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Center for Computational Systems Medicine
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Fusion Gene Summary

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Fusion Gene ORF analysis

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Fusion Genomic Features

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Fusion Protein Features

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Fusion Gene Sequence

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Fusion Gene PPI analysis

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Related Drugs

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Related Diseases

Fusion gene:NXF1-C11orf48 (FusionGDB2 ID:60807)

Fusion Gene Summary for NXF1-C11orf48

check button Fusion gene summary
Fusion gene informationFusion gene name: NXF1-C11orf48
Fusion gene ID: 60807
HgeneTgene
Gene symbol

NXF1

C11orf48

Gene ID

10482

102288414

Gene namenuclear RNA export factor 1chromosome 11 open reading frame 98
SynonymsMEX67|TAPC11orf48
Cytomap

11q12.3

11q12.3

Type of geneprotein-codingprotein-coding
Descriptionnuclear RNA export factor 1mRNA export factor TAPtip associating proteintip-associated proteinuncharacterized protein C11orf98
Modification date2020031320200313
UniProtAcc..
Ensembl transtripts involved in fusion geneENST00000531709, ENST00000294172, 
ENST00000532297, ENST00000533048, 
ENST00000531131, ENST00000439713, 
ENST00000524958, ENST00000354588, 
ENST00000431002, ENST00000532208, 
ENST00000525675, 
Fusion gene scores* DoF score10 X 13 X 7=9106 X 3 X 6=108
# samples 129
** MAII scorelog2(12/910*10)=-2.92283213947754
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0		log2(9/108*10)=-0.263034405833794
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
Context

PubMed: NXF1 [Title/Abstract] AND C11orf48 [Title/Abstract] AND fusion [Title/Abstract]

Most frequent breakpointNXF1(62572800)-C11orf48(62430805), # samples:1
NXF1(62572801)-C11orf48(62430805), # samples:1
Anticipated loss of major functional domain due to fusion event.NXF1-C11orf48 seems lost the major protein functional domain in Hgene partner, which is a essential gene due to the frame-shifted ORF.
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
HgeneNXF1

GO:0006406

mRNA export from nucleus

19165146|28984244


check buttonFusion gene breakpoints across NXF1 (5'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.

check buttonFusion gene breakpoints across C11orf48 (3'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.

check button Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0)
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
SourceDiseaseSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
ChimerDB4UVMTCGA-VD-AA8SNXF1chr11

62572800

-C11orf48chr11

62430805

-
ChimerDB4UVMTCGA-VD-AA8SNXF1chr11

62572801

-C11orf48chr11

62430805

-


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Fusion Gene ORF analysis for NXF1-C11orf48

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
Frame-shiftENST00000531709ENST00000524958NXF1chr11

62572800

-C11orf48chr11

62430805

-
In-frameENST00000531709ENST00000354588NXF1chr11

62572800

-C11orf48chr11

62430805

-
In-frameENST00000531709ENST00000431002NXF1chr11

62572800

-C11orf48chr11

62430805

-
In-frameENST00000531709ENST00000532208NXF1chr11

62572800

-C11orf48chr11

62430805

-
Frame-shiftENST00000531709ENST00000525675NXF1chr11

62572800

-C11orf48chr11

62430805

-
Frame-shiftENST00000294172ENST00000524958NXF1chr11

62572800

-C11orf48chr11

62430805

-
In-frameENST00000294172ENST00000354588NXF1chr11

62572800

-C11orf48chr11

62430805

-
In-frameENST00000294172ENST00000431002NXF1chr11

62572800

-C11orf48chr11

62430805

-
In-frameENST00000294172ENST00000532208NXF1chr11

62572800

-C11orf48chr11

62430805

-
Frame-shiftENST00000294172ENST00000525675NXF1chr11

62572800

-C11orf48chr11

62430805

-
Frame-shiftENST00000532297ENST00000524958NXF1chr11

62572800

-C11orf48chr11

62430805

-
In-frameENST00000532297ENST00000354588NXF1chr11

62572800

-C11orf48chr11

62430805

-
In-frameENST00000532297ENST00000431002NXF1chr11

62572800

-C11orf48chr11

62430805

-
In-frameENST00000532297ENST00000532208NXF1chr11

62572800

-C11orf48chr11

62430805

-
Frame-shiftENST00000532297ENST00000525675NXF1chr11

62572800

-C11orf48chr11

62430805

-
intron-3CDSENST00000533048ENST00000524958NXF1chr11

62572800

-C11orf48chr11

62430805

-
intron-3CDSENST00000533048ENST00000354588NXF1chr11

62572800

-C11orf48chr11

62430805

-
intron-3CDSENST00000533048ENST00000431002NXF1chr11

62572800

-C11orf48chr11

62430805

-
intron-3CDSENST00000533048ENST00000532208NXF1chr11

62572800

-C11orf48chr11

62430805

-
intron-3CDSENST00000533048ENST00000525675NXF1chr11

62572800

-C11orf48chr11

62430805

-
5UTR-3CDSENST00000531131ENST00000524958NXF1chr11

62572800

-C11orf48chr11

62430805

-
5UTR-3CDSENST00000531131ENST00000354588NXF1chr11

62572800

-C11orf48chr11

62430805

-
5UTR-3CDSENST00000531131ENST00000431002NXF1chr11

62572800

-C11orf48chr11

62430805

-
5UTR-3CDSENST00000531131ENST00000532208NXF1chr11

62572800

-C11orf48chr11

62430805

-
5UTR-3CDSENST00000531131ENST00000525675NXF1chr11

62572800

-C11orf48chr11

62430805

-
Frame-shiftENST00000439713ENST00000524958NXF1chr11

62572800

-C11orf48chr11

62430805

-
In-frameENST00000439713ENST00000354588NXF1chr11

62572800

-C11orf48chr11

62430805

-
In-frameENST00000439713ENST00000431002NXF1chr11

62572800

-C11orf48chr11

62430805

-
In-frameENST00000439713ENST00000532208NXF1chr11

62572800

-C11orf48chr11

62430805

-
Frame-shiftENST00000439713ENST00000525675NXF1chr11

62572800

-C11orf48chr11

62430805

-
Frame-shiftENST00000531709ENST00000524958NXF1chr11

62572801

-C11orf48chr11

62430805

-
In-frameENST00000531709ENST00000354588NXF1chr11

62572801

-C11orf48chr11

62430805

-
In-frameENST00000531709ENST00000431002NXF1chr11

62572801

-C11orf48chr11

62430805

-
In-frameENST00000531709ENST00000532208NXF1chr11

62572801

-C11orf48chr11

62430805

-
Frame-shiftENST00000531709ENST00000525675NXF1chr11

62572801

-C11orf48chr11

62430805

-
Frame-shiftENST00000294172ENST00000524958NXF1chr11

62572801

-C11orf48chr11

62430805

-
In-frameENST00000294172ENST00000354588NXF1chr11

62572801

-C11orf48chr11

62430805

-
In-frameENST00000294172ENST00000431002NXF1chr11

62572801

-C11orf48chr11

62430805

-
In-frameENST00000294172ENST00000532208NXF1chr11

62572801

-C11orf48chr11

62430805

-
Frame-shiftENST00000294172ENST00000525675NXF1chr11

62572801

-C11orf48chr11

62430805

-
Frame-shiftENST00000532297ENST00000524958NXF1chr11

62572801

-C11orf48chr11

62430805

-
In-frameENST00000532297ENST00000354588NXF1chr11

62572801

-C11orf48chr11

62430805

-
In-frameENST00000532297ENST00000431002NXF1chr11

62572801

-C11orf48chr11

62430805

-
In-frameENST00000532297ENST00000532208NXF1chr11

62572801

-C11orf48chr11

62430805

-
Frame-shiftENST00000532297ENST00000525675NXF1chr11

62572801

-C11orf48chr11

62430805

-
intron-3CDSENST00000533048ENST00000524958NXF1chr11

62572801

-C11orf48chr11

62430805

-
intron-3CDSENST00000533048ENST00000354588NXF1chr11

62572801

-C11orf48chr11

62430805

-
intron-3CDSENST00000533048ENST00000431002NXF1chr11

62572801

-C11orf48chr11

62430805

-
intron-3CDSENST00000533048ENST00000532208NXF1chr11

62572801

-C11orf48chr11

62430805

-
intron-3CDSENST00000533048ENST00000525675NXF1chr11

62572801

-C11orf48chr11

62430805

-
5UTR-3CDSENST00000531131ENST00000524958NXF1chr11

62572801

-C11orf48chr11

62430805

-
5UTR-3CDSENST00000531131ENST00000354588NXF1chr11

62572801

-C11orf48chr11

62430805

-
5UTR-3CDSENST00000531131ENST00000431002NXF1chr11

62572801

-C11orf48chr11

62430805

-
5UTR-3CDSENST00000531131ENST00000532208NXF1chr11

62572801

-C11orf48chr11

62430805

-
5UTR-3CDSENST00000531131ENST00000525675NXF1chr11

62572801

-C11orf48chr11

62430805

-
Frame-shiftENST00000439713ENST00000524958NXF1chr11

62572801

-C11orf48chr11

62430805

-
In-frameENST00000439713ENST00000354588NXF1chr11

62572801

-C11orf48chr11

62430805

-
In-frameENST00000439713ENST00000431002NXF1chr11

62572801

-C11orf48chr11

62430805

-
In-frameENST00000439713ENST00000532208NXF1chr11

62572801

-C11orf48chr11

62430805

-
Frame-shiftENST00000439713ENST00000525675NXF1chr11

62572801

-C11orf48chr11

62430805

-

check buttonORFfinder result based on the fusion transcript sequence of in-frame fusion genes.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandSeq length
(transcript)		BP loci
(transcript)		Predicted start
(transcript)		Predicted stop
(transcript)		Seq length
(amino acids)
ENST00000531709NXF1chr1162572800-ENST00000354588C11orf48chr1162430805-58514210734980
ENST00000531709NXF1chr1162572800-ENST00000431002C11orf48chr1162430805-58214210734980
ENST00000531709NXF1chr1162572800-ENST00000532208C11orf48chr1162430805-55214210734980
ENST00000294172NXF1chr1162572800-ENST00000354588C11orf48chr1162430805-60716412937180
ENST00000294172NXF1chr1162572800-ENST00000431002C11orf48chr1162430805-60416412937180
ENST00000294172NXF1chr1162572800-ENST00000532208C11orf48chr1162430805-57416412937180
ENST00000532297NXF1chr1162572800-ENST00000354588C11orf48chr1162430805-1101658216590124
ENST00000532297NXF1chr1162572800-ENST00000431002C11orf48chr1162430805-1098658216590124
ENST00000532297NXF1chr1162572800-ENST00000532208C11orf48chr1162430805-1068658216590124
ENST00000439713NXF1chr1162572800-ENST00000354588C11orf48chr1162430805-5441016630880
ENST00000439713NXF1chr1162572800-ENST00000431002C11orf48chr1162430805-5411016630880
ENST00000439713NXF1chr1162572800-ENST00000532208C11orf48chr1162430805-5111016630880
ENST00000531709NXF1chr1162572801-ENST00000354588C11orf48chr1162430805-58514210734980
ENST00000531709NXF1chr1162572801-ENST00000431002C11orf48chr1162430805-58214210734980
ENST00000531709NXF1chr1162572801-ENST00000532208C11orf48chr1162430805-55214210734980
ENST00000294172NXF1chr1162572801-ENST00000354588C11orf48chr1162430805-60716412937180
ENST00000294172NXF1chr1162572801-ENST00000431002C11orf48chr1162430805-60416412937180
ENST00000294172NXF1chr1162572801-ENST00000532208C11orf48chr1162430805-57416412937180
ENST00000532297NXF1chr1162572801-ENST00000354588C11orf48chr1162430805-1101658216590124
ENST00000532297NXF1chr1162572801-ENST00000431002C11orf48chr1162430805-1098658216590124
ENST00000532297NXF1chr1162572801-ENST00000532208C11orf48chr1162430805-1068658216590124
ENST00000439713NXF1chr1162572801-ENST00000354588C11orf48chr1162430805-5441016630880
ENST00000439713NXF1chr1162572801-ENST00000431002C11orf48chr1162430805-5411016630880
ENST00000439713NXF1chr1162572801-ENST00000532208C11orf48chr1162430805-5111016630880

check buttonDeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandNo-coding scoreCoding score
ENST00000531709ENST00000354588NXF1chr1162572800-C11orf48chr1162430805-0.203067110.7969329
ENST00000531709ENST00000431002NXF1chr1162572800-C11orf48chr1162430805-0.18795440.8120456
ENST00000531709ENST00000532208NXF1chr1162572800-C11orf48chr1162430805-0.21916730.78083265
ENST00000294172ENST00000354588NXF1chr1162572800-C11orf48chr1162430805-0.27575530.7242447
ENST00000294172ENST00000431002NXF1chr1162572800-C11orf48chr1162430805-0.26262380.7373762
ENST00000294172ENST00000532208NXF1chr1162572800-C11orf48chr1162430805-0.226808320.77319163
ENST00000532297ENST00000354588NXF1chr1162572800-C11orf48chr1162430805-0.433561350.5664387
ENST00000532297ENST00000431002NXF1chr1162572800-C11orf48chr1162430805-0.45182490.5481751
ENST00000532297ENST00000532208NXF1chr1162572800-C11orf48chr1162430805-0.400223280.59977674
ENST00000439713ENST00000354588NXF1chr1162572800-C11orf48chr1162430805-0.303281520.69671845
ENST00000439713ENST00000431002NXF1chr1162572800-C11orf48chr1162430805-0.309060130.6909399
ENST00000439713ENST00000532208NXF1chr1162572800-C11orf48chr1162430805-0.36639060.6336094
ENST00000531709ENST00000354588NXF1chr1162572801-C11orf48chr1162430805-0.203067110.7969329
ENST00000531709ENST00000431002NXF1chr1162572801-C11orf48chr1162430805-0.18795440.8120456
ENST00000531709ENST00000532208NXF1chr1162572801-C11orf48chr1162430805-0.21916730.78083265
ENST00000294172ENST00000354588NXF1chr1162572801-C11orf48chr1162430805-0.27575530.7242447
ENST00000294172ENST00000431002NXF1chr1162572801-C11orf48chr1162430805-0.26262380.7373762
ENST00000294172ENST00000532208NXF1chr1162572801-C11orf48chr1162430805-0.226808320.77319163
ENST00000532297ENST00000354588NXF1chr1162572801-C11orf48chr1162430805-0.433561350.5664387
ENST00000532297ENST00000431002NXF1chr1162572801-C11orf48chr1162430805-0.45182490.5481751
ENST00000532297ENST00000532208NXF1chr1162572801-C11orf48chr1162430805-0.400223280.59977674
ENST00000439713ENST00000354588NXF1chr1162572801-C11orf48chr1162430805-0.303281520.69671845
ENST00000439713ENST00000431002NXF1chr1162572801-C11orf48chr1162430805-0.309060130.6909399
ENST00000439713ENST00000532208NXF1chr1162572801-C11orf48chr1162430805-0.36639060.6336094

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Fusion Genomic Features for NXF1-C11orf48


check buttonFusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints.
HgeneHchrHbpHstrandTgeneTchrTbpTstrand1-pp (fusion gene breakpoint)

check buttonDistribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page.

check buttonDistribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page.

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Fusion Protein Features for NXF1-C11orf48


check button Go to

FGviewer for the breakpoints of chr11:62572800-chr11:62430805

.
- FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels.
FGviewer

check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
..
FUNCTION: Might normally function as a transcriptional repressor. EWS-fusion-proteins (EFPS) may play a role in the tumorigenic process. They may disturb gene expression by mimicking, or interfering with the normal function of CTD-POLII within the transcription initiation complex. They may also contribute to an aberrant activation of the fusion protein target genes.FUNCTION: Might normally function as a transcriptional repressor. EWS-fusion-proteins (EFPS) may play a role in the tumorigenic process. They may disturb gene expression by mimicking, or interfering with the normal function of CTD-POLII within the transcription initiation complex. They may also contribute to an aberrant activation of the fusion protein target genes.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page


* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
HgeneNXF1chr11:62572800chr11:62430805ENST00000294172-121551_5619.333333333333334620.0Compositional biasNote=Pro-rich
HgeneNXF1chr11:62572800chr11:62430805ENST00000439713-110551_5619.333333333333334357.0Compositional biasNote=Pro-rich
HgeneNXF1chr11:62572800chr11:62430805ENST00000531709-120551_5619.333333333333334380.6666666666667Compositional biasNote=Pro-rich
HgeneNXF1chr11:62572800chr11:62430805ENST00000532297-222551_5619.333333333333334620.0Compositional biasNote=Pro-rich
HgeneNXF1chr11:62572801chr11:62430805ENST00000294172-121551_5619.333333333333334620.0Compositional biasNote=Pro-rich
HgeneNXF1chr11:62572801chr11:62430805ENST00000439713-110551_5619.333333333333334357.0Compositional biasNote=Pro-rich
HgeneNXF1chr11:62572801chr11:62430805ENST00000531709-120551_5619.333333333333334380.6666666666667Compositional biasNote=Pro-rich
HgeneNXF1chr11:62572801chr11:62430805ENST00000532297-222551_5619.333333333333334620.0Compositional biasNote=Pro-rich
HgeneNXF1chr11:62572800chr11:62430805ENST00000294172-121119_1989.333333333333334620.0DomainNote=RRM
HgeneNXF1chr11:62572800chr11:62430805ENST00000294172-121386_5369.333333333333334620.0DomainNTF2
HgeneNXF1chr11:62572800chr11:62430805ENST00000294172-121565_6199.333333333333334620.0DomainTAP-C
HgeneNXF1chr11:62572800chr11:62430805ENST00000439713-110119_1989.333333333333334357.0DomainNote=RRM
HgeneNXF1chr11:62572800chr11:62430805ENST00000439713-110386_5369.333333333333334357.0DomainNTF2
HgeneNXF1chr11:62572800chr11:62430805ENST00000439713-110565_6199.333333333333334357.0DomainTAP-C
HgeneNXF1chr11:62572800chr11:62430805ENST00000531709-120119_1989.333333333333334380.6666666666667DomainNote=RRM
HgeneNXF1chr11:62572800chr11:62430805ENST00000531709-120386_5369.333333333333334380.6666666666667DomainNTF2
HgeneNXF1chr11:62572800chr11:62430805ENST00000531709-120565_6199.333333333333334380.6666666666667DomainTAP-C
HgeneNXF1chr11:62572800chr11:62430805ENST00000532297-222119_1989.333333333333334620.0DomainNote=RRM
HgeneNXF1chr11:62572800chr11:62430805ENST00000532297-222386_5369.333333333333334620.0DomainNTF2
HgeneNXF1chr11:62572800chr11:62430805ENST00000532297-222565_6199.333333333333334620.0DomainTAP-C
HgeneNXF1chr11:62572801chr11:62430805ENST00000294172-121119_1989.333333333333334620.0DomainNote=RRM
HgeneNXF1chr11:62572801chr11:62430805ENST00000294172-121386_5369.333333333333334620.0DomainNTF2
HgeneNXF1chr11:62572801chr11:62430805ENST00000294172-121565_6199.333333333333334620.0DomainTAP-C
HgeneNXF1chr11:62572801chr11:62430805ENST00000439713-110119_1989.333333333333334357.0DomainNote=RRM
HgeneNXF1chr11:62572801chr11:62430805ENST00000439713-110386_5369.333333333333334357.0DomainNTF2
HgeneNXF1chr11:62572801chr11:62430805ENST00000439713-110565_6199.333333333333334357.0DomainTAP-C
HgeneNXF1chr11:62572801chr11:62430805ENST00000531709-120119_1989.333333333333334380.6666666666667DomainNote=RRM
HgeneNXF1chr11:62572801chr11:62430805ENST00000531709-120386_5369.333333333333334380.6666666666667DomainNTF2
HgeneNXF1chr11:62572801chr11:62430805ENST00000531709-120565_6199.333333333333334380.6666666666667DomainTAP-C
HgeneNXF1chr11:62572801chr11:62430805ENST00000532297-222119_1989.333333333333334620.0DomainNote=RRM
HgeneNXF1chr11:62572801chr11:62430805ENST00000532297-222386_5369.333333333333334620.0DomainNTF2
HgeneNXF1chr11:62572801chr11:62430805ENST00000532297-222565_6199.333333333333334620.0DomainTAP-C
HgeneNXF1chr11:62572800chr11:62430805ENST00000294172-12167_1009.333333333333334620.0MotifNote=Nuclear localization signal
HgeneNXF1chr11:62572800chr11:62430805ENST00000294172-12183_1109.333333333333334620.0MotifNote=Nuclear export signal
HgeneNXF1chr11:62572800chr11:62430805ENST00000439713-11067_1009.333333333333334357.0MotifNote=Nuclear localization signal
HgeneNXF1chr11:62572800chr11:62430805ENST00000439713-11083_1109.333333333333334357.0MotifNote=Nuclear export signal
HgeneNXF1chr11:62572800chr11:62430805ENST00000531709-12067_1009.333333333333334380.6666666666667MotifNote=Nuclear localization signal
HgeneNXF1chr11:62572800chr11:62430805ENST00000531709-12083_1109.333333333333334380.6666666666667MotifNote=Nuclear export signal
HgeneNXF1chr11:62572800chr11:62430805ENST00000532297-22267_1009.333333333333334620.0MotifNote=Nuclear localization signal
HgeneNXF1chr11:62572800chr11:62430805ENST00000532297-22283_1109.333333333333334620.0MotifNote=Nuclear export signal
HgeneNXF1chr11:62572801chr11:62430805ENST00000294172-12167_1009.333333333333334620.0MotifNote=Nuclear localization signal
HgeneNXF1chr11:62572801chr11:62430805ENST00000294172-12183_1109.333333333333334620.0MotifNote=Nuclear export signal
HgeneNXF1chr11:62572801chr11:62430805ENST00000439713-11067_1009.333333333333334357.0MotifNote=Nuclear localization signal
HgeneNXF1chr11:62572801chr11:62430805ENST00000439713-11083_1109.333333333333334357.0MotifNote=Nuclear export signal
HgeneNXF1chr11:62572801chr11:62430805ENST00000531709-12067_1009.333333333333334380.6666666666667MotifNote=Nuclear localization signal
HgeneNXF1chr11:62572801chr11:62430805ENST00000531709-12083_1109.333333333333334380.6666666666667MotifNote=Nuclear export signal
HgeneNXF1chr11:62572801chr11:62430805ENST00000532297-22267_1009.333333333333334620.0MotifNote=Nuclear localization signal
HgeneNXF1chr11:62572801chr11:62430805ENST00000532297-22283_1109.333333333333334620.0MotifNote=Nuclear export signal
HgeneNXF1chr11:62572800chr11:62430805ENST00000294172-1212_1189.333333333333334620.0RegionNote=RNA-binding (RBD)
HgeneNXF1chr11:62572800chr11:62430805ENST00000294172-1212_609.333333333333334620.0RegionNote=Minor non-specific RNA-binding
HgeneNXF1chr11:62572800chr11:62430805ENST00000294172-12161_1189.333333333333334620.0RegionNote=Major non-specific RNA-binding
HgeneNXF1chr11:62572800chr11:62430805ENST00000439713-1102_1189.333333333333334357.0RegionNote=RNA-binding (RBD)
HgeneNXF1chr11:62572800chr11:62430805ENST00000439713-1102_609.333333333333334357.0RegionNote=Minor non-specific RNA-binding
HgeneNXF1chr11:62572800chr11:62430805ENST00000439713-11061_1189.333333333333334357.0RegionNote=Major non-specific RNA-binding
HgeneNXF1chr11:62572800chr11:62430805ENST00000531709-1202_1189.333333333333334380.6666666666667RegionNote=RNA-binding (RBD)
HgeneNXF1chr11:62572800chr11:62430805ENST00000531709-1202_609.333333333333334380.6666666666667RegionNote=Minor non-specific RNA-binding
HgeneNXF1chr11:62572800chr11:62430805ENST00000531709-12061_1189.333333333333334380.6666666666667RegionNote=Major non-specific RNA-binding
HgeneNXF1chr11:62572800chr11:62430805ENST00000532297-2222_1189.333333333333334620.0RegionNote=RNA-binding (RBD)
HgeneNXF1chr11:62572800chr11:62430805ENST00000532297-2222_609.333333333333334620.0RegionNote=Minor non-specific RNA-binding
HgeneNXF1chr11:62572800chr11:62430805ENST00000532297-22261_1189.333333333333334620.0RegionNote=Major non-specific RNA-binding
HgeneNXF1chr11:62572801chr11:62430805ENST00000294172-1212_1189.333333333333334620.0RegionNote=RNA-binding (RBD)
HgeneNXF1chr11:62572801chr11:62430805ENST00000294172-1212_609.333333333333334620.0RegionNote=Minor non-specific RNA-binding
HgeneNXF1chr11:62572801chr11:62430805ENST00000294172-12161_1189.333333333333334620.0RegionNote=Major non-specific RNA-binding
HgeneNXF1chr11:62572801chr11:62430805ENST00000439713-1102_1189.333333333333334357.0RegionNote=RNA-binding (RBD)
HgeneNXF1chr11:62572801chr11:62430805ENST00000439713-1102_609.333333333333334357.0RegionNote=Minor non-specific RNA-binding
HgeneNXF1chr11:62572801chr11:62430805ENST00000439713-11061_1189.333333333333334357.0RegionNote=Major non-specific RNA-binding
HgeneNXF1chr11:62572801chr11:62430805ENST00000531709-1202_1189.333333333333334380.6666666666667RegionNote=RNA-binding (RBD)
HgeneNXF1chr11:62572801chr11:62430805ENST00000531709-1202_609.333333333333334380.6666666666667RegionNote=Minor non-specific RNA-binding
HgeneNXF1chr11:62572801chr11:62430805ENST00000531709-12061_1189.333333333333334380.6666666666667RegionNote=Major non-specific RNA-binding
HgeneNXF1chr11:62572801chr11:62430805ENST00000532297-2222_1189.333333333333334620.0RegionNote=RNA-binding (RBD)
HgeneNXF1chr11:62572801chr11:62430805ENST00000532297-2222_609.333333333333334620.0RegionNote=Minor non-specific RNA-binding
HgeneNXF1chr11:62572801chr11:62430805ENST00000532297-22261_1189.333333333333334620.0RegionNote=Major non-specific RNA-binding
HgeneNXF1chr11:62572800chr11:62430805ENST00000294172-121266_2919.333333333333334620.0RepeatNote=LRR 1
HgeneNXF1chr11:62572800chr11:62430805ENST00000294172-121292_3159.333333333333334620.0RepeatNote=LRR 2
HgeneNXF1chr11:62572800chr11:62430805ENST00000294172-121316_3439.333333333333334620.0RepeatNote=LRR 3
HgeneNXF1chr11:62572800chr11:62430805ENST00000294172-121344_3719.333333333333334620.0RepeatNote=LRR 4
HgeneNXF1chr11:62572800chr11:62430805ENST00000439713-110266_2919.333333333333334357.0RepeatNote=LRR 1
HgeneNXF1chr11:62572800chr11:62430805ENST00000439713-110292_3159.333333333333334357.0RepeatNote=LRR 2
HgeneNXF1chr11:62572800chr11:62430805ENST00000439713-110316_3439.333333333333334357.0RepeatNote=LRR 3
HgeneNXF1chr11:62572800chr11:62430805ENST00000439713-110344_3719.333333333333334357.0RepeatNote=LRR 4
HgeneNXF1chr11:62572800chr11:62430805ENST00000531709-120266_2919.333333333333334380.6666666666667RepeatNote=LRR 1
HgeneNXF1chr11:62572800chr11:62430805ENST00000531709-120292_3159.333333333333334380.6666666666667RepeatNote=LRR 2
HgeneNXF1chr11:62572800chr11:62430805ENST00000531709-120316_3439.333333333333334380.6666666666667RepeatNote=LRR 3
HgeneNXF1chr11:62572800chr11:62430805ENST00000531709-120344_3719.333333333333334380.6666666666667RepeatNote=LRR 4
HgeneNXF1chr11:62572800chr11:62430805ENST00000532297-222266_2919.333333333333334620.0RepeatNote=LRR 1
HgeneNXF1chr11:62572800chr11:62430805ENST00000532297-222292_3159.333333333333334620.0RepeatNote=LRR 2
HgeneNXF1chr11:62572800chr11:62430805ENST00000532297-222316_3439.333333333333334620.0RepeatNote=LRR 3
HgeneNXF1chr11:62572800chr11:62430805ENST00000532297-222344_3719.333333333333334620.0RepeatNote=LRR 4
HgeneNXF1chr11:62572801chr11:62430805ENST00000294172-121266_2919.333333333333334620.0RepeatNote=LRR 1
HgeneNXF1chr11:62572801chr11:62430805ENST00000294172-121292_3159.333333333333334620.0RepeatNote=LRR 2
HgeneNXF1chr11:62572801chr11:62430805ENST00000294172-121316_3439.333333333333334620.0RepeatNote=LRR 3
HgeneNXF1chr11:62572801chr11:62430805ENST00000294172-121344_3719.333333333333334620.0RepeatNote=LRR 4
HgeneNXF1chr11:62572801chr11:62430805ENST00000439713-110266_2919.333333333333334357.0RepeatNote=LRR 1
HgeneNXF1chr11:62572801chr11:62430805ENST00000439713-110292_3159.333333333333334357.0RepeatNote=LRR 2
HgeneNXF1chr11:62572801chr11:62430805ENST00000439713-110316_3439.333333333333334357.0RepeatNote=LRR 3
HgeneNXF1chr11:62572801chr11:62430805ENST00000439713-110344_3719.333333333333334357.0RepeatNote=LRR 4
HgeneNXF1chr11:62572801chr11:62430805ENST00000531709-120266_2919.333333333333334380.6666666666667RepeatNote=LRR 1
HgeneNXF1chr11:62572801chr11:62430805ENST00000531709-120292_3159.333333333333334380.6666666666667RepeatNote=LRR 2
HgeneNXF1chr11:62572801chr11:62430805ENST00000531709-120316_3439.333333333333334380.6666666666667RepeatNote=LRR 3
HgeneNXF1chr11:62572801chr11:62430805ENST00000531709-120344_3719.333333333333334380.6666666666667RepeatNote=LRR 4
HgeneNXF1chr11:62572801chr11:62430805ENST00000532297-222266_2919.333333333333334620.0RepeatNote=LRR 1
HgeneNXF1chr11:62572801chr11:62430805ENST00000532297-222292_3159.333333333333334620.0RepeatNote=LRR 2
HgeneNXF1chr11:62572801chr11:62430805ENST00000532297-222316_3439.333333333333334620.0RepeatNote=LRR 3
HgeneNXF1chr11:62572801chr11:62430805ENST00000532297-222344_3719.333333333333334620.0RepeatNote=LRR 4
TgeneC11orf48chr11:62572800chr11:62430805ENST00000354588471_128221.0264.0DomainLBH
TgeneC11orf48chr11:62572800chr11:62430805ENST00000431002251_128247.0290.0DomainLBH
TgeneC11orf48chr11:62572800chr11:62430805ENST00000532208471_128221.0264.0DomainLBH
TgeneC11orf48chr11:62572801chr11:62430805ENST00000354588471_128221.0264.0DomainLBH
TgeneC11orf48chr11:62572801chr11:62430805ENST00000431002251_128247.0290.0DomainLBH
TgeneC11orf48chr11:62572801chr11:62430805ENST00000532208471_128221.0264.0DomainLBH


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Fusion Gene Sequence for NXF1-C11orf48


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones.
>In-frame_ENST00000531709_ENST00000354588_TCGA-VD-AA8S_NXF1_chr11_62572800_-_C11orf48_chr11_62430805_length(transcript)=585nt_BP=142nt
TATAAATGCGGTGGCGCCCGGCGTAGGGACACTTCGGTCCTGAGCGCTTGGGAGTTAGGTTGTTTGCCGGCGTAGCGGCCAGCGCCTGAG
CCCGCCCTTGATCTTCGCTGTGGCATGGCGGACGAGGGGAAGTCGTACAGCGGTCCAGTGCACGTGCCAACATTACACTGTCAGGGAAGA
AGCGCAGAAAACTCCTCCAGCAGATCCGGCTTGCCCAGAAAGAGAAGACAGCCATGGAAGTGGAAGCCCCTTCAAAGCCAGCCAGGACTA
GTGAACCACAGCTCAAAAGGCAAAAGAAGACAAAAGCCCCCCAGGATGTAGAAATGAAGGACCTTGAAGATGAGAGCTAAACCTCTTCCA
CTAGAAGATTCTCAACTGGAGCCAGCCTTCAGACTCAGTGGTTGTTTCAGAGGACTTTGACAAAAGCAAGGCCCCTTTTCACTCTCCAGA
TTTCCTCCTACCTAATGGCCTACTGACCTCCCCTAGAGGGATGTCTTTGGGAGGGAAGAAGGTACAGAAGAAAGATTGGAGAAGGGCCTC

>In-frame_ENST00000531709_ENST00000354588_TCGA-VD-AA8S_NXF1_chr11_62572800_-_C11orf48_chr11_62430805_length(amino acids)=80AA_start in transcript=107_stop in transcript=349

--------------------------------------------------------------
>In-frame_ENST00000531709_ENST00000431002_TCGA-VD-AA8S_NXF1_chr11_62572800_-_C11orf48_chr11_62430805_length(transcript)=582nt_BP=142nt
TATAAATGCGGTGGCGCCCGGCGTAGGGACACTTCGGTCCTGAGCGCTTGGGAGTTAGGTTGTTTGCCGGCGTAGCGGCCAGCGCCTGAG
CCCGCCCTTGATCTTCGCTGTGGCATGGCGGACGAGGGGAAGTCGTACAGCGGTCCAGTGCACGTGCCAACATTACACTGTCAGGGAAGA
AGCGCAGAAAACTCCTCCAGCAGATCCGGCTTGCCCAGAAAGAGAAGACAGCCATGGAAGTGGAAGCCCCTTCAAAGCCAGCCAGGACTA
GTGAACCACAGCTCAAAAGGCAAAAGAAGACAAAAGCCCCCCAGGATGTAGAAATGAAGGACCTTGAAGATGAGAGCTAAACCTCTTCCA
CTAGAAGATTCTCAACTGGAGCCAGCCTTCAGACTCAGTGGTTGTTTCAGAGGACTTTGACAAAAGCAAGGCCCCTTTTCACTCTCCAGA
TTTCCTCCTACCTAATGGCCTACTGACCTCCCCTAGAGGGATGTCTTTGGGAGGGAAGAAGGTACAGAAGAAAGATTGGAGAAGGGCCTC

>In-frame_ENST00000531709_ENST00000431002_TCGA-VD-AA8S_NXF1_chr11_62572800_-_C11orf48_chr11_62430805_length(amino acids)=80AA_start in transcript=107_stop in transcript=349

--------------------------------------------------------------
>In-frame_ENST00000531709_ENST00000532208_TCGA-VD-AA8S_NXF1_chr11_62572800_-_C11orf48_chr11_62430805_length(transcript)=552nt_BP=142nt
TATAAATGCGGTGGCGCCCGGCGTAGGGACACTTCGGTCCTGAGCGCTTGGGAGTTAGGTTGTTTGCCGGCGTAGCGGCCAGCGCCTGAG
CCCGCCCTTGATCTTCGCTGTGGCATGGCGGACGAGGGGAAGTCGTACAGCGGTCCAGTGCACGTGCCAACATTACACTGTCAGGGAAGA
AGCGCAGAAAACTCCTCCAGCAGATCCGGCTTGCCCAGAAAGAGAAGACAGCCATGGAAGTGGAAGCCCCTTCAAAGCCAGCCAGGACTA
GTGAACCACAGCTCAAAAGGCAAAAGAAGACAAAAGCCCCCCAGGATGTAGAAATGAAGGACCTTGAAGATGAGAGCTAAACCTCTTCCA
CTAGAAGATTCTCAACTGGAGCCAGCCTTCAGACTCAGTGGTTGTTTCAGAGGACTTTGACAAAAGCAAGGCCCCTTTTCACTCTCCAGA
TTTCCTCCTACCTAATGGCCTACTGACCTCCCCTAGAGGGATGTCTTTGGGAGGGAAGAAGGTACAGAAGAAAGATTGGAGAAGGGCCTC

>In-frame_ENST00000531709_ENST00000532208_TCGA-VD-AA8S_NXF1_chr11_62572800_-_C11orf48_chr11_62430805_length(amino acids)=80AA_start in transcript=107_stop in transcript=349

--------------------------------------------------------------
>In-frame_ENST00000294172_ENST00000354588_TCGA-VD-AA8S_NXF1_chr11_62572800_-_C11orf48_chr11_62430805_length(transcript)=607nt_BP=164nt
CGGCGCGCGACGTGCTTTGCTGTATAAATGCGGTGGCGCCCGGCGTAGGGACACTTCGGTCCTGAGCGCTTGGGAGTTAGGTTGTTTGCC
GGCGTAGCGGCCAGCGCCTGAGCCCGCCCTTGATCTTCGCTGTGGCATGGCGGACGAGGGGAAGTCGTACAGCGGTCCAGTGCACGTGCC
AACATTACACTGTCAGGGAAGAAGCGCAGAAAACTCCTCCAGCAGATCCGGCTTGCCCAGAAAGAGAAGACAGCCATGGAAGTGGAAGCC
CCTTCAAAGCCAGCCAGGACTAGTGAACCACAGCTCAAAAGGCAAAAGAAGACAAAAGCCCCCCAGGATGTAGAAATGAAGGACCTTGAA
GATGAGAGCTAAACCTCTTCCACTAGAAGATTCTCAACTGGAGCCAGCCTTCAGACTCAGTGGTTGTTTCAGAGGACTTTGACAAAAGCA
AGGCCCCTTTTCACTCTCCAGATTTCCTCCTACCTAATGGCCTACTGACCTCCCCTAGAGGGATGTCTTTGGGAGGGAAGAAGGTACAGA

>In-frame_ENST00000294172_ENST00000354588_TCGA-VD-AA8S_NXF1_chr11_62572800_-_C11orf48_chr11_62430805_length(amino acids)=80AA_start in transcript=129_stop in transcript=371

--------------------------------------------------------------
>In-frame_ENST00000294172_ENST00000431002_TCGA-VD-AA8S_NXF1_chr11_62572800_-_C11orf48_chr11_62430805_length(transcript)=604nt_BP=164nt
CGGCGCGCGACGTGCTTTGCTGTATAAATGCGGTGGCGCCCGGCGTAGGGACACTTCGGTCCTGAGCGCTTGGGAGTTAGGTTGTTTGCC
GGCGTAGCGGCCAGCGCCTGAGCCCGCCCTTGATCTTCGCTGTGGCATGGCGGACGAGGGGAAGTCGTACAGCGGTCCAGTGCACGTGCC
AACATTACACTGTCAGGGAAGAAGCGCAGAAAACTCCTCCAGCAGATCCGGCTTGCCCAGAAAGAGAAGACAGCCATGGAAGTGGAAGCC
CCTTCAAAGCCAGCCAGGACTAGTGAACCACAGCTCAAAAGGCAAAAGAAGACAAAAGCCCCCCAGGATGTAGAAATGAAGGACCTTGAA
GATGAGAGCTAAACCTCTTCCACTAGAAGATTCTCAACTGGAGCCAGCCTTCAGACTCAGTGGTTGTTTCAGAGGACTTTGACAAAAGCA
AGGCCCCTTTTCACTCTCCAGATTTCCTCCTACCTAATGGCCTACTGACCTCCCCTAGAGGGATGTCTTTGGGAGGGAAGAAGGTACAGA

>In-frame_ENST00000294172_ENST00000431002_TCGA-VD-AA8S_NXF1_chr11_62572800_-_C11orf48_chr11_62430805_length(amino acids)=80AA_start in transcript=129_stop in transcript=371

--------------------------------------------------------------
>In-frame_ENST00000294172_ENST00000532208_TCGA-VD-AA8S_NXF1_chr11_62572800_-_C11orf48_chr11_62430805_length(transcript)=574nt_BP=164nt
CGGCGCGCGACGTGCTTTGCTGTATAAATGCGGTGGCGCCCGGCGTAGGGACACTTCGGTCCTGAGCGCTTGGGAGTTAGGTTGTTTGCC
GGCGTAGCGGCCAGCGCCTGAGCCCGCCCTTGATCTTCGCTGTGGCATGGCGGACGAGGGGAAGTCGTACAGCGGTCCAGTGCACGTGCC
AACATTACACTGTCAGGGAAGAAGCGCAGAAAACTCCTCCAGCAGATCCGGCTTGCCCAGAAAGAGAAGACAGCCATGGAAGTGGAAGCC
CCTTCAAAGCCAGCCAGGACTAGTGAACCACAGCTCAAAAGGCAAAAGAAGACAAAAGCCCCCCAGGATGTAGAAATGAAGGACCTTGAA
GATGAGAGCTAAACCTCTTCCACTAGAAGATTCTCAACTGGAGCCAGCCTTCAGACTCAGTGGTTGTTTCAGAGGACTTTGACAAAAGCA
AGGCCCCTTTTCACTCTCCAGATTTCCTCCTACCTAATGGCCTACTGACCTCCCCTAGAGGGATGTCTTTGGGAGGGAAGAAGGTACAGA

>In-frame_ENST00000294172_ENST00000532208_TCGA-VD-AA8S_NXF1_chr11_62572800_-_C11orf48_chr11_62430805_length(amino acids)=80AA_start in transcript=129_stop in transcript=371

--------------------------------------------------------------
>In-frame_ENST00000532297_ENST00000354588_TCGA-VD-AA8S_NXF1_chr11_62572800_-_C11orf48_chr11_62430805_length(transcript)=1101nt_BP=658nt
ATAGAGACAACAGTCAGGGGCTGGTGGTGGTGCTTTTGGGGGTCTAGGAGAGCCCAAGGCCCTGATATTTTAAAATGTCCTCCTCGGCAT
CTCCAGCAAGTTGCCACTGCTGGCGAAGAAAGCGAGGTATAGACAAGGAGCCGAGCTGAAACACTGGCTAGATTCCGGTAGGGGTCTGAG
CCATCACTCCCACCTGGAGGCGCGGTCTCCATTCCTCTGAAGCCCTTTGTGCGGCCCCCTTCCTCACTGAGTTCTGGGCTGCGGCGGCAG
CACTGTGCTCTAGCACTAACTCTGAAGCTGCCAGGGCAGCGTCAGCGGACAGATGAAAAGGTGCGGGGACATGCTGGCTGCCAGCCGGGG
TTCCGCAAGTTCAGGTCTTGGGCGGGGCGTGGAGGGCCAGGCCCCGCCCCTCGAACGACGGCCTTAAGTGTGCGCACGCGCAGGGGGCCG
CGCTTTCTCCGGGCGGCGGCACCGCCCACAGCCTGGGACGTCAGCGGCGCGCGACGTGCTTTGCTGTATAAATGCGGTGGCGCCCGGCGT
AGGGACACTTCGGTCCTGAGCGCTTGGGAGTTAGGTTGTTTGCCGGCGTAGCGGCCAGCGCCTGAGCCCGCCCTTGATCTTCGCTGTGGC
ATGGCGGACGAGGGGAAGTCGTACAGCGGTCCAGTGCACGTGCCAACATTACACTGTCAGGGAAGAAGCGCAGAAAACTCCTCCAGCAGA
TCCGGCTTGCCCAGAAAGAGAAGACAGCCATGGAAGTGGAAGCCCCTTCAAAGCCAGCCAGGACTAGTGAACCACAGCTCAAAAGGCAAA
AGAAGACAAAAGCCCCCCAGGATGTAGAAATGAAGGACCTTGAAGATGAGAGCTAAACCTCTTCCACTAGAAGATTCTCAACTGGAGCCA
GCCTTCAGACTCAGTGGTTGTTTCAGAGGACTTTGACAAAAGCAAGGCCCCTTTTCACTCTCCAGATTTCCTCCTACCTAATGGCCTACT
GACCTCCCCTAGAGGGATGTCTTTGGGAGGGAAGAAGGTACAGAAGAAAGATTGGAGAAGGGCCTCTCTAGCAGTCAACTCCATTTGTAA

>In-frame_ENST00000532297_ENST00000354588_TCGA-VD-AA8S_NXF1_chr11_62572800_-_C11orf48_chr11_62430805_length(amino acids)=124AA_start in transcript=216_stop in transcript=590
MKPFVRPPSSLSSGLRRQHCALALTLKLPGQRQRTDEKVRGHAGCQPGFRKFRSWAGRGGPGPAPRTTALSVRTRRGPRFLRAAAPPTAW

--------------------------------------------------------------
>In-frame_ENST00000532297_ENST00000431002_TCGA-VD-AA8S_NXF1_chr11_62572800_-_C11orf48_chr11_62430805_length(transcript)=1098nt_BP=658nt
ATAGAGACAACAGTCAGGGGCTGGTGGTGGTGCTTTTGGGGGTCTAGGAGAGCCCAAGGCCCTGATATTTTAAAATGTCCTCCTCGGCAT
CTCCAGCAAGTTGCCACTGCTGGCGAAGAAAGCGAGGTATAGACAAGGAGCCGAGCTGAAACACTGGCTAGATTCCGGTAGGGGTCTGAG
CCATCACTCCCACCTGGAGGCGCGGTCTCCATTCCTCTGAAGCCCTTTGTGCGGCCCCCTTCCTCACTGAGTTCTGGGCTGCGGCGGCAG
CACTGTGCTCTAGCACTAACTCTGAAGCTGCCAGGGCAGCGTCAGCGGACAGATGAAAAGGTGCGGGGACATGCTGGCTGCCAGCCGGGG
TTCCGCAAGTTCAGGTCTTGGGCGGGGCGTGGAGGGCCAGGCCCCGCCCCTCGAACGACGGCCTTAAGTGTGCGCACGCGCAGGGGGCCG
CGCTTTCTCCGGGCGGCGGCACCGCCCACAGCCTGGGACGTCAGCGGCGCGCGACGTGCTTTGCTGTATAAATGCGGTGGCGCCCGGCGT
AGGGACACTTCGGTCCTGAGCGCTTGGGAGTTAGGTTGTTTGCCGGCGTAGCGGCCAGCGCCTGAGCCCGCCCTTGATCTTCGCTGTGGC
ATGGCGGACGAGGGGAAGTCGTACAGCGGTCCAGTGCACGTGCCAACATTACACTGTCAGGGAAGAAGCGCAGAAAACTCCTCCAGCAGA
TCCGGCTTGCCCAGAAAGAGAAGACAGCCATGGAAGTGGAAGCCCCTTCAAAGCCAGCCAGGACTAGTGAACCACAGCTCAAAAGGCAAA
AGAAGACAAAAGCCCCCCAGGATGTAGAAATGAAGGACCTTGAAGATGAGAGCTAAACCTCTTCCACTAGAAGATTCTCAACTGGAGCCA
GCCTTCAGACTCAGTGGTTGTTTCAGAGGACTTTGACAAAAGCAAGGCCCCTTTTCACTCTCCAGATTTCCTCCTACCTAATGGCCTACT
GACCTCCCCTAGAGGGATGTCTTTGGGAGGGAAGAAGGTACAGAAGAAAGATTGGAGAAGGGCCTCTCTAGCAGTCAACTCCATTTGTAA

>In-frame_ENST00000532297_ENST00000431002_TCGA-VD-AA8S_NXF1_chr11_62572800_-_C11orf48_chr11_62430805_length(amino acids)=124AA_start in transcript=216_stop in transcript=590
MKPFVRPPSSLSSGLRRQHCALALTLKLPGQRQRTDEKVRGHAGCQPGFRKFRSWAGRGGPGPAPRTTALSVRTRRGPRFLRAAAPPTAW

--------------------------------------------------------------
>In-frame_ENST00000532297_ENST00000532208_TCGA-VD-AA8S_NXF1_chr11_62572800_-_C11orf48_chr11_62430805_length(transcript)=1068nt_BP=658nt
ATAGAGACAACAGTCAGGGGCTGGTGGTGGTGCTTTTGGGGGTCTAGGAGAGCCCAAGGCCCTGATATTTTAAAATGTCCTCCTCGGCAT
CTCCAGCAAGTTGCCACTGCTGGCGAAGAAAGCGAGGTATAGACAAGGAGCCGAGCTGAAACACTGGCTAGATTCCGGTAGGGGTCTGAG
CCATCACTCCCACCTGGAGGCGCGGTCTCCATTCCTCTGAAGCCCTTTGTGCGGCCCCCTTCCTCACTGAGTTCTGGGCTGCGGCGGCAG
CACTGTGCTCTAGCACTAACTCTGAAGCTGCCAGGGCAGCGTCAGCGGACAGATGAAAAGGTGCGGGGACATGCTGGCTGCCAGCCGGGG
TTCCGCAAGTTCAGGTCTTGGGCGGGGCGTGGAGGGCCAGGCCCCGCCCCTCGAACGACGGCCTTAAGTGTGCGCACGCGCAGGGGGCCG
CGCTTTCTCCGGGCGGCGGCACCGCCCACAGCCTGGGACGTCAGCGGCGCGCGACGTGCTTTGCTGTATAAATGCGGTGGCGCCCGGCGT
AGGGACACTTCGGTCCTGAGCGCTTGGGAGTTAGGTTGTTTGCCGGCGTAGCGGCCAGCGCCTGAGCCCGCCCTTGATCTTCGCTGTGGC
ATGGCGGACGAGGGGAAGTCGTACAGCGGTCCAGTGCACGTGCCAACATTACACTGTCAGGGAAGAAGCGCAGAAAACTCCTCCAGCAGA
TCCGGCTTGCCCAGAAAGAGAAGACAGCCATGGAAGTGGAAGCCCCTTCAAAGCCAGCCAGGACTAGTGAACCACAGCTCAAAAGGCAAA
AGAAGACAAAAGCCCCCCAGGATGTAGAAATGAAGGACCTTGAAGATGAGAGCTAAACCTCTTCCACTAGAAGATTCTCAACTGGAGCCA
GCCTTCAGACTCAGTGGTTGTTTCAGAGGACTTTGACAAAAGCAAGGCCCCTTTTCACTCTCCAGATTTCCTCCTACCTAATGGCCTACT

>In-frame_ENST00000532297_ENST00000532208_TCGA-VD-AA8S_NXF1_chr11_62572800_-_C11orf48_chr11_62430805_length(amino acids)=124AA_start in transcript=216_stop in transcript=590
MKPFVRPPSSLSSGLRRQHCALALTLKLPGQRQRTDEKVRGHAGCQPGFRKFRSWAGRGGPGPAPRTTALSVRTRRGPRFLRAAAPPTAW

--------------------------------------------------------------
>In-frame_ENST00000439713_ENST00000354588_TCGA-VD-AA8S_NXF1_chr11_62572800_-_C11orf48_chr11_62430805_length(transcript)=544nt_BP=101nt
GAGCGCTTGGGAGTTAGGTTGTTTGCCGGCGTAGCGGCCAGCGCCTGAGCCCGCCCTTGATCTTCGCTGTGGCATGGCGGACGAGGGGAA
GTCGTACAGCGGTCCAGTGCACGTGCCAACATTACACTGTCAGGGAAGAAGCGCAGAAAACTCCTCCAGCAGATCCGGCTTGCCCAGAAA
GAGAAGACAGCCATGGAAGTGGAAGCCCCTTCAAAGCCAGCCAGGACTAGTGAACCACAGCTCAAAAGGCAAAAGAAGACAAAAGCCCCC
CAGGATGTAGAAATGAAGGACCTTGAAGATGAGAGCTAAACCTCTTCCACTAGAAGATTCTCAACTGGAGCCAGCCTTCAGACTCAGTGG
TTGTTTCAGAGGACTTTGACAAAAGCAAGGCCCCTTTTCACTCTCCAGATTTCCTCCTACCTAATGGCCTACTGACCTCCCCTAGAGGGA
TGTCTTTGGGAGGGAAGAAGGTACAGAAGAAAGATTGGAGAAGGGCCTCTCTAGCAGTCAACTCCATTTGTAATAAAGCCCTAGCACTCT

>In-frame_ENST00000439713_ENST00000354588_TCGA-VD-AA8S_NXF1_chr11_62572800_-_C11orf48_chr11_62430805_length(amino acids)=80AA_start in transcript=66_stop in transcript=308

--------------------------------------------------------------
>In-frame_ENST00000439713_ENST00000431002_TCGA-VD-AA8S_NXF1_chr11_62572800_-_C11orf48_chr11_62430805_length(transcript)=541nt_BP=101nt
GAGCGCTTGGGAGTTAGGTTGTTTGCCGGCGTAGCGGCCAGCGCCTGAGCCCGCCCTTGATCTTCGCTGTGGCATGGCGGACGAGGGGAA
GTCGTACAGCGGTCCAGTGCACGTGCCAACATTACACTGTCAGGGAAGAAGCGCAGAAAACTCCTCCAGCAGATCCGGCTTGCCCAGAAA
GAGAAGACAGCCATGGAAGTGGAAGCCCCTTCAAAGCCAGCCAGGACTAGTGAACCACAGCTCAAAAGGCAAAAGAAGACAAAAGCCCCC
CAGGATGTAGAAATGAAGGACCTTGAAGATGAGAGCTAAACCTCTTCCACTAGAAGATTCTCAACTGGAGCCAGCCTTCAGACTCAGTGG
TTGTTTCAGAGGACTTTGACAAAAGCAAGGCCCCTTTTCACTCTCCAGATTTCCTCCTACCTAATGGCCTACTGACCTCCCCTAGAGGGA
TGTCTTTGGGAGGGAAGAAGGTACAGAAGAAAGATTGGAGAAGGGCCTCTCTAGCAGTCAACTCCATTTGTAATAAAGCCCTAGCACTCT

>In-frame_ENST00000439713_ENST00000431002_TCGA-VD-AA8S_NXF1_chr11_62572800_-_C11orf48_chr11_62430805_length(amino acids)=80AA_start in transcript=66_stop in transcript=308

--------------------------------------------------------------
>In-frame_ENST00000439713_ENST00000532208_TCGA-VD-AA8S_NXF1_chr11_62572800_-_C11orf48_chr11_62430805_length(transcript)=511nt_BP=101nt
GAGCGCTTGGGAGTTAGGTTGTTTGCCGGCGTAGCGGCCAGCGCCTGAGCCCGCCCTTGATCTTCGCTGTGGCATGGCGGACGAGGGGAA
GTCGTACAGCGGTCCAGTGCACGTGCCAACATTACACTGTCAGGGAAGAAGCGCAGAAAACTCCTCCAGCAGATCCGGCTTGCCCAGAAA
GAGAAGACAGCCATGGAAGTGGAAGCCCCTTCAAAGCCAGCCAGGACTAGTGAACCACAGCTCAAAAGGCAAAAGAAGACAAAAGCCCCC
CAGGATGTAGAAATGAAGGACCTTGAAGATGAGAGCTAAACCTCTTCCACTAGAAGATTCTCAACTGGAGCCAGCCTTCAGACTCAGTGG
TTGTTTCAGAGGACTTTGACAAAAGCAAGGCCCCTTTTCACTCTCCAGATTTCCTCCTACCTAATGGCCTACTGACCTCCCCTAGAGGGA

>In-frame_ENST00000439713_ENST00000532208_TCGA-VD-AA8S_NXF1_chr11_62572800_-_C11orf48_chr11_62430805_length(amino acids)=80AA_start in transcript=66_stop in transcript=308

--------------------------------------------------------------
>In-frame_ENST00000531709_ENST00000354588_TCGA-VD-AA8S_NXF1_chr11_62572801_-_C11orf48_chr11_62430805_length(transcript)=585nt_BP=142nt
TATAAATGCGGTGGCGCCCGGCGTAGGGACACTTCGGTCCTGAGCGCTTGGGAGTTAGGTTGTTTGCCGGCGTAGCGGCCAGCGCCTGAG
CCCGCCCTTGATCTTCGCTGTGGCATGGCGGACGAGGGGAAGTCGTACAGCGGTCCAGTGCACGTGCCAACATTACACTGTCAGGGAAGA
AGCGCAGAAAACTCCTCCAGCAGATCCGGCTTGCCCAGAAAGAGAAGACAGCCATGGAAGTGGAAGCCCCTTCAAAGCCAGCCAGGACTA
GTGAACCACAGCTCAAAAGGCAAAAGAAGACAAAAGCCCCCCAGGATGTAGAAATGAAGGACCTTGAAGATGAGAGCTAAACCTCTTCCA
CTAGAAGATTCTCAACTGGAGCCAGCCTTCAGACTCAGTGGTTGTTTCAGAGGACTTTGACAAAAGCAAGGCCCCTTTTCACTCTCCAGA
TTTCCTCCTACCTAATGGCCTACTGACCTCCCCTAGAGGGATGTCTTTGGGAGGGAAGAAGGTACAGAAGAAAGATTGGAGAAGGGCCTC

>In-frame_ENST00000531709_ENST00000354588_TCGA-VD-AA8S_NXF1_chr11_62572801_-_C11orf48_chr11_62430805_length(amino acids)=80AA_start in transcript=107_stop in transcript=349

--------------------------------------------------------------
>In-frame_ENST00000531709_ENST00000431002_TCGA-VD-AA8S_NXF1_chr11_62572801_-_C11orf48_chr11_62430805_length(transcript)=582nt_BP=142nt
TATAAATGCGGTGGCGCCCGGCGTAGGGACACTTCGGTCCTGAGCGCTTGGGAGTTAGGTTGTTTGCCGGCGTAGCGGCCAGCGCCTGAG
CCCGCCCTTGATCTTCGCTGTGGCATGGCGGACGAGGGGAAGTCGTACAGCGGTCCAGTGCACGTGCCAACATTACACTGTCAGGGAAGA
AGCGCAGAAAACTCCTCCAGCAGATCCGGCTTGCCCAGAAAGAGAAGACAGCCATGGAAGTGGAAGCCCCTTCAAAGCCAGCCAGGACTA
GTGAACCACAGCTCAAAAGGCAAAAGAAGACAAAAGCCCCCCAGGATGTAGAAATGAAGGACCTTGAAGATGAGAGCTAAACCTCTTCCA
CTAGAAGATTCTCAACTGGAGCCAGCCTTCAGACTCAGTGGTTGTTTCAGAGGACTTTGACAAAAGCAAGGCCCCTTTTCACTCTCCAGA
TTTCCTCCTACCTAATGGCCTACTGACCTCCCCTAGAGGGATGTCTTTGGGAGGGAAGAAGGTACAGAAGAAAGATTGGAGAAGGGCCTC

>In-frame_ENST00000531709_ENST00000431002_TCGA-VD-AA8S_NXF1_chr11_62572801_-_C11orf48_chr11_62430805_length(amino acids)=80AA_start in transcript=107_stop in transcript=349

--------------------------------------------------------------
>In-frame_ENST00000531709_ENST00000532208_TCGA-VD-AA8S_NXF1_chr11_62572801_-_C11orf48_chr11_62430805_length(transcript)=552nt_BP=142nt
TATAAATGCGGTGGCGCCCGGCGTAGGGACACTTCGGTCCTGAGCGCTTGGGAGTTAGGTTGTTTGCCGGCGTAGCGGCCAGCGCCTGAG
CCCGCCCTTGATCTTCGCTGTGGCATGGCGGACGAGGGGAAGTCGTACAGCGGTCCAGTGCACGTGCCAACATTACACTGTCAGGGAAGA
AGCGCAGAAAACTCCTCCAGCAGATCCGGCTTGCCCAGAAAGAGAAGACAGCCATGGAAGTGGAAGCCCCTTCAAAGCCAGCCAGGACTA
GTGAACCACAGCTCAAAAGGCAAAAGAAGACAAAAGCCCCCCAGGATGTAGAAATGAAGGACCTTGAAGATGAGAGCTAAACCTCTTCCA
CTAGAAGATTCTCAACTGGAGCCAGCCTTCAGACTCAGTGGTTGTTTCAGAGGACTTTGACAAAAGCAAGGCCCCTTTTCACTCTCCAGA
TTTCCTCCTACCTAATGGCCTACTGACCTCCCCTAGAGGGATGTCTTTGGGAGGGAAGAAGGTACAGAAGAAAGATTGGAGAAGGGCCTC

>In-frame_ENST00000531709_ENST00000532208_TCGA-VD-AA8S_NXF1_chr11_62572801_-_C11orf48_chr11_62430805_length(amino acids)=80AA_start in transcript=107_stop in transcript=349

--------------------------------------------------------------
>In-frame_ENST00000294172_ENST00000354588_TCGA-VD-AA8S_NXF1_chr11_62572801_-_C11orf48_chr11_62430805_length(transcript)=607nt_BP=164nt
CGGCGCGCGACGTGCTTTGCTGTATAAATGCGGTGGCGCCCGGCGTAGGGACACTTCGGTCCTGAGCGCTTGGGAGTTAGGTTGTTTGCC
GGCGTAGCGGCCAGCGCCTGAGCCCGCCCTTGATCTTCGCTGTGGCATGGCGGACGAGGGGAAGTCGTACAGCGGTCCAGTGCACGTGCC
AACATTACACTGTCAGGGAAGAAGCGCAGAAAACTCCTCCAGCAGATCCGGCTTGCCCAGAAAGAGAAGACAGCCATGGAAGTGGAAGCC
CCTTCAAAGCCAGCCAGGACTAGTGAACCACAGCTCAAAAGGCAAAAGAAGACAAAAGCCCCCCAGGATGTAGAAATGAAGGACCTTGAA
GATGAGAGCTAAACCTCTTCCACTAGAAGATTCTCAACTGGAGCCAGCCTTCAGACTCAGTGGTTGTTTCAGAGGACTTTGACAAAAGCA
AGGCCCCTTTTCACTCTCCAGATTTCCTCCTACCTAATGGCCTACTGACCTCCCCTAGAGGGATGTCTTTGGGAGGGAAGAAGGTACAGA

>In-frame_ENST00000294172_ENST00000354588_TCGA-VD-AA8S_NXF1_chr11_62572801_-_C11orf48_chr11_62430805_length(amino acids)=80AA_start in transcript=129_stop in transcript=371

--------------------------------------------------------------
>In-frame_ENST00000294172_ENST00000431002_TCGA-VD-AA8S_NXF1_chr11_62572801_-_C11orf48_chr11_62430805_length(transcript)=604nt_BP=164nt
CGGCGCGCGACGTGCTTTGCTGTATAAATGCGGTGGCGCCCGGCGTAGGGACACTTCGGTCCTGAGCGCTTGGGAGTTAGGTTGTTTGCC
GGCGTAGCGGCCAGCGCCTGAGCCCGCCCTTGATCTTCGCTGTGGCATGGCGGACGAGGGGAAGTCGTACAGCGGTCCAGTGCACGTGCC
AACATTACACTGTCAGGGAAGAAGCGCAGAAAACTCCTCCAGCAGATCCGGCTTGCCCAGAAAGAGAAGACAGCCATGGAAGTGGAAGCC
CCTTCAAAGCCAGCCAGGACTAGTGAACCACAGCTCAAAAGGCAAAAGAAGACAAAAGCCCCCCAGGATGTAGAAATGAAGGACCTTGAA
GATGAGAGCTAAACCTCTTCCACTAGAAGATTCTCAACTGGAGCCAGCCTTCAGACTCAGTGGTTGTTTCAGAGGACTTTGACAAAAGCA
AGGCCCCTTTTCACTCTCCAGATTTCCTCCTACCTAATGGCCTACTGACCTCCCCTAGAGGGATGTCTTTGGGAGGGAAGAAGGTACAGA

>In-frame_ENST00000294172_ENST00000431002_TCGA-VD-AA8S_NXF1_chr11_62572801_-_C11orf48_chr11_62430805_length(amino acids)=80AA_start in transcript=129_stop in transcript=371

--------------------------------------------------------------
>In-frame_ENST00000294172_ENST00000532208_TCGA-VD-AA8S_NXF1_chr11_62572801_-_C11orf48_chr11_62430805_length(transcript)=574nt_BP=164nt
CGGCGCGCGACGTGCTTTGCTGTATAAATGCGGTGGCGCCCGGCGTAGGGACACTTCGGTCCTGAGCGCTTGGGAGTTAGGTTGTTTGCC
GGCGTAGCGGCCAGCGCCTGAGCCCGCCCTTGATCTTCGCTGTGGCATGGCGGACGAGGGGAAGTCGTACAGCGGTCCAGTGCACGTGCC
AACATTACACTGTCAGGGAAGAAGCGCAGAAAACTCCTCCAGCAGATCCGGCTTGCCCAGAAAGAGAAGACAGCCATGGAAGTGGAAGCC
CCTTCAAAGCCAGCCAGGACTAGTGAACCACAGCTCAAAAGGCAAAAGAAGACAAAAGCCCCCCAGGATGTAGAAATGAAGGACCTTGAA
GATGAGAGCTAAACCTCTTCCACTAGAAGATTCTCAACTGGAGCCAGCCTTCAGACTCAGTGGTTGTTTCAGAGGACTTTGACAAAAGCA
AGGCCCCTTTTCACTCTCCAGATTTCCTCCTACCTAATGGCCTACTGACCTCCCCTAGAGGGATGTCTTTGGGAGGGAAGAAGGTACAGA

>In-frame_ENST00000294172_ENST00000532208_TCGA-VD-AA8S_NXF1_chr11_62572801_-_C11orf48_chr11_62430805_length(amino acids)=80AA_start in transcript=129_stop in transcript=371

--------------------------------------------------------------
>In-frame_ENST00000532297_ENST00000354588_TCGA-VD-AA8S_NXF1_chr11_62572801_-_C11orf48_chr11_62430805_length(transcript)=1101nt_BP=658nt
ATAGAGACAACAGTCAGGGGCTGGTGGTGGTGCTTTTGGGGGTCTAGGAGAGCCCAAGGCCCTGATATTTTAAAATGTCCTCCTCGGCAT
CTCCAGCAAGTTGCCACTGCTGGCGAAGAAAGCGAGGTATAGACAAGGAGCCGAGCTGAAACACTGGCTAGATTCCGGTAGGGGTCTGAG
CCATCACTCCCACCTGGAGGCGCGGTCTCCATTCCTCTGAAGCCCTTTGTGCGGCCCCCTTCCTCACTGAGTTCTGGGCTGCGGCGGCAG
CACTGTGCTCTAGCACTAACTCTGAAGCTGCCAGGGCAGCGTCAGCGGACAGATGAAAAGGTGCGGGGACATGCTGGCTGCCAGCCGGGG
TTCCGCAAGTTCAGGTCTTGGGCGGGGCGTGGAGGGCCAGGCCCCGCCCCTCGAACGACGGCCTTAAGTGTGCGCACGCGCAGGGGGCCG
CGCTTTCTCCGGGCGGCGGCACCGCCCACAGCCTGGGACGTCAGCGGCGCGCGACGTGCTTTGCTGTATAAATGCGGTGGCGCCCGGCGT
AGGGACACTTCGGTCCTGAGCGCTTGGGAGTTAGGTTGTTTGCCGGCGTAGCGGCCAGCGCCTGAGCCCGCCCTTGATCTTCGCTGTGGC
ATGGCGGACGAGGGGAAGTCGTACAGCGGTCCAGTGCACGTGCCAACATTACACTGTCAGGGAAGAAGCGCAGAAAACTCCTCCAGCAGA
TCCGGCTTGCCCAGAAAGAGAAGACAGCCATGGAAGTGGAAGCCCCTTCAAAGCCAGCCAGGACTAGTGAACCACAGCTCAAAAGGCAAA
AGAAGACAAAAGCCCCCCAGGATGTAGAAATGAAGGACCTTGAAGATGAGAGCTAAACCTCTTCCACTAGAAGATTCTCAACTGGAGCCA
GCCTTCAGACTCAGTGGTTGTTTCAGAGGACTTTGACAAAAGCAAGGCCCCTTTTCACTCTCCAGATTTCCTCCTACCTAATGGCCTACT
GACCTCCCCTAGAGGGATGTCTTTGGGAGGGAAGAAGGTACAGAAGAAAGATTGGAGAAGGGCCTCTCTAGCAGTCAACTCCATTTGTAA

>In-frame_ENST00000532297_ENST00000354588_TCGA-VD-AA8S_NXF1_chr11_62572801_-_C11orf48_chr11_62430805_length(amino acids)=124AA_start in transcript=216_stop in transcript=590
MKPFVRPPSSLSSGLRRQHCALALTLKLPGQRQRTDEKVRGHAGCQPGFRKFRSWAGRGGPGPAPRTTALSVRTRRGPRFLRAAAPPTAW

--------------------------------------------------------------
>In-frame_ENST00000532297_ENST00000431002_TCGA-VD-AA8S_NXF1_chr11_62572801_-_C11orf48_chr11_62430805_length(transcript)=1098nt_BP=658nt
ATAGAGACAACAGTCAGGGGCTGGTGGTGGTGCTTTTGGGGGTCTAGGAGAGCCCAAGGCCCTGATATTTTAAAATGTCCTCCTCGGCAT
CTCCAGCAAGTTGCCACTGCTGGCGAAGAAAGCGAGGTATAGACAAGGAGCCGAGCTGAAACACTGGCTAGATTCCGGTAGGGGTCTGAG
CCATCACTCCCACCTGGAGGCGCGGTCTCCATTCCTCTGAAGCCCTTTGTGCGGCCCCCTTCCTCACTGAGTTCTGGGCTGCGGCGGCAG
CACTGTGCTCTAGCACTAACTCTGAAGCTGCCAGGGCAGCGTCAGCGGACAGATGAAAAGGTGCGGGGACATGCTGGCTGCCAGCCGGGG
TTCCGCAAGTTCAGGTCTTGGGCGGGGCGTGGAGGGCCAGGCCCCGCCCCTCGAACGACGGCCTTAAGTGTGCGCACGCGCAGGGGGCCG
CGCTTTCTCCGGGCGGCGGCACCGCCCACAGCCTGGGACGTCAGCGGCGCGCGACGTGCTTTGCTGTATAAATGCGGTGGCGCCCGGCGT
AGGGACACTTCGGTCCTGAGCGCTTGGGAGTTAGGTTGTTTGCCGGCGTAGCGGCCAGCGCCTGAGCCCGCCCTTGATCTTCGCTGTGGC
ATGGCGGACGAGGGGAAGTCGTACAGCGGTCCAGTGCACGTGCCAACATTACACTGTCAGGGAAGAAGCGCAGAAAACTCCTCCAGCAGA
TCCGGCTTGCCCAGAAAGAGAAGACAGCCATGGAAGTGGAAGCCCCTTCAAAGCCAGCCAGGACTAGTGAACCACAGCTCAAAAGGCAAA
AGAAGACAAAAGCCCCCCAGGATGTAGAAATGAAGGACCTTGAAGATGAGAGCTAAACCTCTTCCACTAGAAGATTCTCAACTGGAGCCA
GCCTTCAGACTCAGTGGTTGTTTCAGAGGACTTTGACAAAAGCAAGGCCCCTTTTCACTCTCCAGATTTCCTCCTACCTAATGGCCTACT
GACCTCCCCTAGAGGGATGTCTTTGGGAGGGAAGAAGGTACAGAAGAAAGATTGGAGAAGGGCCTCTCTAGCAGTCAACTCCATTTGTAA

>In-frame_ENST00000532297_ENST00000431002_TCGA-VD-AA8S_NXF1_chr11_62572801_-_C11orf48_chr11_62430805_length(amino acids)=124AA_start in transcript=216_stop in transcript=590
MKPFVRPPSSLSSGLRRQHCALALTLKLPGQRQRTDEKVRGHAGCQPGFRKFRSWAGRGGPGPAPRTTALSVRTRRGPRFLRAAAPPTAW

--------------------------------------------------------------
>In-frame_ENST00000532297_ENST00000532208_TCGA-VD-AA8S_NXF1_chr11_62572801_-_C11orf48_chr11_62430805_length(transcript)=1068nt_BP=658nt
ATAGAGACAACAGTCAGGGGCTGGTGGTGGTGCTTTTGGGGGTCTAGGAGAGCCCAAGGCCCTGATATTTTAAAATGTCCTCCTCGGCAT
CTCCAGCAAGTTGCCACTGCTGGCGAAGAAAGCGAGGTATAGACAAGGAGCCGAGCTGAAACACTGGCTAGATTCCGGTAGGGGTCTGAG
CCATCACTCCCACCTGGAGGCGCGGTCTCCATTCCTCTGAAGCCCTTTGTGCGGCCCCCTTCCTCACTGAGTTCTGGGCTGCGGCGGCAG
CACTGTGCTCTAGCACTAACTCTGAAGCTGCCAGGGCAGCGTCAGCGGACAGATGAAAAGGTGCGGGGACATGCTGGCTGCCAGCCGGGG
TTCCGCAAGTTCAGGTCTTGGGCGGGGCGTGGAGGGCCAGGCCCCGCCCCTCGAACGACGGCCTTAAGTGTGCGCACGCGCAGGGGGCCG
CGCTTTCTCCGGGCGGCGGCACCGCCCACAGCCTGGGACGTCAGCGGCGCGCGACGTGCTTTGCTGTATAAATGCGGTGGCGCCCGGCGT
AGGGACACTTCGGTCCTGAGCGCTTGGGAGTTAGGTTGTTTGCCGGCGTAGCGGCCAGCGCCTGAGCCCGCCCTTGATCTTCGCTGTGGC
ATGGCGGACGAGGGGAAGTCGTACAGCGGTCCAGTGCACGTGCCAACATTACACTGTCAGGGAAGAAGCGCAGAAAACTCCTCCAGCAGA
TCCGGCTTGCCCAGAAAGAGAAGACAGCCATGGAAGTGGAAGCCCCTTCAAAGCCAGCCAGGACTAGTGAACCACAGCTCAAAAGGCAAA
AGAAGACAAAAGCCCCCCAGGATGTAGAAATGAAGGACCTTGAAGATGAGAGCTAAACCTCTTCCACTAGAAGATTCTCAACTGGAGCCA
GCCTTCAGACTCAGTGGTTGTTTCAGAGGACTTTGACAAAAGCAAGGCCCCTTTTCACTCTCCAGATTTCCTCCTACCTAATGGCCTACT

>In-frame_ENST00000532297_ENST00000532208_TCGA-VD-AA8S_NXF1_chr11_62572801_-_C11orf48_chr11_62430805_length(amino acids)=124AA_start in transcript=216_stop in transcript=590
MKPFVRPPSSLSSGLRRQHCALALTLKLPGQRQRTDEKVRGHAGCQPGFRKFRSWAGRGGPGPAPRTTALSVRTRRGPRFLRAAAPPTAW

--------------------------------------------------------------
>In-frame_ENST00000439713_ENST00000354588_TCGA-VD-AA8S_NXF1_chr11_62572801_-_C11orf48_chr11_62430805_length(transcript)=544nt_BP=101nt
GAGCGCTTGGGAGTTAGGTTGTTTGCCGGCGTAGCGGCCAGCGCCTGAGCCCGCCCTTGATCTTCGCTGTGGCATGGCGGACGAGGGGAA
GTCGTACAGCGGTCCAGTGCACGTGCCAACATTACACTGTCAGGGAAGAAGCGCAGAAAACTCCTCCAGCAGATCCGGCTTGCCCAGAAA
GAGAAGACAGCCATGGAAGTGGAAGCCCCTTCAAAGCCAGCCAGGACTAGTGAACCACAGCTCAAAAGGCAAAAGAAGACAAAAGCCCCC
CAGGATGTAGAAATGAAGGACCTTGAAGATGAGAGCTAAACCTCTTCCACTAGAAGATTCTCAACTGGAGCCAGCCTTCAGACTCAGTGG
TTGTTTCAGAGGACTTTGACAAAAGCAAGGCCCCTTTTCACTCTCCAGATTTCCTCCTACCTAATGGCCTACTGACCTCCCCTAGAGGGA
TGTCTTTGGGAGGGAAGAAGGTACAGAAGAAAGATTGGAGAAGGGCCTCTCTAGCAGTCAACTCCATTTGTAATAAAGCCCTAGCACTCT

>In-frame_ENST00000439713_ENST00000354588_TCGA-VD-AA8S_NXF1_chr11_62572801_-_C11orf48_chr11_62430805_length(amino acids)=80AA_start in transcript=66_stop in transcript=308

--------------------------------------------------------------
>In-frame_ENST00000439713_ENST00000431002_TCGA-VD-AA8S_NXF1_chr11_62572801_-_C11orf48_chr11_62430805_length(transcript)=541nt_BP=101nt
GAGCGCTTGGGAGTTAGGTTGTTTGCCGGCGTAGCGGCCAGCGCCTGAGCCCGCCCTTGATCTTCGCTGTGGCATGGCGGACGAGGGGAA
GTCGTACAGCGGTCCAGTGCACGTGCCAACATTACACTGTCAGGGAAGAAGCGCAGAAAACTCCTCCAGCAGATCCGGCTTGCCCAGAAA
GAGAAGACAGCCATGGAAGTGGAAGCCCCTTCAAAGCCAGCCAGGACTAGTGAACCACAGCTCAAAAGGCAAAAGAAGACAAAAGCCCCC
CAGGATGTAGAAATGAAGGACCTTGAAGATGAGAGCTAAACCTCTTCCACTAGAAGATTCTCAACTGGAGCCAGCCTTCAGACTCAGTGG
TTGTTTCAGAGGACTTTGACAAAAGCAAGGCCCCTTTTCACTCTCCAGATTTCCTCCTACCTAATGGCCTACTGACCTCCCCTAGAGGGA
TGTCTTTGGGAGGGAAGAAGGTACAGAAGAAAGATTGGAGAAGGGCCTCTCTAGCAGTCAACTCCATTTGTAATAAAGCCCTAGCACTCT

>In-frame_ENST00000439713_ENST00000431002_TCGA-VD-AA8S_NXF1_chr11_62572801_-_C11orf48_chr11_62430805_length(amino acids)=80AA_start in transcript=66_stop in transcript=308

--------------------------------------------------------------
>In-frame_ENST00000439713_ENST00000532208_TCGA-VD-AA8S_NXF1_chr11_62572801_-_C11orf48_chr11_62430805_length(transcript)=511nt_BP=101nt
GAGCGCTTGGGAGTTAGGTTGTTTGCCGGCGTAGCGGCCAGCGCCTGAGCCCGCCCTTGATCTTCGCTGTGGCATGGCGGACGAGGGGAA
GTCGTACAGCGGTCCAGTGCACGTGCCAACATTACACTGTCAGGGAAGAAGCGCAGAAAACTCCTCCAGCAGATCCGGCTTGCCCAGAAA
GAGAAGACAGCCATGGAAGTGGAAGCCCCTTCAAAGCCAGCCAGGACTAGTGAACCACAGCTCAAAAGGCAAAAGAAGACAAAAGCCCCC
CAGGATGTAGAAATGAAGGACCTTGAAGATGAGAGCTAAACCTCTTCCACTAGAAGATTCTCAACTGGAGCCAGCCTTCAGACTCAGTGG
TTGTTTCAGAGGACTTTGACAAAAGCAAGGCCCCTTTTCACTCTCCAGATTTCCTCCTACCTAATGGCCTACTGACCTCCCCTAGAGGGA

>In-frame_ENST00000439713_ENST00000532208_TCGA-VD-AA8S_NXF1_chr11_62572801_-_C11orf48_chr11_62430805_length(amino acids)=80AA_start in transcript=66_stop in transcript=308

--------------------------------------------------------------

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Fusion Gene PPI Analysis for NXF1-C11orf48


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page.


check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with
HgeneNXF1chr11:62572800chr11:62430805ENST00000294172-1212_1989.333333333333334620.0ALYREF/THOC4 and LUZP4
HgeneNXF1chr11:62572800chr11:62430805ENST00000439713-1102_1989.333333333333334357.0ALYREF/THOC4 and LUZP4
HgeneNXF1chr11:62572800chr11:62430805ENST00000531709-1202_1989.333333333333334380.6666666666667ALYREF/THOC4 and LUZP4
HgeneNXF1chr11:62572800chr11:62430805ENST00000532297-2222_1989.333333333333334620.0ALYREF/THOC4 and LUZP4
HgeneNXF1chr11:62572801chr11:62430805ENST00000294172-1212_1989.333333333333334620.0ALYREF/THOC4 and LUZP4
HgeneNXF1chr11:62572801chr11:62430805ENST00000439713-1102_1989.333333333333334357.0ALYREF/THOC4 and LUZP4
HgeneNXF1chr11:62572801chr11:62430805ENST00000531709-1202_1989.333333333333334380.6666666666667ALYREF/THOC4 and LUZP4
HgeneNXF1chr11:62572801chr11:62430805ENST00000532297-2222_1989.333333333333334620.0ALYREF/THOC4 and LUZP4


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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Related Drugs for NXF1-C11orf48


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.8 2021-05-08)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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Related Diseases for NXF1-C11orf48


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource