | 129997735 | + | SPCS2 | chr11 | 74676079 | + |
intron-intron | ENST00000532456 | ENST00000528265 | APLP2 | chr11 | 129997735 | + | SPCS2 | chr11 | 74676079 | + |
In-frame | ENST00000539648 | ENST00000263672 | APLP2 | chr11 | 129997735 | + | SPCS2 | chr11 | 74676079 | + |
In-frame | ENST00000539648 | ENST00000530257 | APLP2 | chr11 | 129997735 | + | SPCS2 | chr11 | 74676079 | + |
5CDS-5UTR | ENST00000539648 | ENST00000526361 | APLP2 | chr11 | 129997735 | + | SPCS2 | chr11 | 74676079 | + |
5CDS-intron | ENST00000539648 | ENST00000528265 | APLP2 | chr11 | 129997735 | + | SPCS2 | chr11 | 74676079 | + |
In-frame | ENST00000528499 | ENST00000263672 | APLP2 | chr11 | 129997735 | + | SPCS2 | chr11 | 74676079 | + |
In-frame | ENST00000528499 | ENST00000530257 | APLP2 | chr11 | 129997735 | + | SPCS2 | chr11 | 74676079 | + |
5CDS-5UTR | ENST00000528499 | ENST00000526361 | APLP2 | chr11 | 129997735 | + | SPCS2 | chr11 | 74676079 | + |
5CDS-intron | ENST00000528499 | ENST00000528265 | APLP2 | chr11 | 129997735 | + | SPCS2 | chr11 | 74676079 | + |
In-frame | ENST00000263574 | ENST00000263672 | APLP2 | chr11 | 129997735 | + | SPCS2 | chr11 | 74676079 | + |
In-frame | ENST00000263574 | ENST00000530257 | APLP2 | chr11 | 129997735 | + | SPCS2 | chr11 | 74676079 | + |
5CDS-5UTR | ENST00000263574 | ENST00000526361 | APLP2 | chr11 | 129997735 | + | SPCS2 | chr11 | 74676079 | + |
5CDS-intron | ENST00000263574 | ENST00000528265 | APLP2 | chr11 | 129997735 | + | SPCS2 | chr11 | 74676079 | + |
In-frame | ENST00000345598 | ENST00000263672 | APLP2 | chr11 | 129997735 | + | SPCS2 | chr11 | 74676079 | + |
In-frame | ENST00000345598 | ENST00000530257 | APLP2 | chr11 | 129997735 | + | SPCS2 | chr11 | 74676079 | + |
5CDS-5UTR | ENST00000345598 | ENST00000526361 | APLP2 | chr11 | 129997735 | + | SPCS2 | chr11 | 74676079 | + |
5CDS-intron | ENST00000345598 | ENST00000528265 | APLP2 | chr11 | 129997735 | + | SPCS2 | chr11 | 74676079 | + |
In-frame | ENST00000338167 | ENST00000263672 | APLP2 | chr11 | 129997735 | + | SPCS2 | chr11 | 74676079 | + |
In-frame | ENST00000338167 | ENST00000530257 | APLP2 | chr11 | 129997735 | + | SPCS2 | chr11 | 74676079 | + |
5CDS-5UTR | ENST00000338167 | ENST00000526361 | APLP2 | chr11 | 129997735 | + | SPCS2 | chr11 | 74676079 | + |
5CDS-intron | ENST00000338167 | ENST00000528265 | APLP2 | chr11 | 129997735 | + | SPCS2 | chr11 | 74676079 | + |
In-frame | ENST00000278756 | ENST00000263672 | APLP2 | chr11 | 129997735 | + | SPCS2 | chr11 | 74676079 | + |
In-frame | ENST00000278756 | ENST00000530257 | APLP2 | chr11 | 129997735 | + | SPCS2 | chr11 | 74676079 | + |
5CDS-5UTR | ENST00000278756 | ENST00000526361 | APLP2 | chr11 | 129997735 | + | SPCS2 | chr11 | 74676079 | + |
5CDS-intron | ENST00000278756 | ENST00000528265 | APLP2 | chr11 | 129997735 | + | SPCS2 | chr11 | 74676079 | + |
In-frame | ENST00000543137 | ENST00000263672 | APLP2 | chr11 | 129997735 | + | SPCS2 | chr11 | 74676079 | + |
In-frame | ENST00000543137 | ENST00000530257 | APLP2 | chr11 | 129997735 | + | SPCS2 | chr11 | 74676079 | + |
5CDS-5UTR | ENST00000543137 | ENST00000526361 | APLP2 | chr11 | 129997735 | + | SPCS2 | chr11 | 74676079 | + |
5CDS-intron | ENST00000543137 | ENST00000528265 | APLP2 | chr11 | 129997735 | + | SPCS2 | chr11 | 74676079 | + |
ORFfinder result based on the fusion transcript sequence of in-frame fusion genes. |
Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | Seq length (transcript) | BP loci (transcript) | Predicted start (transcript) | Predicted stop (transcript) | Seq length (amino acids) |
ENST00000539648 | APLP2 | chr11 | 129997735 | + | ENST00000263672 | SPCS2 | chr11 | 74676079 | + | 3469 | 914 | 212 | 1480 | 422 |
ENST00000539648 | APLP2 | chr11 | 129997735 | + | ENST00000530257 | SPCS2 | chr11 | 74676079 | + | 1387 | 914 | 212 | 1273 | 353 |
ENST00000528499 | APLP2 | chr11 | 129997735 | + | ENST00000263672 | SPCS2 | chr11 | 74676079 | + | 3767 | 1212 | 84 | 1778 | 564 |
ENST00000528499 | APLP2 | chr11 | 129997735 | + | ENST00000530257 | SPCS2 | chr11 | 74676079 | + | 1685 | 1212 | 84 | 1571 | 495 |
ENST00000263574 | APLP2 | chr11 | 129997735 | + | ENST00000263672 | SPCS2 | chr11 | 74676079 | + | 3923 | 1368 | 72 | 1934 | 620 |
ENST00000263574 | APLP2 | chr11 | 129997735 | + | ENST00000530257 | SPCS2 | chr11 | 74676079 | + | 1841 | 1368 | 72 | 1727 | 551 |
ENST00000345598 | APLP2 | chr11 | 129997735 | + | ENST00000263672 | SPCS2 | chr11 | 74676079 | + | 3226 | 671 | 62 | 1237 | 391 |
ENST00000345598 | APLP2 | chr11 | 129997735 | + | ENST00000530257 | SPCS2 | chr11 | 74676079 | + | 1144 | 671 | 62 | 1030 | 322 |
ENST00000338167 | APLP2 | chr11 | 129997735 | + | ENST00000263672 | SPCS2 | chr11 | 74676079 | + | 3908 | 1353 | 57 | 1919 | 620 |
ENST00000338167 | APLP2 | chr11 | 129997735 | + | ENST00000530257 | SPCS2 | chr11 | 74676079 | + | 1826 | 1353 | 57 | 1712 | 551 |
ENST00000278756 | APLP2 | chr11 | 129997735 | + | ENST00000263672 | SPCS2 | chr11 | 74676079 | + | 3926 | 1371 | 45 | 1937 | 630 |
ENST00000278756 | APLP2 | chr11 | 129997735 | + | ENST00000530257 | SPCS2 | chr11 | 74676079 | + | 1844 | 1371 | 45 | 1730 | 561 |
ENST00000543137 | APLP2 | chr11 | 129997735 | + | ENST00000263672 | SPCS2 | chr11 | 74676079 | + | 3926 | 1371 | 45 | 1937 | 630 |
ENST00000543137 | APLP2 | chr11 | 129997735 | + | ENST00000530257 | SPCS2 | chr11 | 74676079 | + | 1844 | 1371 | 45 | 1730 | 561 |
DeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated. |
Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | No-coding score | Coding score |
ENST00000539648 | ENST00000263672 | APLP2 | chr11 | 129997735 | + | SPCS2 | chr11 | 74676079 | + | 0.000103053 | 0.9998969 |
ENST00000539648 | ENST00000530257 | APLP2 | chr11 | 129997735 | + | SPCS2 | chr11 | 74676079 | + | 0.000589086 | 0.99941087 |
ENST00000528499 | ENST00000263672 | APLP2 | chr11 | 129997735 | + | SPCS2 | chr11 | 74676079 | + | 0.000186951 | 0.999813 |
ENST00000528499 | ENST00000530257 | APLP2 | chr11 | 129997735 | + | SPCS2 | chr11 | 74676079 | + | 0.001239467 | 0.9987606 |
ENST00000263574 | ENST00000263672 | APLP2 | chr11 | 129997735 | + | SPCS2 | chr11 | 74676079 | + | 0.000219329 | 0.9997807 |
ENST00000263574 | ENST00000530257 | APLP2 | chr11 | 129997735 | + | SPCS2 | chr11 | 74676079 | + | 0.001792653 | 0.99820733 |
ENST00000345598 | ENST00000263672 | APLP2 | chr11 | 129997735 | + | SPCS2 | chr11 | 74676079 | + | 0.000343257 | 0.9996568 |
ENST00000345598 | ENST00000530257 | APLP2 | chr11 | 129997735 | + | SPCS2 | chr11 | 74676079 | + | 0.00348125 | 0.99651873 |
ENST00000338167 | ENST00000263672 | APLP2 | chr11 | 129997735 | + | SPCS2 | chr11 | 74676079 | + | 0.000224714 | 0.99977535 |
ENST00000338167 | ENST00000530257 | APLP2 | chr11 | 129997735 | + | SPCS2 | chr11 | 74676079 | + | 0.001871861 | 0.9981281 |
ENST00000278756 | ENST00000263672 | APLP2 | chr11 | 129997735 | + | SPCS2 | chr11 | 74676079 | + | 0.000283086 | 0.99971694 |
ENST00000278756 | ENST00000530257 | APLP2 | chr11 | 129997735 | + | SPCS2 | chr11 | 74676079 | + | 0.002044894 | 0.9979551 |
ENST00000543137 | ENST00000263672 | APLP2 | chr11 | 129997735 | + | SPCS2 | chr11 | 74676079 | + | 0.000283086 | 0.99971694 |
ENST00000543137 | ENST00000530257 | APLP2 | chr11 | 129997735 | + | SPCS2 | chr11 | 74676079 | + | 0.002044894 | 0.9979551 |
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Fusion Genomic Features for APLP2-SPCS2 |
FusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints. |
Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | 1-p | p (fusion gene breakpoint) |
APLP2 | chr11 | 129997735 | + | SPCS2 | chr11 | 74676078 | + | 0.000494407 | 0.99950564 |
APLP2 | chr11 | 129997735 | + | SPCS2 | chr11 | 74676078 | + | 0.000494407 | 0.99950564 |
Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page. |
Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page. |
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Fusion Protein Features for APLP2-SPCS2 |
Go to FGviewer for the breakpoints of chr11:129997735-chr11:74676079 - FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels. |
Main function of each fusion partner protein. (from UniProt) |
Hgene | Tgene |
APLP2 | . |
FUNCTION: May play a role in the regulation of hemostasis. The soluble form may have inhibitory properties towards coagulation factors. May interact with cellular G-protein signaling pathways. May bind to the DNA 5'-GTCACATG-3'(CDEI box). Inhibits trypsin, chymotrypsin, plasmin, factor XIA and plasma and glandular kallikrein. Modulates the Cu/Zn nitric oxide-catalyzed autodegradation of GPC1 heparan sulfate side chains in fibroblasts (By similarity). {ECO:0000250, ECO:0000269|PubMed:8307156}. | FUNCTION: Might normally function as a transcriptional repressor. EWS-fusion-proteins (EFPS) may play a role in the tumorigenic process. They may disturb gene expression by mimicking, or interfering with the normal function of CTD-POLII within the transcription initiation complex. They may also contribute to an aberrant activation of the fusion protein target genes. |
Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | APLP2 | chr11:129997735 | chr11:74676079 | ENST00000263574 | + | 9 | 18 | 215_231 | 432.0 | 764.0 | Compositional bias | Note=Poly-Glu |
Hgene | APLP2 | chr11:129997735 | chr11:74676079 | ENST00000263574 | + | 9 | 18 | 215_280 | 432.0 | 764.0 | Compositional bias | Note=Asp/Glu-rich (highly acidic) |
Hgene | APLP2 | chr11:129997735 | chr11:74676079 | ENST00000278756 | + | 9 | 17 | 215_231 | 442.0 | 762.0 | Compositional bias | Note=Poly-Glu |
Hgene | APLP2 | chr11:129997735 | chr11:74676079 | ENST00000278756 | + | 9 | 17 | 215_280 | 442.0 | 762.0 | Compositional bias | Note=Asp/Glu-rich (highly acidic) |
Hgene | APLP2 | chr11:129997735 | chr11:74676079 | ENST00000338167 | + | 9 | 17 | 215_231 | 432.0 | 752.0 | Compositional bias | Note=Poly-Glu |
Hgene | APLP2 | chr11:129997735 | chr11:74676079 | ENST00000338167 | + | 9 | 17 | 215_280 | 432.0 | 752.0 | Compositional bias | Note=Asp/Glu-rich (highly acidic) |
Hgene | APLP2 | chr11:129997735 | chr11:74676079 | ENST00000528499 | + | 8 | 16 | 215_231 | 376.0 | 696.0 | Compositional bias | Note=Poly-Glu |
Hgene | APLP2 | chr11:129997735 | chr11:74676079 | ENST00000528499 | + | 8 | 16 | 215_280 | 376.0 | 696.0 | Compositional bias | Note=Asp/Glu-rich (highly acidic) |
Hgene | APLP2 | chr11:129997735 | chr11:74676079 | ENST00000263574 | + | 9 | 18 | 306_364 | 432.0 | 764.0 | Domain | BPTI/Kunitz inhibitor |
Hgene | APLP2 | chr11:129997735 | chr11:74676079 | ENST00000263574 | + | 9 | 18 | 46_205 | 432.0 | 764.0 | Domain | E1 |
Hgene | APLP2 | chr11:129997735 | chr11:74676079 | ENST00000278756 | + | 9 | 17 | 306_364 | 442.0 | 762.0 | Domain | BPTI/Kunitz inhibitor |
Hgene | APLP2 | chr11:129997735 | chr11:74676079 | ENST00000278756 | + | 9 | 17 | 46_205 | 442.0 | 762.0 | Domain | E1 |
Hgene | APLP2 | chr11:129997735 | chr11:74676079 | ENST00000338167 | + | 9 | 17 | 306_364 | 432.0 | 752.0 | Domain | BPTI/Kunitz inhibitor |
Hgene | APLP2 | chr11:129997735 | chr11:74676079 | ENST00000338167 | + | 9 | 17 | 46_205 | 432.0 | 752.0 | Domain | E1 |
Hgene | APLP2 | chr11:129997735 | chr11:74676079 | ENST00000345598 | + | 5 | 13 | 46_205 | 203.0 | 523.0 | Domain | E1 |
Hgene | APLP2 | chr11:129997735 | chr11:74676079 | ENST00000528499 | + | 8 | 16 | 306_364 | 376.0 | 696.0 | Domain | BPTI/Kunitz inhibitor |
Hgene | APLP2 | chr11:129997735 | chr11:74676079 | ENST00000528499 | + | 8 | 16 | 46_205 | 376.0 | 696.0 | Domain | E1 |
Hgene | APLP2 | chr11:129997735 | chr11:74676079 | ENST00000263574 | + | 9 | 18 | 147_205 | 432.0 | 764.0 | Region | CuBD subdomain |
Hgene | APLP2 | chr11:129997735 | chr11:74676079 | ENST00000263574 | + | 9 | 18 | 46_139 | 432.0 | 764.0 | Region | GFLD subdomain |
Hgene | APLP2 | chr11:129997735 | chr11:74676079 | ENST00000278756 | + | 9 | 17 | 147_205 | 442.0 | 762.0 | Region | CuBD subdomain |
Hgene | APLP2 | chr11:129997735 | chr11:74676079 | ENST00000278756 | + | 9 | 17 | 46_139 | 442.0 | 762.0 | Region | GFLD subdomain |
Hgene | APLP2 | chr11:129997735 | chr11:74676079 | ENST00000338167 | + | 9 | 17 | 147_205 | 432.0 | 752.0 | Region | CuBD subdomain |
Hgene | APLP2 | chr11:129997735 | chr11:74676079 | ENST00000338167 | + | 9 | 17 | 46_139 | 432.0 | 752.0 | Region | GFLD subdomain |
Hgene | APLP2 | chr11:129997735 | chr11:74676079 | ENST00000345598 | + | 5 | 13 | 147_205 | 203.0 | 523.0 | Region | CuBD subdomain |
Hgene | APLP2 | chr11:129997735 | chr11:74676079 | ENST00000345598 | + | 5 | 13 | 46_139 | 203.0 | 523.0 | Region | GFLD subdomain |
Hgene | APLP2 | chr11:129997735 | chr11:74676079 | ENST00000528499 | + | 8 | 16 | 147_205 | 376.0 | 696.0 | Region | CuBD subdomain |
Hgene | APLP2 | chr11:129997735 | chr11:74676079 | ENST00000528499 | + | 8 | 16 | 46_139 | 376.0 | 696.0 | Region | GFLD subdomain |
Tgene | SPCS2 | chr11:129997735 | chr11:74676079 | ENST00000263672 | 0 | 5 | 108_111 | 38.0 | 227.0 | Topological domain | Lumenal | |
Tgene | SPCS2 | chr11:129997735 | chr11:74676079 | ENST00000263672 | 0 | 5 | 133_226 | 38.0 | 227.0 | Topological domain | Cytoplasmic | |
Tgene | SPCS2 | chr11:129997735 | chr11:74676079 | ENST00000263672 | 0 | 5 | 112_132 | 38.0 | 227.0 | Transmembrane | Helical | |
Tgene | SPCS2 | chr11:129997735 | chr11:74676079 | ENST00000263672 | 0 | 5 | 87_107 | 38.0 | 227.0 | Transmembrane | Helical |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | APLP2 | chr11:129997735 | chr11:74676079 | ENST00000345598 | + | 5 | 13 | 215_231 | 203.0 | 523.0 | Compositional bias | Note=Poly-Glu |
Hgene | APLP2 | chr11:129997735 | chr11:74676079 | ENST00000345598 | + | 5 | 13 | 215_280 | 203.0 | 523.0 | Compositional bias | Note=Asp/Glu-rich (highly acidic) |
Hgene | APLP2 | chr11:129997735 | chr11:74676079 | ENST00000263574 | + | 9 | 18 | 373_564 | 432.0 | 764.0 | Domain | E2 |
Hgene | APLP2 | chr11:129997735 | chr11:74676079 | ENST00000278756 | + | 9 | 17 | 373_564 | 442.0 | 762.0 | Domain | E2 |
Hgene | APLP2 | chr11:129997735 | chr11:74676079 | ENST00000338167 | + | 9 | 17 | 373_564 | 432.0 | 752.0 | Domain | E2 |
Hgene | APLP2 | chr11:129997735 | chr11:74676079 | ENST00000345598 | + | 5 | 13 | 306_364 | 203.0 | 523.0 | Domain | BPTI/Kunitz inhibitor |
Hgene | APLP2 | chr11:129997735 | chr11:74676079 | ENST00000345598 | + | 5 | 13 | 373_564 | 203.0 | 523.0 | Domain | E2 |
Hgene | APLP2 | chr11:129997735 | chr11:74676079 | ENST00000528499 | + | 8 | 16 | 373_564 | 376.0 | 696.0 | Domain | E2 |
Hgene | APLP2 | chr11:129997735 | chr11:74676079 | ENST00000263574 | + | 9 | 18 | 750_755 | 432.0 | 764.0 | Motif | Note=NPXY motif |
Hgene | APLP2 | chr11:129997735 | chr11:74676079 | ENST00000278756 | + | 9 | 17 | 750_755 | 442.0 | 762.0 | Motif | Note=NPXY motif |
Hgene | APLP2 | chr11:129997735 | chr11:74676079 | ENST00000338167 | + | 9 | 17 | 750_755 | 432.0 | 752.0 | Motif | Note=NPXY motif |
Hgene | APLP2 | chr11:129997735 | chr11:74676079 | ENST00000345598 | + | 5 | 13 | 750_755 | 203.0 | 523.0 | Motif | Note=NPXY motif |
Hgene | APLP2 | chr11:129997735 | chr11:74676079 | ENST00000528499 | + | 8 | 16 | 750_755 | 376.0 | 696.0 | Motif | Note=NPXY motif |
Hgene | APLP2 | chr11:129997735 | chr11:74676079 | ENST00000263574 | + | 9 | 18 | 32_692 | 432.0 | 764.0 | Topological domain | Extracellular |
Hgene | APLP2 | chr11:129997735 | chr11:74676079 | ENST00000263574 | + | 9 | 18 | 717_763 | 432.0 | 764.0 | Topological domain | Cytoplasmic |
Hgene | APLP2 | chr11:129997735 | chr11:74676079 | ENST00000278756 | + | 9 | 17 | 32_692 | 442.0 | 762.0 | Topological domain | Extracellular |
Hgene | APLP2 | chr11:129997735 | chr11:74676079 | ENST00000278756 | + | 9 | 17 | 717_763 | 442.0 | 762.0 | Topological domain | Cytoplasmic |
Hgene | APLP2 | chr11:129997735 | chr11:74676079 | ENST00000338167 | + | 9 | 17 | 32_692 | 432.0 | 752.0 | Topological domain | Extracellular |
Hgene | APLP2 | chr11:129997735 | chr11:74676079 | ENST00000338167 | + | 9 | 17 | 717_763 | 432.0 | 752.0 | Topological domain | Cytoplasmic |
Hgene | APLP2 | chr11:129997735 | chr11:74676079 | ENST00000345598 | + | 5 | 13 | 32_692 | 203.0 | 523.0 | Topological domain | Extracellular |
Hgene | APLP2 | chr11:129997735 | chr11:74676079 | ENST00000345598 | + | 5 | 13 | 717_763 | 203.0 | 523.0 | Topological domain | Cytoplasmic |
Hgene | APLP2 | chr11:129997735 | chr11:74676079 | ENST00000528499 | + | 8 | 16 | 32_692 | 376.0 | 696.0 | Topological domain | Extracellular |
Hgene | APLP2 | chr11:129997735 | chr11:74676079 | ENST00000528499 | + | 8 | 16 | 717_763 | 376.0 | 696.0 | Topological domain | Cytoplasmic |
Hgene | APLP2 | chr11:129997735 | chr11:74676079 | ENST00000263574 | + | 9 | 18 | 693_716 | 432.0 | 764.0 | Transmembrane | Helical |
Hgene | APLP2 | chr11:129997735 | chr11:74676079 | ENST00000278756 | + | 9 | 17 | 693_716 | 442.0 | 762.0 | Transmembrane | Helical |
Hgene | APLP2 | chr11:129997735 | chr11:74676079 | ENST00000338167 | + | 9 | 17 | 693_716 | 432.0 | 752.0 | Transmembrane | Helical |
Hgene | APLP2 | chr11:129997735 | chr11:74676079 | ENST00000345598 | + | 5 | 13 | 693_716 | 203.0 | 523.0 | Transmembrane | Helical |
Hgene | APLP2 | chr11:129997735 | chr11:74676079 | ENST00000528499 | + | 8 | 16 | 693_716 | 376.0 | 696.0 | Transmembrane | Helical |
Tgene | SPCS2 | chr11:129997735 | chr11:74676079 | ENST00000263672 | 0 | 5 | 2_86 | 38.0 | 227.0 | Topological domain | Cytoplasmic |
Top |
Fusion Gene Sequence for APLP2-SPCS2 |
For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones. |
>In-frame_ENST00000539648_ENST00000263672_TCGA-44-7669-01A_APLP2_chr11_129997735_+_SPCS2_chr11_74676079_length(transcript)=3469nt_BP=914nt AGATGCTTCTGGGTCGCGGTGTGCTAAGCGAGGAGTCCGAGTGTGTGAGCTTGAGAGCCGCGCGCTAGAGCGACCCGGCGAGGGATGGCG GCCACCGGGACCGCGGCCGCCGCAGCCACGGGCAGGCTCCTGCTTCTGCTGCTGGTGGGGCTCACGGCGCCTGCCTTGGCGCTGGCCGGC TACATCGAGTGGGTGAATTTGTAAGTGATGTCCTGCTAGTTCCAGAAAAGTGCCAGTTTTTCCACAAAGAGCGGATGGAGGTGTGTGAGA ATCACCAGCACTGGCACACGGTAGTCAAAGAGGCATGTCTGACTCAGGGAATGACCTTATATAGCTACGGCATGCTGCTCCCATGTGGGG TAGACCAGTTCCATGGCACTGAATATGTGTGCTGCCCTCAGACAAAGATTATTGGATCTGTGTCAAAAGAAGAGGAAGAGGAAGATGAAG AGGAAGAGGAAGAGGAAGATGAAGAGGAAGACTATGATGTTTATAAAAGTGAATTTCCTACTGAAGCAGATCTGGAAGACTTCACAGAAG CAGCTGTGGATGAGGATGATGAGGATGAGGAAGAAGGGGAGGAAGTGGTGGAGGACCGAGATTACTACTATGACACCTTCAAAGGAGATG ACTACAATGAGGAGAATCCTACTGAACCCGGCAGCGACGGCACCATGTCAGACAAGGAAATTACTCATGATGTCAAAGTTCCTCCAACTC CTCTGCCAACCAATGATGTTGATGTGTATTTCGAGACCTCTGCAGATGATAATGAGCATGCTCGCTTCCAGAAGGCTAAGGAGCAGCTGG AGATTCGGCACCGCAACCGAATGGACAGGGTAAAGAAGGAATGGGAAGAGGCAGAGCTTCAAGCTAAGAACCTCCCCAAAGCAGAGAGGC AGACTCTGATTCAGTGGAAGATAGATGATAAGCCTGTAAAAATTGACAAGTGGGATGGATCAGCTGTGAAAAACTCTTTGGATGATTCTG CCAAAAAGGTACTTCTGGAAAAATACAAATATGTGGAGAATTTTGGTCTAATTGATGGTCGCCTCACCATCTGTACAATCTCCTGTTTCT TTGCCATAGTGGCTTTGATTTGGGATTATATGCACCCCTTTCCAGAGTCCAAACCCGTTTTGGCTTTGTGTGTCATATCCTATTTTGTGA TGATGGGGATTCTGACCATTTATACCTCATATAAGGAGAAGAGCATCTTTCTCGTGGCCCACAGGAAAGATCCTACAGGAATGGATCCTG ATGATATTTGGCAGCTGTCCTCCAGTCTTAAAAGGTTTGATGACAAATACACCTTGAAGCTGACCTTCATCAGTGGGAGAACAAAGCAGC AGCGGGAAGCCGAGTTCACAAAGTCCATTGCTAAGTTTTTTGACCACAGTGGGACACTGGTCATGGATGCATATGAGCCTGAAATATCCA GGCTCCATGACAGTCTTGCCATAGAAAGAAAAATAAAGTAGCCAATTCTAAAAGTAGCCCTCTTTCTCCTGGATCTTGCTGAATTAGTGG CTTGGGGGGTGGGGGAGATAAAAAGAACTTAAAATGGGTAAAGTAAGAAATGTTAAAAAGTCCCTGTTTTGTCCTGAAATTTTAGTCTAT TCTGGGTAAATAGGATTTTCTGACACAGATATGAGAAGTTGTAGCTCTGATGTCTAGCTGTAGTCTCCTTGATCTGCTGATTGCATTATT TTAATTTGCTTTTCTGGGAAAGCAGTTTTGCTAAAAGCTGTACAGACTTTTTCTTTTGTACCTAGCAGTACTTTATATAGTATAGCTTTG GGCCATGTAGCATTTTAAGACTCAATTTTAAAAAATTATTAATCTGTTGCTGACTCTTAATTCCTATTTCAATATGTGTTTCCTTGAAGA ATTCAGGATACAACTTCTTGTGTATGACAGCTTTCCTTCACACACTATTTTTGTGGGTGTGTATATATCTGATTTGGGAAGAATTTAAAA AACACATAGCTTTTTAATTTGTTTGAAACAGACTTTCTGCCTGTTACATTTTTGCTTTTAACCAATTAAAGAAGCCAATGGCATTTTAGT TTTATATTGTGTTTTCCACTAGTATATCCCTGTTGATTTGTTTGTGCCTTTTATTAACTGCCATTTTCTAAAATTTTTTTCAATAAAAGG AAGGAAGATGTGAAAAAAATGGAGTCATAGTTTTGATGGAGAGAACAGAGAAACAAGTGTTAACATCTTTCTACTATAGGTTTTTTTCAT TTTTAGGCTATTTTACTTGTCAAAGGCCCCTGAGAACCTGTAGCTAAGGAACTCTTAGCTTTCCAGTGATAATAACAATAATAACAACAT TCTGTACTTACTTTGTGCCAGAAATGCTCCAAGTACTTTACATGTGTTAATAATGCTCACAGCAATCCTAAGAGGCAGGTGCTGTTATTA TCCCCATTTTACACATGAGGAAACTGAGATACAAAAGTTAAATAATTGTCACACAGCTAGTGATAGAACTGGGATTCAAACCTGGGGAGT CCGGCTTCAGAGTTTGTGGTCCTGCAGAGACAAAACAGCCGCTTTTCCAGTATTTTCCCAGTATGGTCAGAGAAGACCTGGGTGCTTGCC AAGATCCTTTGACCTTTAGGAATATTTCCCTACAGCCTTACAAAACATCAATTTTGGCTGAGCCTAGTACCCAACACTATATTCAGTTTG TAAGAAATTACCATTATCACATTTCCTGTTTGTCTTGGAGAGGTTGTCCTATCTCGCACCACATGGTAGGGAATTGTGAACAACACTGGA CAGAAAGTTAAAGCCTTGGATTCTGTACTCTTCATTCCTGTAAACCTTGGGTAAGTTTCGGAATTCTCTGTGAGCTTCTTAAAGTTTTTG AAAGCATGTAACCGGATAAGTGTATTTTTACAATGGAGGAGTTACAGTCATCTTGGTATTTGTGGGAGATTGGTTCCAGGATCCCCAAGC ATACCAAAATCCAAGGATGCTCAAGTCCCTTATATAAAATGGTATAGCATTTGCATATAACCTACACACATCCTCCCATATACTTTTAAT CACCTCTGGATTACCTATAATACCTAATATAATGTAAATGCTATGTAAATAGTTATACTGCATTGGTTTTTTAATTTATATTTTTTGTTA TTTTTTAAAATATATTTTTAATCCATGGTTGGTTAAATCTGTAGATATAGAGGGCCAACTGTACTGTTAGACACAAGGGTCTCGAGGCTT GCAGATAGAGACTGAATAACCCTCTCCATGATGATCCCTTAGAGTTCCCCCACTGTGCCTTTTTCTTTACATGTGCATGCAAACATGTGT CTCCACATACATTTTTTTTAACAAAAATTGAATTATGTTGATATATGTCCTGTAATTTGTGTTTTAAACTTAATATATCTTAGGCATTTT >In-frame_ENST00000539648_ENST00000263672_TCGA-44-7669-01A_APLP2_chr11_129997735_+_SPCS2_chr11_74676079_length(amino acids)=422AA_start in transcript=212_stop in transcript=1480 MLVPEKCQFFHKERMEVCENHQHWHTVVKEACLTQGMTLYSYGMLLPCGVDQFHGTEYVCCPQTKIIGSVSKEEEEEDEEEEEEEDEEED YDVYKSEFPTEADLEDFTEAAVDEDDEDEEEGEEVVEDRDYYYDTFKGDDYNEENPTEPGSDGTMSDKEITHDVKVPPTPLPTNDVDVYF ETSADDNEHARFQKAKEQLEIRHRNRMDRVKKEWEEAELQAKNLPKAERQTLIQWKIDDKPVKIDKWDGSAVKNSLDDSAKKVLLEKYKY VENFGLIDGRLTICTISCFFAIVALIWDYMHPFPESKPVLALCVISYFVMMGILTIYTSYKEKSIFLVAHRKDPTGMDPDDIWQLSSSLK -------------------------------------------------------------- >In-frame_ENST00000539648_ENST00000530257_TCGA-44-7669-01A_APLP2_chr11_129997735_+_SPCS2_chr11_74676079_length(transcript)=1387nt_BP=914nt AGATGCTTCTGGGTCGCGGTGTGCTAAGCGAGGAGTCCGAGTGTGTGAGCTTGAGAGCCGCGCGCTAGAGCGACCCGGCGAGGGATGGCG GCCACCGGGACCGCGGCCGCCGCAGCCACGGGCAGGCTCCTGCTTCTGCTGCTGGTGGGGCTCACGGCGCCTGCCTTGGCGCTGGCCGGC TACATCGAGTGGGTGAATTTGTAAGTGATGTCCTGCTAGTTCCAGAAAAGTGCCAGTTTTTCCACAAAGAGCGGATGGAGGTGTGTGAGA ATCACCAGCACTGGCACACGGTAGTCAAAGAGGCATGTCTGACTCAGGGAATGACCTTATATAGCTACGGCATGCTGCTCCCATGTGGGG TAGACCAGTTCCATGGCACTGAATATGTGTGCTGCCCTCAGACAAAGATTATTGGATCTGTGTCAAAAGAAGAGGAAGAGGAAGATGAAG AGGAAGAGGAAGAGGAAGATGAAGAGGAAGACTATGATGTTTATAAAAGTGAATTTCCTACTGAAGCAGATCTGGAAGACTTCACAGAAG CAGCTGTGGATGAGGATGATGAGGATGAGGAAGAAGGGGAGGAAGTGGTGGAGGACCGAGATTACTACTATGACACCTTCAAAGGAGATG ACTACAATGAGGAGAATCCTACTGAACCCGGCAGCGACGGCACCATGTCAGACAAGGAAATTACTCATGATGTCAAAGTTCCTCCAACTC CTCTGCCAACCAATGATGTTGATGTGTATTTCGAGACCTCTGCAGATGATAATGAGCATGCTCGCTTCCAGAAGGCTAAGGAGCAGCTGG AGATTCGGCACCGCAACCGAATGGACAGGGTAAAGAAGGAATGGGAAGAGGCAGAGCTTCAAGCTAAGAACCTCCCCAAAGCAGAGAGGC AGACTCTGATTCAGTGGAAGATAGATGATAAGCCTGTAAAAATTGACAAGTGGGATGGATCAGCTGTGAAAAACTCTTTGGATGATTCTG CCAAAAAGGAGAAGAGCATCTTTCTCGTGGCCCACAGGAAAGATCCTACAGGAATGGATCCTGATGATATTTGGCAGCTGTCCTCCAGTC TTAAAAGGTTTGATGACAAATACACCTTGAAGCTGACCTTCATCAGTGGGAGAACAAAGCAGCAGCGGGAAGCCGAGTTCACAAAGTCCA TTGCTAAGTTTTTTGACCACAGTGGGACACTGGTCATGGATGCATATGAGCCTGAAATATCCAGGCTCCATGACAGTCTTGCCATAGAAA GAAAAATAAAGTAGCCAATTCTAAAAGTAGCCCTCTTTCTCCTGGATCTTGCTGAATTAGTGGCTTGGGGGGTGGGGGAGATAAAAAGAA >In-frame_ENST00000539648_ENST00000530257_TCGA-44-7669-01A_APLP2_chr11_129997735_+_SPCS2_chr11_74676079_length(amino acids)=353AA_start in transcript=212_stop in transcript=1273 MLVPEKCQFFHKERMEVCENHQHWHTVVKEACLTQGMTLYSYGMLLPCGVDQFHGTEYVCCPQTKIIGSVSKEEEEEDEEEEEEEDEEED YDVYKSEFPTEADLEDFTEAAVDEDDEDEEEGEEVVEDRDYYYDTFKGDDYNEENPTEPGSDGTMSDKEITHDVKVPPTPLPTNDVDVYF ETSADDNEHARFQKAKEQLEIRHRNRMDRVKKEWEEAELQAKNLPKAERQTLIQWKIDDKPVKIDKWDGSAVKNSLDDSAKKEKSIFLVA -------------------------------------------------------------- >In-frame_ENST00000528499_ENST00000263672_TCGA-44-7669-01A_APLP2_chr11_129997735_+_SPCS2_chr11_74676079_length(transcript)=3767nt_BP=1212nt AGATGCTTCTGGGTCGCGGTGTGCTAAGCGAGGAGTCCGAGTGTGTGAGCTTGAGAGCCGCGCGCTAGAGCGACCCGGCGAGGGATGGCG GCCACCGGGACCGCGGCCGCCGCAGCCACGGGCAGGCTCCTGCTTCTGCTGCTGGTGGGGCTCACGGCGCCTGCCTTGGCGCTGGCCGGC TACATCGAGGCTCTTGCAGCCAATGCCGGAACAGGATTTGCTGTTGCTGAGCCTCAAATCGCAATGTTTTGTGGGAAGTTAAATATGCAT GTGAACATTCAGACTGGGAAATGGGAACCTGATCCAACAGGCACCAAGAGCTGCTTTGAAACAAAAGAAGAAGTTCTTCAGTACTGTCAG GAGATGTATCCAGAGCTACAGATCACAAATGTGATGGAGGCAAACCAGCGGGTTAGTATTGACAACTGGTGCCGGAGGGACAAAAAGCAA TGCAAGAGTCGCTTTGTTACACCTTTCAAGTGTCTCGTGGGTGAATTTGTAAGTGATGTCCTGCTAGTTCCAGAAAAGTGCCAGTTTTTC CACAAAGAGCGGATGGAGGTGTGTGAGAATCACCAGCACTGGCACACGGTAGTCAAAGAGGCATGTCTGACTCAGGGAATGACCTTATAT AGCTACGGCATGCTGCTCCCATGTGGGGTAGACCAGTTCCATGGCACTGAATATGTGTGCTGCCCTCAGACAAAGATTATTGGATCTGTG TCAAAAGAAGAGGAAGAGGAAGATGAAGAGGAAGAGGAAGAGGAAGATGAAGAGGAAGACTATGATGTTTATAAAAGTGAATTTCCTACT GAAGCAGATCTGGAAGACTTCACAGAAGCAGCTGTGGATGAGGATGATGAGGATGAGGAAGAAGGGGAGGAAGTGGTGGAGGACCGAGAT TACTACTATGACACCTTCAAAGGAGATGACTACAATGAGGAGAATCCTACTGAACCCGGCAGCGACGGCACCATGTCAGACAAGGAAATT ACTCATGATGTCAAAGTTCCTCCAACTCCTCTGCCAACCAATGATGTTGATGTGTATTTCGAGACCTCTGCAGATGATAATGAGCATGCT CGCTTCCAGAAGGCTAAGGAGCAGCTGGAGATTCGGCACCGCAACCGAATGGACAGGGTAAAGAAGGAATGGGAAGAGGCAGAGCTTCAA GCTAAGAACCTCCCCAAAGCAGAGAGGCAGACTCTGATTCAGTGGAAGATAGATGATAAGCCTGTAAAAATTGACAAGTGGGATGGATCA GCTGTGAAAAACTCTTTGGATGATTCTGCCAAAAAGGTACTTCTGGAAAAATACAAATATGTGGAGAATTTTGGTCTAATTGATGGTCGC CTCACCATCTGTACAATCTCCTGTTTCTTTGCCATAGTGGCTTTGATTTGGGATTATATGCACCCCTTTCCAGAGTCCAAACCCGTTTTG GCTTTGTGTGTCATATCCTATTTTGTGATGATGGGGATTCTGACCATTTATACCTCATATAAGGAGAAGAGCATCTTTCTCGTGGCCCAC AGGAAAGATCCTACAGGAATGGATCCTGATGATATTTGGCAGCTGTCCTCCAGTCTTAAAAGGTTTGATGACAAATACACCTTGAAGCTG ACCTTCATCAGTGGGAGAACAAAGCAGCAGCGGGAAGCCGAGTTCACAAAGTCCATTGCTAAGTTTTTTGACCACAGTGGGACACTGGTC ATGGATGCATATGAGCCTGAAATATCCAGGCTCCATGACAGTCTTGCCATAGAAAGAAAAATAAAGTAGCCAATTCTAAAAGTAGCCCTC TTTCTCCTGGATCTTGCTGAATTAGTGGCTTGGGGGGTGGGGGAGATAAAAAGAACTTAAAATGGGTAAAGTAAGAAATGTTAAAAAGTC CCTGTTTTGTCCTGAAATTTTAGTCTATTCTGGGTAAATAGGATTTTCTGACACAGATATGAGAAGTTGTAGCTCTGATGTCTAGCTGTA GTCTCCTTGATCTGCTGATTGCATTATTTTAATTTGCTTTTCTGGGAAAGCAGTTTTGCTAAAAGCTGTACAGACTTTTTCTTTTGTACC TAGCAGTACTTTATATAGTATAGCTTTGGGCCATGTAGCATTTTAAGACTCAATTTTAAAAAATTATTAATCTGTTGCTGACTCTTAATT CCTATTTCAATATGTGTTTCCTTGAAGAATTCAGGATACAACTTCTTGTGTATGACAGCTTTCCTTCACACACTATTTTTGTGGGTGTGT ATATATCTGATTTGGGAAGAATTTAAAAAACACATAGCTTTTTAATTTGTTTGAAACAGACTTTCTGCCTGTTACATTTTTGCTTTTAAC CAATTAAAGAAGCCAATGGCATTTTAGTTTTATATTGTGTTTTCCACTAGTATATCCCTGTTGATTTGTTTGTGCCTTTTATTAACTGCC ATTTTCTAAAATTTTTTTCAATAAAAGGAAGGAAGATGTGAAAAAAATGGAGTCATAGTTTTGATGGAGAGAACAGAGAAACAAGTGTTA ACATCTTTCTACTATAGGTTTTTTTCATTTTTAGGCTATTTTACTTGTCAAAGGCCCCTGAGAACCTGTAGCTAAGGAACTCTTAGCTTT CCAGTGATAATAACAATAATAACAACATTCTGTACTTACTTTGTGCCAGAAATGCTCCAAGTACTTTACATGTGTTAATAATGCTCACAG CAATCCTAAGAGGCAGGTGCTGTTATTATCCCCATTTTACACATGAGGAAACTGAGATACAAAAGTTAAATAATTGTCACACAGCTAGTG ATAGAACTGGGATTCAAACCTGGGGAGTCCGGCTTCAGAGTTTGTGGTCCTGCAGAGACAAAACAGCCGCTTTTCCAGTATTTTCCCAGT ATGGTCAGAGAAGACCTGGGTGCTTGCCAAGATCCTTTGACCTTTAGGAATATTTCCCTACAGCCTTACAAAACATCAATTTTGGCTGAG CCTAGTACCCAACACTATATTCAGTTTGTAAGAAATTACCATTATCACATTTCCTGTTTGTCTTGGAGAGGTTGTCCTATCTCGCACCAC ATGGTAGGGAATTGTGAACAACACTGGACAGAAAGTTAAAGCCTTGGATTCTGTACTCTTCATTCCTGTAAACCTTGGGTAAGTTTCGGA ATTCTCTGTGAGCTTCTTAAAGTTTTTGAAAGCATGTAACCGGATAAGTGTATTTTTACAATGGAGGAGTTACAGTCATCTTGGTATTTG TGGGAGATTGGTTCCAGGATCCCCAAGCATACCAAAATCCAAGGATGCTCAAGTCCCTTATATAAAATGGTATAGCATTTGCATATAACC TACACACATCCTCCCATATACTTTTAATCACCTCTGGATTACCTATAATACCTAATATAATGTAAATGCTATGTAAATAGTTATACTGCA TTGGTTTTTTAATTTATATTTTTTGTTATTTTTTAAAATATATTTTTAATCCATGGTTGGTTAAATCTGTAGATATAGAGGGCCAACTGT ACTGTTAGACACAAGGGTCTCGAGGCTTGCAGATAGAGACTGAATAACCCTCTCCATGATGATCCCTTAGAGTTCCCCCACTGTGCCTTT TTCTTTACATGTGCATGCAAACATGTGTCTCCACATACATTTTTTTTAACAAAAATTGAATTATGTTGATATATGTCCTGTAATTTGTGT >In-frame_ENST00000528499_ENST00000263672_TCGA-44-7669-01A_APLP2_chr11_129997735_+_SPCS2_chr11_74676079_length(amino acids)=564AA_start in transcript=84_stop in transcript=1778 MAATGTAAAAATGRLLLLLLVGLTAPALALAGYIEALAANAGTGFAVAEPQIAMFCGKLNMHVNIQTGKWEPDPTGTKSCFETKEEVLQY CQEMYPELQITNVMEANQRVSIDNWCRRDKKQCKSRFVTPFKCLVGEFVSDVLLVPEKCQFFHKERMEVCENHQHWHTVVKEACLTQGMT LYSYGMLLPCGVDQFHGTEYVCCPQTKIIGSVSKEEEEEDEEEEEEEDEEEDYDVYKSEFPTEADLEDFTEAAVDEDDEDEEEGEEVVED RDYYYDTFKGDDYNEENPTEPGSDGTMSDKEITHDVKVPPTPLPTNDVDVYFETSADDNEHARFQKAKEQLEIRHRNRMDRVKKEWEEAE LQAKNLPKAERQTLIQWKIDDKPVKIDKWDGSAVKNSLDDSAKKVLLEKYKYVENFGLIDGRLTICTISCFFAIVALIWDYMHPFPESKP VLALCVISYFVMMGILTIYTSYKEKSIFLVAHRKDPTGMDPDDIWQLSSSLKRFDDKYTLKLTFISGRTKQQREAEFTKSIAKFFDHSGT -------------------------------------------------------------- >In-frame_ENST00000528499_ENST00000530257_TCGA-44-7669-01A_APLP2_chr11_129997735_+_SPCS2_chr11_74676079_length(transcript)=1685nt_BP=1212nt AGATGCTTCTGGGTCGCGGTGTGCTAAGCGAGGAGTCCGAGTGTGTGAGCTTGAGAGCCGCGCGCTAGAGCGACCCGGCGAGGGATGGCG GCCACCGGGACCGCGGCCGCCGCAGCCACGGGCAGGCTCCTGCTTCTGCTGCTGGTGGGGCTCACGGCGCCTGCCTTGGCGCTGGCCGGC TACATCGAGGCTCTTGCAGCCAATGCCGGAACAGGATTTGCTGTTGCTGAGCCTCAAATCGCAATGTTTTGTGGGAAGTTAAATATGCAT GTGAACATTCAGACTGGGAAATGGGAACCTGATCCAACAGGCACCAAGAGCTGCTTTGAAACAAAAGAAGAAGTTCTTCAGTACTGTCAG GAGATGTATCCAGAGCTACAGATCACAAATGTGATGGAGGCAAACCAGCGGGTTAGTATTGACAACTGGTGCCGGAGGGACAAAAAGCAA TGCAAGAGTCGCTTTGTTACACCTTTCAAGTGTCTCGTGGGTGAATTTGTAAGTGATGTCCTGCTAGTTCCAGAAAAGTGCCAGTTTTTC CACAAAGAGCGGATGGAGGTGTGTGAGAATCACCAGCACTGGCACACGGTAGTCAAAGAGGCATGTCTGACTCAGGGAATGACCTTATAT AGCTACGGCATGCTGCTCCCATGTGGGGTAGACCAGTTCCATGGCACTGAATATGTGTGCTGCCCTCAGACAAAGATTATTGGATCTGTG TCAAAAGAAGAGGAAGAGGAAGATGAAGAGGAAGAGGAAGAGGAAGATGAAGAGGAAGACTATGATGTTTATAAAAGTGAATTTCCTACT GAAGCAGATCTGGAAGACTTCACAGAAGCAGCTGTGGATGAGGATGATGAGGATGAGGAAGAAGGGGAGGAAGTGGTGGAGGACCGAGAT TACTACTATGACACCTTCAAAGGAGATGACTACAATGAGGAGAATCCTACTGAACCCGGCAGCGACGGCACCATGTCAGACAAGGAAATT ACTCATGATGTCAAAGTTCCTCCAACTCCTCTGCCAACCAATGATGTTGATGTGTATTTCGAGACCTCTGCAGATGATAATGAGCATGCT CGCTTCCAGAAGGCTAAGGAGCAGCTGGAGATTCGGCACCGCAACCGAATGGACAGGGTAAAGAAGGAATGGGAAGAGGCAGAGCTTCAA GCTAAGAACCTCCCCAAAGCAGAGAGGCAGACTCTGATTCAGTGGAAGATAGATGATAAGCCTGTAAAAATTGACAAGTGGGATGGATCA GCTGTGAAAAACTCTTTGGATGATTCTGCCAAAAAGGAGAAGAGCATCTTTCTCGTGGCCCACAGGAAAGATCCTACAGGAATGGATCCT GATGATATTTGGCAGCTGTCCTCCAGTCTTAAAAGGTTTGATGACAAATACACCTTGAAGCTGACCTTCATCAGTGGGAGAACAAAGCAG CAGCGGGAAGCCGAGTTCACAAAGTCCATTGCTAAGTTTTTTGACCACAGTGGGACACTGGTCATGGATGCATATGAGCCTGAAATATCC AGGCTCCATGACAGTCTTGCCATAGAAAGAAAAATAAAGTAGCCAATTCTAAAAGTAGCCCTCTTTCTCCTGGATCTTGCTGAATTAGTG >In-frame_ENST00000528499_ENST00000530257_TCGA-44-7669-01A_APLP2_chr11_129997735_+_SPCS2_chr11_74676079_length(amino acids)=495AA_start in transcript=84_stop in transcript=1571 MAATGTAAAAATGRLLLLLLVGLTAPALALAGYIEALAANAGTGFAVAEPQIAMFCGKLNMHVNIQTGKWEPDPTGTKSCFETKEEVLQY CQEMYPELQITNVMEANQRVSIDNWCRRDKKQCKSRFVTPFKCLVGEFVSDVLLVPEKCQFFHKERMEVCENHQHWHTVVKEACLTQGMT LYSYGMLLPCGVDQFHGTEYVCCPQTKIIGSVSKEEEEEDEEEEEEEDEEEDYDVYKSEFPTEADLEDFTEAAVDEDDEDEEEGEEVVED RDYYYDTFKGDDYNEENPTEPGSDGTMSDKEITHDVKVPPTPLPTNDVDVYFETSADDNEHARFQKAKEQLEIRHRNRMDRVKKEWEEAE LQAKNLPKAERQTLIQWKIDDKPVKIDKWDGSAVKNSLDDSAKKEKSIFLVAHRKDPTGMDPDDIWQLSSSLKRFDDKYTLKLTFISGRT -------------------------------------------------------------- >In-frame_ENST00000263574_ENST00000263672_TCGA-44-7669-01A_APLP2_chr11_129997735_+_SPCS2_chr11_74676079_length(transcript)=3923nt_BP=1368nt GTCGCGGTGTGCTAAGCGAGGAGTCCGAGTGTGTGAGCTTGAGAGCCGCGCGCTAGAGCGACCCGGCGAGGGATGGCGGCCACCGGGACC GCGGCCGCCGCAGCCACGGGCAGGCTCCTGCTTCTGCTGCTGGTGGGGCTCACGGCGCCTGCCTTGGCGCTGGCCGGCTACATCGAGGCT CTTGCAGCCAATGCCGGAACAGGATTTGCTGTTGCTGAGCCTCAAATCGCAATGTTTTGTGGGAAGTTAAATATGCATGTGAACATTCAG ACTGGGAAATGGGAACCTGATCCAACAGGCACCAAGAGCTGCTTTGAAACAAAAGAAGAAGTTCTTCAGTACTGTCAGGAGATGTATCCA GAGCTACAGATCACAAATGTGATGGAGGCAAACCAGCGGGTTAGTATTGACAACTGGTGCCGGAGGGACAAAAAGCAATGCAAGAGTCGC TTTGTTACACCTTTCAAGTGTCTCGTGGGTGAATTTGTAAGTGATGTCCTGCTAGTTCCAGAAAAGTGCCAGTTTTTCCACAAAGAGCGG ATGGAGGTGTGTGAGAATCACCAGCACTGGCACACGGTAGTCAAAGAGGCATGTCTGACTCAGGGAATGACCTTATATAGCTACGGCATG CTGCTCCCATGTGGGGTAGACCAGTTCCATGGCACTGAATATGTGTGCTGCCCTCAGACAAAGATTATTGGATCTGTGTCAAAAGAAGAG GAAGAGGAAGATGAAGAGGAAGAGGAAGAGGAAGATGAAGAGGAAGACTATGATGTTTATAAAAGTGAATTTCCTACTGAAGCAGATCTG GAAGACTTCACAGAAGCAGCTGTGGATGAGGATGATGAGGATGAGGAAGAAGGGGAGGAAGTGGTGGAGGACCGAGATTACTACTATGAC ACCTTCAAAGGAGATGACTACAATGAGGAGAATCCTACTGAACCCGGCAGCGACGGCACCATGTCAGACAAGGAAATTACTCATGATGTC AAAGCTGTCTGCTCCCAGGAGGCGATGACGGGGCCCTGCCGGGCCGTGATGCCTCGTTGGTACTTCGACCTCTCCAAGGGAAAGTGCGTG CGCTTTATATATGGTGGCTGCGGCGGCAACAGGAACAATTTTGAGTCTGAGGATTATTGTATGGCTGTGTGTAAAGCGATGATTCCTCCA ACTCCTCTGCCAACCAATGATGTTGATGTGTATTTCGAGACCTCTGCAGATGATAATGAGCATGCTCGCTTCCAGAAGGCTAAGGAGCAG CTGGAGATTCGGCACCGCAACCGAATGGACAGGGTAAAGAAGGAATGGGAAGAGGCAGAGCTTCAAGCTAAGAACCTCCCCAAAGCAGAG AGGCAGACTCTGATTCAGTGGAAGATAGATGATAAGCCTGTAAAAATTGACAAGTGGGATGGATCAGCTGTGAAAAACTCTTTGGATGAT TCTGCCAAAAAGGTACTTCTGGAAAAATACAAATATGTGGAGAATTTTGGTCTAATTGATGGTCGCCTCACCATCTGTACAATCTCCTGT TTCTTTGCCATAGTGGCTTTGATTTGGGATTATATGCACCCCTTTCCAGAGTCCAAACCCGTTTTGGCTTTGTGTGTCATATCCTATTTT GTGATGATGGGGATTCTGACCATTTATACCTCATATAAGGAGAAGAGCATCTTTCTCGTGGCCCACAGGAAAGATCCTACAGGAATGGAT CCTGATGATATTTGGCAGCTGTCCTCCAGTCTTAAAAGGTTTGATGACAAATACACCTTGAAGCTGACCTTCATCAGTGGGAGAACAAAG CAGCAGCGGGAAGCCGAGTTCACAAAGTCCATTGCTAAGTTTTTTGACCACAGTGGGACACTGGTCATGGATGCATATGAGCCTGAAATA TCCAGGCTCCATGACAGTCTTGCCATAGAAAGAAAAATAAAGTAGCCAATTCTAAAAGTAGCCCTCTTTCTCCTGGATCTTGCTGAATTA GTGGCTTGGGGGGTGGGGGAGATAAAAAGAACTTAAAATGGGTAAAGTAAGAAATGTTAAAAAGTCCCTGTTTTGTCCTGAAATTTTAGT CTATTCTGGGTAAATAGGATTTTCTGACACAGATATGAGAAGTTGTAGCTCTGATGTCTAGCTGTAGTCTCCTTGATCTGCTGATTGCAT TATTTTAATTTGCTTTTCTGGGAAAGCAGTTTTGCTAAAAGCTGTACAGACTTTTTCTTTTGTACCTAGCAGTACTTTATATAGTATAGC TTTGGGCCATGTAGCATTTTAAGACTCAATTTTAAAAAATTATTAATCTGTTGCTGACTCTTAATTCCTATTTCAATATGTGTTTCCTTG AAGAATTCAGGATACAACTTCTTGTGTATGACAGCTTTCCTTCACACACTATTTTTGTGGGTGTGTATATATCTGATTTGGGAAGAATTT AAAAAACACATAGCTTTTTAATTTGTTTGAAACAGACTTTCTGCCTGTTACATTTTTGCTTTTAACCAATTAAAGAAGCCAATGGCATTT TAGTTTTATATTGTGTTTTCCACTAGTATATCCCTGTTGATTTGTTTGTGCCTTTTATTAACTGCCATTTTCTAAAATTTTTTTCAATAA AAGGAAGGAAGATGTGAAAAAAATGGAGTCATAGTTTTGATGGAGAGAACAGAGAAACAAGTGTTAACATCTTTCTACTATAGGTTTTTT TCATTTTTAGGCTATTTTACTTGTCAAAGGCCCCTGAGAACCTGTAGCTAAGGAACTCTTAGCTTTCCAGTGATAATAACAATAATAACA ACATTCTGTACTTACTTTGTGCCAGAAATGCTCCAAGTACTTTACATGTGTTAATAATGCTCACAGCAATCCTAAGAGGCAGGTGCTGTT ATTATCCCCATTTTACACATGAGGAAACTGAGATACAAAAGTTAAATAATTGTCACACAGCTAGTGATAGAACTGGGATTCAAACCTGGG GAGTCCGGCTTCAGAGTTTGTGGTCCTGCAGAGACAAAACAGCCGCTTTTCCAGTATTTTCCCAGTATGGTCAGAGAAGACCTGGGTGCT TGCCAAGATCCTTTGACCTTTAGGAATATTTCCCTACAGCCTTACAAAACATCAATTTTGGCTGAGCCTAGTACCCAACACTATATTCAG TTTGTAAGAAATTACCATTATCACATTTCCTGTTTGTCTTGGAGAGGTTGTCCTATCTCGCACCACATGGTAGGGAATTGTGAACAACAC TGGACAGAAAGTTAAAGCCTTGGATTCTGTACTCTTCATTCCTGTAAACCTTGGGTAAGTTTCGGAATTCTCTGTGAGCTTCTTAAAGTT TTTGAAAGCATGTAACCGGATAAGTGTATTTTTACAATGGAGGAGTTACAGTCATCTTGGTATTTGTGGGAGATTGGTTCCAGGATCCCC AAGCATACCAAAATCCAAGGATGCTCAAGTCCCTTATATAAAATGGTATAGCATTTGCATATAACCTACACACATCCTCCCATATACTTT TAATCACCTCTGGATTACCTATAATACCTAATATAATGTAAATGCTATGTAAATAGTTATACTGCATTGGTTTTTTAATTTATATTTTTT GTTATTTTTTAAAATATATTTTTAATCCATGGTTGGTTAAATCTGTAGATATAGAGGGCCAACTGTACTGTTAGACACAAGGGTCTCGAG GCTTGCAGATAGAGACTGAATAACCCTCTCCATGATGATCCCTTAGAGTTCCCCCACTGTGCCTTTTTCTTTACATGTGCATGCAAACAT GTGTCTCCACATACATTTTTTTTAACAAAAATTGAATTATGTTGATATATGTCCTGTAATTTGTGTTTTAAACTTAATATATCTTAGGCA >In-frame_ENST00000263574_ENST00000263672_TCGA-44-7669-01A_APLP2_chr11_129997735_+_SPCS2_chr11_74676079_length(amino acids)=620AA_start in transcript=72_stop in transcript=1934 MAATGTAAAAATGRLLLLLLVGLTAPALALAGYIEALAANAGTGFAVAEPQIAMFCGKLNMHVNIQTGKWEPDPTGTKSCFETKEEVLQY CQEMYPELQITNVMEANQRVSIDNWCRRDKKQCKSRFVTPFKCLVGEFVSDVLLVPEKCQFFHKERMEVCENHQHWHTVVKEACLTQGMT LYSYGMLLPCGVDQFHGTEYVCCPQTKIIGSVSKEEEEEDEEEEEEEDEEEDYDVYKSEFPTEADLEDFTEAAVDEDDEDEEEGEEVVED RDYYYDTFKGDDYNEENPTEPGSDGTMSDKEITHDVKAVCSQEAMTGPCRAVMPRWYFDLSKGKCVRFIYGGCGGNRNNFESEDYCMAVC KAMIPPTPLPTNDVDVYFETSADDNEHARFQKAKEQLEIRHRNRMDRVKKEWEEAELQAKNLPKAERQTLIQWKIDDKPVKIDKWDGSAV KNSLDDSAKKVLLEKYKYVENFGLIDGRLTICTISCFFAIVALIWDYMHPFPESKPVLALCVISYFVMMGILTIYTSYKEKSIFLVAHRK -------------------------------------------------------------- >In-frame_ENST00000263574_ENST00000530257_TCGA-44-7669-01A_APLP2_chr11_129997735_+_SPCS2_chr11_74676079_length(transcript)=1841nt_BP=1368nt GTCGCGGTGTGCTAAGCGAGGAGTCCGAGTGTGTGAGCTTGAGAGCCGCGCGCTAGAGCGACCCGGCGAGGGATGGCGGCCACCGGGACC GCGGCCGCCGCAGCCACGGGCAGGCTCCTGCTTCTGCTGCTGGTGGGGCTCACGGCGCCTGCCTTGGCGCTGGCCGGCTACATCGAGGCT CTTGCAGCCAATGCCGGAACAGGATTTGCTGTTGCTGAGCCTCAAATCGCAATGTTTTGTGGGAAGTTAAATATGCATGTGAACATTCAG ACTGGGAAATGGGAACCTGATCCAACAGGCACCAAGAGCTGCTTTGAAACAAAAGAAGAAGTTCTTCAGTACTGTCAGGAGATGTATCCA GAGCTACAGATCACAAATGTGATGGAGGCAAACCAGCGGGTTAGTATTGACAACTGGTGCCGGAGGGACAAAAAGCAATGCAAGAGTCGC TTTGTTACACCTTTCAAGTGTCTCGTGGGTGAATTTGTAAGTGATGTCCTGCTAGTTCCAGAAAAGTGCCAGTTTTTCCACAAAGAGCGG ATGGAGGTGTGTGAGAATCACCAGCACTGGCACACGGTAGTCAAAGAGGCATGTCTGACTCAGGGAATGACCTTATATAGCTACGGCATG CTGCTCCCATGTGGGGTAGACCAGTTCCATGGCACTGAATATGTGTGCTGCCCTCAGACAAAGATTATTGGATCTGTGTCAAAAGAAGAG GAAGAGGAAGATGAAGAGGAAGAGGAAGAGGAAGATGAAGAGGAAGACTATGATGTTTATAAAAGTGAATTTCCTACTGAAGCAGATCTG GAAGACTTCACAGAAGCAGCTGTGGATGAGGATGATGAGGATGAGGAAGAAGGGGAGGAAGTGGTGGAGGACCGAGATTACTACTATGAC ACCTTCAAAGGAGATGACTACAATGAGGAGAATCCTACTGAACCCGGCAGCGACGGCACCATGTCAGACAAGGAAATTACTCATGATGTC AAAGCTGTCTGCTCCCAGGAGGCGATGACGGGGCCCTGCCGGGCCGTGATGCCTCGTTGGTACTTCGACCTCTCCAAGGGAAAGTGCGTG CGCTTTATATATGGTGGCTGCGGCGGCAACAGGAACAATTTTGAGTCTGAGGATTATTGTATGGCTGTGTGTAAAGCGATGATTCCTCCA ACTCCTCTGCCAACCAATGATGTTGATGTGTATTTCGAGACCTCTGCAGATGATAATGAGCATGCTCGCTTCCAGAAGGCTAAGGAGCAG CTGGAGATTCGGCACCGCAACCGAATGGACAGGGTAAAGAAGGAATGGGAAGAGGCAGAGCTTCAAGCTAAGAACCTCCCCAAAGCAGAG AGGCAGACTCTGATTCAGTGGAAGATAGATGATAAGCCTGTAAAAATTGACAAGTGGGATGGATCAGCTGTGAAAAACTCTTTGGATGAT TCTGCCAAAAAGGAGAAGAGCATCTTTCTCGTGGCCCACAGGAAAGATCCTACAGGAATGGATCCTGATGATATTTGGCAGCTGTCCTCC AGTCTTAAAAGGTTTGATGACAAATACACCTTGAAGCTGACCTTCATCAGTGGGAGAACAAAGCAGCAGCGGGAAGCCGAGTTCACAAAG TCCATTGCTAAGTTTTTTGACCACAGTGGGACACTGGTCATGGATGCATATGAGCCTGAAATATCCAGGCTCCATGACAGTCTTGCCATA GAAAGAAAAATAAAGTAGCCAATTCTAAAAGTAGCCCTCTTTCTCCTGGATCTTGCTGAATTAGTGGCTTGGGGGGTGGGGGAGATAAAA >In-frame_ENST00000263574_ENST00000530257_TCGA-44-7669-01A_APLP2_chr11_129997735_+_SPCS2_chr11_74676079_length(amino acids)=551AA_start in transcript=72_stop in transcript=1727 MAATGTAAAAATGRLLLLLLVGLTAPALALAGYIEALAANAGTGFAVAEPQIAMFCGKLNMHVNIQTGKWEPDPTGTKSCFETKEEVLQY CQEMYPELQITNVMEANQRVSIDNWCRRDKKQCKSRFVTPFKCLVGEFVSDVLLVPEKCQFFHKERMEVCENHQHWHTVVKEACLTQGMT LYSYGMLLPCGVDQFHGTEYVCCPQTKIIGSVSKEEEEEDEEEEEEEDEEEDYDVYKSEFPTEADLEDFTEAAVDEDDEDEEEGEEVVED RDYYYDTFKGDDYNEENPTEPGSDGTMSDKEITHDVKAVCSQEAMTGPCRAVMPRWYFDLSKGKCVRFIYGGCGGNRNNFESEDYCMAVC KAMIPPTPLPTNDVDVYFETSADDNEHARFQKAKEQLEIRHRNRMDRVKKEWEEAELQAKNLPKAERQTLIQWKIDDKPVKIDKWDGSAV KNSLDDSAKKEKSIFLVAHRKDPTGMDPDDIWQLSSSLKRFDDKYTLKLTFISGRTKQQREAEFTKSIAKFFDHSGTLVMDAYEPEISRL -------------------------------------------------------------- >In-frame_ENST00000345598_ENST00000263672_TCGA-44-7669-01A_APLP2_chr11_129997735_+_SPCS2_chr11_74676079_length(transcript)=3226nt_BP=671nt GCTAAGCGAGGAGTCCGAGTGTGTGAGCTTGAGAGCCGCGCGCTAGAGCGACCCGGCGAGGGATGGCGGCCACCGGGACCGCGGCCGCCG CAGCCACGGGCAGGCTCCTGCTTCTGCTGCTGGTGGGGCTCACGGCGCCTGCCTTGGCGCTGGCCGGCTACATCGAGGCTCTTGCAGCCA ATGCCGGAACAGGATTTGCTGTTGCTGAGCCTCAAATCGCAATGTTTTGTGGGAAGTTAAATATGCATGTGAACATTCAGACTGGGAAAT GGGAACCTGATCCAACAGGCACCAAGAGCTGCTTTGAAACAAAAGAAGAAGTTCTTCAGTACTGTCAGGAGATGTATCCAGAGCTACAGA TCACAAATGTGATGGAGGCAAACCAGCGGGTTAGTATTGACAACTGGTGCCGGAGGGACAAAAAGCAATGCAAGAGTCGCTTTGTTACAC CTTTCAAGTGTCTCGTTCCTCCAACTCCTCTGCCAACCAATGATGTTGATGTGTATTTCGAGACCTCTGCAGATGATAATGAGCATGCTC GCTTCCAGAAGGCTAAGGAGCAGCTGGAGATTCGGCACCGCAACCGAATGGACAGGGTAAAGAAGGAATGGGAAGAGGCAGAGCTTCAAG CTAAGAACCTCCCCAAAGCAGAGAGGCAGACTCTGATTCAGTGGAAGATAGATGATAAGCCTGTAAAAATTGACAAGTGGGATGGATCAG CTGTGAAAAACTCTTTGGATGATTCTGCCAAAAAGGTACTTCTGGAAAAATACAAATATGTGGAGAATTTTGGTCTAATTGATGGTCGCC TCACCATCTGTACAATCTCCTGTTTCTTTGCCATAGTGGCTTTGATTTGGGATTATATGCACCCCTTTCCAGAGTCCAAACCCGTTTTGG CTTTGTGTGTCATATCCTATTTTGTGATGATGGGGATTCTGACCATTTATACCTCATATAAGGAGAAGAGCATCTTTCTCGTGGCCCACA GGAAAGATCCTACAGGAATGGATCCTGATGATATTTGGCAGCTGTCCTCCAGTCTTAAAAGGTTTGATGACAAATACACCTTGAAGCTGA CCTTCATCAGTGGGAGAACAAAGCAGCAGCGGGAAGCCGAGTTCACAAAGTCCATTGCTAAGTTTTTTGACCACAGTGGGACACTGGTCA TGGATGCATATGAGCCTGAAATATCCAGGCTCCATGACAGTCTTGCCATAGAAAGAAAAATAAAGTAGCCAATTCTAAAAGTAGCCCTCT TTCTCCTGGATCTTGCTGAATTAGTGGCTTGGGGGGTGGGGGAGATAAAAAGAACTTAAAATGGGTAAAGTAAGAAATGTTAAAAAGTCC CTGTTTTGTCCTGAAATTTTAGTCTATTCTGGGTAAATAGGATTTTCTGACACAGATATGAGAAGTTGTAGCTCTGATGTCTAGCTGTAG TCTCCTTGATCTGCTGATTGCATTATTTTAATTTGCTTTTCTGGGAAAGCAGTTTTGCTAAAAGCTGTACAGACTTTTTCTTTTGTACCT AGCAGTACTTTATATAGTATAGCTTTGGGCCATGTAGCATTTTAAGACTCAATTTTAAAAAATTATTAATCTGTTGCTGACTCTTAATTC CTATTTCAATATGTGTTTCCTTGAAGAATTCAGGATACAACTTCTTGTGTATGACAGCTTTCCTTCACACACTATTTTTGTGGGTGTGTA TATATCTGATTTGGGAAGAATTTAAAAAACACATAGCTTTTTAATTTGTTTGAAACAGACTTTCTGCCTGTTACATTTTTGCTTTTAACC AATTAAAGAAGCCAATGGCATTTTAGTTTTATATTGTGTTTTCCACTAGTATATCCCTGTTGATTTGTTTGTGCCTTTTATTAACTGCCA TTTTCTAAAATTTTTTTCAATAAAAGGAAGGAAGATGTGAAAAAAATGGAGTCATAGTTTTGATGGAGAGAACAGAGAAACAAGTGTTAA CATCTTTCTACTATAGGTTTTTTTCATTTTTAGGCTATTTTACTTGTCAAAGGCCCCTGAGAACCTGTAGCTAAGGAACTCTTAGCTTTC CAGTGATAATAACAATAATAACAACATTCTGTACTTACTTTGTGCCAGAAATGCTCCAAGTACTTTACATGTGTTAATAATGCTCACAGC AATCCTAAGAGGCAGGTGCTGTTATTATCCCCATTTTACACATGAGGAAACTGAGATACAAAAGTTAAATAATTGTCACACAGCTAGTGA TAGAACTGGGATTCAAACCTGGGGAGTCCGGCTTCAGAGTTTGTGGTCCTGCAGAGACAAAACAGCCGCTTTTCCAGTATTTTCCCAGTA TGGTCAGAGAAGACCTGGGTGCTTGCCAAGATCCTTTGACCTTTAGGAATATTTCCCTACAGCCTTACAAAACATCAATTTTGGCTGAGC CTAGTACCCAACACTATATTCAGTTTGTAAGAAATTACCATTATCACATTTCCTGTTTGTCTTGGAGAGGTTGTCCTATCTCGCACCACA TGGTAGGGAATTGTGAACAACACTGGACAGAAAGTTAAAGCCTTGGATTCTGTACTCTTCATTCCTGTAAACCTTGGGTAAGTTTCGGAA TTCTCTGTGAGCTTCTTAAAGTTTTTGAAAGCATGTAACCGGATAAGTGTATTTTTACAATGGAGGAGTTACAGTCATCTTGGTATTTGT GGGAGATTGGTTCCAGGATCCCCAAGCATACCAAAATCCAAGGATGCTCAAGTCCCTTATATAAAATGGTATAGCATTTGCATATAACCT ACACACATCCTCCCATATACTTTTAATCACCTCTGGATTACCTATAATACCTAATATAATGTAAATGCTATGTAAATAGTTATACTGCAT TGGTTTTTTAATTTATATTTTTTGTTATTTTTTAAAATATATTTTTAATCCATGGTTGGTTAAATCTGTAGATATAGAGGGCCAACTGTA CTGTTAGACACAAGGGTCTCGAGGCTTGCAGATAGAGACTGAATAACCCTCTCCATGATGATCCCTTAGAGTTCCCCCACTGTGCCTTTT TCTTTACATGTGCATGCAAACATGTGTCTCCACATACATTTTTTTTAACAAAAATTGAATTATGTTGATATATGTCCTGTAATTTGTGTT >In-frame_ENST00000345598_ENST00000263672_TCGA-44-7669-01A_APLP2_chr11_129997735_+_SPCS2_chr11_74676079_length(amino acids)=391AA_start in transcript=62_stop in transcript=1237 MAATGTAAAAATGRLLLLLLVGLTAPALALAGYIEALAANAGTGFAVAEPQIAMFCGKLNMHVNIQTGKWEPDPTGTKSCFETKEEVLQY CQEMYPELQITNVMEANQRVSIDNWCRRDKKQCKSRFVTPFKCLVPPTPLPTNDVDVYFETSADDNEHARFQKAKEQLEIRHRNRMDRVK KEWEEAELQAKNLPKAERQTLIQWKIDDKPVKIDKWDGSAVKNSLDDSAKKVLLEKYKYVENFGLIDGRLTICTISCFFAIVALIWDYMH PFPESKPVLALCVISYFVMMGILTIYTSYKEKSIFLVAHRKDPTGMDPDDIWQLSSSLKRFDDKYTLKLTFISGRTKQQREAEFTKSIAK -------------------------------------------------------------- >In-frame_ENST00000345598_ENST00000530257_TCGA-44-7669-01A_APLP2_chr11_129997735_+_SPCS2_chr11_74676079_length(transcript)=1144nt_BP=671nt GCTAAGCGAGGAGTCCGAGTGTGTGAGCTTGAGAGCCGCGCGCTAGAGCGACCCGGCGAGGGATGGCGGCCACCGGGACCGCGGCCGCCG CAGCCACGGGCAGGCTCCTGCTTCTGCTGCTGGTGGGGCTCACGGCGCCTGCCTTGGCGCTGGCCGGCTACATCGAGGCTCTTGCAGCCA ATGCCGGAACAGGATTTGCTGTTGCTGAGCCTCAAATCGCAATGTTTTGTGGGAAGTTAAATATGCATGTGAACATTCAGACTGGGAAAT GGGAACCTGATCCAACAGGCACCAAGAGCTGCTTTGAAACAAAAGAAGAAGTTCTTCAGTACTGTCAGGAGATGTATCCAGAGCTACAGA TCACAAATGTGATGGAGGCAAACCAGCGGGTTAGTATTGACAACTGGTGCCGGAGGGACAAAAAGCAATGCAAGAGTCGCTTTGTTACAC CTTTCAAGTGTCTCGTTCCTCCAACTCCTCTGCCAACCAATGATGTTGATGTGTATTTCGAGACCTCTGCAGATGATAATGAGCATGCTC GCTTCCAGAAGGCTAAGGAGCAGCTGGAGATTCGGCACCGCAACCGAATGGACAGGGTAAAGAAGGAATGGGAAGAGGCAGAGCTTCAAG CTAAGAACCTCCCCAAAGCAGAGAGGCAGACTCTGATTCAGTGGAAGATAGATGATAAGCCTGTAAAAATTGACAAGTGGGATGGATCAG CTGTGAAAAACTCTTTGGATGATTCTGCCAAAAAGGAGAAGAGCATCTTTCTCGTGGCCCACAGGAAAGATCCTACAGGAATGGATCCTG ATGATATTTGGCAGCTGTCCTCCAGTCTTAAAAGGTTTGATGACAAATACACCTTGAAGCTGACCTTCATCAGTGGGAGAACAAAGCAGC AGCGGGAAGCCGAGTTCACAAAGTCCATTGCTAAGTTTTTTGACCACAGTGGGACACTGGTCATGGATGCATATGAGCCTGAAATATCCA GGCTCCATGACAGTCTTGCCATAGAAAGAAAAATAAAGTAGCCAATTCTAAAAGTAGCCCTCTTTCTCCTGGATCTTGCTGAATTAGTGG >In-frame_ENST00000345598_ENST00000530257_TCGA-44-7669-01A_APLP2_chr11_129997735_+_SPCS2_chr11_74676079_length(amino acids)=322AA_start in transcript=62_stop in transcript=1030 MAATGTAAAAATGRLLLLLLVGLTAPALALAGYIEALAANAGTGFAVAEPQIAMFCGKLNMHVNIQTGKWEPDPTGTKSCFETKEEVLQY CQEMYPELQITNVMEANQRVSIDNWCRRDKKQCKSRFVTPFKCLVPPTPLPTNDVDVYFETSADDNEHARFQKAKEQLEIRHRNRMDRVK KEWEEAELQAKNLPKAERQTLIQWKIDDKPVKIDKWDGSAVKNSLDDSAKKEKSIFLVAHRKDPTGMDPDDIWQLSSSLKRFDDKYTLKL -------------------------------------------------------------- >In-frame_ENST00000338167_ENST00000263672_TCGA-44-7669-01A_APLP2_chr11_129997735_+_SPCS2_chr11_74676079_length(transcript)=3908nt_BP=1353nt GCGAGGAGTCCGAGTGTGTGAGCTTGAGAGCCGCGCGCTAGAGCGACCCGGCGAGGGATGGCGGCCACCGGGACCGCGGCCGCCGCAGCC ACGGGCAGGCTCCTGCTTCTGCTGCTGGTGGGGCTCACGGCGCCTGCCTTGGCGCTGGCCGGCTACATCGAGGCTCTTGCAGCCAATGCC GGAACAGGATTTGCTGTTGCTGAGCCTCAAATCGCAATGTTTTGTGGGAAGTTAAATATGCATGTGAACATTCAGACTGGGAAATGGGAA CCTGATCCAACAGGCACCAAGAGCTGCTTTGAAACAAAAGAAGAAGTTCTTCAGTACTGTCAGGAGATGTATCCAGAGCTACAGATCACA AATGTGATGGAGGCAAACCAGCGGGTTAGTATTGACAACTGGTGCCGGAGGGACAAAAAGCAATGCAAGAGTCGCTTTGTTACACCTTTC AAGTGTCTCGTGGGTGAATTTGTAAGTGATGTCCTGCTAGTTCCAGAAAAGTGCCAGTTTTTCCACAAAGAGCGGATGGAGGTGTGTGAG AATCACCAGCACTGGCACACGGTAGTCAAAGAGGCATGTCTGACTCAGGGAATGACCTTATATAGCTACGGCATGCTGCTCCCATGTGGG GTAGACCAGTTCCATGGCACTGAATATGTGTGCTGCCCTCAGACAAAGATTATTGGATCTGTGTCAAAAGAAGAGGAAGAGGAAGATGAA GAGGAAGAGGAAGAGGAAGATGAAGAGGAAGACTATGATGTTTATAAAAGTGAATTTCCTACTGAAGCAGATCTGGAAGACTTCACAGAA GCAGCTGTGGATGAGGATGATGAGGATGAGGAAGAAGGGGAGGAAGTGGTGGAGGACCGAGATTACTACTATGACACCTTCAAAGGAGAT GACTACAATGAGGAGAATCCTACTGAACCCGGCAGCGACGGCACCATGTCAGACAAGGAAATTACTCATGATGTCAAAGCTGTCTGCTCC CAGGAGGCGATGACGGGGCCCTGCCGGGCCGTGATGCCTCGTTGGTACTTCGACCTCTCCAAGGGAAAGTGCGTGCGCTTTATATATGGT GGCTGCGGCGGCAACAGGAACAATTTTGAGTCTGAGGATTATTGTATGGCTGTGTGTAAAGCGATGATTCCTCCAACTCCTCTGCCAACC AATGATGTTGATGTGTATTTCGAGACCTCTGCAGATGATAATGAGCATGCTCGCTTCCAGAAGGCTAAGGAGCAGCTGGAGATTCGGCAC CGCAACCGAATGGACAGGGTAAAGAAGGAATGGGAAGAGGCAGAGCTTCAAGCTAAGAACCTCCCCAAAGCAGAGAGGCAGACTCTGATT CAGTGGAAGATAGATGATAAGCCTGTAAAAATTGACAAGTGGGATGGATCAGCTGTGAAAAACTCTTTGGATGATTCTGCCAAAAAGGTA CTTCTGGAAAAATACAAATATGTGGAGAATTTTGGTCTAATTGATGGTCGCCTCACCATCTGTACAATCTCCTGTTTCTTTGCCATAGTG GCTTTGATTTGGGATTATATGCACCCCTTTCCAGAGTCCAAACCCGTTTTGGCTTTGTGTGTCATATCCTATTTTGTGATGATGGGGATT CTGACCATTTATACCTCATATAAGGAGAAGAGCATCTTTCTCGTGGCCCACAGGAAAGATCCTACAGGAATGGATCCTGATGATATTTGG CAGCTGTCCTCCAGTCTTAAAAGGTTTGATGACAAATACACCTTGAAGCTGACCTTCATCAGTGGGAGAACAAAGCAGCAGCGGGAAGCC GAGTTCACAAAGTCCATTGCTAAGTTTTTTGACCACAGTGGGACACTGGTCATGGATGCATATGAGCCTGAAATATCCAGGCTCCATGAC AGTCTTGCCATAGAAAGAAAAATAAAGTAGCCAATTCTAAAAGTAGCCCTCTTTCTCCTGGATCTTGCTGAATTAGTGGCTTGGGGGGTG GGGGAGATAAAAAGAACTTAAAATGGGTAAAGTAAGAAATGTTAAAAAGTCCCTGTTTTGTCCTGAAATTTTAGTCTATTCTGGGTAAAT AGGATTTTCTGACACAGATATGAGAAGTTGTAGCTCTGATGTCTAGCTGTAGTCTCCTTGATCTGCTGATTGCATTATTTTAATTTGCTT TTCTGGGAAAGCAGTTTTGCTAAAAGCTGTACAGACTTTTTCTTTTGTACCTAGCAGTACTTTATATAGTATAGCTTTGGGCCATGTAGC ATTTTAAGACTCAATTTTAAAAAATTATTAATCTGTTGCTGACTCTTAATTCCTATTTCAATATGTGTTTCCTTGAAGAATTCAGGATAC AACTTCTTGTGTATGACAGCTTTCCTTCACACACTATTTTTGTGGGTGTGTATATATCTGATTTGGGAAGAATTTAAAAAACACATAGCT TTTTAATTTGTTTGAAACAGACTTTCTGCCTGTTACATTTTTGCTTTTAACCAATTAAAGAAGCCAATGGCATTTTAGTTTTATATTGTG TTTTCCACTAGTATATCCCTGTTGATTTGTTTGTGCCTTTTATTAACTGCCATTTTCTAAAATTTTTTTCAATAAAAGGAAGGAAGATGT GAAAAAAATGGAGTCATAGTTTTGATGGAGAGAACAGAGAAACAAGTGTTAACATCTTTCTACTATAGGTTTTTTTCATTTTTAGGCTAT TTTACTTGTCAAAGGCCCCTGAGAACCTGTAGCTAAGGAACTCTTAGCTTTCCAGTGATAATAACAATAATAACAACATTCTGTACTTAC TTTGTGCCAGAAATGCTCCAAGTACTTTACATGTGTTAATAATGCTCACAGCAATCCTAAGAGGCAGGTGCTGTTATTATCCCCATTTTA CACATGAGGAAACTGAGATACAAAAGTTAAATAATTGTCACACAGCTAGTGATAGAACTGGGATTCAAACCTGGGGAGTCCGGCTTCAGA GTTTGTGGTCCTGCAGAGACAAAACAGCCGCTTTTCCAGTATTTTCCCAGTATGGTCAGAGAAGACCTGGGTGCTTGCCAAGATCCTTTG ACCTTTAGGAATATTTCCCTACAGCCTTACAAAACATCAATTTTGGCTGAGCCTAGTACCCAACACTATATTCAGTTTGTAAGAAATTAC CATTATCACATTTCCTGTTTGTCTTGGAGAGGTTGTCCTATCTCGCACCACATGGTAGGGAATTGTGAACAACACTGGACAGAAAGTTAA AGCCTTGGATTCTGTACTCTTCATTCCTGTAAACCTTGGGTAAGTTTCGGAATTCTCTGTGAGCTTCTTAAAGTTTTTGAAAGCATGTAA CCGGATAAGTGTATTTTTACAATGGAGGAGTTACAGTCATCTTGGTATTTGTGGGAGATTGGTTCCAGGATCCCCAAGCATACCAAAATC CAAGGATGCTCAAGTCCCTTATATAAAATGGTATAGCATTTGCATATAACCTACACACATCCTCCCATATACTTTTAATCACCTCTGGAT TACCTATAATACCTAATATAATGTAAATGCTATGTAAATAGTTATACTGCATTGGTTTTTTAATTTATATTTTTTGTTATTTTTTAAAAT ATATTTTTAATCCATGGTTGGTTAAATCTGTAGATATAGAGGGCCAACTGTACTGTTAGACACAAGGGTCTCGAGGCTTGCAGATAGAGA CTGAATAACCCTCTCCATGATGATCCCTTAGAGTTCCCCCACTGTGCCTTTTTCTTTACATGTGCATGCAAACATGTGTCTCCACATACA TTTTTTTTAACAAAAATTGAATTATGTTGATATATGTCCTGTAATTTGTGTTTTAAACTTAATATATCTTAGGCATTTTCCCTGTGTGTG >In-frame_ENST00000338167_ENST00000263672_TCGA-44-7669-01A_APLP2_chr11_129997735_+_SPCS2_chr11_74676079_length(amino acids)=620AA_start in transcript=57_stop in transcript=1919 MAATGTAAAAATGRLLLLLLVGLTAPALALAGYIEALAANAGTGFAVAEPQIAMFCGKLNMHVNIQTGKWEPDPTGTKSCFETKEEVLQY CQEMYPELQITNVMEANQRVSIDNWCRRDKKQCKSRFVTPFKCLVGEFVSDVLLVPEKCQFFHKERMEVCENHQHWHTVVKEACLTQGMT LYSYGMLLPCGVDQFHGTEYVCCPQTKIIGSVSKEEEEEDEEEEEEEDEEEDYDVYKSEFPTEADLEDFTEAAVDEDDEDEEEGEEVVED RDYYYDTFKGDDYNEENPTEPGSDGTMSDKEITHDVKAVCSQEAMTGPCRAVMPRWYFDLSKGKCVRFIYGGCGGNRNNFESEDYCMAVC KAMIPPTPLPTNDVDVYFETSADDNEHARFQKAKEQLEIRHRNRMDRVKKEWEEAELQAKNLPKAERQTLIQWKIDDKPVKIDKWDGSAV KNSLDDSAKKVLLEKYKYVENFGLIDGRLTICTISCFFAIVALIWDYMHPFPESKPVLALCVISYFVMMGILTIYTSYKEKSIFLVAHRK -------------------------------------------------------------- >In-frame_ENST00000338167_ENST00000530257_TCGA-44-7669-01A_APLP2_chr11_129997735_+_SPCS2_chr11_74676079_length(transcript)=1826nt_BP=1353nt GCGAGGAGTCCGAGTGTGTGAGCTTGAGAGCCGCGCGCTAGAGCGACCCGGCGAGGGATGGCGGCCACCGGGACCGCGGCCGCCGCAGCC ACGGGCAGGCTCCTGCTTCTGCTGCTGGTGGGGCTCACGGCGCCTGCCTTGGCGCTGGCCGGCTACATCGAGGCTCTTGCAGCCAATGCC GGAACAGGATTTGCTGTTGCTGAGCCTCAAATCGCAATGTTTTGTGGGAAGTTAAATATGCATGTGAACATTCAGACTGGGAAATGGGAA CCTGATCCAACAGGCACCAAGAGCTGCTTTGAAACAAAAGAAGAAGTTCTTCAGTACTGTCAGGAGATGTATCCAGAGCTACAGATCACA AATGTGATGGAGGCAAACCAGCGGGTTAGTATTGACAACTGGTGCCGGAGGGACAAAAAGCAATGCAAGAGTCGCTTTGTTACACCTTTC AAGTGTCTCGTGGGTGAATTTGTAAGTGATGTCCTGCTAGTTCCAGAAAAGTGCCAGTTTTTCCACAAAGAGCGGATGGAGGTGTGTGAG AATCACCAGCACTGGCACACGGTAGTCAAAGAGGCATGTCTGACTCAGGGAATGACCTTATATAGCTACGGCATGCTGCTCCCATGTGGG GTAGACCAGTTCCATGGCACTGAATATGTGTGCTGCCCTCAGACAAAGATTATTGGATCTGTGTCAAAAGAAGAGGAAGAGGAAGATGAA GAGGAAGAGGAAGAGGAAGATGAAGAGGAAGACTATGATGTTTATAAAAGTGAATTTCCTACTGAAGCAGATCTGGAAGACTTCACAGAA GCAGCTGTGGATGAGGATGATGAGGATGAGGAAGAAGGGGAGGAAGTGGTGGAGGACCGAGATTACTACTATGACACCTTCAAAGGAGAT GACTACAATGAGGAGAATCCTACTGAACCCGGCAGCGACGGCACCATGTCAGACAAGGAAATTACTCATGATGTCAAAGCTGTCTGCTCC CAGGAGGCGATGACGGGGCCCTGCCGGGCCGTGATGCCTCGTTGGTACTTCGACCTCTCCAAGGGAAAGTGCGTGCGCTTTATATATGGT GGCTGCGGCGGCAACAGGAACAATTTTGAGTCTGAGGATTATTGTATGGCTGTGTGTAAAGCGATGATTCCTCCAACTCCTCTGCCAACC AATGATGTTGATGTGTATTTCGAGACCTCTGCAGATGATAATGAGCATGCTCGCTTCCAGAAGGCTAAGGAGCAGCTGGAGATTCGGCAC CGCAACCGAATGGACAGGGTAAAGAAGGAATGGGAAGAGGCAGAGCTTCAAGCTAAGAACCTCCCCAAAGCAGAGAGGCAGACTCTGATT CAGTGGAAGATAGATGATAAGCCTGTAAAAATTGACAAGTGGGATGGATCAGCTGTGAAAAACTCTTTGGATGATTCTGCCAAAAAGGAG AAGAGCATCTTTCTCGTGGCCCACAGGAAAGATCCTACAGGAATGGATCCTGATGATATTTGGCAGCTGTCCTCCAGTCTTAAAAGGTTT GATGACAAATACACCTTGAAGCTGACCTTCATCAGTGGGAGAACAAAGCAGCAGCGGGAAGCCGAGTTCACAAAGTCCATTGCTAAGTTT TTTGACCACAGTGGGACACTGGTCATGGATGCATATGAGCCTGAAATATCCAGGCTCCATGACAGTCTTGCCATAGAAAGAAAAATAAAG TAGCCAATTCTAAAAGTAGCCCTCTTTCTCCTGGATCTTGCTGAATTAGTGGCTTGGGGGGTGGGGGAGATAAAAAGAACTTAAAATGGG >In-frame_ENST00000338167_ENST00000530257_TCGA-44-7669-01A_APLP2_chr11_129997735_+_SPCS2_chr11_74676079_length(amino acids)=551AA_start in transcript=57_stop in transcript=1712 MAATGTAAAAATGRLLLLLLVGLTAPALALAGYIEALAANAGTGFAVAEPQIAMFCGKLNMHVNIQTGKWEPDPTGTKSCFETKEEVLQY CQEMYPELQITNVMEANQRVSIDNWCRRDKKQCKSRFVTPFKCLVGEFVSDVLLVPEKCQFFHKERMEVCENHQHWHTVVKEACLTQGMT LYSYGMLLPCGVDQFHGTEYVCCPQTKIIGSVSKEEEEEDEEEEEEEDEEEDYDVYKSEFPTEADLEDFTEAAVDEDDEDEEEGEEVVED RDYYYDTFKGDDYNEENPTEPGSDGTMSDKEITHDVKAVCSQEAMTGPCRAVMPRWYFDLSKGKCVRFIYGGCGGNRNNFESEDYCMAVC KAMIPPTPLPTNDVDVYFETSADDNEHARFQKAKEQLEIRHRNRMDRVKKEWEEAELQAKNLPKAERQTLIQWKIDDKPVKIDKWDGSAV KNSLDDSAKKEKSIFLVAHRKDPTGMDPDDIWQLSSSLKRFDDKYTLKLTFISGRTKQQREAEFTKSIAKFFDHSGTLVMDAYEPEISRL -------------------------------------------------------------- >In-frame_ENST00000278756_ENST00000263672_TCGA-44-7669-01A_APLP2_chr11_129997735_+_SPCS2_chr11_74676079_length(transcript)=3926nt_BP=1371nt TTTGTTGCCAGGTGGACGCGGCCCCGGCCTTCGCGCGCGGCAGGGATGCTGCGAGCCCCGGGGGAGCTCCCGCGCCAGGCCGCCCGCTGC TCCCTCTGCCGCCTGGGGCCGGGTCGCGGACGCGCATTTTTTAAGTGGCGCTGTTTGCCTGCGTCCGTAGACCGAGGAAACCCGCTCTGG GCTCTTGCAGCCAATGCCGGAACAGGATTTGCTGTTGCTGAGCCTCAAATCGCAATGTTTTGTGGGAAGTTAAATATGCATGTGAACATT CAGACTGGGAAATGGGAACCTGATCCAACAGGCACCAAGAGCTGCTTTGAAACAAAAGAAGAAGTTCTTCAGTACTGTCAGGAGATGTAT CCAGAGCTACAGATCACAAATGTGATGGAGGCAAACCAGCGGGTTAGTATTGACAACTGGTGCCGGAGGGACAAAAAGCAATGCAAGAGT CGCTTTGTTACACCTTTCAAGTGTCTCGTGGGTGAATTTGTAAGTGATGTCCTGCTAGTTCCAGAAAAGTGCCAGTTTTTCCACAAAGAG CGGATGGAGGTGTGTGAGAATCACCAGCACTGGCACACGGTAGTCAAAGAGGCATGTCTGACTCAGGGAATGACCTTATATAGCTACGGC ATGCTGCTCCCATGTGGGGTAGACCAGTTCCATGGCACTGAATATGTGTGCTGCCCTCAGACAAAGATTATTGGATCTGTGTCAAAAGAA GAGGAAGAGGAAGATGAAGAGGAAGAGGAAGAGGAAGATGAAGAGGAAGACTATGATGTTTATAAAAGTGAATTTCCTACTGAAGCAGAT CTGGAAGACTTCACAGAAGCAGCTGTGGATGAGGATGATGAGGATGAGGAAGAAGGGGAGGAAGTGGTGGAGGACCGAGATTACTACTAT GACACCTTCAAAGGAGATGACTACAATGAGGAGAATCCTACTGAACCCGGCAGCGACGGCACCATGTCAGACAAGGAAATTACTCATGAT GTCAAAGCTGTCTGCTCCCAGGAGGCGATGACGGGGCCCTGCCGGGCCGTGATGCCTCGTTGGTACTTCGACCTCTCCAAGGGAAAGTGC GTGCGCTTTATATATGGTGGCTGCGGCGGCAACAGGAACAATTTTGAGTCTGAGGATTATTGTATGGCTGTGTGTAAAGCGATGATTCCT CCAACTCCTCTGCCAACCAATGATGTTGATGTGTATTTCGAGACCTCTGCAGATGATAATGAGCATGCTCGCTTCCAGAAGGCTAAGGAG CAGCTGGAGATTCGGCACCGCAACCGAATGGACAGGGTAAAGAAGGAATGGGAAGAGGCAGAGCTTCAAGCTAAGAACCTCCCCAAAGCA GAGAGGCAGACTCTGATTCAGTGGAAGATAGATGATAAGCCTGTAAAAATTGACAAGTGGGATGGATCAGCTGTGAAAAACTCTTTGGAT GATTCTGCCAAAAAGGTACTTCTGGAAAAATACAAATATGTGGAGAATTTTGGTCTAATTGATGGTCGCCTCACCATCTGTACAATCTCC TGTTTCTTTGCCATAGTGGCTTTGATTTGGGATTATATGCACCCCTTTCCAGAGTCCAAACCCGTTTTGGCTTTGTGTGTCATATCCTAT TTTGTGATGATGGGGATTCTGACCATTTATACCTCATATAAGGAGAAGAGCATCTTTCTCGTGGCCCACAGGAAAGATCCTACAGGAATG GATCCTGATGATATTTGGCAGCTGTCCTCCAGTCTTAAAAGGTTTGATGACAAATACACCTTGAAGCTGACCTTCATCAGTGGGAGAACA AAGCAGCAGCGGGAAGCCGAGTTCACAAAGTCCATTGCTAAGTTTTTTGACCACAGTGGGACACTGGTCATGGATGCATATGAGCCTGAA ATATCCAGGCTCCATGACAGTCTTGCCATAGAAAGAAAAATAAAGTAGCCAATTCTAAAAGTAGCCCTCTTTCTCCTGGATCTTGCTGAA TTAGTGGCTTGGGGGGTGGGGGAGATAAAAAGAACTTAAAATGGGTAAAGTAAGAAATGTTAAAAAGTCCCTGTTTTGTCCTGAAATTTT AGTCTATTCTGGGTAAATAGGATTTTCTGACACAGATATGAGAAGTTGTAGCTCTGATGTCTAGCTGTAGTCTCCTTGATCTGCTGATTG CATTATTTTAATTTGCTTTTCTGGGAAAGCAGTTTTGCTAAAAGCTGTACAGACTTTTTCTTTTGTACCTAGCAGTACTTTATATAGTAT AGCTTTGGGCCATGTAGCATTTTAAGACTCAATTTTAAAAAATTATTAATCTGTTGCTGACTCTTAATTCCTATTTCAATATGTGTTTCC TTGAAGAATTCAGGATACAACTTCTTGTGTATGACAGCTTTCCTTCACACACTATTTTTGTGGGTGTGTATATATCTGATTTGGGAAGAA TTTAAAAAACACATAGCTTTTTAATTTGTTTGAAACAGACTTTCTGCCTGTTACATTTTTGCTTTTAACCAATTAAAGAAGCCAATGGCA TTTTAGTTTTATATTGTGTTTTCCACTAGTATATCCCTGTTGATTTGTTTGTGCCTTTTATTAACTGCCATTTTCTAAAATTTTTTTCAA TAAAAGGAAGGAAGATGTGAAAAAAATGGAGTCATAGTTTTGATGGAGAGAACAGAGAAACAAGTGTTAACATCTTTCTACTATAGGTTT TTTTCATTTTTAGGCTATTTTACTTGTCAAAGGCCCCTGAGAACCTGTAGCTAAGGAACTCTTAGCTTTCCAGTGATAATAACAATAATA ACAACATTCTGTACTTACTTTGTGCCAGAAATGCTCCAAGTACTTTACATGTGTTAATAATGCTCACAGCAATCCTAAGAGGCAGGTGCT GTTATTATCCCCATTTTACACATGAGGAAACTGAGATACAAAAGTTAAATAATTGTCACACAGCTAGTGATAGAACTGGGATTCAAACCT GGGGAGTCCGGCTTCAGAGTTTGTGGTCCTGCAGAGACAAAACAGCCGCTTTTCCAGTATTTTCCCAGTATGGTCAGAGAAGACCTGGGT GCTTGCCAAGATCCTTTGACCTTTAGGAATATTTCCCTACAGCCTTACAAAACATCAATTTTGGCTGAGCCTAGTACCCAACACTATATT CAGTTTGTAAGAAATTACCATTATCACATTTCCTGTTTGTCTTGGAGAGGTTGTCCTATCTCGCACCACATGGTAGGGAATTGTGAACAA CACTGGACAGAAAGTTAAAGCCTTGGATTCTGTACTCTTCATTCCTGTAAACCTTGGGTAAGTTTCGGAATTCTCTGTGAGCTTCTTAAA GTTTTTGAAAGCATGTAACCGGATAAGTGTATTTTTACAATGGAGGAGTTACAGTCATCTTGGTATTTGTGGGAGATTGGTTCCAGGATC CCCAAGCATACCAAAATCCAAGGATGCTCAAGTCCCTTATATAAAATGGTATAGCATTTGCATATAACCTACACACATCCTCCCATATAC TTTTAATCACCTCTGGATTACCTATAATACCTAATATAATGTAAATGCTATGTAAATAGTTATACTGCATTGGTTTTTTAATTTATATTT TTTGTTATTTTTTAAAATATATTTTTAATCCATGGTTGGTTAAATCTGTAGATATAGAGGGCCAACTGTACTGTTAGACACAAGGGTCTC GAGGCTTGCAGATAGAGACTGAATAACCCTCTCCATGATGATCCCTTAGAGTTCCCCCACTGTGCCTTTTTCTTTACATGTGCATGCAAA CATGTGTCTCCACATACATTTTTTTTAACAAAAATTGAATTATGTTGATATATGTCCTGTAATTTGTGTTTTAAACTTAATATATCTTAG >In-frame_ENST00000278756_ENST00000263672_TCGA-44-7669-01A_APLP2_chr11_129997735_+_SPCS2_chr11_74676079_length(amino acids)=630AA_start in transcript=45_stop in transcript=1937 MLRAPGELPRQAARCSLCRLGPGRGRAFFKWRCLPASVDRGNPLWALAANAGTGFAVAEPQIAMFCGKLNMHVNIQTGKWEPDPTGTKSC FETKEEVLQYCQEMYPELQITNVMEANQRVSIDNWCRRDKKQCKSRFVTPFKCLVGEFVSDVLLVPEKCQFFHKERMEVCENHQHWHTVV KEACLTQGMTLYSYGMLLPCGVDQFHGTEYVCCPQTKIIGSVSKEEEEEDEEEEEEEDEEEDYDVYKSEFPTEADLEDFTEAAVDEDDED EEEGEEVVEDRDYYYDTFKGDDYNEENPTEPGSDGTMSDKEITHDVKAVCSQEAMTGPCRAVMPRWYFDLSKGKCVRFIYGGCGGNRNNF ESEDYCMAVCKAMIPPTPLPTNDVDVYFETSADDNEHARFQKAKEQLEIRHRNRMDRVKKEWEEAELQAKNLPKAERQTLIQWKIDDKPV KIDKWDGSAVKNSLDDSAKKVLLEKYKYVENFGLIDGRLTICTISCFFAIVALIWDYMHPFPESKPVLALCVISYFVMMGILTIYTSYKE KSIFLVAHRKDPTGMDPDDIWQLSSSLKRFDDKYTLKLTFISGRTKQQREAEFTKSIAKFFDHSGTLVMDAYEPEISRLHDSLAIERKIK -------------------------------------------------------------- >In-frame_ENST00000278756_ENST00000530257_TCGA-44-7669-01A_APLP2_chr11_129997735_+_SPCS2_chr11_74676079_length(transcript)=1844nt_BP=1371nt TTTGTTGCCAGGTGGACGCGGCCCCGGCCTTCGCGCGCGGCAGGGATGCTGCGAGCCCCGGGGGAGCTCCCGCGCCAGGCCGCCCGCTGC TCCCTCTGCCGCCTGGGGCCGGGTCGCGGACGCGCATTTTTTAAGTGGCGCTGTTTGCCTGCGTCCGTAGACCGAGGAAACCCGCTCTGG GCTCTTGCAGCCAATGCCGGAACAGGATTTGCTGTTGCTGAGCCTCAAATCGCAATGTTTTGTGGGAAGTTAAATATGCATGTGAACATT CAGACTGGGAAATGGGAACCTGATCCAACAGGCACCAAGAGCTGCTTTGAAACAAAAGAAGAAGTTCTTCAGTACTGTCAGGAGATGTAT CCAGAGCTACAGATCACAAATGTGATGGAGGCAAACCAGCGGGTTAGTATTGACAACTGGTGCCGGAGGGACAAAAAGCAATGCAAGAGT CGCTTTGTTACACCTTTCAAGTGTCTCGTGGGTGAATTTGTAAGTGATGTCCTGCTAGTTCCAGAAAAGTGCCAGTTTTTCCACAAAGAG CGGATGGAGGTGTGTGAGAATCACCAGCACTGGCACACGGTAGTCAAAGAGGCATGTCTGACTCAGGGAATGACCTTATATAGCTACGGC ATGCTGCTCCCATGTGGGGTAGACCAGTTCCATGGCACTGAATATGTGTGCTGCCCTCAGACAAAGATTATTGGATCTGTGTCAAAAGAA GAGGAAGAGGAAGATGAAGAGGAAGAGGAAGAGGAAGATGAAGAGGAAGACTATGATGTTTATAAAAGTGAATTTCCTACTGAAGCAGAT CTGGAAGACTTCACAGAAGCAGCTGTGGATGAGGATGATGAGGATGAGGAAGAAGGGGAGGAAGTGGTGGAGGACCGAGATTACTACTAT GACACCTTCAAAGGAGATGACTACAATGAGGAGAATCCTACTGAACCCGGCAGCGACGGCACCATGTCAGACAAGGAAATTACTCATGAT GTCAAAGCTGTCTGCTCCCAGGAGGCGATGACGGGGCCCTGCCGGGCCGTGATGCCTCGTTGGTACTTCGACCTCTCCAAGGGAAAGTGC GTGCGCTTTATATATGGTGGCTGCGGCGGCAACAGGAACAATTTTGAGTCTGAGGATTATTGTATGGCTGTGTGTAAAGCGATGATTCCT CCAACTCCTCTGCCAACCAATGATGTTGATGTGTATTTCGAGACCTCTGCAGATGATAATGAGCATGCTCGCTTCCAGAAGGCTAAGGAG CAGCTGGAGATTCGGCACCGCAACCGAATGGACAGGGTAAAGAAGGAATGGGAAGAGGCAGAGCTTCAAGCTAAGAACCTCCCCAAAGCA GAGAGGCAGACTCTGATTCAGTGGAAGATAGATGATAAGCCTGTAAAAATTGACAAGTGGGATGGATCAGCTGTGAAAAACTCTTTGGAT GATTCTGCCAAAAAGGAGAAGAGCATCTTTCTCGTGGCCCACAGGAAAGATCCTACAGGAATGGATCCTGATGATATTTGGCAGCTGTCC TCCAGTCTTAAAAGGTTTGATGACAAATACACCTTGAAGCTGACCTTCATCAGTGGGAGAACAAAGCAGCAGCGGGAAGCCGAGTTCACA AAGTCCATTGCTAAGTTTTTTGACCACAGTGGGACACTGGTCATGGATGCATATGAGCCTGAAATATCCAGGCTCCATGACAGTCTTGCC ATAGAAAGAAAAATAAAGTAGCCAATTCTAAAAGTAGCCCTCTTTCTCCTGGATCTTGCTGAATTAGTGGCTTGGGGGGTGGGGGAGATA >In-frame_ENST00000278756_ENST00000530257_TCGA-44-7669-01A_APLP2_chr11_129997735_+_SPCS2_chr11_74676079_length(amino acids)=561AA_start in transcript=45_stop in transcript=1730 MLRAPGELPRQAARCSLCRLGPGRGRAFFKWRCLPASVDRGNPLWALAANAGTGFAVAEPQIAMFCGKLNMHVNIQTGKWEPDPTGTKSC FETKEEVLQYCQEMYPELQITNVMEANQRVSIDNWCRRDKKQCKSRFVTPFKCLVGEFVSDVLLVPEKCQFFHKERMEVCENHQHWHTVV KEACLTQGMTLYSYGMLLPCGVDQFHGTEYVCCPQTKIIGSVSKEEEEEDEEEEEEEDEEEDYDVYKSEFPTEADLEDFTEAAVDEDDED EEEGEEVVEDRDYYYDTFKGDDYNEENPTEPGSDGTMSDKEITHDVKAVCSQEAMTGPCRAVMPRWYFDLSKGKCVRFIYGGCGGNRNNF ESEDYCMAVCKAMIPPTPLPTNDVDVYFETSADDNEHARFQKAKEQLEIRHRNRMDRVKKEWEEAELQAKNLPKAERQTLIQWKIDDKPV KIDKWDGSAVKNSLDDSAKKEKSIFLVAHRKDPTGMDPDDIWQLSSSLKRFDDKYTLKLTFISGRTKQQREAEFTKSIAKFFDHSGTLVM -------------------------------------------------------------- >In-frame_ENST00000543137_ENST00000263672_TCGA-44-7669-01A_APLP2_chr11_129997735_+_SPCS2_chr11_74676079_length(transcript)=3926nt_BP=1371nt TTTGTTGCCAGGTGGACGCGGCCCCGGCCTTCGCGCGCGGCAGGGATGCTGCGAGCCCCGGGGGAGCTCCCGCGCCAGGCCGCCCGCTGC TCCCTCTGCCGCCTGGGGCCGGGTCGCGGACGCGCATTTTTTAAGTGGCGCTGTTTGCCTGCGTCCGTAGACCGAGGAAACCCGCTCTGG GCTCTTGCAGCCAATGCCGGAACAGGATTTGCTGTTGCTGAGCCTCAAATCGCAATGTTTTGTGGGAAGTTAAATATGCATGTGAACATT CAGACTGGGAAATGGGAACCTGATCCAACAGGCACCAAGAGCTGCTTTGAAACAAAAGAAGAAGTTCTTCAGTACTGTCAGGAGATGTAT CCAGAGCTACAGATCACAAATGTGATGGAGGCAAACCAGCGGGTTAGTATTGACAACTGGTGCCGGAGGGACAAAAAGCAATGCAAGAGT CGCTTTGTTACACCTTTCAAGTGTCTCGTGGGTGAATTTGTAAGTGATGTCCTGCTAGTTCCAGAAAAGTGCCAGTTTTTCCACAAAGAG CGGATGGAGGTGTGTGAGAATCACCAGCACTGGCACACGGTAGTCAAAGAGGCATGTCTGACTCAGGGAATGACCTTATATAGCTACGGC ATGCTGCTCCCATGTGGGGTAGACCAGTTCCATGGCACTGAATATGTGTGCTGCCCTCAGACAAAGATTATTGGATCTGTGTCAAAAGAA GAGGAAGAGGAAGATGAAGAGGAAGAGGAAGAGGAAGATGAAGAGGAAGACTATGATGTTTATAAAAGTGAATTTCCTACTGAAGCAGAT CTGGAAGACTTCACAGAAGCAGCTGTGGATGAGGATGATGAGGATGAGGAAGAAGGGGAGGAAGTGGTGGAGGACCGAGATTACTACTAT GACACCTTCAAAGGAGATGACTACAATGAGGAGAATCCTACTGAACCCGGCAGCGACGGCACCATGTCAGACAAGGAAATTACTCATGAT GTCAAAGCTGTCTGCTCCCAGGAGGCGATGACGGGGCCCTGCCGGGCCGTGATGCCTCGTTGGTACTTCGACCTCTCCAAGGGAAAGTGC GTGCGCTTTATATATGGTGGCTGCGGCGGCAACAGGAACAATTTTGAGTCTGAGGATTATTGTATGGCTGTGTGTAAAGCGATGATTCCT CCAACTCCTCTGCCAACCAATGATGTTGATGTGTATTTCGAGACCTCTGCAGATGATAATGAGCATGCTCGCTTCCAGAAGGCTAAGGAG CAGCTGGAGATTCGGCACCGCAACCGAATGGACAGGGTAAAGAAGGAATGGGAAGAGGCAGAGCTTCAAGCTAAGAACCTCCCCAAAGCA GAGAGGCAGACTCTGATTCAGTGGAAGATAGATGATAAGCCTGTAAAAATTGACAAGTGGGATGGATCAGCTGTGAAAAACTCTTTGGAT GATTCTGCCAAAAAGGTACTTCTGGAAAAATACAAATATGTGGAGAATTTTGGTCTAATTGATGGTCGCCTCACCATCTGTACAATCTCC TGTTTCTTTGCCATAGTGGCTTTGATTTGGGATTATATGCACCCCTTTCCAGAGTCCAAACCCGTTTTGGCTTTGTGTGTCATATCCTAT TTTGTGATGATGGGGATTCTGACCATTTATACCTCATATAAGGAGAAGAGCATCTTTCTCGTGGCCCACAGGAAAGATCCTACAGGAATG GATCCTGATGATATTTGGCAGCTGTCCTCCAGTCTTAAAAGGTTTGATGACAAATACACCTTGAAGCTGACCTTCATCAGTGGGAGAACA AAGCAGCAGCGGGAAGCCGAGTTCACAAAGTCCATTGCTAAGTTTTTTGACCACAGTGGGACACTGGTCATGGATGCATATGAGCCTGAA ATATCCAGGCTCCATGACAGTCTTGCCATAGAAAGAAAAATAAAGTAGCCAATTCTAAAAGTAGCCCTCTTTCTCCTGGATCTTGCTGAA TTAGTGGCTTGGGGGGTGGGGGAGATAAAAAGAACTTAAAATGGGTAAAGTAAGAAATGTTAAAAAGTCCCTGTTTTGTCCTGAAATTTT AGTCTATTCTGGGTAAATAGGATTTTCTGACACAGATATGAGAAGTTGTAGCTCTGATGTCTAGCTGTAGTCTCCTTGATCTGCTGATTG CATTATTTTAATTTGCTTTTCTGGGAAAGCAGTTTTGCTAAAAGCTGTACAGACTTTTTCTTTTGTACCTAGCAGTACTTTATATAGTAT AGCTTTGGGCCATGTAGCATTTTAAGACTCAATTTTAAAAAATTATTAATCTGTTGCTGACTCTTAATTCCTATTTCAATATGTGTTTCC TTGAAGAATTCAGGATACAACTTCTTGTGTATGACAGCTTTCCTTCACACACTATTTTTGTGGGTGTGTATATATCTGATTTGGGAAGAA TTTAAAAAACACATAGCTTTTTAATTTGTTTGAAACAGACTTTCTGCCTGTTACATTTTTGCTTTTAACCAATTAAAGAAGCCAATGGCA TTTTAGTTTTATATTGTGTTTTCCACTAGTATATCCCTGTTGATTTGTTTGTGCCTTTTATTAACTGCCATTTTCTAAAATTTTTTTCAA TAAAAGGAAGGAAGATGTGAAAAAAATGGAGTCATAGTTTTGATGGAGAGAACAGAGAAACAAGTGTTAACATCTTTCTACTATAGGTTT TTTTCATTTTTAGGCTATTTTACTTGTCAAAGGCCCCTGAGAACCTGTAGCTAAGGAACTCTTAGCTTTCCAGTGATAATAACAATAATA ACAACATTCTGTACTTACTTTGTGCCAGAAATGCTCCAAGTACTTTACATGTGTTAATAATGCTCACAGCAATCCTAAGAGGCAGGTGCT GTTATTATCCCCATTTTACACATGAGGAAACTGAGATACAAAAGTTAAATAATTGTCACACAGCTAGTGATAGAACTGGGATTCAAACCT GGGGAGTCCGGCTTCAGAGTTTGTGGTCCTGCAGAGACAAAACAGCCGCTTTTCCAGTATTTTCCCAGTATGGTCAGAGAAGACCTGGGT GCTTGCCAAGATCCTTTGACCTTTAGGAATATTTCCCTACAGCCTTACAAAACATCAATTTTGGCTGAGCCTAGTACCCAACACTATATT CAGTTTGTAAGAAATTACCATTATCACATTTCCTGTTTGTCTTGGAGAGGTTGTCCTATCTCGCACCACATGGTAGGGAATTGTGAACAA CACTGGACAGAAAGTTAAAGCCTTGGATTCTGTACTCTTCATTCCTGTAAACCTTGGGTAAGTTTCGGAATTCTCTGTGAGCTTCTTAAA GTTTTTGAAAGCATGTAACCGGATAAGTGTATTTTTACAATGGAGGAGTTACAGTCATCTTGGTATTTGTGGGAGATTGGTTCCAGGATC CCCAAGCATACCAAAATCCAAGGATGCTCAAGTCCCTTATATAAAATGGTATAGCATTTGCATATAACCTACACACATCCTCCCATATAC TTTTAATCACCTCTGGATTACCTATAATACCTAATATAATGTAAATGCTATGTAAATAGTTATACTGCATTGGTTTTTTAATTTATATTT TTTGTTATTTTTTAAAATATATTTTTAATCCATGGTTGGTTAAATCTGTAGATATAGAGGGCCAACTGTACTGTTAGACACAAGGGTCTC GAGGCTTGCAGATAGAGACTGAATAACCCTCTCCATGATGATCCCTTAGAGTTCCCCCACTGTGCCTTTTTCTTTACATGTGCATGCAAA CATGTGTCTCCACATACATTTTTTTTAACAAAAATTGAATTATGTTGATATATGTCCTGTAATTTGTGTTTTAAACTTAATATATCTTAG >In-frame_ENST00000543137_ENST00000263672_TCGA-44-7669-01A_APLP2_chr11_129997735_+_SPCS2_chr11_74676079_length(amino acids)=630AA_start in transcript=45_stop in transcript=1937 MLRAPGELPRQAARCSLCRLGPGRGRAFFKWRCLPASVDRGNPLWALAANAGTGFAVAEPQIAMFCGKLNMHVNIQTGKWEPDPTGTKSC FETKEEVLQYCQEMYPELQITNVMEANQRVSIDNWCRRDKKQCKSRFVTPFKCLVGEFVSDVLLVPEKCQFFHKERMEVCENHQHWHTVV KEACLTQGMTLYSYGMLLPCGVDQFHGTEYVCCPQTKIIGSVSKEEEEEDEEEEEEEDEEEDYDVYKSEFPTEADLEDFTEAAVDEDDED EEEGEEVVEDRDYYYDTFKGDDYNEENPTEPGSDGTMSDKEITHDVKAVCSQEAMTGPCRAVMPRWYFDLSKGKCVRFIYGGCGGNRNNF ESEDYCMAVCKAMIPPTPLPTNDVDVYFETSADDNEHARFQKAKEQLEIRHRNRMDRVKKEWEEAELQAKNLPKAERQTLIQWKIDDKPV KIDKWDGSAVKNSLDDSAKKVLLEKYKYVENFGLIDGRLTICTISCFFAIVALIWDYMHPFPESKPVLALCVISYFVMMGILTIYTSYKE KSIFLVAHRKDPTGMDPDDIWQLSSSLKRFDDKYTLKLTFISGRTKQQREAEFTKSIAKFFDHSGTLVMDAYEPEISRLHDSLAIERKIK -------------------------------------------------------------- >In-frame_ENST00000543137_ENST00000530257_TCGA-44-7669-01A_APLP2_chr11_129997735_+_SPCS2_chr11_74676079_length(transcript)=1844nt_BP=1371nt TTTGTTGCCAGGTGGACGCGGCCCCGGCCTTCGCGCGCGGCAGGGATGCTGCGAGCCCCGGGGGAGCTCCCGCGCCAGGCCGCCCGCTGC TCCCTCTGCCGCCTGGGGCCGGGTCGCGGACGCGCATTTTTTAAGTGGCGCTGTTTGCCTGCGTCCGTAGACCGAGGAAACCCGCTCTGG GCTCTTGCAGCCAATGCCGGAACAGGATTTGCTGTTGCTGAGCCTCAAATCGCAATGTTTTGTGGGAAGTTAAATATGCATGTGAACATT CAGACTGGGAAATGGGAACCTGATCCAACAGGCACCAAGAGCTGCTTTGAAACAAAAGAAGAAGTTCTTCAGTACTGTCAGGAGATGTAT CCAGAGCTACAGATCACAAATGTGATGGAGGCAAACCAGCGGGTTAGTATTGACAACTGGTGCCGGAGGGACAAAAAGCAATGCAAGAGT CGCTTTGTTACACCTTTCAAGTGTCTCGTGGGTGAATTTGTAAGTGATGTCCTGCTAGTTCCAGAAAAGTGCCAGTTTTTCCACAAAGAG CGGATGGAGGTGTGTGAGAATCACCAGCACTGGCACACGGTAGTCAAAGAGGCATGTCTGACTCAGGGAATGACCTTATATAGCTACGGC ATGCTGCTCCCATGTGGGGTAGACCAGTTCCATGGCACTGAATATGTGTGCTGCCCTCAGACAAAGATTATTGGATCTGTGTCAAAAGAA GAGGAAGAGGAAGATGAAGAGGAAGAGGAAGAGGAAGATGAAGAGGAAGACTATGATGTTTATAAAAGTGAATTTCCTACTGAAGCAGAT CTGGAAGACTTCACAGAAGCAGCTGTGGATGAGGATGATGAGGATGAGGAAGAAGGGGAGGAAGTGGTGGAGGACCGAGATTACTACTAT GACACCTTCAAAGGAGATGACTACAATGAGGAGAATCCTACTGAACCCGGCAGCGACGGCACCATGTCAGACAAGGAAATTACTCATGAT GTCAAAGCTGTCTGCTCCCAGGAGGCGATGACGGGGCCCTGCCGGGCCGTGATGCCTCGTTGGTACTTCGACCTCTCCAAGGGAAAGTGC GTGCGCTTTATATATGGTGGCTGCGGCGGCAACAGGAACAATTTTGAGTCTGAGGATTATTGTATGGCTGTGTGTAAAGCGATGATTCCT CCAACTCCTCTGCCAACCAATGATGTTGATGTGTATTTCGAGACCTCTGCAGATGATAATGAGCATGCTCGCTTCCAGAAGGCTAAGGAG CAGCTGGAGATTCGGCACCGCAACCGAATGGACAGGGTAAAGAAGGAATGGGAAGAGGCAGAGCTTCAAGCTAAGAACCTCCCCAAAGCA GAGAGGCAGACTCTGATTCAGTGGAAGATAGATGATAAGCCTGTAAAAATTGACAAGTGGGATGGATCAGCTGTGAAAAACTCTTTGGAT GATTCTGCCAAAAAGGAGAAGAGCATCTTTCTCGTGGCCCACAGGAAAGATCCTACAGGAATGGATCCTGATGATATTTGGCAGCTGTCC TCCAGTCTTAAAAGGTTTGATGACAAATACACCTTGAAGCTGACCTTCATCAGTGGGAGAACAAAGCAGCAGCGGGAAGCCGAGTTCACA AAGTCCATTGCTAAGTTTTTTGACCACAGTGGGACACTGGTCATGGATGCATATGAGCCTGAAATATCCAGGCTCCATGACAGTCTTGCC ATAGAAAGAAAAATAAAGTAGCCAATTCTAAAAGTAGCCCTCTTTCTCCTGGATCTTGCTGAATTAGTGGCTTGGGGGGTGGGGGAGATA >In-frame_ENST00000543137_ENST00000530257_TCGA-44-7669-01A_APLP2_chr11_129997735_+_SPCS2_chr11_74676079_length(amino acids)=561AA_start in transcript=45_stop in transcript=1730 MLRAPGELPRQAARCSLCRLGPGRGRAFFKWRCLPASVDRGNPLWALAANAGTGFAVAEPQIAMFCGKLNMHVNIQTGKWEPDPTGTKSC FETKEEVLQYCQEMYPELQITNVMEANQRVSIDNWCRRDKKQCKSRFVTPFKCLVGEFVSDVLLVPEKCQFFHKERMEVCENHQHWHTVV KEACLTQGMTLYSYGMLLPCGVDQFHGTEYVCCPQTKIIGSVSKEEEEEDEEEEEEEDEEEDYDVYKSEFPTEADLEDFTEAAVDEDDED EEEGEEVVEDRDYYYDTFKGDDYNEENPTEPGSDGTMSDKEITHDVKAVCSQEAMTGPCRAVMPRWYFDLSKGKCVRFIYGGCGGNRNNF ESEDYCMAVCKAMIPPTPLPTNDVDVYFETSADDNEHARFQKAKEQLEIRHRNRMDRVKKEWEEAELQAKNLPKAERQTLIQWKIDDKPV KIDKWDGSAVKNSLDDSAKKEKSIFLVAHRKDPTGMDPDDIWQLSSSLKRFDDKYTLKLTFISGRTKQQREAEFTKSIAKFFDHSGTLVM -------------------------------------------------------------- |
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Fusion Gene PPI Analysis for APLP2-SPCS2 |
Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in |
Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
Hgene | Hgene's interactors | Tgene | Tgene's interactors |
- Retained PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
- Lost PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
Hgene | APLP2 | chr11:129997735 | chr11:74676079 | ENST00000263574 | + | 9 | 18 | 749_763 | 432.0 | 764.0 | DAB2 |
Hgene | APLP2 | chr11:129997735 | chr11:74676079 | ENST00000278756 | + | 9 | 17 | 749_763 | 442.0 | 762.0 | DAB2 |
Hgene | APLP2 | chr11:129997735 | chr11:74676079 | ENST00000338167 | + | 9 | 17 | 749_763 | 432.0 | 752.0 | DAB2 |
Hgene | APLP2 | chr11:129997735 | chr11:74676079 | ENST00000345598 | + | 5 | 13 | 749_763 | 203.0 | 523.0 | DAB2 |
Hgene | APLP2 | chr11:129997735 | chr11:74676079 | ENST00000528499 | + | 8 | 16 | 749_763 | 376.0 | 696.0 | DAB2 |
- Retained PPIs, but lost function due to frame-shift fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Related Drugs for APLP2-SPCS2 |
Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.8 2021-05-08) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
Hgene | APLP2 | Q06481 | DB14548 | Zinc sulfate, unspecified form | Ligand | Small molecule | Approved|Experimental |
Hgene | APLP2 | Q06481 | DB14548 | Zinc sulfate, unspecified form | Ligand | Small molecule | Approved|Experimental |
Hgene | APLP2 | Q06481 | DB01593 | Zinc | Cofactor | Small molecule | Approved|Investigational |
Hgene | APLP2 | Q06481 | DB01593 | Zinc | Cofactor | Small molecule | Approved|Investigational |
Hgene | APLP2 | Q06481 | DB14487 | Zinc acetate | Small molecule | Approved|Investigational | |
Hgene | APLP2 | Q06481 | DB14487 | Zinc acetate | Small molecule | Approved|Investigational | |
Hgene | APLP2 | Q06481 | DB14533 | Zinc chloride | Ligand | Small molecule | Approved|Investigational |
Hgene | APLP2 | Q06481 | DB14533 | Zinc chloride | Ligand | Small molecule | Approved|Investigational |
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Related Diseases for APLP2-SPCS2 |
Diseases associated with fusion partners. (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Hgene | APLP2 | C0027746 | Nerve Degeneration | 1 | CTD_human |
Hgene | APLP2 | C0151744 | Myocardial Ischemia | 1 | CTD_human |