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Fusion Gene Summary | |
Fusion Gene ORF analysis | |
Fusion Genomic Features | |
Fusion Protein Features | |
Fusion Gene Sequence | |
Fusion Gene PPI analysis | |
Related Drugs | |
Related Diseases |
Fusion gene:NCALD-UBR5 (FusionGDB2 ID:57160) |
Fusion Gene Summary for NCALD-UBR5 |
Fusion gene summary |
Fusion gene information | Fusion gene name: NCALD-UBR5 | Fusion gene ID: 57160 | Hgene | Tgene | Gene symbol | NCALD | UBR5 | Gene ID | 83988 | 51366 |
Gene name | neurocalcin delta | ubiquitin protein ligase E3 component n-recognin 5 | |
Synonyms | - | DD5|EDD|EDD1|HYD | |
Cytomap | 8q22.3 | 8q22.3 | |
Type of gene | protein-coding | protein-coding | |
Description | neurocalcin-delta | E3 ubiquitin-protein ligase UBR5E3 identified by differential displayE3 ubiquitin-protein ligase, HECT domain-containing 1HECT-type E3 ubiquitin transferase UBR5hyperplastic discs protein homologprogestin-induced protein | |
Modification date | 20200313 | 20200315 | |
UniProtAcc | . | . | |
Ensembl transtripts involved in fusion gene | ENST00000311028, ENST00000395923, ENST00000220931, ENST00000521599, ENST00000522951, ENST00000519508, ENST00000521371, | ENST00000520539, ENST00000220959, ENST00000518205, ENST00000521922, ENST00000519528, | |
Fusion gene scores | * DoF score | 9 X 9 X 9=729 | 14 X 17 X 10=2380 |
# samples | 14 | 19 | |
** MAII score | log2(14/729*10)=-2.38049198738197 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(19/2380*10)=-3.64689024986436 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
Context | PubMed: NCALD [Title/Abstract] AND UBR5 [Title/Abstract] AND fusion [Title/Abstract] | ||
Most frequent breakpoint | NCALD(103032465)-UBR5(103317523), # samples:2 NCALD(103032465)-UBR5(103373854), # samples:2 NCALD(102731480)-UBR5(103266742), # samples:2 | ||
Anticipated loss of major functional domain due to fusion event. | NCALD-UBR5 seems lost the major protein functional domain in Hgene partner, which is a essential gene due to the frame-shifted ORF. NCALD-UBR5 seems lost the major protein functional domain in Tgene partner, which is a CGC due to the frame-shifted ORF. NCALD-UBR5 seems lost the major protein functional domain in Tgene partner, which is a essential gene due to the frame-shifted ORF. NCALD-UBR5 seems lost the major protein functional domain in Tgene partner, which is a epigenetic factor due to the frame-shifted ORF. |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
Partner | Gene | GO ID | GO term | PubMed ID |
Tgene | UBR5 | GO:0000209 | protein polyubiquitination | 21118991|28689657 |
Tgene | UBR5 | GO:0006974 | cellular response to DNA damage stimulus | 12011095 |
Tgene | UBR5 | GO:0010628 | positive regulation of gene expression | 18076571 |
Tgene | UBR5 | GO:0050847 | progesterone receptor signaling pathway | 12011095 |
Tgene | UBR5 | GO:0070936 | protein K48-linked ubiquitination | 28689657 |
Fusion gene breakpoints across NCALD (5'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
Fusion gene breakpoints across UBR5 (3'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Source | Disease | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
ChimerDB4 | CESC | TCGA-VS-A9V0-01A | NCALD | chr8 | 103032465 | - | UBR5 | chr8 | 103317523 | - |
ChimerDB4 | UCEC | TCGA-BK-A0CA-01A | NCALD | chr8 | 103032465 | - | UBR5 | chr8 | 103373854 | - |
ChimerDB4 | UCEC | TCGA-PG-A914-01A | NCALD | chr8 | 102731480 | - | UBR5 | chr8 | 103266742 | - |
ChimerDB4 | UCEC | TCGA-BK-A0CA-01B | NCALD | chr8 | 103032465 | - | UBR5 | chr8 | 103373854 | - |
ChimerDB4 | UCEC | TCGA-A5-A7WK-01A | NCALD | chr8 | 103136465 | - | UBR5 | chr8 | 103279235 | - |
ChimerDB4 | UCEC | TCGA-PG-A914-01A | NCALD | chr8 | 102731480 | - | UBR5 | chr8 | 103266742 | - |
ChimerDB4 | CESC | TCGA-VS-A9V0-01A | NCALD | chr8 | 103032465 | - | UBR5 | chr8 | 103317523 | - |
Top |
Fusion Gene ORF analysis for NCALD-UBR5 |
Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
5UTR-3CDS | ENST00000311028 | ENST00000520539 | NCALD | chr8 | 103032465 | - | UBR5 | chr8 | 103317523 | - |
5UTR-3CDS | ENST00000311028 | ENST00000220959 | NCALD | chr8 | 103032465 | - | UBR5 | chr8 | 103317523 | - |
5UTR-intron | ENST00000311028 | ENST00000518205 | NCALD | chr8 | 103032465 | - | UBR5 | chr8 | 103317523 | - |
5UTR-intron | ENST00000311028 | ENST00000521922 | NCALD | chr8 | 103032465 | - | UBR5 | chr8 | 103317523 | - |
5UTR-intron | ENST00000311028 | ENST00000519528 | NCALD | chr8 | 103032465 | - | UBR5 | chr8 | 103317523 | - |
5UTR-3CDS | ENST00000395923 | ENST00000520539 | NCALD | chr8 | 103032465 | - | UBR5 | chr8 | 103317523 | - |
5UTR-3CDS | ENST00000395923 | ENST00000220959 | NCALD | chr8 | 103032465 | - | UBR5 | chr8 | 103317523 | - |
5UTR-intron | ENST00000395923 | ENST00000518205 | NCALD | chr8 | 103032465 | - | UBR5 | chr8 | 103317523 | - |
5UTR-intron | ENST00000395923 | ENST00000521922 | NCALD | chr8 | 103032465 | - | UBR5 | chr8 | 103317523 | - |
5UTR-intron | ENST00000395923 | ENST00000519528 | NCALD | chr8 | 103032465 | - | UBR5 | chr8 | 103317523 | - |
intron-3CDS | ENST00000220931 | ENST00000520539 | NCALD | chr8 | 103032465 | - | UBR5 | chr8 | 103317523 | - |
intron-3CDS | ENST00000220931 | ENST00000220959 | NCALD | chr8 | 103032465 | - | UBR5 | chr8 | 103317523 | - |
intron-intron | ENST00000220931 | ENST00000518205 | NCALD | chr8 | 103032465 | - | UBR5 | chr8 | 103317523 | - |
intron-intron | ENST00000220931 | ENST00000521922 | NCALD | chr8 | 103032465 | - | UBR5 | chr8 | 103317523 | - |
intron-intron | ENST00000220931 | ENST00000519528 | NCALD | chr8 | 103032465 | - | UBR5 | chr8 | 103317523 | - |
5UTR-3CDS | ENST00000521599 | ENST00000520539 | NCALD | chr8 | 103032465 | - | UBR5 | chr8 | 103317523 | - |
5UTR-3CDS | ENST00000521599 | ENST00000220959 | NCALD | chr8 | 103032465 | - | UBR5 | chr8 | 103317523 | - |
5UTR-intron | ENST00000521599 | ENST00000518205 | NCALD | chr8 | 103032465 | - | UBR5 | chr8 | 103317523 | - |
5UTR-intron | ENST00000521599 | ENST00000521922 | NCALD | chr8 | 103032465 | - | UBR5 | chr8 | 103317523 | - |
5UTR-intron | ENST00000521599 | ENST00000519528 | NCALD | chr8 | 103032465 | - | UBR5 | chr8 | 103317523 | - |
intron-3CDS | ENST00000522951 | ENST00000520539 | NCALD | chr8 | 103032465 | - | UBR5 | chr8 | 103317523 | - |
intron-3CDS | ENST00000522951 | ENST00000220959 | NCALD | chr8 | 103032465 | - | UBR5 | chr8 | 103317523 | - |
intron-intron | ENST00000522951 | ENST00000518205 | NCALD | chr8 | 103032465 | - | UBR5 | chr8 | 103317523 | - |
intron-intron | ENST00000522951 | ENST00000521922 | NCALD | chr8 | 103032465 | - | UBR5 | chr8 | 103317523 | - |
intron-intron | ENST00000522951 | ENST00000519528 | NCALD | chr8 | 103032465 | - | UBR5 | chr8 | 103317523 | - |
intron-3CDS | ENST00000519508 | ENST00000520539 | NCALD | chr8 | 103032465 | - | UBR5 | chr8 | 103317523 | - |
intron-3CDS | ENST00000519508 | ENST00000220959 | NCALD | chr8 | 103032465 | - | UBR5 | chr8 | 103317523 | - |
intron-intron | ENST00000519508 | ENST00000518205 | NCALD | chr8 | 103032465 | - | UBR5 | chr8 | 103317523 | - |
intron-intron | ENST00000519508 | ENST00000521922 | NCALD | chr8 | 103032465 | - | UBR5 | chr8 | 103317523 | - |
intron-intron | ENST00000519508 | ENST00000519528 | NCALD | chr8 | 103032465 | - | UBR5 | chr8 | 103317523 | - |
intron-3CDS | ENST00000521371 | ENST00000520539 | NCALD | chr8 | 103032465 | - | UBR5 | chr8 | 103317523 | - |
intron-3CDS | ENST00000521371 | ENST00000220959 | NCALD | chr8 | 103032465 | - | UBR5 | chr8 | 103317523 | - |
intron-intron | ENST00000521371 | ENST00000518205 | NCALD | chr8 | 103032465 | - | UBR5 | chr8 | 103317523 | - |
intron-intron | ENST00000521371 | ENST00000521922 | NCALD | chr8 | 103032465 | - | UBR5 | chr8 | 103317523 | - |
intron-intron | ENST00000521371 | ENST00000519528 | NCALD | chr8 | 103032465 | - | UBR5 | chr8 | 103317523 | - |
5UTR-3CDS | ENST00000311028 | ENST00000520539 | NCALD | chr8 | 103032465 | - | UBR5 | chr8 | 103373854 | - |
5UTR-3CDS | ENST00000311028 | ENST00000220959 | NCALD | chr8 | 103032465 | - | UBR5 | chr8 | 103373854 | - |
5UTR-intron | ENST00000311028 | ENST00000518205 | NCALD | chr8 | 103032465 | - | UBR5 | chr8 | 103373854 | - |
5UTR-intron | ENST00000311028 | ENST00000521922 | NCALD | chr8 | 103032465 | - | UBR5 | chr8 | 103373854 | - |
5UTR-intron | ENST00000311028 | ENST00000519528 | NCALD | chr8 | 103032465 | - | UBR5 | chr8 | 103373854 | - |
5UTR-3CDS | ENST00000395923 | ENST00000520539 | NCALD | chr8 | 103032465 | - | UBR5 | chr8 | 103373854 | - |
5UTR-3CDS | ENST00000395923 | ENST00000220959 | NCALD | chr8 | 103032465 | - | UBR5 | chr8 | 103373854 | - |
5UTR-intron | ENST00000395923 | ENST00000518205 | NCALD | chr8 | 103032465 | - | UBR5 | chr8 | 103373854 | - |
5UTR-intron | ENST00000395923 | ENST00000521922 | NCALD | chr8 | 103032465 | - | UBR5 | chr8 | 103373854 | - |
5UTR-intron | ENST00000395923 | ENST00000519528 | NCALD | chr8 | 103032465 | - | UBR5 | chr8 | 103373854 | - |
intron-3CDS | ENST00000220931 | ENST00000520539 | NCALD | chr8 | 103032465 | - | UBR5 | chr8 | 103373854 | - |
intron-3CDS | ENST00000220931 | ENST00000220959 | NCALD | chr8 | 103032465 | - | UBR5 | chr8 | 103373854 | - |
intron-intron | ENST00000220931 | ENST00000518205 | NCALD | chr8 | 103032465 | - | UBR5 | chr8 | 103373854 | - |
intron-intron | ENST00000220931 | ENST00000521922 | NCALD | chr8 | 103032465 | - | UBR5 | chr8 | 103373854 | - |
intron-intron | ENST00000220931 | ENST00000519528 | NCALD | chr8 | 103032465 | - | UBR5 | chr8 | 103373854 | - |
5UTR-3CDS | ENST00000521599 | ENST00000520539 | NCALD | chr8 | 103032465 | - | UBR5 | chr8 | 103373854 | - |
5UTR-3CDS | ENST00000521599 | ENST00000220959 | NCALD | chr8 | 103032465 | - | UBR5 | chr8 | 103373854 | - |
5UTR-intron | ENST00000521599 | ENST00000518205 | NCALD | chr8 | 103032465 | - | UBR5 | chr8 | 103373854 | - |
5UTR-intron | ENST00000521599 | ENST00000521922 | NCALD | chr8 | 103032465 | - | UBR5 | chr8 | 103373854 | - |
5UTR-intron | ENST00000521599 | ENST00000519528 | NCALD | chr8 | 103032465 | - | UBR5 | chr8 | 103373854 | - |
intron-3CDS | ENST00000522951 | ENST00000520539 | NCALD | chr8 | 103032465 | - | UBR5 | chr8 | 103373854 | - |
intron-3CDS | ENST00000522951 | ENST00000220959 | NCALD | chr8 | 103032465 | - | UBR5 | chr8 | 103373854 | - |
intron-intron | ENST00000522951 | ENST00000518205 | NCALD | chr8 | 103032465 | - | UBR5 | chr8 | 103373854 | - |
intron-intron | ENST00000522951 | ENST00000521922 | NCALD | chr8 | 103032465 | - | UBR5 | chr8 | 103373854 | - |
intron-intron | ENST00000522951 | ENST00000519528 | NCALD | chr8 | 103032465 | - | UBR5 | chr8 | 103373854 | - |
intron-3CDS | ENST00000519508 | ENST00000520539 | NCALD | chr8 | 103032465 | - | UBR5 | chr8 | 103373854 | - |
intron-3CDS | ENST00000519508 | ENST00000220959 | NCALD | chr8 | 103032465 | - | UBR5 | chr8 | 103373854 | - |
intron-intron | ENST00000519508 | ENST00000518205 | NCALD | chr8 | 103032465 | - | UBR5 | chr8 | 103373854 | - |
intron-intron | ENST00000519508 | ENST00000521922 | NCALD | chr8 | 103032465 | - | UBR5 | chr8 | 103373854 | - |
intron-intron | ENST00000519508 | ENST00000519528 | NCALD | chr8 | 103032465 | - | UBR5 | chr8 | 103373854 | - |
intron-3CDS | ENST00000521371 | ENST00000520539 | NCALD | chr8 | 103032465 | - | UBR5 | chr8 | 103373854 | - |
intron-3CDS | ENST00000521371 | ENST00000220959 | NCALD | chr8 | 103032465 | - | UBR5 | chr8 | 103373854 | - |
intron-intron | ENST00000521371 | ENST00000518205 | NCALD | chr8 | 103032465 | - | UBR5 | chr8 | 103373854 | - |
intron-intron | ENST00000521371 | ENST00000521922 | NCALD | chr8 | 103032465 | - | UBR5 | chr8 | 103373854 | - |
intron-intron | ENST00000521371 | ENST00000519528 | NCALD | chr8 | 103032465 | - | UBR5 | chr8 | 103373854 | - |
Frame-shift | ENST00000311028 | ENST00000520539 | NCALD | chr8 | 102731480 | - | UBR5 | chr8 | 103266742 | - |
Frame-shift | ENST00000311028 | ENST00000220959 | NCALD | chr8 | 102731480 | - | UBR5 | chr8 | 103266742 | - |
Frame-shift | ENST00000311028 | ENST00000518205 | NCALD | chr8 | 102731480 | - | UBR5 | chr8 | 103266742 | - |
In-frame | ENST00000311028 | ENST00000521922 | NCALD | chr8 | 102731480 | - | UBR5 | chr8 | 103266742 | - |
5CDS-intron | ENST00000311028 | ENST00000519528 | NCALD | chr8 | 102731480 | - | UBR5 | chr8 | 103266742 | - |
Frame-shift | ENST00000395923 | ENST00000520539 | NCALD | chr8 | 102731480 | - | UBR5 | chr8 | 103266742 | - |
Frame-shift | ENST00000395923 | ENST00000220959 | NCALD | chr8 | 102731480 | - | UBR5 | chr8 | 103266742 | - |
Frame-shift | ENST00000395923 | ENST00000518205 | NCALD | chr8 | 102731480 | - | UBR5 | chr8 | 103266742 | - |
In-frame | ENST00000395923 | ENST00000521922 | NCALD | chr8 | 102731480 | - | UBR5 | chr8 | 103266742 | - |
5CDS-intron | ENST00000395923 | ENST00000519528 | NCALD | chr8 | 102731480 | - | UBR5 | chr8 | 103266742 | - |
In-frame | ENST00000220931 | ENST00000520539 | NCALD | chr8 | 102731480 | - | UBR5 | chr8 | 103266742 | - |
Frame-shift | ENST00000220931 | ENST00000220959 | NCALD | chr8 | 102731480 | - | UBR5 | chr8 | 103266742 | - |
Frame-shift | ENST00000220931 | ENST00000518205 | NCALD | chr8 | 102731480 | - | UBR5 | chr8 | 103266742 | - |
Frame-shift | ENST00000220931 | ENST00000521922 | NCALD | chr8 | 102731480 | - | UBR5 | chr8 | 103266742 | - |
5CDS-intron | ENST00000220931 | ENST00000519528 | NCALD | chr8 | 102731480 | - | UBR5 | chr8 | 103266742 | - |
Frame-shift | ENST00000521599 | ENST00000520539 | NCALD | chr8 | 102731480 | - | UBR5 | chr8 | 103266742 | - |
Frame-shift | ENST00000521599 | ENST00000220959 | NCALD | chr8 | 102731480 | - | UBR5 | chr8 | 103266742 | - |
Frame-shift | ENST00000521599 | ENST00000518205 | NCALD | chr8 | 102731480 | - | UBR5 | chr8 | 103266742 | - |
In-frame | ENST00000521599 | ENST00000521922 | NCALD | chr8 | 102731480 | - | UBR5 | chr8 | 103266742 | - |
5CDS-intron | ENST00000521599 | ENST00000519528 | NCALD | chr8 | 102731480 | - | UBR5 | chr8 | 103266742 | - |
In-frame | ENST00000522951 | ENST00000520539 | NCALD | chr8 | 102731480 | - | UBR5 | chr8 | 103266742 | - |
Frame-shift | ENST00000522951 | ENST00000220959 | NCALD | chr8 | 102731480 | - | UBR5 | chr8 | 103266742 | - |
Frame-shift | ENST00000522951 | ENST00000518205 | NCALD | chr8 | 102731480 | - | UBR5 | chr8 | 103266742 | - |
Frame-shift | ENST00000522951 | ENST00000521922 | NCALD | chr8 | 102731480 | - | UBR5 | chr8 | 103266742 | - |
5CDS-intron | ENST00000522951 | ENST00000519528 | NCALD | chr8 | 102731480 | - | UBR5 | chr8 | 103266742 | - |
Frame-shift | ENST00000519508 | ENST00000520539 | NCALD | chr8 | 102731480 | - | UBR5 | chr8 | 103266742 | - |
In-frame | ENST00000519508 | ENST00000220959 | NCALD | chr8 | 102731480 | - | UBR5 | chr8 | 103266742 | - |
In-frame | ENST00000519508 | ENST00000518205 | NCALD | chr8 | 102731480 | - | UBR5 | chr8 | 103266742 | - |
Frame-shift | ENST00000519508 | ENST00000521922 | NCALD | chr8 | 102731480 | - | UBR5 | chr8 | 103266742 | - |
5CDS-intron | ENST00000519508 | ENST00000519528 | NCALD | chr8 | 102731480 | - | UBR5 | chr8 | 103266742 | - |
intron-3CDS | ENST00000521371 | ENST00000520539 | NCALD | chr8 | 102731480 | - | UBR5 | chr8 | 103266742 | - |
intron-3CDS | ENST00000521371 | ENST00000220959 | NCALD | chr8 | 102731480 | - | UBR5 | chr8 | 103266742 | - |
intron-3CDS | ENST00000521371 | ENST00000518205 | NCALD | chr8 | 102731480 | - | UBR5 | chr8 | 103266742 | - |
intron-3CDS | ENST00000521371 | ENST00000521922 | NCALD | chr8 | 102731480 | - | UBR5 | chr8 | 103266742 | - |
intron-intron | ENST00000521371 | ENST00000519528 | NCALD | chr8 | 102731480 | - | UBR5 | chr8 | 103266742 | - |
5UTR-3CDS | ENST00000311028 | ENST00000520539 | NCALD | chr8 | 103136465 | - | UBR5 | chr8 | 103279235 | - |
5UTR-3CDS | ENST00000311028 | ENST00000220959 | NCALD | chr8 | 103136465 | - | UBR5 | chr8 | 103279235 | - |
5UTR-3CDS | ENST00000311028 | ENST00000518205 | NCALD | chr8 | 103136465 | - | UBR5 | chr8 | 103279235 | - |
5UTR-3CDS | ENST00000311028 | ENST00000521922 | NCALD | chr8 | 103136465 | - | UBR5 | chr8 | 103279235 | - |
5UTR-intron | ENST00000311028 | ENST00000519528 | NCALD | chr8 | 103136465 | - | UBR5 | chr8 | 103279235 | - |
intron-3CDS | ENST00000395923 | ENST00000520539 | NCALD | chr8 | 103136465 | - | UBR5 | chr8 | 103279235 | - |
intron-3CDS | ENST00000395923 | ENST00000220959 | NCALD | chr8 | 103136465 | - | UBR5 | chr8 | 103279235 | - |
intron-3CDS | ENST00000395923 | ENST00000518205 | NCALD | chr8 | 103136465 | - | UBR5 | chr8 | 103279235 | - |
intron-3CDS | ENST00000395923 | ENST00000521922 | NCALD | chr8 | 103136465 | - | UBR5 | chr8 | 103279235 | - |
intron-intron | ENST00000395923 | ENST00000519528 | NCALD | chr8 | 103136465 | - | UBR5 | chr8 | 103279235 | - |
intron-3CDS | ENST00000220931 | ENST00000520539 | NCALD | chr8 | 103136465 | - | UBR5 | chr8 | 103279235 | - |
intron-3CDS | ENST00000220931 | ENST00000220959 | NCALD | chr8 | 103136465 | - | UBR5 | chr8 | 103279235 | - |
intron-3CDS | ENST00000220931 | ENST00000518205 | NCALD | chr8 | 103136465 | - | UBR5 | chr8 | 103279235 | - |
intron-3CDS | ENST00000220931 | ENST00000521922 | NCALD | chr8 | 103136465 | - | UBR5 | chr8 | 103279235 | - |
intron-intron | ENST00000220931 | ENST00000519528 | NCALD | chr8 | 103136465 | - | UBR5 | chr8 | 103279235 | - |
5UTR-3CDS | ENST00000521599 | ENST00000520539 | NCALD | chr8 | 103136465 | - | UBR5 | chr8 | 103279235 | - |
5UTR-3CDS | ENST00000521599 | ENST00000220959 | NCALD | chr8 | 103136465 | - | UBR5 | chr8 | 103279235 | - |
5UTR-3CDS | ENST00000521599 | ENST00000518205 | NCALD | chr8 | 103136465 | - | UBR5 | chr8 | 103279235 | - |
5UTR-3CDS | ENST00000521599 | ENST00000521922 | NCALD | chr8 | 103136465 | - | UBR5 | chr8 | 103279235 | - |
5UTR-intron | ENST00000521599 | ENST00000519528 | NCALD | chr8 | 103136465 | - | UBR5 | chr8 | 103279235 | - |
intron-3CDS | ENST00000522951 | ENST00000520539 | NCALD | chr8 | 103136465 | - | UBR5 | chr8 | 103279235 | - |
intron-3CDS | ENST00000522951 | ENST00000220959 | NCALD | chr8 | 103136465 | - | UBR5 | chr8 | 103279235 | - |
intron-3CDS | ENST00000522951 | ENST00000518205 | NCALD | chr8 | 103136465 | - | UBR5 | chr8 | 103279235 | - |
intron-3CDS | ENST00000522951 | ENST00000521922 | NCALD | chr8 | 103136465 | - | UBR5 | chr8 | 103279235 | - |
intron-intron | ENST00000522951 | ENST00000519528 | NCALD | chr8 | 103136465 | - | UBR5 | chr8 | 103279235 | - |
intron-3CDS | ENST00000519508 | ENST00000520539 | NCALD | chr8 | 103136465 | - | UBR5 | chr8 | 103279235 | - |
intron-3CDS | ENST00000519508 | ENST00000220959 | NCALD | chr8 | 103136465 | - | UBR5 | chr8 | 103279235 | - |
intron-3CDS | ENST00000519508 | ENST00000518205 | NCALD | chr8 | 103136465 | - | UBR5 | chr8 | 103279235 | - |
intron-3CDS | ENST00000519508 | ENST00000521922 | NCALD | chr8 | 103136465 | - | UBR5 | chr8 | 103279235 | - |
intron-intron | ENST00000519508 | ENST00000519528 | NCALD | chr8 | 103136465 | - | UBR5 | chr8 | 103279235 | - |
intron-3CDS | ENST00000521371 | ENST00000520539 | NCALD | chr8 | 103136465 | - | UBR5 | chr8 | 103279235 | - |
intron-3CDS | ENST00000521371 | ENST00000220959 | NCALD | chr8 | 103136465 | - | UBR5 | chr8 | 103279235 | - |
intron-3CDS | ENST00000521371 | ENST00000518205 | NCALD | chr8 | 103136465 | - | UBR5 | chr8 | 103279235 | - |
intron-3CDS | ENST00000521371 | ENST00000521922 | NCALD | chr8 | 103136465 | - | UBR5 | chr8 | 103279235 | - |
intron-intron | ENST00000521371 | ENST00000519528 | NCALD | chr8 | 103136465 | - | UBR5 | chr8 | 103279235 | - |
ORFfinder result based on the fusion transcript sequence of in-frame fusion genes. |
Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | Seq length (transcript) | BP loci (transcript) | Predicted start (transcript) | Predicted stop (transcript) | Seq length (amino acids) |
ENST00000311028 | NCALD | chr8 | 102731480 | - | ENST00000521922 | UBR5 | chr8 | 103266742 | - | 1074 | 757 | 379 | 969 | 196 |
ENST00000395923 | NCALD | chr8 | 102731480 | - | ENST00000521922 | UBR5 | chr8 | 103266742 | - | 1155 | 838 | 460 | 1050 | 196 |
ENST00000220931 | NCALD | chr8 | 102731480 | - | ENST00000520539 | UBR5 | chr8 | 103266742 | - | 2000 | 497 | 119 | 709 | 196 |
ENST00000521599 | NCALD | chr8 | 102731480 | - | ENST00000521922 | UBR5 | chr8 | 103266742 | - | 988 | 671 | 293 | 883 | 196 |
ENST00000522951 | NCALD | chr8 | 102731480 | - | ENST00000520539 | UBR5 | chr8 | 103266742 | - | 2016 | 513 | 135 | 725 | 196 |
ENST00000519508 | NCALD | chr8 | 102731480 | - | ENST00000220959 | UBR5 | chr8 | 103266742 | - | 1176 | 397 | 19 | 609 | 196 |
ENST00000519508 | NCALD | chr8 | 102731480 | - | ENST00000518205 | UBR5 | chr8 | 103266742 | - | 714 | 397 | 19 | 609 | 196 |
DeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated. |
Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | No-coding score | Coding score |
ENST00000311028 | ENST00000521922 | NCALD | chr8 | 102731480 | - | UBR5 | chr8 | 103266742 | - | 0.002468111 | 0.9975319 |
ENST00000395923 | ENST00000521922 | NCALD | chr8 | 102731480 | - | UBR5 | chr8 | 103266742 | - | 0.006162742 | 0.9938373 |
ENST00000220931 | ENST00000520539 | NCALD | chr8 | 102731480 | - | UBR5 | chr8 | 103266742 | - | 0.001842886 | 0.9981571 |
ENST00000521599 | ENST00000521922 | NCALD | chr8 | 102731480 | - | UBR5 | chr8 | 103266742 | - | 0.002240663 | 0.99775934 |
ENST00000522951 | ENST00000520539 | NCALD | chr8 | 102731480 | - | UBR5 | chr8 | 103266742 | - | 0.001740563 | 0.9982595 |
ENST00000519508 | ENST00000220959 | NCALD | chr8 | 102731480 | - | UBR5 | chr8 | 103266742 | - | 0.001989709 | 0.99801034 |
ENST00000519508 | ENST00000518205 | NCALD | chr8 | 102731480 | - | UBR5 | chr8 | 103266742 | - | 0.002593223 | 0.9974068 |
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Fusion Genomic Features for NCALD-UBR5 |
FusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints. |
Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | 1-p | p (fusion gene breakpoint) |
Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page. |
Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page. |
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Fusion Protein Features for NCALD-UBR5 |
Go to FGviewer for the breakpoints of chr8:102731480-chr8:103266742 - FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels. |
Main function of each fusion partner protein. (from UniProt) |
Hgene | Tgene |
. | . |
FUNCTION: Might normally function as a transcriptional repressor. EWS-fusion-proteins (EFPS) may play a role in the tumorigenic process. They may disturb gene expression by mimicking, or interfering with the normal function of CTD-POLII within the transcription initiation complex. They may also contribute to an aberrant activation of the fusion protein target genes. | FUNCTION: Might normally function as a transcriptional repressor. EWS-fusion-proteins (EFPS) may play a role in the tumorigenic process. They may disturb gene expression by mimicking, or interfering with the normal function of CTD-POLII within the transcription initiation complex. They may also contribute to an aberrant activation of the fusion protein target genes. |
Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | NCALD | chr8:102731480 | chr8:103266742 | ENST00000220931 | - | 2 | 4 | 109_120 | 126.0 | 194.0 | Calcium binding | 2 |
Hgene | NCALD | chr8:102731480 | chr8:103266742 | ENST00000220931 | - | 2 | 4 | 73_84 | 126.0 | 194.0 | Calcium binding | 1 |
Hgene | NCALD | chr8:102731480 | chr8:103266742 | ENST00000311028 | - | 5 | 7 | 109_120 | 126.0 | 194.0 | Calcium binding | 2 |
Hgene | NCALD | chr8:102731480 | chr8:103266742 | ENST00000311028 | - | 5 | 7 | 73_84 | 126.0 | 194.0 | Calcium binding | 1 |
Hgene | NCALD | chr8:102731480 | chr8:103266742 | ENST00000395923 | - | 4 | 6 | 109_120 | 126.0 | 194.0 | Calcium binding | 2 |
Hgene | NCALD | chr8:102731480 | chr8:103266742 | ENST00000395923 | - | 4 | 6 | 73_84 | 126.0 | 194.0 | Calcium binding | 1 |
Hgene | NCALD | chr8:102731480 | chr8:103266742 | ENST00000519508 | - | 1 | 3 | 109_120 | 126.0 | 194.0 | Calcium binding | 2 |
Hgene | NCALD | chr8:102731480 | chr8:103266742 | ENST00000519508 | - | 1 | 3 | 73_84 | 126.0 | 194.0 | Calcium binding | 1 |
Hgene | NCALD | chr8:102731480 | chr8:103266742 | ENST00000521599 | - | 5 | 7 | 109_120 | 126.0 | 194.0 | Calcium binding | 2 |
Hgene | NCALD | chr8:102731480 | chr8:103266742 | ENST00000521599 | - | 5 | 7 | 73_84 | 126.0 | 194.0 | Calcium binding | 1 |
Hgene | NCALD | chr8:102731480 | chr8:103266742 | ENST00000220931 | - | 2 | 4 | 23_58 | 126.0 | 194.0 | Domain | EF-hand 1 |
Hgene | NCALD | chr8:102731480 | chr8:103266742 | ENST00000220931 | - | 2 | 4 | 60_95 | 126.0 | 194.0 | Domain | EF-hand 2 |
Hgene | NCALD | chr8:102731480 | chr8:103266742 | ENST00000311028 | - | 5 | 7 | 23_58 | 126.0 | 194.0 | Domain | EF-hand 1 |
Hgene | NCALD | chr8:102731480 | chr8:103266742 | ENST00000311028 | - | 5 | 7 | 60_95 | 126.0 | 194.0 | Domain | EF-hand 2 |
Hgene | NCALD | chr8:102731480 | chr8:103266742 | ENST00000395923 | - | 4 | 6 | 23_58 | 126.0 | 194.0 | Domain | EF-hand 1 |
Hgene | NCALD | chr8:102731480 | chr8:103266742 | ENST00000395923 | - | 4 | 6 | 60_95 | 126.0 | 194.0 | Domain | EF-hand 2 |
Hgene | NCALD | chr8:102731480 | chr8:103266742 | ENST00000519508 | - | 1 | 3 | 23_58 | 126.0 | 194.0 | Domain | EF-hand 1 |
Hgene | NCALD | chr8:102731480 | chr8:103266742 | ENST00000519508 | - | 1 | 3 | 60_95 | 126.0 | 194.0 | Domain | EF-hand 2 |
Hgene | NCALD | chr8:102731480 | chr8:103266742 | ENST00000521599 | - | 5 | 7 | 23_58 | 126.0 | 194.0 | Domain | EF-hand 1 |
Hgene | NCALD | chr8:102731480 | chr8:103266742 | ENST00000521599 | - | 5 | 7 | 60_95 | 126.0 | 194.0 | Domain | EF-hand 2 |
Tgene | UBR5 | chr8:102731480 | chr8:103266742 | ENST00000520539 | 57 | 59 | 2737_2757 | 2729.0 | 2800.0 | Compositional bias | Note=Pro-rich |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | NCALD | chr8:102731480 | chr8:103266742 | ENST00000220931 | - | 2 | 4 | 157_168 | 126.0 | 194.0 | Calcium binding | 3 |
Hgene | NCALD | chr8:102731480 | chr8:103266742 | ENST00000311028 | - | 5 | 7 | 157_168 | 126.0 | 194.0 | Calcium binding | 3 |
Hgene | NCALD | chr8:102731480 | chr8:103266742 | ENST00000395923 | - | 4 | 6 | 157_168 | 126.0 | 194.0 | Calcium binding | 3 |
Hgene | NCALD | chr8:102731480 | chr8:103266742 | ENST00000519508 | - | 1 | 3 | 157_168 | 126.0 | 194.0 | Calcium binding | 3 |
Hgene | NCALD | chr8:102731480 | chr8:103266742 | ENST00000521599 | - | 5 | 7 | 157_168 | 126.0 | 194.0 | Calcium binding | 3 |
Hgene | NCALD | chr8:102731480 | chr8:103266742 | ENST00000220931 | - | 2 | 4 | 144_179 | 126.0 | 194.0 | Domain | EF-hand 4 |
Hgene | NCALD | chr8:102731480 | chr8:103266742 | ENST00000220931 | - | 2 | 4 | 96_131 | 126.0 | 194.0 | Domain | EF-hand 3 |
Hgene | NCALD | chr8:102731480 | chr8:103266742 | ENST00000311028 | - | 5 | 7 | 144_179 | 126.0 | 194.0 | Domain | EF-hand 4 |
Hgene | NCALD | chr8:102731480 | chr8:103266742 | ENST00000311028 | - | 5 | 7 | 96_131 | 126.0 | 194.0 | Domain | EF-hand 3 |
Hgene | NCALD | chr8:102731480 | chr8:103266742 | ENST00000395923 | - | 4 | 6 | 144_179 | 126.0 | 194.0 | Domain | EF-hand 4 |
Hgene | NCALD | chr8:102731480 | chr8:103266742 | ENST00000395923 | - | 4 | 6 | 96_131 | 126.0 | 194.0 | Domain | EF-hand 3 |
Hgene | NCALD | chr8:102731480 | chr8:103266742 | ENST00000519508 | - | 1 | 3 | 144_179 | 126.0 | 194.0 | Domain | EF-hand 4 |
Hgene | NCALD | chr8:102731480 | chr8:103266742 | ENST00000519508 | - | 1 | 3 | 96_131 | 126.0 | 194.0 | Domain | EF-hand 3 |
Hgene | NCALD | chr8:102731480 | chr8:103266742 | ENST00000521599 | - | 5 | 7 | 144_179 | 126.0 | 194.0 | Domain | EF-hand 4 |
Hgene | NCALD | chr8:102731480 | chr8:103266742 | ENST00000521599 | - | 5 | 7 | 96_131 | 126.0 | 194.0 | Domain | EF-hand 3 |
Tgene | UBR5 | chr8:102731480 | chr8:103266742 | ENST00000520539 | 57 | 59 | 1528_1537 | 2729.0 | 2800.0 | Compositional bias | Note=Poly-Ser | |
Tgene | UBR5 | chr8:102731480 | chr8:103266742 | ENST00000520539 | 57 | 59 | 1671_1681 | 2729.0 | 2800.0 | Compositional bias | Note=Poly-Ser | |
Tgene | UBR5 | chr8:102731480 | chr8:103266742 | ENST00000520539 | 57 | 59 | 1762_1768 | 2729.0 | 2800.0 | Compositional bias | Note=Poly-Ala | |
Tgene | UBR5 | chr8:102731480 | chr8:103266742 | ENST00000520539 | 57 | 59 | 1986_1997 | 2729.0 | 2800.0 | Compositional bias | Note=Asp/Glu-rich (acidic) | |
Tgene | UBR5 | chr8:102731480 | chr8:103266742 | ENST00000520539 | 57 | 59 | 2036_2059 | 2729.0 | 2800.0 | Compositional bias | Note=Pro-rich | |
Tgene | UBR5 | chr8:102731480 | chr8:103266742 | ENST00000520539 | 57 | 59 | 2329_2348 | 2729.0 | 2800.0 | Compositional bias | Note=Arg/Glu-rich (mixed charge) | |
Tgene | UBR5 | chr8:102731480 | chr8:103266742 | ENST00000520539 | 57 | 59 | 2357_2366 | 2729.0 | 2800.0 | Compositional bias | Note=Arg/Asp-rich (mixed charge) | |
Tgene | UBR5 | chr8:102731480 | chr8:103266742 | ENST00000520539 | 57 | 59 | 2489_2500 | 2729.0 | 2800.0 | Compositional bias | Note=Asp/Glu-rich (acidic) | |
Tgene | UBR5 | chr8:102731480 | chr8:103266742 | ENST00000520539 | 57 | 59 | 940_945 | 2729.0 | 2800.0 | Compositional bias | Note=Poly-Glu | |
Tgene | UBR5 | chr8:102731480 | chr8:103266742 | ENST00000520539 | 57 | 59 | 980_985 | 2729.0 | 2800.0 | Compositional bias | Note=Poly-Ser | |
Tgene | UBR5 | chr8:102731480 | chr8:103266742 | ENST00000520539 | 57 | 59 | 2377_2454 | 2729.0 | 2800.0 | Domain | PABC | |
Tgene | UBR5 | chr8:102731480 | chr8:103266742 | ENST00000520539 | 57 | 59 | 2462_2799 | 2729.0 | 2800.0 | Domain | HECT | |
Tgene | UBR5 | chr8:102731480 | chr8:103266742 | ENST00000520539 | 57 | 59 | 1177_1245 | 2729.0 | 2800.0 | Zinc finger | UBR-type |
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Fusion Gene Sequence for NCALD-UBR5 |
For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones. |
>In-frame_ENST00000311028_ENST00000521922_TCGA-PG-A914-01A_NCALD_chr8_102731480_-_UBR5_chr8_103266742_length(transcript)=1074nt_BP=757nt GACGGTGCTGTCCAGGGGGAGGCGGGCGGAGGGAAGGCGCTGCCGCTGCTGCCGCCGCCTCGCCCGAAGCGACACAGACGCTGGGAGCGG CCGAGGCGAGATGTATTTAGACTTTTTAATTATTCTTCCTAGTTCCTGATAAGCTAAGACAATACTTTTATTTTTGACAGAGTGATTTCT TCTGACTTGAGCCTGCAGTGTGCTGTGAGAGATCTACCACTAGATTATCTCAACTTTGGTCTCCTGGGACCACTCGTTGCTGACAGTCAG AAATTGCAAGGCATCTGATCTCCTGGTGTTAAAATCTGTCGTGATACCGAGGAAGGCCCCGAGATCCCAGGCACTGAGTGACTGCATACT CTGAATTCTTGCCGCCAGGATGGGGAAACAGAACAGCAAGCTGCGCCCGGAGGTCATGCAGGACTTGCTGGAAAGCACAGACTTTACAGA GCATGAGATCCAGGAATGGTATAAAGGCTTCTTGAGAGACTGCCCCAGTGGACATTTGTCAATGGAAGAGTTTAAGAAAATATATGGGAA CTTTTTCCCTTATGGGGATGCTTCCAAATTTGCAGAGCATGTCTTCCGCACCTTCGATGCAAATGGAGATGGGACAATAGACTTTAGAGA ATTCATCATCGCCTTGAGTGTAACTTCGAGGGGGAAGCTGGAGCAGAAGCTGAAATGGGCCTTCAGCATGTACGACCTGGACGGAAATGG CTATATCAGCAAGGCAGAGATGCTAGAGATCGTGCAGGTTTACTTTTGGACATCAAGCCCATCACTGCCAGCCAGTGAAGAAGGATTCCA GCCTATGCCCTCAATCACAATAAGACCACCAGATGACCAACATCTTCCTACTGCAAATACTTGCATTTCTCGACTTTACGTCCCACTCTA TTCCTCTAAACAGATTCTCAAACAGAAATTGTTACTCGCCATTAAGACCAAGAATTTTGGTTTTGTGTAGAGTATAAAAAGTGTGTATTG >In-frame_ENST00000311028_ENST00000521922_TCGA-PG-A914-01A_NCALD_chr8_102731480_-_UBR5_chr8_103266742_length(amino acids)=196AA_start in transcript=379_stop in transcript=969 MGKQNSKLRPEVMQDLLESTDFTEHEIQEWYKGFLRDCPSGHLSMEEFKKIYGNFFPYGDASKFAEHVFRTFDANGDGTIDFREFIIALS VTSRGKLEQKLKWAFSMYDLDGNGYISKAEMLEIVQVYFWTSSPSLPASEEGFQPMPSITIRPPDDQHLPTANTCISRLYVPLYSSKQIL -------------------------------------------------------------- >In-frame_ENST00000395923_ENST00000521922_TCGA-PG-A914-01A_NCALD_chr8_102731480_-_UBR5_chr8_103266742_length(transcript)=1155nt_BP=838nt AGGGGCCCCTTAGATGTCTTCCTCCGGATTTTTTGTTAAGCTTTTCCTAGACAGTTTACAGAAGGCTTTGGGTAGAGAAAGCACTAGTTA GACAAAAGCAGCCCCCCTCCCACCTTGTGGGCATGAAGAGTCCAGAGGACACCACCTGAGAAGCTTTTCAACTGCCTTCCAAGGCTCCCT TGAACTTCACTGCGGTAGAGCAGGGACCCCAGACCCCCCCTCAAATCGAAGCTTGGAAGGAGGTGCTCTAGGCTGAATCTGACCTCCCAG GACCCGAGGAGGCAAGCAGATGGCACCCCTTGGAAAGTAGCAGTGCAGGCTGGCTAGAGGCCTGGGCGAGTGATTTCTTCTGACTTGAGC CTGCAGTGTGCTGTGAGAGATCTACCACTAGATTATCTCAACTTTGGTCTCCTGGGACCACTCGTTGCTGACAGTCAGAAACTGAATTCT TGCCGCCAGGATGGGGAAACAGAACAGCAAGCTGCGCCCGGAGGTCATGCAGGACTTGCTGGAAAGCACAGACTTTACAGAGCATGAGAT CCAGGAATGGTATAAAGGCTTCTTGAGAGACTGCCCCAGTGGACATTTGTCAATGGAAGAGTTTAAGAAAATATATGGGAACTTTTTCCC TTATGGGGATGCTTCCAAATTTGCAGAGCATGTCTTCCGCACCTTCGATGCAAATGGAGATGGGACAATAGACTTTAGAGAATTCATCAT CGCCTTGAGTGTAACTTCGAGGGGGAAGCTGGAGCAGAAGCTGAAATGGGCCTTCAGCATGTACGACCTGGACGGAAATGGCTATATCAG CAAGGCAGAGATGCTAGAGATCGTGCAGGTTTACTTTTGGACATCAAGCCCATCACTGCCAGCCAGTGAAGAAGGATTCCAGCCTATGCC CTCAATCACAATAAGACCACCAGATGACCAACATCTTCCTACTGCAAATACTTGCATTTCTCGACTTTACGTCCCACTCTATTCCTCTAA ACAGATTCTCAAACAGAAATTGTTACTCGCCATTAAGACCAAGAATTTTGGTTTTGTGTAGAGTATAAAAAGTGTGTATTGCTGTGTAAT >In-frame_ENST00000395923_ENST00000521922_TCGA-PG-A914-01A_NCALD_chr8_102731480_-_UBR5_chr8_103266742_length(amino acids)=196AA_start in transcript=460_stop in transcript=1050 MGKQNSKLRPEVMQDLLESTDFTEHEIQEWYKGFLRDCPSGHLSMEEFKKIYGNFFPYGDASKFAEHVFRTFDANGDGTIDFREFIIALS VTSRGKLEQKLKWAFSMYDLDGNGYISKAEMLEIVQVYFWTSSPSLPASEEGFQPMPSITIRPPDDQHLPTANTCISRLYVPLYSSKQIL -------------------------------------------------------------- >In-frame_ENST00000220931_ENST00000520539_TCGA-PG-A914-01A_NCALD_chr8_102731480_-_UBR5_chr8_103266742_length(transcript)=2000nt_BP=497nt GTGAGAATCTGGTGGATGCTGGACCTTGCTGCTGCTGCTACTGCTGTTTCCAGGGGCTGCAGAGCATGGACTGTTAAATCTTGCACTTCT TCTGAGTGAGCTGAATTCTTGCCGCCAGGATGGGGAAACAGAACAGCAAGCTGCGCCCGGAGGTCATGCAGGACTTGCTGGAAAGCACAG ACTTTACAGAGCATGAGATCCAGGAATGGTATAAAGGCTTCTTGAGAGACTGCCCCAGTGGACATTTGTCAATGGAAGAGTTTAAGAAAA TATATGGGAACTTTTTCCCTTATGGGGATGCTTCCAAATTTGCAGAGCATGTCTTCCGCACCTTCGATGCAAATGGAGATGGGACAATAG ACTTTAGAGAATTCATCATCGCCTTGAGTGTAACTTCGAGGGGGAAGCTGGAGCAGAAGCTGAAATGGGCCTTCAGCATGTACGACCTGG ACGGAAATGGCTATATCAGCAAGGCAGAGATGCTAGAGATCGTGCAGGTTTACTTTTGGACATCAAGCCCATCACTGCCAGCCAGTGAAG AAGGATTCCAGCCTATGCCCTCAATCACAATAAGACCACCAGATGACCAACATCTTCCTACTGCAAATACTTGCATTTCTCGACTTTACG TCCCACTCTATTCCTCTAAACAGATTCTCAAACAGAAATTGTTACTCGCCATTAAGACCAAGAATTTTGGTTTTGTGTAGAGTATAAAAA GTGTGTATTGCTGTGTAATATTACTAGCAAATTTTGTAGATTTTTTTCCATTTGTCTATAAAAGTTTATGGAAGTTAATGCTGTCATACC CCCCTGGTGGTACCTTAAAGAGATAAAATGCAGACATTCCTTGCTGAGTTTATAGCTTAAAGGCCTAAGGAGCACTAGCAACATTTGGCT ATATTGGTTTGCTAGTCACCAACTTCTGGGTCTAACCCCAGCCAAAGATGACAGCAGAACAACATAATTTACACTGTGATTTATCTTTTT GCTGAGGGGGAAAAAATGTAAATGTTCTGAAAATTCACTGCTGCCTTTGTGGAAACTGTTTCAGCAAAGGTTCTTGTATAGAGGGAATAG GGAATTTCAAAATAAAAAATTAAGTATGTTCTGTGTTTTCATTTTAACTTTTTTTATGGTGTTTAATTTGTGGTTGGCTGCAACTGTGTA TCATGTATATGGAACTTGTAAAAAAGTTCTCGACATTCAGATCTTAAGAGATGAAATCACTTTTACCTATAAAAACCACTTTTATTGCGG TTTGACTGCATTGAGCTCTAGGATATTAAATGATATCACTAATATTTTGCATGTAATTTGCTCATTTGAGTGAGGGCACTTTTTTTGTAC ATATGATGGGGCCAATGCACAATACTTTTATCACAATCAACTTTTTCTTTGTATCCCTATTTCAATGAGCAGTCAGTCTCAAGAGGTTAC TGCACTTCAGTTCTAACTAGACATTTGTACTAAGGTATTTCAGTTATGTAAACTCAGCCTGGGCACTTTCTGATAACTGTAAAATGTTTT ATAAGATCATGATTATTGAAGATACATTTTGGAAAATTTTAAATGTTCGTGAGCAGCTTAACTACTTTTGTATCTAGCCTTTTTTAAGTA TCTTGTTACATTTACTTTTTTAAATAAAGAAATTACAGAAGAAATGTCAAGTAATATTGAAGAAACAATAGTTTTTATTTATGTAGTTGT ACATTTTTAAACTAAGGGCAATACACTGACATGGTTATGTGCATAAAAATTTTGACTTAAAGAACTGGAAGTTTATATACACCTGGACTA TAAGAAACAGAAGAAAATCAGTCCACATTTTACAGTTAGCAGAGAATCCTAAATGGCACTGGCCTGGCCACCTTTTCATTTTACAAATGG GGGAAGTGAAGTGTGACCCCTTACTTGGCATAGGAAGTTAACTTACACCTAATAACTGACAGGTTTTTGTTTTGATGACCTATTAATTAT >In-frame_ENST00000220931_ENST00000520539_TCGA-PG-A914-01A_NCALD_chr8_102731480_-_UBR5_chr8_103266742_length(amino acids)=196AA_start in transcript=119_stop in transcript=709 MGKQNSKLRPEVMQDLLESTDFTEHEIQEWYKGFLRDCPSGHLSMEEFKKIYGNFFPYGDASKFAEHVFRTFDANGDGTIDFREFIIALS VTSRGKLEQKLKWAFSMYDLDGNGYISKAEMLEIVQVYFWTSSPSLPASEEGFQPMPSITIRPPDDQHLPTANTCISRLYVPLYSSKQIL -------------------------------------------------------------- >In-frame_ENST00000521599_ENST00000521922_TCGA-PG-A914-01A_NCALD_chr8_102731480_-_UBR5_chr8_103266742_length(transcript)=988nt_BP=671nt GGGGGAGGCGGGCGGAGGGAAGGCGCTGCCGCTGCTGCCGCCGCCTCGCCCGAAGCGACACAGACGCTGGGAGCGGCCGAGGCGAGATCC TATCATTATTTTAAAATTCCTCCTCCTCCACGAAGTCCTTCCTGATTCCTTCAAAGAAATATCACTCCTCCGAATTCCCAGAGTGATTTC TTCTGACTTGAGCCTGCAGTGTGCTGTGAGAGATCTACCACTAGATTATCTCAACTTTGGTCTCCTGGGACCACTCGTTGCTGACAGTCA GAAACTGAATTCTTGCCGCCAGGATGGGGAAACAGAACAGCAAGCTGCGCCCGGAGGTCATGCAGGACTTGCTGGAAAGCACAGACTTTA CAGAGCATGAGATCCAGGAATGGTATAAAGGCTTCTTGAGAGACTGCCCCAGTGGACATTTGTCAATGGAAGAGTTTAAGAAAATATATG GGAACTTTTTCCCTTATGGGGATGCTTCCAAATTTGCAGAGCATGTCTTCCGCACCTTCGATGCAAATGGAGATGGGACAATAGACTTTA GAGAATTCATCATCGCCTTGAGTGTAACTTCGAGGGGGAAGCTGGAGCAGAAGCTGAAATGGGCCTTCAGCATGTACGACCTGGACGGAA ATGGCTATATCAGCAAGGCAGAGATGCTAGAGATCGTGCAGGTTTACTTTTGGACATCAAGCCCATCACTGCCAGCCAGTGAAGAAGGAT TCCAGCCTATGCCCTCAATCACAATAAGACCACCAGATGACCAACATCTTCCTACTGCAAATACTTGCATTTCTCGACTTTACGTCCCAC TCTATTCCTCTAAACAGATTCTCAAACAGAAATTGTTACTCGCCATTAAGACCAAGAATTTTGGTTTTGTGTAGAGTATAAAAAGTGTGT >In-frame_ENST00000521599_ENST00000521922_TCGA-PG-A914-01A_NCALD_chr8_102731480_-_UBR5_chr8_103266742_length(amino acids)=196AA_start in transcript=293_stop in transcript=883 MGKQNSKLRPEVMQDLLESTDFTEHEIQEWYKGFLRDCPSGHLSMEEFKKIYGNFFPYGDASKFAEHVFRTFDANGDGTIDFREFIIALS VTSRGKLEQKLKWAFSMYDLDGNGYISKAEMLEIVQVYFWTSSPSLPASEEGFQPMPSITIRPPDDQHLPTANTCISRLYVPLYSSKQIL -------------------------------------------------------------- >In-frame_ENST00000522951_ENST00000520539_TCGA-PG-A914-01A_NCALD_chr8_102731480_-_UBR5_chr8_103266742_length(transcript)=2016nt_BP=513nt ACACAGTCAAAGGCTTGTGAGAATCTGGTGGATGCTGGACCTTGCTGCTGCTGCTACTGCTGTTTCCAGGGGCTGCAGAGCATGGACTGT TAAATCTTGCACTTCTTCTGAGTGAGCTGAATTCTTGCCGCCAGGATGGGGAAACAGAACAGCAAGCTGCGCCCGGAGGTCATGCAGGAC TTGCTGGAAAGCACAGACTTTACAGAGCATGAGATCCAGGAATGGTATAAAGGCTTCTTGAGAGACTGCCCCAGTGGACATTTGTCAATG GAAGAGTTTAAGAAAATATATGGGAACTTTTTCCCTTATGGGGATGCTTCCAAATTTGCAGAGCATGTCTTCCGCACCTTCGATGCAAAT GGAGATGGGACAATAGACTTTAGAGAATTCATCATCGCCTTGAGTGTAACTTCGAGGGGGAAGCTGGAGCAGAAGCTGAAATGGGCCTTC AGCATGTACGACCTGGACGGAAATGGCTATATCAGCAAGGCAGAGATGCTAGAGATCGTGCAGGTTTACTTTTGGACATCAAGCCCATCA CTGCCAGCCAGTGAAGAAGGATTCCAGCCTATGCCCTCAATCACAATAAGACCACCAGATGACCAACATCTTCCTACTGCAAATACTTGC ATTTCTCGACTTTACGTCCCACTCTATTCCTCTAAACAGATTCTCAAACAGAAATTGTTACTCGCCATTAAGACCAAGAATTTTGGTTTT GTGTAGAGTATAAAAAGTGTGTATTGCTGTGTAATATTACTAGCAAATTTTGTAGATTTTTTTCCATTTGTCTATAAAAGTTTATGGAAG TTAATGCTGTCATACCCCCCTGGTGGTACCTTAAAGAGATAAAATGCAGACATTCCTTGCTGAGTTTATAGCTTAAAGGCCTAAGGAGCA CTAGCAACATTTGGCTATATTGGTTTGCTAGTCACCAACTTCTGGGTCTAACCCCAGCCAAAGATGACAGCAGAACAACATAATTTACAC TGTGATTTATCTTTTTGCTGAGGGGGAAAAAATGTAAATGTTCTGAAAATTCACTGCTGCCTTTGTGGAAACTGTTTCAGCAAAGGTTCT TGTATAGAGGGAATAGGGAATTTCAAAATAAAAAATTAAGTATGTTCTGTGTTTTCATTTTAACTTTTTTTATGGTGTTTAATTTGTGGT TGGCTGCAACTGTGTATCATGTATATGGAACTTGTAAAAAAGTTCTCGACATTCAGATCTTAAGAGATGAAATCACTTTTACCTATAAAA ACCACTTTTATTGCGGTTTGACTGCATTGAGCTCTAGGATATTAAATGATATCACTAATATTTTGCATGTAATTTGCTCATTTGAGTGAG GGCACTTTTTTTGTACATATGATGGGGCCAATGCACAATACTTTTATCACAATCAACTTTTTCTTTGTATCCCTATTTCAATGAGCAGTC AGTCTCAAGAGGTTACTGCACTTCAGTTCTAACTAGACATTTGTACTAAGGTATTTCAGTTATGTAAACTCAGCCTGGGCACTTTCTGAT AACTGTAAAATGTTTTATAAGATCATGATTATTGAAGATACATTTTGGAAAATTTTAAATGTTCGTGAGCAGCTTAACTACTTTTGTATC TAGCCTTTTTTAAGTATCTTGTTACATTTACTTTTTTAAATAAAGAAATTACAGAAGAAATGTCAAGTAATATTGAAGAAACAATAGTTT TTATTTATGTAGTTGTACATTTTTAAACTAAGGGCAATACACTGACATGGTTATGTGCATAAAAATTTTGACTTAAAGAACTGGAAGTTT ATATACACCTGGACTATAAGAAACAGAAGAAAATCAGTCCACATTTTACAGTTAGCAGAGAATCCTAAATGGCACTGGCCTGGCCACCTT TTCATTTTACAAATGGGGGAAGTGAAGTGTGACCCCTTACTTGGCATAGGAAGTTAACTTACACCTAATAACTGACAGGTTTTTGTTTTG >In-frame_ENST00000522951_ENST00000520539_TCGA-PG-A914-01A_NCALD_chr8_102731480_-_UBR5_chr8_103266742_length(amino acids)=196AA_start in transcript=135_stop in transcript=725 MGKQNSKLRPEVMQDLLESTDFTEHEIQEWYKGFLRDCPSGHLSMEEFKKIYGNFFPYGDASKFAEHVFRTFDANGDGTIDFREFIIALS VTSRGKLEQKLKWAFSMYDLDGNGYISKAEMLEIVQVYFWTSSPSLPASEEGFQPMPSITIRPPDDQHLPTANTCISRLYVPLYSSKQIL -------------------------------------------------------------- >In-frame_ENST00000519508_ENST00000220959_TCGA-PG-A914-01A_NCALD_chr8_102731480_-_UBR5_chr8_103266742_length(transcript)=1176nt_BP=397nt CTGAATTCTTGCCGCCAGGATGGGGAAACAGAACAGCAAGCTGCGCCCGGAGGTCATGCAGGACTTGCTGGAAAGCACAGACTTTACAGA GCATGAGATCCAGGAATGGTATAAAGGCTTCTTGAGAGACTGCCCCAGTGGACATTTGTCAATGGAAGAGTTTAAGAAAATATATGGGAA CTTTTTCCCTTATGGGGATGCTTCCAAATTTGCAGAGCATGTCTTCCGCACCTTCGATGCAAATGGAGATGGGACAATAGACTTTAGAGA ATTCATCATCGCCTTGAGTGTAACTTCGAGGGGGAAGCTGGAGCAGAAGCTGAAATGGGCCTTCAGCATGTACGACCTGGACGGAAATGG CTATATCAGCAAGGCAGAGATGCTAGAGATCGTGCAGGTTTACTTTTGGACATCAAGCCCATCACTGCCAGCCAGTGAAGAAGGATTCCA GCCTATGCCCTCAATCACAATAAGACCACCAGATGACCAACATCTTCCTACTGCAAATACTTGCATTTCTCGACTTTACGTCCCACTCTA TTCCTCTAAACAGATTCTCAAACAGAAATTGTTACTCGCCATTAAGACCAAGAATTTTGGTTTTGTGTAGAGTATAAAAAGTGTGTATTG CTGTGTAATATTACTAGCAAATTTTGTAGATTTTTTTCCATTTGTCTATAAAAGTTTATGGAAGTTAATGCTGTCATACCCCCCTGGTGG TACCTTAAAGAGATAAAATGCAGACATTCCTTGCTGAGTTTATAGCTTAAAGGCCTAAGGAGCACTAGCAACATTTGGCTATATTGGTTT GCTAGTCACCAACTTCTGGGTCTAACCCCAGCCAAAGATGACAGCAGAACAACATAATTTACACTGTGATTTATCTTTTTGCTGAGGGGG AAAAAATGTAAATGTTCTGAAAATTCACTGCTGCCTTTGTGGAAACTGTTTCAGCAAAGGTTCTTGTATAGAGGGAATAGGGAATTTCAA AATAAAAAATTAAGTATGTTCTGTGTTTTCATTTTAACTTTTTTTATGGTGTTTAATTTGTGGTTGGCTGCAACTGTGTATCATGTATAT GGAACTTGTAAAAAAGTTCTCGACATTCAGATCTTAAGAGATGAAATCACTTTTACCTATAAAAACCACTTTTATTGCGGTTTGACTGCA >In-frame_ENST00000519508_ENST00000220959_TCGA-PG-A914-01A_NCALD_chr8_102731480_-_UBR5_chr8_103266742_length(amino acids)=196AA_start in transcript=19_stop in transcript=609 MGKQNSKLRPEVMQDLLESTDFTEHEIQEWYKGFLRDCPSGHLSMEEFKKIYGNFFPYGDASKFAEHVFRTFDANGDGTIDFREFIIALS VTSRGKLEQKLKWAFSMYDLDGNGYISKAEMLEIVQVYFWTSSPSLPASEEGFQPMPSITIRPPDDQHLPTANTCISRLYVPLYSSKQIL -------------------------------------------------------------- >In-frame_ENST00000519508_ENST00000518205_TCGA-PG-A914-01A_NCALD_chr8_102731480_-_UBR5_chr8_103266742_length(transcript)=714nt_BP=397nt CTGAATTCTTGCCGCCAGGATGGGGAAACAGAACAGCAAGCTGCGCCCGGAGGTCATGCAGGACTTGCTGGAAAGCACAGACTTTACAGA GCATGAGATCCAGGAATGGTATAAAGGCTTCTTGAGAGACTGCCCCAGTGGACATTTGTCAATGGAAGAGTTTAAGAAAATATATGGGAA CTTTTTCCCTTATGGGGATGCTTCCAAATTTGCAGAGCATGTCTTCCGCACCTTCGATGCAAATGGAGATGGGACAATAGACTTTAGAGA ATTCATCATCGCCTTGAGTGTAACTTCGAGGGGGAAGCTGGAGCAGAAGCTGAAATGGGCCTTCAGCATGTACGACCTGGACGGAAATGG CTATATCAGCAAGGCAGAGATGCTAGAGATCGTGCAGGTTTACTTTTGGACATCAAGCCCATCACTGCCAGCCAGTGAAGAAGGATTCCA GCCTATGCCCTCAATCACAATAAGACCACCAGATGACCAACATCTTCCTACTGCAAATACTTGCATTTCTCGACTTTACGTCCCACTCTA TTCCTCTAAACAGATTCTCAAACAGAAATTGTTACTCGCCATTAAGACCAAGAATTTTGGTTTTGTGTAGAGTATAAAAAGTGTGTATTG >In-frame_ENST00000519508_ENST00000518205_TCGA-PG-A914-01A_NCALD_chr8_102731480_-_UBR5_chr8_103266742_length(amino acids)=196AA_start in transcript=19_stop in transcript=609 MGKQNSKLRPEVMQDLLESTDFTEHEIQEWYKGFLRDCPSGHLSMEEFKKIYGNFFPYGDASKFAEHVFRTFDANGDGTIDFREFIIALS VTSRGKLEQKLKWAFSMYDLDGNGYISKAEMLEIVQVYFWTSSPSLPASEEGFQPMPSITIRPPDDQHLPTANTCISRLYVPLYSSKQIL -------------------------------------------------------------- |
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Fusion Gene PPI Analysis for NCALD-UBR5 |
Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in |
Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
Hgene | Hgene's interactors | Tgene | Tgene's interactors |
- Retained PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
- Lost PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
- Retained PPIs, but lost function due to frame-shift fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Related Drugs for NCALD-UBR5 |
Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.8 2021-05-08) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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Related Diseases for NCALD-UBR5 |
Diseases associated with fusion partners. (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |