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 | Fusion Gene Summary |
| Fusion Gene ORF analysis |
| Fusion Genomic Features |
| Fusion Protein Features |
| Fusion Gene Sequence |
| Fusion Gene PPI analysis |
| Related Drugs |
| Related Diseases |
Fusion gene:ORAOV1-RNF169 (FusionGDB2 ID:61271) |
Fusion Gene Summary for ORAOV1-RNF169 |
 Fusion gene summary |
| Fusion gene information | Fusion gene name: ORAOV1-RNF169 | Fusion gene ID: 61271 | Hgene | Tgene | Gene symbol | ORAOV1 | RNF169 | Gene ID | 220064 | 254225 |
| Gene name | LTO1 maturation factor of ABCE1 | ring finger protein 169 | |
| Synonyms | CIAB1|ORAOV1|TAOS1 | - | |
| Cytomap | 11q13.3 | 11q13.4 | |
| Type of gene | protein-coding | protein-coding | |
| Description | protein LTO1 homologLTO1, ABCE1 maturation factororal cancer overexpressed 1oral cancer overexpressed protein 1-Aoral cancer-overexpressed protein 1tumor-amplified and overexpressed sequence 1 | E3 ubiquitin-protein ligase RNF169RING-type E3 ubiquitin transferase RNF169 | |
| Modification date | 20200313 | 20200313 | |
| UniProtAcc | . | . | |
| Ensembl transtripts involved in fusion gene | ENST00000542515, ENST00000279147, ENST00000536870, ENST00000535657, ENST00000539414, ENST00000542341, | ENST00000299563, | |
| Fusion gene scores | * DoF score | 9 X 7 X 7=441 | 10 X 8 X 5=400 |
| # samples | 9 | 13 | |
| ** MAII score | log2(9/441*10)=-2.29278174922785 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(13/400*10)=-1.62148837674627 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
| Context | PubMed: ORAOV1 [Title/Abstract] AND RNF169 [Title/Abstract] AND fusion [Title/Abstract] | ||
| Most frequent breakpoint | ORAOV1(69482663)-RNF169(74545721), # samples:1 | ||
| Anticipated loss of major functional domain due to fusion event. | ORAOV1-RNF169 seems lost the major protein functional domain in Hgene partner, which is a essential gene due to the frame-shifted ORF. | ||
| * DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
| Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Partner | Gene | GO ID | GO term | PubMed ID |
| Hgene | ORAOV1 | GO:0106035 | protein maturation by [4Fe-4S] cluster transfer | 26182403 |
| Tgene | RNF169 | GO:0006974 | cellular response to DNA damage stimulus | 22733822 |
| Tgene | RNF169 | GO:2000780 | negative regulation of double-strand break repair | 22742833 |
| Fusion gene breakpoints across ORAOV1 (5'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
| Fusion gene breakpoints across RNF169 (3'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
| Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| Source | Disease | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| ChimerDB4 | BRCA | TCGA-BH-A0BD-01A | ORAOV1 | chr11 | 69482663 | - | RNF169 | chr11 | 74545721 | + |
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Fusion Gene ORF analysis for ORAOV1-RNF169 |
| Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| intron-3CDS | ENST00000542515 | ENST00000299563 | ORAOV1 | chr11 | 69482663 | - | RNF169 | chr11 | 74545721 | + |
| Frame-shift | ENST00000279147 | ENST00000299563 | ORAOV1 | chr11 | 69482663 | - | RNF169 | chr11 | 74545721 | + |
| Frame-shift | ENST00000536870 | ENST00000299563 | ORAOV1 | chr11 | 69482663 | - | RNF169 | chr11 | 74545721 | + |
| In-frame | ENST00000535657 | ENST00000299563 | ORAOV1 | chr11 | 69482663 | - | RNF169 | chr11 | 74545721 | + |
| intron-3CDS | ENST00000539414 | ENST00000299563 | ORAOV1 | chr11 | 69482663 | - | RNF169 | chr11 | 74545721 | + |
| intron-3CDS | ENST00000542341 | ENST00000299563 | ORAOV1 | chr11 | 69482663 | - | RNF169 | chr11 | 74545721 | + |
| ORFfinder result based on the fusion transcript sequence of in-frame fusion genes. |
| Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | Seq length (transcript) | BP loci (transcript) | Predicted start (transcript) | Predicted stop (transcript) | Seq length (amino acids) |
| ENST00000535657 | ORAOV1 | chr11 | 69482663 | - | ENST00000299563 | RNF169 | chr11 | 74545721 | + | 7395 | 427 | 536 | 1711 | 391 |
| DeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated. |
| Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | No-coding score | Coding score |
| ENST00000535657 | ENST00000299563 | ORAOV1 | chr11 | 69482663 | - | RNF169 | chr11 | 74545721 | + | 0.002390876 | 0.99760914 |
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Fusion Genomic Features for ORAOV1-RNF169 |
| FusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints. |
| Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | 1-p | p (fusion gene breakpoint) |
| ORAOV1 | chr11 | 69482662 | - | RNF169 | chr11 | 74545720 | + | 9.32E-07 | 0.99999905 |
| ORAOV1 | chr11 | 69482662 | - | RNF169 | chr11 | 74545720 | + | 9.32E-07 | 0.99999905 |
| Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page. |
| Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page. |
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Fusion Protein Features for ORAOV1-RNF169 |
| Go to FGviewer for the breakpoints of chr11:69482663-chr11:74545721 - FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels. |
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| Main function of each fusion partner protein. (from UniProt) |
| Hgene | Tgene |
| . | . |
| FUNCTION: Might normally function as a transcriptional repressor. EWS-fusion-proteins (EFPS) may play a role in the tumorigenic process. They may disturb gene expression by mimicking, or interfering with the normal function of CTD-POLII within the transcription initiation complex. They may also contribute to an aberrant activation of the fusion protein target genes. | FUNCTION: Might normally function as a transcriptional repressor. EWS-fusion-proteins (EFPS) may play a role in the tumorigenic process. They may disturb gene expression by mimicking, or interfering with the normal function of CTD-POLII within the transcription initiation complex. They may also contribute to an aberrant activation of the fusion protein target genes. |
| Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at * Minus value of BPloci means that the break pointn is located before the CDS. |
| - In-frame and retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| Tgene | RNF169 | chr11:69482663 | chr11:74545721 | ENST00000299563 | 3 | 6 | 665_682 | 280.6666666666667 | 709.0 | Motif | Note=MIU motif | |
| Tgene | RNF169 | chr11:69482663 | chr11:74545721 | ENST00000299563 | 3 | 6 | 689_701 | 280.6666666666667 | 709.0 | Motif | Note=LR motif |
| - In-frame and not-retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| Tgene | RNF169 | chr11:69482663 | chr11:74545721 | ENST00000299563 | 3 | 6 | 205_213 | 280.6666666666667 | 709.0 | Motif | Note=UMI motif | |
| Tgene | RNF169 | chr11:69482663 | chr11:74545721 | ENST00000299563 | 3 | 6 | 68_107 | 280.6666666666667 | 709.0 | Zinc finger | RING-type |
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Fusion Gene Sequence for ORAOV1-RNF169 |
| For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones. |
| >In-frame_ENST00000535657_ENST00000299563_TCGA-BH-A0BD-01A_ORAOV1_chr11_69482663_-_RNF169_chr11_74545721_length(transcript)=7395nt_BP=427nt ATTTGTGCCTGAAGCTGCCGGGTCTGCTACGGCACCGCGGGGCTGCAGAAACCCGGGGGCCAAGGGCGGGCTGCTTGCCGCTATGGCTGG CAGTCAGGACATATTCGATGCCATCGTGATGGCGGATGAGAGGTTTCATGGGGAAGGGTATCGGGAAGGCTATGAAGAAGGCAGTAGTTT GGGTGTGATGGAGGGAAGGCAGCATGGCACGCTGCATGGAGCCAAAATCGGGTCTGAGATCGGGTGCTACCAAGGTTTTGCTTTTGCATG GAAATGTCTACTGCACAGTTGCACCACTGAGAAGGACAGCAGAAAGATGAAGGTCTTAGAATCATTGATTGGAATGATCCAGAAATTCCC TTATGATGACCCTACTTACGATAAACTCCATGAAGACTTAGACAAGATCAGAGGAAAATTTAAACAGGAAGCTAAACTCCAAGGTGGAAA GGAGTCAGAGCTGTAGTGACACAGCCCAGGAAAGAGCGAAGAGCAGAGTCAGAGCAGTTCCAGGCAACAAAGCCAAGGTCACAACTATGA CTCCAGCCTCCAACCCCATCATTGGTGTCCTCTTGTCAACTCAAAACAACCGCTGCGTCTCGGCCCCTGACTTAACCATCGAAAAGCGTC TACCCTTCAGCTCCCTTTCATCCTTGGCTTCCCTGCATAAGCCAGAGCGTTCTGTCAGCCCTGAGAGCAATGACAGCATCTCCGAAGAAC TAAACCATTTCAAGCCCATTGTCTGCTCACCATGTACTCCTCCCAAGAGACTCCCTGATGGCCGTGTGCTAAGTCCTCTCATCATCAAAT CAACTCCACGCAACCTAAACAGAAGCCTGCAGAAGCAGACTTCTTATGAGGCCAGTCCACGGATCCTCAAAAAGTGGGAACAGATCTTTC AGGAGCGGCAGATCAAAAAGACCCTTTCAAAAGCCACTCTTACCTCTCTGGCTCCTGAAATGGGGGAAGAGTTACTAGGCTCTGAAGGTA TCCATTCTAGCAAGGAGAAGCCACTTGTGGCTGTAAATACAAGATTATCTGGTGGGCAGGTCCTCTCTGAGTATACTGGACCCACCTCTG CTGATCTTGATCATTTCCCCTCTGTTAGCCAAACAAAAGCAGAACAGGACAGTGATAATAAAAGTAGCACTGAGATCCCACTGGAAACCT GCTGTTCCTCAGAACTCAAAGGGGGAGGCAGTGGGACTTCTTTGGAGAGGGAGCAGTTTGAGGGGTTAGGGTCAACTCCAGATGCCAAGT TAGACAAAACCTGTATAAGCAGAGCCATGAAAATCACCACAGTTAATTCAGTGCTACCCCAAAACAGTGTTTTGGGTGGAGTCCTCAAAA CAAAGCAACAATTGAAGACATTAAATCATTTTGATCTGACTAATGGTGTTCTAGTTGAGAGCCTAAGTGAAGAGCCACTTCCTTCTTTGC GTCGAGGCCGGAAAAGACACTGCAAGACCAAGCACTTAGAACAAAATGGCTCCCTTAAAAAACTGCGACAAACCAGTGGGGAGGTGGGTC TGGCCCCAACAGACCCAGTCCTGCGAGAGATGGAGCAGAAGCTTCAGCAAGAGGAAGAAGACCGACAGTTGGCTCTGCAGTTGCAGCGCA TGTTCGACAATGAGAGGCGGACTGTGAGCCGGCGAAAAGGAAGTGTGGATCAGTATCTCCTACGGTCCAGCAACATGGCCGGGGCCAAGT AGCACCTAATGAAGTGTTACCTATTTTTAAAAGGTCTTAGGCCTTGATCATTTATCCTGAAGAGCTGAGTGTTCTCACTTTGGTTTTATT TTAATGGCAAAACACTGTCTAATATGGTTCTGAGAGGTTCCAGGGCCTTTGTAGTCAATATCCAAGGGAAAAGCATCTCCGTTTCTCTGT GACCCAGGCCAGAAGCCTGAGTGACCCATCCCTAAGGGCTTCTGGGCCAAACCTGGCAGCACCCACTGGGAATGAGATTTGGAACGGCCT CAGGAGCATAATGGCCACAGTTAGTAATGGTAAAGAGGGGATACCTTCTTAAACTGATAGACTTCCTGACTTCTTTCAGCAGGGTATTGT TTTAAATCAGCCTTGCAGATAAAAATTAATTCCATCTTTTTCAGACAAGTGAACAATTTAGTTCCTTGGCAGATCCAAAATGATAGATGG TTATGTTACGCTTTCTGCTGTCCCTTGCCAAAAATAAGTAAATATATCAGTTAAGATTATGCCTTTACAAAAGTTAATTTACATTCTCTG TTTAAAAAATAATATTTGGTGAATGCTATATAGTTGACAGAGCACATTTACAGACCTTATTAATTTAGTCTTTCCAAGAGACCTCTCATG TAACTGGCATTAGCCCCATTTTTAGATGATGAAACTGCAGTGCAGATGTTCTGGTTCTCTCAACTACCAAGTGGCATAACCCATGGATTT TCTAAAGGTTTCCCAAATAGATCACAACCTAAGGGTGTGCCAGGGGAGCCTAGGGGAAGCTAGGCTGGGCATTGAACACTGATAGTGCAG AATCCACATGCAAACAAGATCGACAGGGTGGATAAACATATATGTGCATTATCCCCATCCCCCACAGTTTAGAGCCTTCTGCTTTTCTGG GGGTTTCAGCCTATGAGACAAACTATAATCAGGCTTCATTATTACTTTTCAAATGGCCAAGGGTTATCTGCAATGTTGATCTAAAATCCT AAAAAATCACCCTGAAGTCAGGCAAGGAACAATACTTAAACTCCATACTATGGAAACAAGGTATCTAGCTGGATGCAGCTGGTAAATTCA GTCCCATGGACCTTTGGGGGTTTATTTTCCTTAGCAGCTGACACCATGTGTCTTTTGCATCCCTGGTGGTGCTTGGTGCTTCTGCCCATC TGGGCTCATTGAGAATAGGGATGAAGATATGATTTTAGGGAATTTCTGATGGGCTGGCATGCCCCATGTAGTATGAGTTACTATATAAAG TCATGTGACTGGCATTTTAACAGACCTTCCAGAGCTTATATATCCCAATATATGTTGTTTCCTTTGAGTAGCCCCAGCAGGATACTGCTT AGTTTTTCCAGTGCCATTGGTGAAAGCATTTCTGGAACTGTCTTCAAAGACTAGAAACACTGACTCCCAAAATGCTAGAACTGGAAGGGA CCTTAATGGTTATCTATTCCAGCCTCCTCCTAAGGTCCTCCTCAGCTTCTAGACCTAGAAGCCAAAGTCCAGAACAGTGACCCATTGATC AAGGCAGATAGTATAACTCCTTTTAAGTGTTCTCAGATTTGCCTTTTCTCAGGGCAAATCTTCAGTGTTTTGTGGTTATTTGTGGTTGAG AGAGAGAGAGAATGTAATGTCTGAGACTAGCCAGCAGCTATTTGAAGCCTCTGGGAAAGAAGGTGGCTTATCAAGTGGGTTTGTAGTAAT GAGTGCTGCTGTAAAGCAGAGCCATTTTCTTGTGCAGCTCATAGTTCCCAAACAGTTCCCAAACAGAAATTCCAGAGATGTCTTAAACAT TGTGGTCATCATTGAGATAGGTGGAATCTCTTTGGTGACTACGTTGGTGGGGAACATCACTCACCTGAATGTATGCATTCTGTGTTCTCT GTGTGTGTGCACATATGCAGATGTATGTTTTAAAAACATTTACCAAACTCATGATTTTGTAGTCACACCACTTCAGTTCTGGGCCCTACC AACAATTTATGTCCTCCAAGAGCTGCTGGAGGGCATGTTTGTGCCCAAAACAGAAGAGCTGGCTCTGGTTTACAGAAGACAGGGAGGGTG ACCTTACTATAAATGCCCTTAGAGGAAACTTATCAGTTACTGCCATTTCACGCATTTCCTTTTTGATCTTAGTAAATATTATTGGAAGGC TAGTCTTGTTGGTAGGAGCAAAGACACTTATTTTTCCACTTGCCATCTTTCTCTATATCTCCAGTAATTTGAAAAACACTTTTCAGTTGG AATTGATTTTTGTCTTTGGTAAAAAGAAATATTTTTAATAGATAAAAGATATATATTTTAAATATTTCCCCAAATTAATACTTTCATTTT AAGAATTGCATAGCAGTTGTAACAAGTGCAGAATGAAGAACAAATTCTTGTTAAGCAAATAGTCCAAACTCTAGGTCCAGCTTACTGCCT TCCCCCCTTGTACCTACAGTGATGCCTAGGATGGTATTGACAGTTGTTTTCTAAACTTCCTGCTGAGCAACAGTCCTTCAAATATAGGTA GAGTGGTCTAGGTTAAGGAGGGAGGAGGGTTGATCTTTAATCAGGTTGGCTTTGGAGGAAGGAAAAACCACTAAGGTATTATCTGAATTT TAAGATGCTTCCCATCCTTAATAACTAAAACCTGAATGCTTTTCTTTCTGAAAAATCTCCCTCTCTCCTTCCATGATTCTGAAGTTGGTT AAAAGTCGATATGTTGATGTGTATTATTTGGGGGAACAGAAAAGGACAAGGAAGGAAACAGAACGATGGGAAGGGTTTGTGAGCTAGAAT AAGAGGTGCAGGATTTCACAAAACAAATTCCTCACAAATCATTGAAGCCCAGTTCACCATACAAATTACCCATGTCTTACTCTGTTCCTT GTATATATGCATTCTGGGTTTTTTTATTATTAAAGGGGAAGTTAGGGGGGAGGGTGAAGGTCAGTCTGAGGGGAAATCCAGGAAATGTGG TGCCCTTAGAAGGGGGCTGTCAGCTCTTTTCCATAGAGAGGGAAAGAAACTTTGAGAAAATGTTCTTGACCCATTGATTGTATCTGCTGG AAGAAGTCATCTGGGCCTGTTGGGTTGGTATCAGATCAGGGGATTATGCATCCAGCCCCTGGCCCCTTTAATCTATTTGCCTCTTTTTAA AAAAGGTTAAGTCTTCTTGGGTGAGGCTTGCCAGGGAAACTCCTAAGTGGCTTCACTTATTTTTTAAATTTTAATTTAATTTTTAAATTT TTGCTTGGAAGCAGCACTGGTAATAAATGTTTTATTTTTTGTTCATTTTCCCTAAAGGAAAAATGTCCTTAAGAGATTAAAGCTCTTAAT TGATTACTGTCTGGTTACAAACTGGCAAACTGACTAAAATGGGAAGCTGCCACCGTGCCTGACTCATGTAGCTGATGACCGAAGGCTCAT CCTTTCTTTTCTATTTGACAGACATTTACTGAGCTTCAGACTTGAGCCAACCCTGAGCTGGACTGTGGAGATAAAGCAGTTCCTGCTCTT GAGGAGCTCAATGTCTAATGGAATGCATTTGAATGTATGTGTGGCTGGAGAGTTCATTTATGGTCTTAGGAAAGCCATTTCTGGTCCCAT TTAGAAAACTGACCAGCACCCAGCAAGCTGCATTCTACATTTTAGAGACCCCATTGGTATTTGTGAATTTGATTGCACCACCGCTTTTCC TTTACTAAGTAATGTTATGGAAGGAGAATGAATTTTCTCCTCTAGTGATTACAGGACATTAACATCTCTTCAGAAGCTGCTTTTAGCTTA AGCCCCAAGAAGTGAGGTGGGTTGTGGATCACTGACATGGTCAGGGGAGGCCCACACCTCAATTCAGTAACCACCTAATCTCTCCCCCAA CCTGATCTCTCATCAGAGCTGGCAGCAACTTGGGATTCCTTTCCTTTTTCCTGCCTAACTTTTCATTGAAATGTCTAGTAGGAGAGTGAG AAAAGAGAACAAAGGCTGGGTCACAGTCATAGAATGTTACAGCTGGAATGGGCATGGAAATCATCCAAGTTAAACTTCTTCTCTGCCCCC CGCCCCCACTTTTTTTTTTTTTTTTTTTTAACCAAACGAACTTGTGATCCAGTGCCCTATTTTATAGTGTGGTTTTCCAGGGTCTGAATA AATAATCATTAAAGTTTGACACACGCAGACACACGCACCAATGATGGGGATACCCCCAAATGATTTAGGAGGTTATTTTATTTTAATAGT TTTTTCTTCCTGATTTTTTTCAGTTAGTTAGAGTTAAATGTACCTATAGCCCCTGAATACATGCTCAGGTAGAGAAAGTCTCCATAGTAT AAGTAAGTAATATGAATGTGGAATCTTGGAAAGTGATATATTTTGATTGGAATAATTTTAATTAAATTTAATGATTTTAATTAAGAATTA AAAGCCAGCTAGCCAAATTTTCTTTAAAAATTGGAAACTCATTATGGTCTTAAATTGTCCTCAGGCAGCCTTTTCCTCATCAACCCATAG AGTGGTCTTTTGAACTGGTATCTAAACATACCTGGTTATGAATTCTCAAAAGAGAAAGCAGGTCTGGGGCGGGGTGGTCAGGAGACAGAT TCTAGGGAAAGTGCTGAAGAGATTTTCTTCTGAAGATGATCTAGGAAATGCATCTTTATACATGATTGTTAGCTGCTGTAGCTTTCTGAA GAAGATTGTAGAAAAGAGACTAAGATATATGCAAGGGTCACCAGTTTAGAGATCAGTCAAATTGGAAAAAGTGCCAAGACTGGATGTGCA GATTGTTCTATGTATTATCAGTATTTTTTTCCTCTTAAGAAAAAAATTTACTCTCTCTCCTTTGTGAGTAAATGCCTCCTTAATGCCTTT TAAGTAAGGTGGCAACTTTTAACTGTCATCTTGTGAGAGGCAACCTCAAACTCTAAGCAGACTCCCTCTCTCCCTTTCTGGTGTCTTAAA TCAAGAACTAGTTTGAAGCCAAGGCAAAGCAAGGTTTGTTCATCTTCCTTTCCTGTCATTTAAGGTAAAACAGGCAATGAACTCGCTCTT CAAATACCATAGTTCAAGAGTAGCTGTTGGCCCTGGTTCCAGATTAATATAGCAGCAGGCAGATTGCCCCTTCTTGGGGCCACCACCCTC CAAAGCTGTGCCACCAATGAGAGCATTGGGTTCAAGTTTGCATCAAACATGGTATTACCAACGCTGAGCCTCCAGCAGAGCACTTAAAAG TCCTAGTGAGAGAATAGATACTATGCAAGGGAAAAAAATTTAAATGCCAACGAATAGTTTTTTTTTTTTTGAACCTGATACACTGTTTGT TTACTCTCAACTCTTTGTACAAATATTATTGTCCTAAGGGCCTTTTCCCCTCCTGCCTAGAAAATAGGTTGTGTATTGGTTTTATTCAAC CTGCTGTCTGCTTTAGGATTGGAGAAGGTACCTGGATCCTTGTGGACTGCCACTGCTGGCTGCCTCCTCTCCAACTCATCAGAAGAGCAT TTTGACAAAGACAGAGGACTTGGACCAGGGCATGCCCTGTTGGGGATGTTTCTGTCAGCAAGGACATGGCATGGAATCAAGTGGGCTGAT GTGTTGTTATTTAAACAGTACCAAAGTGCATTCTTCAATGTATGTTTGCCTGCTTGAAGCAAGGCCCAAGTTGAGAATACAGTAAAGGAA >In-frame_ENST00000535657_ENST00000299563_TCGA-BH-A0BD-01A_ORAOV1_chr11_69482663_-_RNF169_chr11_74545721_length(amino acids)=391AA_start in transcript=536_stop in transcript=1711 MTPASNPIIGVLLSTQNNRCVSAPDLTIEKRLPFSSLSSLASLHKPERSVSPESNDSISEELNHFKPIVCSPCTPPKRLPDGRVLSPLII KSTPRNLNRSLQKQTSYEASPRILKKWEQIFQERQIKKTLSKATLTSLAPEMGEELLGSEGIHSSKEKPLVAVNTRLSGGQVLSEYTGPT SADLDHFPSVSQTKAEQDSDNKSSTEIPLETCCSSELKGGGSGTSLEREQFEGLGSTPDAKLDKTCISRAMKITTVNSVLPQNSVLGGVL KTKQQLKTLNHFDLTNGVLVESLSEEPLPSLRRGRKRHCKTKHLEQNGSLKKLRQTSGEVGLAPTDPVLREMEQKLQQEEEDRQLALQLQ -------------------------------------------------------------- |
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Fusion Gene PPI Analysis for ORAOV1-RNF169 |
| Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in |
| Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
| Hgene | Hgene's interactors | Tgene | Tgene's interactors |
| - Retained PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
| - Lost PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
| - Retained PPIs, but lost function due to frame-shift fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Related Drugs for ORAOV1-RNF169 |
| Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.8 2021-05-08) |
| Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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Related Diseases for ORAOV1-RNF169 |
| Diseases associated with fusion partners. (DisGeNet 4.0) |
| Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
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