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Center for Computational Systems Medicine
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Fusion Gene Summary

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Fusion Gene ORF analysis

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Fusion Genomic Features

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Fusion Protein Features

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Fusion Gene Sequence

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Fusion Gene PPI analysis

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Related Drugs

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Related Diseases

Fusion gene:NFRKB-NOX4 (FusionGDB2 ID:58639)

Fusion Gene Summary for NFRKB-NOX4

check button Fusion gene summary
Fusion gene informationFusion gene name: NFRKB-NOX4
Fusion gene ID: 58639
HgeneTgene
Gene symbol

NFRKB

NOX4

Gene ID

4798

50507

Gene namenuclear factor related to kappaB binding proteinNADPH oxidase 4
SynonymsINO80GKOX|KOX-1|RENOX
Cytomap

11q24.3

11q14.3

Type of geneprotein-codingprotein-coding
Descriptionnuclear factor related to kappa-B-binding proteinDNA-binding protein R kappa BINO80 complex subunit GNADPH oxidase 4kidney oxidase-1kidney superoxide-producing NADPH oxidaserenal NAD(P)H-oxidase
Modification date2020031320200313
UniProtAcc

Q6P4R8

Q9NPH5

Ensembl transtripts involved in fusion geneENST00000446488, ENST00000304521, 
ENST00000524794, ENST00000524746, 
ENST00000526940, 
ENST00000535633, 
ENST00000424319, ENST00000343727, 
ENST00000534731, ENST00000525196, 
ENST00000263317, ENST00000532825, 
ENST00000527956, ENST00000542487, 
ENST00000527626, ENST00000528341, 
ENST00000413594, ENST00000375979, 
ENST00000531342, ENST00000393282, 
Fusion gene scores* DoF score6 X 7 X 6=2524 X 3 X 2=24
# samples 74
** MAII scorelog2(7/252*10)=-1.84799690655495
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
log2(4/24*10)=0.736965594166206
effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs).
DoF>8 and MAII>0
Context

PubMed: NFRKB [Title/Abstract] AND NOX4 [Title/Abstract] AND fusion [Title/Abstract]

Most frequent breakpointNFRKB(129755330)-NOX4(89135710), # samples:2
Anticipated loss of major functional domain due to fusion event.NFRKB-NOX4 seems lost the major protein functional domain in Hgene partner, which is a essential gene due to the frame-shifted ORF.
NFRKB-NOX4 seems lost the major protein functional domain in Hgene partner, which is a epigenetic factor due to the frame-shifted ORF.
NFRKB-NOX4 seems lost the major protein functional domain in Tgene partner, which is a IUPHAR drug target due to the frame-shifted ORF.
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
TgeneNOX4

GO:0006801

superoxide metabolic process

18760347

TgeneNOX4

GO:0050667

homocysteine metabolic process

20031578

TgeneNOX4

GO:0055114

oxidation-reduction process

10869423

TgeneNOX4

GO:0072593

reactive oxygen species metabolic process

10869423


check buttonFusion gene breakpoints across NFRKB (5'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.

check buttonFusion gene breakpoints across NOX4 (3'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.

check button Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0)
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
SourceDiseaseSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
ChimerDB4BRCATCGA-E9-A229-01ANFRKBchr11

129755330

-NOX4chr11

89135710

-
ChimerDB4BRCATCGA-E9-A229-01ANFRKBchr11

129755330

-NOX4chr11

89135710

-


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Fusion Gene ORF analysis for NFRKB-NOX4

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
Frame-shiftENST00000446488ENST00000535633NFRKBchr11

129755330

-NOX4chr11

89135710

-
Frame-shiftENST00000446488ENST00000424319NFRKBchr11

129755330

-NOX4chr11

89135710

-
Frame-shiftENST00000446488ENST00000343727NFRKBchr11

129755330

-NOX4chr11

89135710

-
Frame-shiftENST00000446488ENST00000534731NFRKBchr11

129755330

-NOX4chr11

89135710

-
5CDS-intronENST00000446488ENST00000525196NFRKBchr11

129755330

-NOX4chr11

89135710

-
5CDS-intronENST00000446488ENST00000263317NFRKBchr11

129755330

-NOX4chr11

89135710

-
5CDS-intronENST00000446488ENST00000532825NFRKBchr11

129755330

-NOX4chr11

89135710

-
5CDS-intronENST00000446488ENST00000527956NFRKBchr11

129755330

-NOX4chr11

89135710

-
5CDS-intronENST00000446488ENST00000542487NFRKBchr11

129755330

-NOX4chr11

89135710

-
5CDS-intronENST00000446488ENST00000527626NFRKBchr11

129755330

-NOX4chr11

89135710

-
5CDS-intronENST00000446488ENST00000528341NFRKBchr11

129755330

-NOX4chr11

89135710

-
5CDS-intronENST00000446488ENST00000413594NFRKBchr11

129755330

-NOX4chr11

89135710

-
5CDS-intronENST00000446488ENST00000375979NFRKBchr11

129755330

-NOX4chr11

89135710

-
5CDS-intronENST00000446488ENST00000531342NFRKBchr11

129755330

-NOX4chr11

89135710

-
5CDS-intronENST00000446488ENST00000393282NFRKBchr11

129755330

-NOX4chr11

89135710

-
Frame-shiftENST00000304521ENST00000535633NFRKBchr11

129755330

-NOX4chr11

89135710

-
Frame-shiftENST00000304521ENST00000424319NFRKBchr11

129755330

-NOX4chr11

89135710

-
Frame-shiftENST00000304521ENST00000343727NFRKBchr11

129755330

-NOX4chr11

89135710

-
Frame-shiftENST00000304521ENST00000534731NFRKBchr11

129755330

-NOX4chr11

89135710

-
5CDS-intronENST00000304521ENST00000525196NFRKBchr11

129755330

-NOX4chr11

89135710

-
5CDS-intronENST00000304521ENST00000263317NFRKBchr11

129755330

-NOX4chr11

89135710

-
5CDS-intronENST00000304521ENST00000532825NFRKBchr11

129755330

-NOX4chr11

89135710

-
5CDS-intronENST00000304521ENST00000527956NFRKBchr11

129755330

-NOX4chr11

89135710

-
5CDS-intronENST00000304521ENST00000542487NFRKBchr11

129755330

-NOX4chr11

89135710

-
5CDS-intronENST00000304521ENST00000527626NFRKBchr11

129755330

-NOX4chr11

89135710

-
5CDS-intronENST00000304521ENST00000528341NFRKBchr11

129755330

-NOX4chr11

89135710

-
5CDS-intronENST00000304521ENST00000413594NFRKBchr11

129755330

-NOX4chr11

89135710

-
5CDS-intronENST00000304521ENST00000375979NFRKBchr11

129755330

-NOX4chr11

89135710

-
5CDS-intronENST00000304521ENST00000531342NFRKBchr11

129755330

-NOX4chr11

89135710

-
5CDS-intronENST00000304521ENST00000393282NFRKBchr11

129755330

-NOX4chr11

89135710

-
Frame-shiftENST00000524794ENST00000535633NFRKBchr11

129755330

-NOX4chr11

89135710

-
Frame-shiftENST00000524794ENST00000424319NFRKBchr11

129755330

-NOX4chr11

89135710

-
Frame-shiftENST00000524794ENST00000343727NFRKBchr11

129755330

-NOX4chr11

89135710

-
Frame-shiftENST00000524794ENST00000534731NFRKBchr11

129755330

-NOX4chr11

89135710

-
5CDS-intronENST00000524794ENST00000525196NFRKBchr11

129755330

-NOX4chr11

89135710

-
5CDS-intronENST00000524794ENST00000263317NFRKBchr11

129755330

-NOX4chr11

89135710

-
5CDS-intronENST00000524794ENST00000532825NFRKBchr11

129755330

-NOX4chr11

89135710

-
5CDS-intronENST00000524794ENST00000527956NFRKBchr11

129755330

-NOX4chr11

89135710

-
5CDS-intronENST00000524794ENST00000542487NFRKBchr11

129755330

-NOX4chr11

89135710

-
5CDS-intronENST00000524794ENST00000527626NFRKBchr11

129755330

-NOX4chr11

89135710

-
5CDS-intronENST00000524794ENST00000528341NFRKBchr11

129755330

-NOX4chr11

89135710

-
5CDS-intronENST00000524794ENST00000413594NFRKBchr11

129755330

-NOX4chr11

89135710

-
5CDS-intronENST00000524794ENST00000375979NFRKBchr11

129755330

-NOX4chr11

89135710

-
5CDS-intronENST00000524794ENST00000531342NFRKBchr11

129755330

-NOX4chr11

89135710

-
5CDS-intronENST00000524794ENST00000393282NFRKBchr11

129755330

-NOX4chr11

89135710

-
Frame-shiftENST00000524746ENST00000535633NFRKBchr11

129755330

-NOX4chr11

89135710

-
Frame-shiftENST00000524746ENST00000424319NFRKBchr11

129755330

-NOX4chr11

89135710

-
Frame-shiftENST00000524746ENST00000343727NFRKBchr11

129755330

-NOX4chr11

89135710

-
Frame-shiftENST00000524746ENST00000534731NFRKBchr11

129755330

-NOX4chr11

89135710

-
5CDS-intronENST00000524746ENST00000525196NFRKBchr11

129755330

-NOX4chr11

89135710

-
5CDS-intronENST00000524746ENST00000263317NFRKBchr11

129755330

-NOX4chr11

89135710

-
5CDS-intronENST00000524746ENST00000532825NFRKBchr11

129755330

-NOX4chr11

89135710

-
5CDS-intronENST00000524746ENST00000527956NFRKBchr11

129755330

-NOX4chr11

89135710

-
5CDS-intronENST00000524746ENST00000542487NFRKBchr11

129755330

-NOX4chr11

89135710

-
5CDS-intronENST00000524746ENST00000527626NFRKBchr11

129755330

-NOX4chr11

89135710

-
5CDS-intronENST00000524746ENST00000528341NFRKBchr11

129755330

-NOX4chr11

89135710

-
5CDS-intronENST00000524746ENST00000413594NFRKBchr11

129755330

-NOX4chr11

89135710

-
5CDS-intronENST00000524746ENST00000375979NFRKBchr11

129755330

-NOX4chr11

89135710

-
5CDS-intronENST00000524746ENST00000531342NFRKBchr11

129755330

-NOX4chr11

89135710

-
5CDS-intronENST00000524746ENST00000393282NFRKBchr11

129755330

-NOX4chr11

89135710

-
intron-3CDSENST00000526940ENST00000535633NFRKBchr11

129755330

-NOX4chr11

89135710

-
intron-3CDSENST00000526940ENST00000424319NFRKBchr11

129755330

-NOX4chr11

89135710

-
intron-3CDSENST00000526940ENST00000343727NFRKBchr11

129755330

-NOX4chr11

89135710

-
intron-3CDSENST00000526940ENST00000534731NFRKBchr11

129755330

-NOX4chr11

89135710

-
intron-intronENST00000526940ENST00000525196NFRKBchr11

129755330

-NOX4chr11

89135710

-
intron-intronENST00000526940ENST00000263317NFRKBchr11

129755330

-NOX4chr11

89135710

-
intron-intronENST00000526940ENST00000532825NFRKBchr11

129755330

-NOX4chr11

89135710

-
intron-intronENST00000526940ENST00000527956NFRKBchr11

129755330

-NOX4chr11

89135710

-
intron-intronENST00000526940ENST00000542487NFRKBchr11

129755330

-NOX4chr11

89135710

-
intron-intronENST00000526940ENST00000527626NFRKBchr11

129755330

-NOX4chr11

89135710

-
intron-intronENST00000526940ENST00000528341NFRKBchr11

129755330

-NOX4chr11

89135710

-
intron-intronENST00000526940ENST00000413594NFRKBchr11

129755330

-NOX4chr11

89135710

-
intron-intronENST00000526940ENST00000375979NFRKBchr11

129755330

-NOX4chr11

89135710

-
intron-intronENST00000526940ENST00000531342NFRKBchr11

129755330

-NOX4chr11

89135710

-
intron-intronENST00000526940ENST00000393282NFRKBchr11

129755330

-NOX4chr11

89135710

-

check buttonORFfinder result based on the fusion transcript sequence of in-frame fusion genes.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandSeq length
(transcript)
BP loci
(transcript)
Predicted start
(transcript)
Predicted stop
(transcript)
Seq length
(amino acids)

check buttonDeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandNo-coding scoreCoding score

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Fusion Genomic Features for NFRKB-NOX4


check buttonFusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints.
HgeneHchrHbpHstrandTgeneTchrTbpTstrand1-pp (fusion gene breakpoint)

check buttonDistribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page.

check buttonDistribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page.

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Fusion Protein Features for NFRKB-NOX4


check button Go to

FGviewer for the breakpoints of :-:

.
- FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels.
FGviewer

check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
NFRKB

Q6P4R8

NOX4

Q9NPH5

FUNCTION: Binds to the DNA consensus sequence 5'-GGGGAATCTCC-3'. {ECO:0000269|PubMed:18922472}.; FUNCTION: Putative regulatory component of the chromatin remodeling INO80 complex which is involved in transcriptional regulation, DNA replication and probably DNA repair. Modulates the deubiquitinase activity of UCHL5 in the INO80 complex. {ECO:0000269|PubMed:18922472}.FUNCTION: Constitutive NADPH oxidase which generates superoxide intracellularly upon formation of a complex with CYBA/p22phox. Regulates signaling cascades probably through phosphatases inhibition. May function as an oxygen sensor regulating the KCNK3/TASK-1 potassium channel and HIF1A activity. May regulate insulin signaling cascade. May play a role in apoptosis, bone resorption and lipolysaccharide-mediated activation of NFKB. May produce superoxide in the nucleus and play a role in regulating gene expression upon cell stimulation. Isoform 3 is not functional. Isoform 5 and isoform 6 display reduced activity.; FUNCTION: [Isoform 4]: Involved in redox signaling in vascular cells. Constitutively and NADPH-dependently generates reactive oxygen species (ROS). Modulates the nuclear activation of ERK1/2 and the ELK1 transcription factor, and is capable of inducing nuclear DNA damage. Displays an increased activity relative to isoform 1.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page


* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note


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Fusion Gene Sequence for NFRKB-NOX4


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones.

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Fusion Gene PPI Analysis for NFRKB-NOX4


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page.


check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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Related Drugs for NFRKB-NOX4


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.8 2021-05-08)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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Related Diseases for NFRKB-NOX4


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource
TgeneNOX4C0020538Hypertensive disease2CTD_human
TgeneNOX4C0007102Malignant tumor of colon1CTD_human
TgeneNOX4C0009375Colonic Neoplasms1CTD_human
TgeneNOX4C0018801Heart failure1CTD_human
TgeneNOX4C0018802Congestive heart failure1CTD_human
TgeneNOX4C0019193Hepatitis, Toxic1CTD_human
TgeneNOX4C0022661Kidney Failure, Chronic1CTD_human
TgeneNOX4C0023212Left-Sided Heart Failure1CTD_human
TgeneNOX4C0023893Liver Cirrhosis, Experimental1CTD_human
TgeneNOX4C0035078Kidney Failure1CTD_human
TgeneNOX4C0235527Heart Failure, Right-Sided1CTD_human
TgeneNOX4C0860207Drug-Induced Liver Disease1CTD_human
TgeneNOX4C1262760Hepatitis, Drug-Induced1CTD_human
TgeneNOX4C1565489Renal Insufficiency1CTD_human
TgeneNOX4C1959583Myocardial Failure1CTD_human
TgeneNOX4C1961112Heart Decompensation1CTD_human
TgeneNOX4C3658290Drug-Induced Acute Liver Injury1CTD_human
TgeneNOX4C4277682Chemical and Drug Induced Liver Injury1CTD_human
TgeneNOX4C4279912Chemically-Induced Liver Toxicity1CTD_human