|
Fusion Gene Summary | |
Fusion Gene ORF analysis | |
Fusion Genomic Features | |
Fusion Protein Features | |
Fusion Gene Sequence | |
Fusion Gene PPI analysis | |
Related Drugs | |
Related Diseases |
Fusion gene:NCOR1-TTC19 (FusionGDB2 ID:57505) |
Fusion Gene Summary for NCOR1-TTC19 |
Fusion gene summary |
Fusion gene information | Fusion gene name: NCOR1-TTC19 | Fusion gene ID: 57505 | Hgene | Tgene | Gene symbol | NCOR1 | TTC19 | Gene ID | 9611 | 54902 |
Gene name | nuclear receptor corepressor 1 | tetratricopeptide repeat domain 19 | |
Synonyms | N-CoR|N-CoR1|PPP1R109|TRAC1|hN-CoR | 2010204O13Rik|MC3DN2 | |
Cytomap | 17p12-p11.2 | 17p12 | |
Type of gene | protein-coding | protein-coding | |
Description | nuclear receptor corepressor 1protein phosphatase 1, regulatory subunit 109thyroid hormone- and retinoic acid receptor-associated corepressor 1 | tetratricopeptide repeat protein 19, mitochondrialTPR repeat protein 19 | |
Modification date | 20200313 | 20200327 | |
UniProtAcc | O75376 | . | |
Ensembl transtripts involved in fusion gene | ENST00000268712, ENST00000395851, ENST00000395857, ENST00000395848, ENST00000583226, | ENST00000261647, ENST00000486880, ENST00000497842, | |
Fusion gene scores | * DoF score | 30 X 30 X 13=11700 | 10 X 9 X 5=450 |
# samples | 33 | 10 | |
** MAII score | log2(33/11700*10)=-5.14789869511231 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(10/450*10)=-2.16992500144231 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
Context | PubMed: NCOR1 [Title/Abstract] AND TTC19 [Title/Abstract] AND fusion [Title/Abstract] | ||
Most frequent breakpoint | NCOR1(15960827)-TTC19(15928330), # samples:1 TTC19(15930017)-NCOR1(15938260), # samples:1 | ||
Anticipated loss of major functional domain due to fusion event. | NCOR1-TTC19 seems lost the major protein functional domain in Hgene partner, which is a CGC due to the frame-shifted ORF. NCOR1-TTC19 seems lost the major protein functional domain in Hgene partner, which is a cell metabolism gene due to the frame-shifted ORF. NCOR1-TTC19 seems lost the major protein functional domain in Hgene partner, which is a epigenetic factor due to the frame-shifted ORF. NCOR1-TTC19 seems lost the major protein functional domain in Tgene partner, which is a essential gene due to the frame-shifted ORF. |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
Partner | Gene | GO ID | GO term | PubMed ID |
Hgene | NCOR1 | GO:0046329 | negative regulation of JNK cascade | 11931768 |
Fusion gene breakpoints across NCOR1 (5'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
Fusion gene breakpoints across TTC19 (3'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Source | Disease | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
ChimerDB4 | STAD | TCGA-FP-A4BE | NCOR1 | chr17 | 15960827 | - | TTC19 | chr17 | 15928330 | + |
Top |
Fusion Gene ORF analysis for NCOR1-TTC19 |
Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
In-frame | ENST00000268712 | ENST00000261647 | NCOR1 | chr17 | 15960827 | - | TTC19 | chr17 | 15928330 | + |
In-frame | ENST00000268712 | ENST00000486880 | NCOR1 | chr17 | 15960827 | - | TTC19 | chr17 | 15928330 | + |
5CDS-3UTR | ENST00000268712 | ENST00000497842 | NCOR1 | chr17 | 15960827 | - | TTC19 | chr17 | 15928330 | + |
Frame-shift | ENST00000395851 | ENST00000261647 | NCOR1 | chr17 | 15960827 | - | TTC19 | chr17 | 15928330 | + |
Frame-shift | ENST00000395851 | ENST00000486880 | NCOR1 | chr17 | 15960827 | - | TTC19 | chr17 | 15928330 | + |
5CDS-3UTR | ENST00000395851 | ENST00000497842 | NCOR1 | chr17 | 15960827 | - | TTC19 | chr17 | 15928330 | + |
Frame-shift | ENST00000395857 | ENST00000261647 | NCOR1 | chr17 | 15960827 | - | TTC19 | chr17 | 15928330 | + |
Frame-shift | ENST00000395857 | ENST00000486880 | NCOR1 | chr17 | 15960827 | - | TTC19 | chr17 | 15928330 | + |
5CDS-3UTR | ENST00000395857 | ENST00000497842 | NCOR1 | chr17 | 15960827 | - | TTC19 | chr17 | 15928330 | + |
intron-3CDS | ENST00000395848 | ENST00000261647 | NCOR1 | chr17 | 15960827 | - | TTC19 | chr17 | 15928330 | + |
intron-3CDS | ENST00000395848 | ENST00000486880 | NCOR1 | chr17 | 15960827 | - | TTC19 | chr17 | 15928330 | + |
intron-3UTR | ENST00000395848 | ENST00000497842 | NCOR1 | chr17 | 15960827 | - | TTC19 | chr17 | 15928330 | + |
intron-3CDS | ENST00000583226 | ENST00000261647 | NCOR1 | chr17 | 15960827 | - | TTC19 | chr17 | 15928330 | + |
intron-3CDS | ENST00000583226 | ENST00000486880 | NCOR1 | chr17 | 15960827 | - | TTC19 | chr17 | 15928330 | + |
intron-3UTR | ENST00000583226 | ENST00000497842 | NCOR1 | chr17 | 15960827 | - | TTC19 | chr17 | 15928330 | + |
ORFfinder result based on the fusion transcript sequence of in-frame fusion genes. |
Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | Seq length (transcript) | BP loci (transcript) | Predicted start (transcript) | Predicted stop (transcript) | Seq length (amino acids) |
DeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated. |
Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | No-coding score | Coding score |
Top |
Fusion Genomic Features for NCOR1-TTC19 |
FusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints. |
Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | 1-p | p (fusion gene breakpoint) |
NCOR1 | chr17 | 15960827 | - | TTC19 | chr17 | 15928330 | + | 3.85E-05 | 0.9999615 |
NCOR1 | chr17 | 15960827 | - | TTC19 | chr17 | 15928330 | + | 3.85E-05 | 0.9999615 |
Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page. |
Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page. |
Top |
Fusion Protein Features for NCOR1-TTC19 |
Go to FGviewer for the breakpoints of chr17:15960827-chr17:15928330 - FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels. |
Main function of each fusion partner protein. (from UniProt) |
Hgene | Tgene |
NCOR1 | . |
FUNCTION: Mediates transcriptional repression by certain nuclear receptors (PubMed:20812024). Part of a complex which promotes histone deacetylation and the formation of repressive chromatin structures which may impede the access of basal transcription factors. Participates in the transcriptional repressor activity produced by BCL6. Recruited by ZBTB7A to the androgen response elements/ARE on target genes, negatively regulates androgen receptor signaling and androgen-induced cell proliferation (PubMed:20812024). Mediates the NR1D1-dependent repression and circadian regulation of TSHB expression (By similarity). The NCOR1-HDAC3 complex regulates the circadian expression of the core clock gene ARTNL/BMAL1 and the genes involved in lipid metabolism in the liver (By similarity). {ECO:0000250|UniProtKB:Q60974, ECO:0000269|PubMed:14527417, ECO:0000269|PubMed:20812024}. | FUNCTION: Might normally function as a transcriptional repressor. EWS-fusion-proteins (EFPS) may play a role in the tumorigenic process. They may disturb gene expression by mimicking, or interfering with the normal function of CTD-POLII within the transcription initiation complex. They may also contribute to an aberrant activation of the fusion protein target genes. |
Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | NCOR1 | chr17:15960827 | chr17:15928330 | ENST00000268712 | - | 40 | 46 | 174_216 | 2130.6666666666665 | 2441.0 | Coiled coil | Ontology_term=ECO:0000255 |
Hgene | NCOR1 | chr17:15960827 | chr17:15928330 | ENST00000268712 | - | 40 | 46 | 299_328 | 2130.6666666666665 | 2441.0 | Coiled coil | Ontology_term=ECO:0000255 |
Hgene | NCOR1 | chr17:15960827 | chr17:15928330 | ENST00000268712 | - | 40 | 46 | 501_557 | 2130.6666666666665 | 2441.0 | Coiled coil | Ontology_term=ECO:0000255 |
Hgene | NCOR1 | chr17:15960827 | chr17:15928330 | ENST00000395851 | - | 39 | 45 | 174_216 | 2027.6666666666667 | 2338.0 | Coiled coil | Ontology_term=ECO:0000255 |
Hgene | NCOR1 | chr17:15960827 | chr17:15928330 | ENST00000395851 | - | 39 | 45 | 299_328 | 2027.6666666666667 | 2338.0 | Coiled coil | Ontology_term=ECO:0000255 |
Hgene | NCOR1 | chr17:15960827 | chr17:15928330 | ENST00000395851 | - | 39 | 45 | 501_557 | 2027.6666666666667 | 2338.0 | Coiled coil | Ontology_term=ECO:0000255 |
Hgene | NCOR1 | chr17:15960827 | chr17:15928330 | ENST00000268712 | - | 40 | 46 | 1032_1035 | 2130.6666666666665 | 2441.0 | Compositional bias | Note=Poly-Pro |
Hgene | NCOR1 | chr17:15960827 | chr17:15928330 | ENST00000268712 | - | 40 | 46 | 1707_1712 | 2130.6666666666665 | 2441.0 | Compositional bias | Note=Poly-Ala |
Hgene | NCOR1 | chr17:15960827 | chr17:15928330 | ENST00000268712 | - | 40 | 46 | 1952_1963 | 2130.6666666666665 | 2441.0 | Compositional bias | Note=Poly-Ser |
Hgene | NCOR1 | chr17:15960827 | chr17:15928330 | ENST00000268712 | - | 40 | 46 | 58_64 | 2130.6666666666665 | 2441.0 | Compositional bias | Note=Poly-Gln |
Hgene | NCOR1 | chr17:15960827 | chr17:15928330 | ENST00000268712 | - | 40 | 46 | 593_603 | 2130.6666666666665 | 2441.0 | Compositional bias | Note=Poly-Ala |
Hgene | NCOR1 | chr17:15960827 | chr17:15928330 | ENST00000268712 | - | 40 | 46 | 607_617 | 2130.6666666666665 | 2441.0 | Compositional bias | Note=Pro-rich |
Hgene | NCOR1 | chr17:15960827 | chr17:15928330 | ENST00000395851 | - | 39 | 45 | 1032_1035 | 2027.6666666666667 | 2338.0 | Compositional bias | Note=Poly-Pro |
Hgene | NCOR1 | chr17:15960827 | chr17:15928330 | ENST00000395851 | - | 39 | 45 | 1707_1712 | 2027.6666666666667 | 2338.0 | Compositional bias | Note=Poly-Ala |
Hgene | NCOR1 | chr17:15960827 | chr17:15928330 | ENST00000395851 | - | 39 | 45 | 1952_1963 | 2027.6666666666667 | 2338.0 | Compositional bias | Note=Poly-Ser |
Hgene | NCOR1 | chr17:15960827 | chr17:15928330 | ENST00000395851 | - | 39 | 45 | 58_64 | 2027.6666666666667 | 2338.0 | Compositional bias | Note=Poly-Gln |
Hgene | NCOR1 | chr17:15960827 | chr17:15928330 | ENST00000395851 | - | 39 | 45 | 593_603 | 2027.6666666666667 | 2338.0 | Compositional bias | Note=Poly-Ala |
Hgene | NCOR1 | chr17:15960827 | chr17:15928330 | ENST00000395851 | - | 39 | 45 | 607_617 | 2027.6666666666667 | 2338.0 | Compositional bias | Note=Pro-rich |
Hgene | NCOR1 | chr17:15960827 | chr17:15928330 | ENST00000268712 | - | 40 | 46 | 435_486 | 2130.6666666666665 | 2441.0 | Domain | SANT 1 |
Hgene | NCOR1 | chr17:15960827 | chr17:15928330 | ENST00000268712 | - | 40 | 46 | 623_674 | 2130.6666666666665 | 2441.0 | Domain | SANT 2 |
Hgene | NCOR1 | chr17:15960827 | chr17:15928330 | ENST00000395851 | - | 39 | 45 | 435_486 | 2027.6666666666667 | 2338.0 | Domain | SANT 1 |
Hgene | NCOR1 | chr17:15960827 | chr17:15928330 | ENST00000395851 | - | 39 | 45 | 623_674 | 2027.6666666666667 | 2338.0 | Domain | SANT 2 |
Hgene | NCOR1 | chr17:15960827 | chr17:15928330 | ENST00000268712 | - | 40 | 46 | 1933_1937 | 2130.6666666666665 | 2441.0 | Motif | Note=CORNR box 1 |
Hgene | NCOR1 | chr17:15960827 | chr17:15928330 | ENST00000268712 | - | 40 | 46 | 2055_2059 | 2130.6666666666665 | 2441.0 | Motif | Note=CORNR box 2 |
Hgene | NCOR1 | chr17:15960827 | chr17:15928330 | ENST00000395851 | - | 39 | 45 | 1933_1937 | 2027.6666666666667 | 2338.0 | Motif | Note=CORNR box 1 |
Hgene | NCOR1 | chr17:15960827 | chr17:15928330 | ENST00000268712 | - | 40 | 46 | 2032_2115 | 2130.6666666666665 | 2441.0 | Region | ID1 |
Tgene | TTC19 | chr17:15960827 | chr17:15928330 | ENST00000261647 | 6 | 10 | 237_270 | 225.33333333333334 | 381.0 | Repeat | Note=TPR 3 | |
Tgene | TTC19 | chr17:15960827 | chr17:15928330 | ENST00000261647 | 6 | 10 | 279_312 | 225.33333333333334 | 381.0 | Repeat | Note=TPR 4 | |
Tgene | TTC19 | chr17:15960827 | chr17:15928330 | ENST00000261647 | 6 | 10 | 318_351 | 225.33333333333334 | 381.0 | Repeat | Note=TPR 5 |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | NCOR1 | chr17:15960827 | chr17:15928330 | ENST00000395848 | - | 1 | 19 | 174_216 | 0 | 915.0 | Coiled coil | Ontology_term=ECO:0000255 |
Hgene | NCOR1 | chr17:15960827 | chr17:15928330 | ENST00000395848 | - | 1 | 19 | 299_328 | 0 | 915.0 | Coiled coil | Ontology_term=ECO:0000255 |
Hgene | NCOR1 | chr17:15960827 | chr17:15928330 | ENST00000395848 | - | 1 | 19 | 501_557 | 0 | 915.0 | Coiled coil | Ontology_term=ECO:0000255 |
Hgene | NCOR1 | chr17:15960827 | chr17:15928330 | ENST00000395848 | - | 1 | 19 | 1032_1035 | 0 | 915.0 | Compositional bias | Note=Poly-Pro |
Hgene | NCOR1 | chr17:15960827 | chr17:15928330 | ENST00000395848 | - | 1 | 19 | 1707_1712 | 0 | 915.0 | Compositional bias | Note=Poly-Ala |
Hgene | NCOR1 | chr17:15960827 | chr17:15928330 | ENST00000395848 | - | 1 | 19 | 1952_1963 | 0 | 915.0 | Compositional bias | Note=Poly-Ser |
Hgene | NCOR1 | chr17:15960827 | chr17:15928330 | ENST00000395848 | - | 1 | 19 | 58_64 | 0 | 915.0 | Compositional bias | Note=Poly-Gln |
Hgene | NCOR1 | chr17:15960827 | chr17:15928330 | ENST00000395848 | - | 1 | 19 | 593_603 | 0 | 915.0 | Compositional bias | Note=Poly-Ala |
Hgene | NCOR1 | chr17:15960827 | chr17:15928330 | ENST00000395848 | - | 1 | 19 | 607_617 | 0 | 915.0 | Compositional bias | Note=Pro-rich |
Hgene | NCOR1 | chr17:15960827 | chr17:15928330 | ENST00000395848 | - | 1 | 19 | 435_486 | 0 | 915.0 | Domain | SANT 1 |
Hgene | NCOR1 | chr17:15960827 | chr17:15928330 | ENST00000395848 | - | 1 | 19 | 623_674 | 0 | 915.0 | Domain | SANT 2 |
Hgene | NCOR1 | chr17:15960827 | chr17:15928330 | ENST00000268712 | - | 40 | 46 | 2263_2267 | 2130.6666666666665 | 2441.0 | Motif | Note=CORNR box 3 |
Hgene | NCOR1 | chr17:15960827 | chr17:15928330 | ENST00000395848 | - | 1 | 19 | 1933_1937 | 0 | 915.0 | Motif | Note=CORNR box 1 |
Hgene | NCOR1 | chr17:15960827 | chr17:15928330 | ENST00000395848 | - | 1 | 19 | 2055_2059 | 0 | 915.0 | Motif | Note=CORNR box 2 |
Hgene | NCOR1 | chr17:15960827 | chr17:15928330 | ENST00000395848 | - | 1 | 19 | 2263_2267 | 0 | 915.0 | Motif | Note=CORNR box 3 |
Hgene | NCOR1 | chr17:15960827 | chr17:15928330 | ENST00000395851 | - | 39 | 45 | 2055_2059 | 2027.6666666666667 | 2338.0 | Motif | Note=CORNR box 2 |
Hgene | NCOR1 | chr17:15960827 | chr17:15928330 | ENST00000395851 | - | 39 | 45 | 2263_2267 | 2027.6666666666667 | 2338.0 | Motif | Note=CORNR box 3 |
Hgene | NCOR1 | chr17:15960827 | chr17:15928330 | ENST00000268712 | - | 40 | 46 | 2212_2273 | 2130.6666666666665 | 2441.0 | Region | ID2 |
Hgene | NCOR1 | chr17:15960827 | chr17:15928330 | ENST00000395848 | - | 1 | 19 | 2032_2115 | 0 | 915.0 | Region | ID1 |
Hgene | NCOR1 | chr17:15960827 | chr17:15928330 | ENST00000395848 | - | 1 | 19 | 2212_2273 | 0 | 915.0 | Region | ID2 |
Hgene | NCOR1 | chr17:15960827 | chr17:15928330 | ENST00000395851 | - | 39 | 45 | 2032_2115 | 2027.6666666666667 | 2338.0 | Region | ID1 |
Hgene | NCOR1 | chr17:15960827 | chr17:15928330 | ENST00000395851 | - | 39 | 45 | 2212_2273 | 2027.6666666666667 | 2338.0 | Region | ID2 |
Tgene | TTC19 | chr17:15960827 | chr17:15928330 | ENST00000261647 | 6 | 10 | 73_76 | 225.33333333333334 | 381.0 | Compositional bias | Note=Poly-Glu | |
Tgene | TTC19 | chr17:15960827 | chr17:15928330 | ENST00000486880 | 6 | 10 | 73_76 | 346.3333333333333 | 502.0 | Compositional bias | Note=Poly-Glu | |
Tgene | TTC19 | chr17:15960827 | chr17:15928330 | ENST00000261647 | 6 | 10 | 136_169 | 225.33333333333334 | 381.0 | Repeat | Note=TPR 1 | |
Tgene | TTC19 | chr17:15960827 | chr17:15928330 | ENST00000261647 | 6 | 10 | 179_212 | 225.33333333333334 | 381.0 | Repeat | Note=TPR 2 | |
Tgene | TTC19 | chr17:15960827 | chr17:15928330 | ENST00000486880 | 6 | 10 | 136_169 | 346.3333333333333 | 502.0 | Repeat | Note=TPR 1 | |
Tgene | TTC19 | chr17:15960827 | chr17:15928330 | ENST00000486880 | 6 | 10 | 179_212 | 346.3333333333333 | 502.0 | Repeat | Note=TPR 2 | |
Tgene | TTC19 | chr17:15960827 | chr17:15928330 | ENST00000486880 | 6 | 10 | 237_270 | 346.3333333333333 | 502.0 | Repeat | Note=TPR 3 | |
Tgene | TTC19 | chr17:15960827 | chr17:15928330 | ENST00000486880 | 6 | 10 | 279_312 | 346.3333333333333 | 502.0 | Repeat | Note=TPR 4 | |
Tgene | TTC19 | chr17:15960827 | chr17:15928330 | ENST00000486880 | 6 | 10 | 318_351 | 346.3333333333333 | 502.0 | Repeat | Note=TPR 5 |
Top |
Fusion Gene Sequence for NCOR1-TTC19 |
For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones. |
Top |
Fusion Gene PPI Analysis for NCOR1-TTC19 |
Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in |
Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
Hgene | Hgene's interactors | Tgene | Tgene's interactors |
- Retained PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
Hgene | NCOR1 | chr17:15960827 | chr17:15928330 | ENST00000268712 | - | 40 | 46 | 988_1816 | 2130.6666666666665 | 2441.0 | ETO |
Hgene | NCOR1 | chr17:15960827 | chr17:15928330 | ENST00000395851 | - | 39 | 45 | 988_1816 | 2027.6666666666667 | 2338.0 | ETO |
Hgene | NCOR1 | chr17:15960827 | chr17:15928330 | ENST00000268712 | - | 40 | 46 | 254_312 | 2130.6666666666665 | 2441.0 | SIN3A/B |
Hgene | NCOR1 | chr17:15960827 | chr17:15928330 | ENST00000395851 | - | 39 | 45 | 254_312 | 2027.6666666666667 | 2338.0 | SIN3A/B |
Hgene | NCOR1 | chr17:15960827 | chr17:15928330 | ENST00000268712 | - | 40 | 46 | 1_373 | 2130.6666666666665 | 2441.0 | ZBTB33 and HEXIM1 |
Hgene | NCOR1 | chr17:15960827 | chr17:15928330 | ENST00000395851 | - | 39 | 45 | 1_373 | 2027.6666666666667 | 2338.0 | ZBTB33 and HEXIM1 |
- Lost PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
Hgene | NCOR1 | chr17:15960827 | chr17:15928330 | ENST00000268712 | - | 40 | 46 | 1501_2440 | 2130.6666666666665 | 2441.0 | C1D |
Hgene | NCOR1 | chr17:15960827 | chr17:15928330 | ENST00000395848 | - | 1 | 19 | 1501_2440 | 0 | 915.0 | C1D |
Hgene | NCOR1 | chr17:15960827 | chr17:15928330 | ENST00000395851 | - | 39 | 45 | 1501_2440 | 2027.6666666666667 | 2338.0 | C1D |
Hgene | NCOR1 | chr17:15960827 | chr17:15928330 | ENST00000395848 | - | 1 | 19 | 988_1816 | 0 | 915.0 | ETO |
Hgene | NCOR1 | chr17:15960827 | chr17:15928330 | ENST00000395848 | - | 1 | 19 | 254_312 | 0 | 915.0 | SIN3A/B |
Hgene | NCOR1 | chr17:15960827 | chr17:15928330 | ENST00000395848 | - | 1 | 19 | 1_373 | 0 | 915.0 | ZBTB33 and HEXIM1 |
- Retained PPIs, but lost function due to frame-shift fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
Top |
Related Drugs for NCOR1-TTC19 |
Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.8 2021-05-08) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
Top |
Related Diseases for NCOR1-TTC19 |
Diseases associated with fusion partners. (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Hgene | NCOR1 | C0005684 | Malignant neoplasm of urinary bladder | 1 | CTD_human |
Hgene | NCOR1 | C0005695 | Bladder Neoplasm | 1 | CTD_human |
Hgene | NCOR1 | C0006142 | Malignant neoplasm of breast | 1 | CGI;CTD_human |
Hgene | NCOR1 | C0007138 | Carcinoma, Transitional Cell | 1 | CTD_human |
Hgene | NCOR1 | C0014175 | Endometriosis | 1 | CTD_human |
Hgene | NCOR1 | C0017636 | Glioblastoma | 1 | CTD_human |
Hgene | NCOR1 | C0023903 | Liver neoplasms | 1 | CTD_human |
Hgene | NCOR1 | C0033578 | Prostatic Neoplasms | 1 | CTD_human |
Hgene | NCOR1 | C0269102 | Endometrioma | 1 | CTD_human |
Hgene | NCOR1 | C0334588 | Giant Cell Glioblastoma | 1 | CTD_human |
Hgene | NCOR1 | C0345904 | Malignant neoplasm of liver | 1 | CTD_human |
Hgene | NCOR1 | C0376358 | Malignant neoplasm of prostate | 1 | CTD_human |
Hgene | NCOR1 | C0678222 | Breast Carcinoma | 1 | CGI;CTD_human |
Hgene | NCOR1 | C0857007 | Hyperbilirubinemia, Neonatal | 1 | CTD_human |
Hgene | NCOR1 | C1257931 | Mammary Neoplasms, Human | 1 | CTD_human |
Hgene | NCOR1 | C1458155 | Mammary Neoplasms | 1 | CTD_human |
Hgene | NCOR1 | C1565885 | Direct Hyperbilirubinemia, Neonatal | 1 | CTD_human |
Hgene | NCOR1 | C1565886 | Indirect Hyperbilirubinemia, Neonatal | 1 | CTD_human |
Hgene | NCOR1 | C1621958 | Glioblastoma Multiforme | 1 | CTD_human |
Hgene | NCOR1 | C4704874 | Mammary Carcinoma, Human | 1 | CTD_human |
Tgene | TTC19 | C0023264 | Leigh Disease | 8 | CLINGEN |
Tgene | TTC19 | C1838951 | LEIGH SYNDROME DUE TO MITOCHONDRIAL COMPLEX I DEFICIENCY | 8 | CLINGEN |
Tgene | TTC19 | C1850597 | Leigh Syndrome Due To Mitochondrial Complex II Deficiency | 8 | CLINGEN |
Tgene | TTC19 | C1850598 | Leigh Syndrome due to Mitochondrial Complex III Deficiency | 8 | CLINGEN |
Tgene | TTC19 | C1850599 | Leigh Syndrome due to Mitochondrial Complex IV Deficiency | 8 | CLINGEN |
Tgene | TTC19 | C1850600 | Leigh Syndrome due to Mitochondrial Complex V Deficiency | 8 | CLINGEN |
Tgene | TTC19 | C2931891 | Necrotizing encephalopathy, infantile subacute, of Leigh | 8 | CLINGEN |
Tgene | TTC19 | C3554605 | MITOCHONDRIAL COMPLEX III DEFICIENCY, NUCLEAR TYPE 2 | 2 | GENOMICS_ENGLAND |
Tgene | TTC19 | C0021359 | Infertility | 1 | CTD_human |
Tgene | TTC19 | C0027765 | nervous system disorder | 1 | CTD_human |
Tgene | TTC19 | C0231686 | Gait, Unsteady | 1 | CTD_human |
Tgene | TTC19 | C0231687 | Spastic gait | 1 | CTD_human |
Tgene | TTC19 | C0231688 | Gait, Shuffling | 1 | CTD_human |
Tgene | TTC19 | C0231689 | Gait, Athetotic | 1 | CTD_human |
Tgene | TTC19 | C0231693 | Charcot Gait | 1 | CTD_human |
Tgene | TTC19 | C0231694 | Gait, Festinating | 1 | CTD_human |
Tgene | TTC19 | C0231695 | Cerebellar ataxic gait | 1 | CTD_human |
Tgene | TTC19 | C0231696 | Gait, Hemiplegic | 1 | CTD_human |
Tgene | TTC19 | C0231698 | Gait, Scissors | 1 | CTD_human |
Tgene | TTC19 | C0231712 | Waddling gait | 1 | CTD_human |
Tgene | TTC19 | C0234996 | Gait, Rigid | 1 | CTD_human |
Tgene | TTC19 | C0235000 | Gait, Broadened | 1 | CTD_human |
Tgene | TTC19 | C0270715 | Degenerative Diseases, Central Nervous System | 1 | CTD_human |
Tgene | TTC19 | C0337210 | Gait, Stumbling | 1 | CTD_human |
Tgene | TTC19 | C0427128 | Rapid Fatigue of Gait | 1 | CTD_human |
Tgene | TTC19 | C0427149 | Gait, Drop Foot | 1 | CTD_human |
Tgene | TTC19 | C0427169 | Marche a Petit Pas | 1 | CTD_human |
Tgene | TTC19 | C0427177 | Gait, Hysterical | 1 | CTD_human |
Tgene | TTC19 | C0524851 | Neurodegenerative Disorders | 1 | CTD_human |
Tgene | TTC19 | C0729353 | Subfertility | 1 | CTD_human |
Tgene | TTC19 | C0751651 | Mitochondrial Diseases | 1 | GENOMICS_ENGLAND |
Tgene | TTC19 | C0751733 | Degenerative Diseases, Spinal Cord | 1 | CTD_human |
Tgene | TTC19 | C0751829 | Gait Disorder, Sensorimotor | 1 | CTD_human |
Tgene | TTC19 | C0751830 | Gait Disorders, Neurologic | 1 | CTD_human |
Tgene | TTC19 | C0751831 | Gait, Frontal | 1 | CTD_human |
Tgene | TTC19 | C0751832 | Gait, Widebased | 1 | CTD_human |
Tgene | TTC19 | C4074771 | Sterility, Reproductive | 1 | CTD_human |