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 | Fusion Gene Summary |
| Fusion Gene ORF analysis |
| Fusion Genomic Features |
| Fusion Protein Features |
| Fusion Gene Sequence |
| Fusion Gene PPI analysis |
| Related Drugs |
| Related Diseases |
Fusion gene:NUCKS1-CNTN2 (FusionGDB2 ID:60399) |
Fusion Gene Summary for NUCKS1-CNTN2 |
 Fusion gene summary |
| Fusion gene information | Fusion gene name: NUCKS1-CNTN2 | Fusion gene ID: 60399 | Hgene | Tgene | Gene symbol | NUCKS1 | CNTN2 | Gene ID | 64710 | 6900 |
| Gene name | nuclear casein kinase and cyclin dependent kinase substrate 1 | contactin 2 | |
| Synonyms | JC7|NUCKS | AXT|FAME5|TAG-1|TAX|TAX1 | |
| Cytomap | 1q32.1 | 1q32.1 | |
| Type of gene | protein-coding | protein-coding | |
| Description | nuclear ubiquitous casein and cyclin-dependent kinase substrate 1P1nuclear ubiquitous casein kinase and cyclin-dependent kinase substratepotential LAG1 interactor | contactin-2axonal glycoprotein TAG-1axonin-1 cell adhesion moleculecontactin 2 (axonal)contactin 2 (transiently expressed)transient axonal glycoprotein 1 | |
| Modification date | 20200313 | 20200322 | |
| UniProtAcc | . | Q02246 | |
| Ensembl transtripts involved in fusion gene | ENST00000367142, ENST00000464938, | ENST00000331830, | |
| Fusion gene scores | * DoF score | 22 X 24 X 7=3696 | 6 X 7 X 4=168 |
| # samples | 32 | 7 | |
| ** MAII score | log2(32/3696*10)=-3.52982094652869 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(7/168*10)=-1.26303440583379 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
| Context | PubMed: NUCKS1 [Title/Abstract] AND CNTN2 [Title/Abstract] AND fusion [Title/Abstract] | ||
| Most frequent breakpoint | NUCKS1(205719085)-CNTN2(205041075), # samples:2 | ||
| Anticipated loss of major functional domain due to fusion event. | |||
| * DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
| Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Partner | Gene | GO ID | GO term | PubMed ID |
| Hgene | NUCKS1 | GO:0031297 | replication fork processing | 26323318 |
| Fusion gene breakpoints across NUCKS1 (5'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
| Fusion gene breakpoints across CNTN2 (3'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
| Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| Source | Disease | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| ChimerDB4 | STAD | TCGA-BR-8590-01A | NUCKS1 | chr1 | 205719085 | - | CNTN2 | chr1 | 205041075 | + |
| ChimerDB4 | STAD | TCGA-BR-8590-01A | NUCKS1 | chr1 | 205719085 | - | CNTN2 | chr1 | 205041075 | + |
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Fusion Gene ORF analysis for NUCKS1-CNTN2 |
| Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| In-frame | ENST00000367142 | ENST00000331830 | NUCKS1 | chr1 | 205719085 | - | CNTN2 | chr1 | 205041075 | + |
| intron-3CDS | ENST00000464938 | ENST00000331830 | NUCKS1 | chr1 | 205719085 | - | CNTN2 | chr1 | 205041075 | + |
| ORFfinder result based on the fusion transcript sequence of in-frame fusion genes. |
| Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | Seq length (transcript) | BP loci (transcript) | Predicted start (transcript) | Predicted stop (transcript) | Seq length (amino acids) |
| ENST00000367142 | NUCKS1 | chr1 | 205719085 | - | ENST00000331830 | CNTN2 | chr1 | 205041075 | + | 5633 | 320 | 260 | 898 | 212 |
| DeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated. |
| Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | No-coding score | Coding score |
| ENST00000367142 | ENST00000331830 | NUCKS1 | chr1 | 205719085 | - | CNTN2 | chr1 | 205041075 | + | 0.033749923 | 0.96625006 |
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Fusion Genomic Features for NUCKS1-CNTN2 |
| FusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints. |
| Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | 1-p | p (fusion gene breakpoint) |
| NUCKS1 | chr1 | 205719084 | - | CNTN2 | chr1 | 205041074 | + | 0.000653192 | 0.9993468 |
| NUCKS1 | chr1 | 205719084 | - | CNTN2 | chr1 | 205041074 | + | 0.000653192 | 0.9993468 |
| Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page. |
| Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page. |
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Fusion Protein Features for NUCKS1-CNTN2 |
| Go to FGviewer for the breakpoints of chr1:205719085-chr1:205041075 - FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels. |
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| Main function of each fusion partner protein. (from UniProt) |
| Hgene | Tgene |
| . | CNTN2 |
| FUNCTION: Might normally function as a transcriptional repressor. EWS-fusion-proteins (EFPS) may play a role in the tumorigenic process. They may disturb gene expression by mimicking, or interfering with the normal function of CTD-POLII within the transcription initiation complex. They may also contribute to an aberrant activation of the fusion protein target genes. | FUNCTION: In conjunction with another transmembrane protein, CNTNAP2, contributes to the organization of axonal domains at nodes of Ranvier by maintaining voltage-gated potassium channels at the juxtaparanodal region. May be involved in cell adhesion. {ECO:0000269|PubMed:23518707}. |
| Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at * Minus value of BPloci means that the break pointn is located before the CDS. |
| - In-frame and retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| Tgene | CNTN2 | chr1:205719085 | chr1:205041075 | ENST00000331830 | 18 | 23 | 915_1006 | 848.0 | 1041.0 | Domain | Fibronectin type-III 4 |
| - In-frame and not-retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| Hgene | NUCKS1 | chr1:205719085 | chr1:205041075 | ENST00000367142 | - | 1 | 7 | 140_145 | 5.666666666666667 | 244.0 | Compositional bias | Note=Poly-Asp |
| Hgene | NUCKS1 | chr1:205719085 | chr1:205041075 | ENST00000367142 | - | 1 | 7 | 150_206 | 5.666666666666667 | 244.0 | Compositional bias | Note=Lys-rich |
| Tgene | CNTN2 | chr1:205719085 | chr1:205041075 | ENST00000331830 | 18 | 23 | 606_612 | 848.0 | 1041.0 | Compositional bias | Note=Gly/Pro-rich | |
| Tgene | CNTN2 | chr1:205719085 | chr1:205041075 | ENST00000331830 | 18 | 23 | 133_222 | 848.0 | 1041.0 | Domain | Note=Ig-like C2-type 2 | |
| Tgene | CNTN2 | chr1:205719085 | chr1:205041075 | ENST00000331830 | 18 | 23 | 239_322 | 848.0 | 1041.0 | Domain | Note=Ig-like C2-type 3 | |
| Tgene | CNTN2 | chr1:205719085 | chr1:205041075 | ENST00000331830 | 18 | 23 | 327_411 | 848.0 | 1041.0 | Domain | Note=Ig-like C2-type 4 | |
| Tgene | CNTN2 | chr1:205719085 | chr1:205041075 | ENST00000331830 | 18 | 23 | 417_504 | 848.0 | 1041.0 | Domain | Note=Ig-like C2-type 5 | |
| Tgene | CNTN2 | chr1:205719085 | chr1:205041075 | ENST00000331830 | 18 | 23 | 43_128 | 848.0 | 1041.0 | Domain | Note=Ig-like C2-type 1 | |
| Tgene | CNTN2 | chr1:205719085 | chr1:205041075 | ENST00000331830 | 18 | 23 | 509_603 | 848.0 | 1041.0 | Domain | Note=Ig-like C2-type 6 | |
| Tgene | CNTN2 | chr1:205719085 | chr1:205041075 | ENST00000331830 | 18 | 23 | 610_708 | 848.0 | 1041.0 | Domain | Fibronectin type-III 1 | |
| Tgene | CNTN2 | chr1:205719085 | chr1:205041075 | ENST00000331830 | 18 | 23 | 713_810 | 848.0 | 1041.0 | Domain | Fibronectin type-III 2 | |
| Tgene | CNTN2 | chr1:205719085 | chr1:205041075 | ENST00000331830 | 18 | 23 | 815_910 | 848.0 | 1041.0 | Domain | Fibronectin type-III 3 | |
| Tgene | CNTN2 | chr1:205719085 | chr1:205041075 | ENST00000331830 | 18 | 23 | 794_796 | 848.0 | 1041.0 | Motif | Cell attachment site |
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Fusion Gene Sequence for NUCKS1-CNTN2 |
| For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones. |
| >In-frame_ENST00000367142_ENST00000331830_TCGA-BR-8590-01A_NUCKS1_chr1_205719085_-_CNTN2_chr1_205041075_length(transcript)=5633nt_BP=320nt GTCTCCAATGAGCAGGCGTGTTGGGGAGGAGCGCACAAACCCTAGTGGGTTTGGTTGCACGGCGGCTTTGGCGCATTTTCGGCTGGTTTG ATTCATCCATTTTGAAGAGACGGGGGAGCGGGGGGCTCGTCTGTTCCAGGAGCCCTGAACCAAAGAGCAGCGGAGTTTGAGAAGCCAGCA GCTCGGGGTTCGGCAGCAGCGGTCCCATCGGCTGAAGTTCGGGGGGGGTGGGGCGCCGAGCGCGCGGGGTGGGGGGGGTCCTGGTCTTTG GCTTCTCGACTCGGTCCTGTTTCGACAGCGAACATGTCGCGGCCTGTCAGATCCGCTACTGGAAAGCTGGGGACAAAGAAGCAGCTGCGG ACCGAGTGAGGACAGCAGGGCTGGACACCAGTGCCCGAGTCAGCGGCCTGCATCCCAACACCAAGTACCATGTGACCGTGAGGGCCTACA ACCGGGCTGGCACTGGGCCTGCCAGCCCTTCTGCCAACGCCACGACCATGAAGCCCCCTCCGCGGCGACCTCCTGGCAACATCTCCTGGA CTTTCTCAAGCTCTAGTCTTAGCATTAAGTGGGACCCTGTGGTCCCTTTCCGAAATGAGTCTGCAGTCACCGGCTATAAGATGCTGTACC AGAATGACTTACACCTGACTCCCACGCTCCACCTCACCGGCAAGAACTGGATAGAAATCCCAGTGCCTGAAGACATTGGCCATGCCCTGG TACAAATTCGGACCACAGGGCCCGGAGGGGATGGGATCCCTGCAGAAGTCCACATCGTGAGGAATGGAGGCACAAGCATGATGGTGGAGA ACATGGCAGTCCGCCCAGCACCACACCCTGGCACCGTCATTTCCCACTCCGTGGCGATGCTGATCCTCATAGGCTCCCTGGAGCTCTGAT CCTGGAACCCCTCCCTCTGCGCCGCAGCTGGACGCCACCTCCGACGGACACAGCCAGCCCCTTCCTGCTGCCAAGGTGGCCTGACACTGT GCCAGAGAGTGGCTGGTTTTAAATACCTACTTTAAACAGTGCCCTTTTTGTAGGAGGTAGGATATTTTATATTCTGCCGCAGGATAGAAC CCACGCAAGGATTTTCTTTAAATTGAGAGGCACCAGGCAGTAACTTCCATGATGACACTGACGCCTATACCTGAGCTCTAGGCTGCCTGG AGGGAAGGAACAGGCCCATGGGAAGAAGGGGGTTTTAAAAACATGTCTTCAACTCAGCAGAGATGGCCCTCTGGGACCCTATACGGACTC CGCCACTTGAGAGCAGTCCTAGGCCCGGCAGGAACACCAGACATGAACAGGTTGAAGAACTGGAGCGAAGTGCACACCTCACCATCCTTC AGTCTAAGGAAGAAGGGCAAGCCCTGGGACCAAGAGCTCTCCCGCCTTCTCCCTCGAGCAGCAGCAAGGACCCTGACGCTGTCCCCGATA ACTCCCTAGGGGCTCCTGCCTGCCCAAGCGGCTGAGAACCAGCGCCCCGATGCCTGAGGCTGGGAGCCTGAGCCCCTTCAGCTTTGAGGG GGGTGATACTCCAGGCTGTTTGGGGTGGGAGCCAAAAAGAGTTGAGAGGCCAGGGCCCTTGGTGGAAAGGGGCACCAGCCTTGGTCTGAG ATAGTCACAACCCAGGTGACGATGCCCTCTCAGCCAACACTGCCAACCTGACCCTGTCATCCCGATTGACAGCGCCACTTCAGGTGGCTG GGTGACTAAAGGGCTTGTCTTGGTGGGGTCTCCCACCCCTCCAAGACCCATTCTGCACAGTCCCTCCAGGGTTTGGGCAGGAGATGGCCA ATCATGCGCCCACCTCTCCAGTGCTGCCTGCAGTCAGCTCGGCCTCCCCGACCTGCAGCCCCAGACTCTGCTCTCCCAGCACTGACTCAC TCCTGCCTGGGAGGGGAATGCAGCATTCATGCTGTGTGTCCTGGTATTGGGAGGTTTCTGGGAAGGGCAGAGGATAAATGTGGCCCTGCC TGCTCCCAGGTATACCTAGGACCACCTGGCCAGATCCGCTCCCAGACGGCCTTGGACTGCTTGCATTTCCCCGGAGAAAAAGGGGTTAAT AAATGGGCCATCCTTTCCTGAGCTCTGGGTATACTACCAGTCACAGAACGTCAGAGCTGGAAGAAGCCTTAGAGCTCAACTTCTTCAAGC CCCTCACTTTACAGATGAGGAAATGGAGGTGGTCCAGAGAGGGTCTGGGATTCCCAAGGTCACACAGCCCAGAAGAGATGGGGCTGGGTT AAGAACTCGAGTCTTCCACCTTTCTGTTCAAGGCTGTTTGTCTACCCAGAGGAAGGAGGCACTGCTGAATGGCTATGGCCTGGCTAAGAA GGTGATTAGTCAGTAGGGTGTGAAAATTCTACTTCAAGGGGTTCGGATTGGTGATCATGGGGATTGGCATGGCTGGGTTCCCGTCCAAGG TGTGGGCAGAGCTTCTACCAAACTTCAACATGGAGGGCTGACTTGAAGCTCCCTGTCCCCCTCACTCTTGCCCCAAGAAAAGAGGCCAAA GCAAGAGCAGATTCCCTAGGCAAGAGCAGCAGCACAACTAGGAAACCCCAAAGCCCATGCTCCGACAGGTGGCCCTTCACAGGGGGCAGC GGGACAGGCATCTTGAAGGGCATATGTCCTCGGAAGCTCCGAGCCTGTTTTCTGTAGTTTATAGTTAGAGCTCTATTTTGTTATGGTTTT TTAAACTTTTAAGTCCTGCTCTATTTTCCTGGGCAGGTTTATGTTGATGTTTACCCACTACAATTTTTTAAAAATATAAGCTCACATGCC TTTTCCCTGCCACAGCCAAACCCCCACTGCACCCTACCCACCCACCCCTAGCCCAGGTCAGCTTTCCTGGAGCTGGCTAATGAAAGCCTC CTCACCTCTTCCCAACCCTTACAAGCAAGGGTGCTAGGGGCTCAGCTATACGACCATTCTCCCTGACAGGGAGTCCAAACTTGGCCTAGC ATCCCTCCTGGCCCCCCTCTGGCCACGACTTGGCCTGTGCCTGGTTCTCTATCAGAAAGGGGATGCTGAACAAAACCTCCTTCCAAGTTT TATCCAATTCGTTCCTCATTGCCTCGGGCTGCGTCAGGGGAAGCAGGGGACAGGTGTCCAGTTGCTGGGCCGAGGGAGGAGCTGGTTTGG CATAGGACCTAACCAGTGAAGCTAGAGGCTACAGCCACTAAACTTGCTTCAGGCCAACGATAGTTACTCACAAGTAAGTACCTTAATGCT AATGAGGTCCACTAAAAAGGGGAGGAAGGCAGACCTCCTGGGAGACCCACGAAGGGTTTTTAGCCAGGGAAAACTGAGCCCCAGGAAAAC CTAACCACTGGGCAGGCAGAATTTGTTTGAGGGATAGAACGACAACAAAATAAATGTTCCTGCAGCCTGAGATTTCAGGTAGAGTACTGA CTAAGGTTTAATAAGACAATAGGTGACCTGAGGACATGCAAGCTTGTAAAATGCAACAGCCTCCTGCTAGAGTGACTTGTACATGAGCTT GCTTGCAGAAGACTAGATTAGATGTTTCTCAGGATCCCCTCCTGCGCAGGGGTTCTCTGATTTTCGTGTTCTCTGCCCAGATGGGCTGGG GGAGTTGAGAGTGTGCTTATTTTCACTGCGATCATGAGACCACAGTTCTGGGTTATCTCCTCTCATACATCAAGCCCCAGAGGAGGCGGC AAGAGGAACAGCCACAAACAAGTACTTTACCCCACAGCTTAGTGGCCAGTAAACACCCTGGGGACTAGGAAAAGGAACCAACTGTAGGCA CCTCTCCAGGGCCTAGGGAGACAAGTGTCCTCTCTTCTGCATACATTTGGGCTCCCCTTACAGAGCCCTTTGCCCTGGCTCTCTGGTCCT TGTTGCTCTAACAGTCCAGATGTACACCCAGCCTCAGGGGGAAGGCAGCTCTCTCCAGACAGAGTCTCAGGGCCCAGCAAGGTCAGGTTA TCTGCTTTCATTCAGGGCAACAAATGATACAAATGGTGCCAGGGAGTGGCAAGGCCATGGGGGTAGGTGGGGGTGTCTTTTTCTTTTCAT AAAGTAACAACAGACGAGACTGAGGTTAAACATCAGAAAAAAACCTCTGGAATGACCTTCCTCATTCCAGGAGGCCCTGGAATAAGGAAG AGGCTTCTTTCTGAGGGAGCTTTGAGGAATTTTGACAGCTGTTGACATGGGATTTGGGAAAGGTGAAGCTGTGACTGGAGGGGCAGGAGA TGGTCCAAGTGTCCATCCAGAGATGAGACTCTTAGAATCAAAGTGTTCAGCCCAGGAAGTCTTGGAGATCCCACCTTCTGTGGCCCTGCA CCTTATGGGAAGCCATTAAGGGGGCTCATCTAGGAATTCTGGTTACAGCCCAGTGCTCATCCCAGCGTATGCTGCCTCTTTAGGGCAGCC CCAAGGGCCAGCCAGCCTGTACTCTGGGCAAGAGCCCAAAATGGCTAGGAATGTTTGACTCCCTTAATCTCTTCCCCAGCTACAGAGGAA TCTTTTCTCTGCCTGGTCTCAGAATGGGACTGCCAACTGGCTCATTGGTGGGAGACACAGTATCCTCAAACCTGTGGCCACTGGCATGAC AGTGGTGCTCTGTCTCCCTGGGTGACACCCACCCTAGGCTTCCTCCTGGATGTGATGGGGATTGCCAGAGAGGCTCTTAGCATAAAAGGC ATTAGGTGGGCATTTTTCTGTGTGCCCCCAAAAAGCTCCATGGAAACAGGCACCTGGTAGCTGCGGAACACCCGTGGACTTGTGTATATG GTCATAGGCTTTGGGAAGACAGGACGTAAAGGAAAATGAGAGAAACAAAATGGGTCAGATAGCTTTGGCCACAGCCCCAGGCAGCCTTTG GGGCCTATGACACTTAGTGCCCTTAGATGGGATACATCTTGCCTCGGCCCCAAGACTCCTCCAACTTACCCGTCCCATCCAGGGCCTGCA CAGCTTAGAGAGGCTCACAGCTTGGCAAATGCTAGGGCTTCATCAGACCACTGACTTGACTCAGTGTTTGTTAAAATGGAACCACTCCCG TTGGCCTACTGTTTCTCTCCTGTACTTCTTGTAATGATAGTTATTTATTGACTCTGGTAGCAGGCAGTTCTTAAATAAAGATGGTTTCTC AACCTGTTGGGGAAGCTGGCACGAGCTGTGGGTGTTATCATCAGGCTAAAGCATACCTCCTTGTCCTGTTCTTCACTCCAGAGGCTTTTA TCCAAGAATTTCTTTACCCCCCACACAGTGAAATATAAGTAAGTTACAACATACAGTCTATATTGCTTCATCCAGTCCCAGGAGGAGGGA AAAATTAGGCCAAGATCTTAAGGCAGGTCCAAGCAGAGCACAGGCAGGCATTTGGCTAGAATCAGTTGGCTTTACCTAATACAGTGGCAG TAAACAATGCTTATGTGATGGTACTGCTTCAAGGTGGCCTGATTTTTAAGACATCTTTGAGGTGTTGACTCAGTGGTCCCAAAGGAAAGT CTCCCTGCAGATATATTAATGATACCCAACTGGTGAGAACGAGGCTGCTGCCTCTACTCTTGGTTCACAGCAGCCACAAGGGTGTGAATT >In-frame_ENST00000367142_ENST00000331830_TCGA-BR-8590-01A_NUCKS1_chr1_205719085_-_CNTN2_chr1_205041075_length(amino acids)=212AA_start in transcript=260_stop in transcript=898 MVFGFSTRSCFDSEHVAACQIRYWKAGDKEAAADRVRTAGLDTSARVSGLHPNTKYHVTVRAYNRAGTGPASPSANATTMKPPPRRPPGN ISWTFSSSSLSIKWDPVVPFRNESAVTGYKMLYQNDLHLTPTLHLTGKNWIEIPVPEDIGHALVQIRTTGPGGDGIPAEVHIVRNGGTSM -------------------------------------------------------------- |
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Fusion Gene PPI Analysis for NUCKS1-CNTN2 |
| Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in |
| Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
| Hgene | Hgene's interactors | Tgene | Tgene's interactors |
| - Retained PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
| - Lost PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
| - Retained PPIs, but lost function due to frame-shift fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Related Drugs for NUCKS1-CNTN2 |
| Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.8 2021-05-08) |
| Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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Related Diseases for NUCKS1-CNTN2 |
| Diseases associated with fusion partners. (DisGeNet 4.0) |
| Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
| Hgene | NUCKS1 | C0004238 | Atrial Fibrillation | 1 | CTD_human |
| Hgene | NUCKS1 | C0235480 | Paroxysmal atrial fibrillation | 1 | CTD_human |
| Hgene | NUCKS1 | C2585653 | Persistent atrial fibrillation | 1 | CTD_human |
| Hgene | NUCKS1 | C3468561 | familial atrial fibrillation | 1 | CTD_human |
| Tgene | CNTN2 | C1832841 | EPILEPSY, FAMILIAL ADULT MYOCLONIC, 1 | 1 | ORPHANET |
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