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Fusion Gene Summary | |
Fusion Gene ORF analysis | |
Fusion Genomic Features | |
Fusion Protein Features | |
Fusion Gene Sequence | |
Fusion Gene PPI analysis | |
Related Drugs | |
Related Diseases |
Fusion gene:OSBP2-MRPL43 (FusionGDB2 ID:61361) |
Fusion Gene Summary for OSBP2-MRPL43 |
Fusion gene summary |
Fusion gene information | Fusion gene name: OSBP2-MRPL43 | Fusion gene ID: 61361 | Hgene | Tgene | Gene symbol | OSBP2 | MRPL43 | Gene ID | 23762 | 84545 |
Gene name | oxysterol binding protein 2 | mitochondrial ribosomal protein L43 | |
Synonyms | HLM|ORP-4|ORP4|OSBPL1|OSBPL4 | L43mt|MRP-L43|bMRP36a | |
Cytomap | 22q12.2 | 10q24.31 | |
Type of gene | protein-coding | protein-coding | |
Description | oxysterol-binding protein 2OSBP-related protein 4oxysterol binding protein-like 1oxysterol-binding protein-related protein 4 | 39S ribosomal protein L43, mitochondrialmitochondrial large ribosomal subunit protein mL43mitochondrial ribosomal protein bMRP36a | |
Modification date | 20200313 | 20200320 | |
UniProtAcc | . | Q8N983 | |
Ensembl transtripts involved in fusion gene | ENST00000403222, ENST00000407373, ENST00000332585, ENST00000382310, ENST00000446658, ENST00000401475, ENST00000437268, ENST00000535268, ENST00000496575, | ENST00000318325, ENST00000370241, ENST00000370242, ENST00000299179, ENST00000342071, ENST00000370236, ENST00000493646, ENST00000477279, ENST00000318364, ENST00000370234, | |
Fusion gene scores | * DoF score | 18 X 13 X 7=1638 | 1 X 1 X 1=1 |
# samples | 18 | 1 | |
** MAII score | log2(18/1638*10)=-3.18586654531133 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(1/1*10)=3.32192809488736 | |
Context | PubMed: OSBP2 [Title/Abstract] AND MRPL43 [Title/Abstract] AND fusion [Title/Abstract] | ||
Most frequent breakpoint | OSBP2(31137356)-MRPL43(102743574), # samples:3 | ||
Anticipated loss of major functional domain due to fusion event. | OSBP2-MRPL43 seems lost the major protein functional domain in Tgene partner, which is a essential gene due to the frame-shifted ORF. |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
Partner | Gene | GO ID | GO term | PubMed ID |
Fusion gene breakpoints across OSBP2 (5'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
Fusion gene breakpoints across MRPL43 (3'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Source | Disease | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
ChimerDB4 | SKCM | TCGA-EB-A42Z-01A | OSBP2 | chr22 | 31137356 | + | MRPL43 | chr10 | 102743574 | - |
ChimerDB4 | SKCM | TCGA-EB-A42Z-01A | OSBP2 | chr22 | 31137356 | + | MRPL43 | chr10 | 102743574 | - |
ChimerDB4 | SKCM | TCGA-EB-A42Z-01A | OSBP2 | chr22 | 31137356 | - | MRPL43 | chr10 | 102743574 | - |
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Fusion Gene ORF analysis for OSBP2-MRPL43 |
Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
Frame-shift | ENST00000403222 | ENST00000318325 | OSBP2 | chr22 | 31137356 | + | MRPL43 | chr10 | 102743574 | - |
Frame-shift | ENST00000403222 | ENST00000370241 | OSBP2 | chr22 | 31137356 | + | MRPL43 | chr10 | 102743574 | - |
In-frame | ENST00000403222 | ENST00000370242 | OSBP2 | chr22 | 31137356 | + | MRPL43 | chr10 | 102743574 | - |
Frame-shift | ENST00000403222 | ENST00000299179 | OSBP2 | chr22 | 31137356 | + | MRPL43 | chr10 | 102743574 | - |
In-frame | ENST00000403222 | ENST00000342071 | OSBP2 | chr22 | 31137356 | + | MRPL43 | chr10 | 102743574 | - |
5CDS-intron | ENST00000403222 | ENST00000370236 | OSBP2 | chr22 | 31137356 | + | MRPL43 | chr10 | 102743574 | - |
5CDS-intron | ENST00000403222 | ENST00000493646 | OSBP2 | chr22 | 31137356 | + | MRPL43 | chr10 | 102743574 | - |
5CDS-intron | ENST00000403222 | ENST00000477279 | OSBP2 | chr22 | 31137356 | + | MRPL43 | chr10 | 102743574 | - |
5CDS-intron | ENST00000403222 | ENST00000318364 | OSBP2 | chr22 | 31137356 | + | MRPL43 | chr10 | 102743574 | - |
5CDS-intron | ENST00000403222 | ENST00000370234 | OSBP2 | chr22 | 31137356 | + | MRPL43 | chr10 | 102743574 | - |
Frame-shift | ENST00000407373 | ENST00000318325 | OSBP2 | chr22 | 31137356 | + | MRPL43 | chr10 | 102743574 | - |
Frame-shift | ENST00000407373 | ENST00000370241 | OSBP2 | chr22 | 31137356 | + | MRPL43 | chr10 | 102743574 | - |
In-frame | ENST00000407373 | ENST00000370242 | OSBP2 | chr22 | 31137356 | + | MRPL43 | chr10 | 102743574 | - |
Frame-shift | ENST00000407373 | ENST00000299179 | OSBP2 | chr22 | 31137356 | + | MRPL43 | chr10 | 102743574 | - |
In-frame | ENST00000407373 | ENST00000342071 | OSBP2 | chr22 | 31137356 | + | MRPL43 | chr10 | 102743574 | - |
5CDS-intron | ENST00000407373 | ENST00000370236 | OSBP2 | chr22 | 31137356 | + | MRPL43 | chr10 | 102743574 | - |
5CDS-intron | ENST00000407373 | ENST00000493646 | OSBP2 | chr22 | 31137356 | + | MRPL43 | chr10 | 102743574 | - |
5CDS-intron | ENST00000407373 | ENST00000477279 | OSBP2 | chr22 | 31137356 | + | MRPL43 | chr10 | 102743574 | - |
5CDS-intron | ENST00000407373 | ENST00000318364 | OSBP2 | chr22 | 31137356 | + | MRPL43 | chr10 | 102743574 | - |
5CDS-intron | ENST00000407373 | ENST00000370234 | OSBP2 | chr22 | 31137356 | + | MRPL43 | chr10 | 102743574 | - |
Frame-shift | ENST00000332585 | ENST00000318325 | OSBP2 | chr22 | 31137356 | + | MRPL43 | chr10 | 102743574 | - |
Frame-shift | ENST00000332585 | ENST00000370241 | OSBP2 | chr22 | 31137356 | + | MRPL43 | chr10 | 102743574 | - |
In-frame | ENST00000332585 | ENST00000370242 | OSBP2 | chr22 | 31137356 | + | MRPL43 | chr10 | 102743574 | - |
Frame-shift | ENST00000332585 | ENST00000299179 | OSBP2 | chr22 | 31137356 | + | MRPL43 | chr10 | 102743574 | - |
In-frame | ENST00000332585 | ENST00000342071 | OSBP2 | chr22 | 31137356 | + | MRPL43 | chr10 | 102743574 | - |
5CDS-intron | ENST00000332585 | ENST00000370236 | OSBP2 | chr22 | 31137356 | + | MRPL43 | chr10 | 102743574 | - |
5CDS-intron | ENST00000332585 | ENST00000493646 | OSBP2 | chr22 | 31137356 | + | MRPL43 | chr10 | 102743574 | - |
5CDS-intron | ENST00000332585 | ENST00000477279 | OSBP2 | chr22 | 31137356 | + | MRPL43 | chr10 | 102743574 | - |
5CDS-intron | ENST00000332585 | ENST00000318364 | OSBP2 | chr22 | 31137356 | + | MRPL43 | chr10 | 102743574 | - |
5CDS-intron | ENST00000332585 | ENST00000370234 | OSBP2 | chr22 | 31137356 | + | MRPL43 | chr10 | 102743574 | - |
Frame-shift | ENST00000382310 | ENST00000318325 | OSBP2 | chr22 | 31137356 | + | MRPL43 | chr10 | 102743574 | - |
Frame-shift | ENST00000382310 | ENST00000370241 | OSBP2 | chr22 | 31137356 | + | MRPL43 | chr10 | 102743574 | - |
In-frame | ENST00000382310 | ENST00000370242 | OSBP2 | chr22 | 31137356 | + | MRPL43 | chr10 | 102743574 | - |
Frame-shift | ENST00000382310 | ENST00000299179 | OSBP2 | chr22 | 31137356 | + | MRPL43 | chr10 | 102743574 | - |
In-frame | ENST00000382310 | ENST00000342071 | OSBP2 | chr22 | 31137356 | + | MRPL43 | chr10 | 102743574 | - |
5CDS-intron | ENST00000382310 | ENST00000370236 | OSBP2 | chr22 | 31137356 | + | MRPL43 | chr10 | 102743574 | - |
5CDS-intron | ENST00000382310 | ENST00000493646 | OSBP2 | chr22 | 31137356 | + | MRPL43 | chr10 | 102743574 | - |
5CDS-intron | ENST00000382310 | ENST00000477279 | OSBP2 | chr22 | 31137356 | + | MRPL43 | chr10 | 102743574 | - |
5CDS-intron | ENST00000382310 | ENST00000318364 | OSBP2 | chr22 | 31137356 | + | MRPL43 | chr10 | 102743574 | - |
5CDS-intron | ENST00000382310 | ENST00000370234 | OSBP2 | chr22 | 31137356 | + | MRPL43 | chr10 | 102743574 | - |
Frame-shift | ENST00000446658 | ENST00000318325 | OSBP2 | chr22 | 31137356 | + | MRPL43 | chr10 | 102743574 | - |
Frame-shift | ENST00000446658 | ENST00000370241 | OSBP2 | chr22 | 31137356 | + | MRPL43 | chr10 | 102743574 | - |
In-frame | ENST00000446658 | ENST00000370242 | OSBP2 | chr22 | 31137356 | + | MRPL43 | chr10 | 102743574 | - |
Frame-shift | ENST00000446658 | ENST00000299179 | OSBP2 | chr22 | 31137356 | + | MRPL43 | chr10 | 102743574 | - |
In-frame | ENST00000446658 | ENST00000342071 | OSBP2 | chr22 | 31137356 | + | MRPL43 | chr10 | 102743574 | - |
5CDS-intron | ENST00000446658 | ENST00000370236 | OSBP2 | chr22 | 31137356 | + | MRPL43 | chr10 | 102743574 | - |
5CDS-intron | ENST00000446658 | ENST00000493646 | OSBP2 | chr22 | 31137356 | + | MRPL43 | chr10 | 102743574 | - |
5CDS-intron | ENST00000446658 | ENST00000477279 | OSBP2 | chr22 | 31137356 | + | MRPL43 | chr10 | 102743574 | - |
5CDS-intron | ENST00000446658 | ENST00000318364 | OSBP2 | chr22 | 31137356 | + | MRPL43 | chr10 | 102743574 | - |
5CDS-intron | ENST00000446658 | ENST00000370234 | OSBP2 | chr22 | 31137356 | + | MRPL43 | chr10 | 102743574 | - |
intron-3CDS | ENST00000401475 | ENST00000318325 | OSBP2 | chr22 | 31137356 | + | MRPL43 | chr10 | 102743574 | - |
intron-3CDS | ENST00000401475 | ENST00000370241 | OSBP2 | chr22 | 31137356 | + | MRPL43 | chr10 | 102743574 | - |
intron-3CDS | ENST00000401475 | ENST00000370242 | OSBP2 | chr22 | 31137356 | + | MRPL43 | chr10 | 102743574 | - |
intron-3CDS | ENST00000401475 | ENST00000299179 | OSBP2 | chr22 | 31137356 | + | MRPL43 | chr10 | 102743574 | - |
intron-3CDS | ENST00000401475 | ENST00000342071 | OSBP2 | chr22 | 31137356 | + | MRPL43 | chr10 | 102743574 | - |
intron-intron | ENST00000401475 | ENST00000370236 | OSBP2 | chr22 | 31137356 | + | MRPL43 | chr10 | 102743574 | - |
intron-intron | ENST00000401475 | ENST00000493646 | OSBP2 | chr22 | 31137356 | + | MRPL43 | chr10 | 102743574 | - |
intron-intron | ENST00000401475 | ENST00000477279 | OSBP2 | chr22 | 31137356 | + | MRPL43 | chr10 | 102743574 | - |
intron-intron | ENST00000401475 | ENST00000318364 | OSBP2 | chr22 | 31137356 | + | MRPL43 | chr10 | 102743574 | - |
intron-intron | ENST00000401475 | ENST00000370234 | OSBP2 | chr22 | 31137356 | + | MRPL43 | chr10 | 102743574 | - |
intron-3CDS | ENST00000437268 | ENST00000318325 | OSBP2 | chr22 | 31137356 | + | MRPL43 | chr10 | 102743574 | - |
intron-3CDS | ENST00000437268 | ENST00000370241 | OSBP2 | chr22 | 31137356 | + | MRPL43 | chr10 | 102743574 | - |
intron-3CDS | ENST00000437268 | ENST00000370242 | OSBP2 | chr22 | 31137356 | + | MRPL43 | chr10 | 102743574 | - |
intron-3CDS | ENST00000437268 | ENST00000299179 | OSBP2 | chr22 | 31137356 | + | MRPL43 | chr10 | 102743574 | - |
intron-3CDS | ENST00000437268 | ENST00000342071 | OSBP2 | chr22 | 31137356 | + | MRPL43 | chr10 | 102743574 | - |
intron-intron | ENST00000437268 | ENST00000370236 | OSBP2 | chr22 | 31137356 | + | MRPL43 | chr10 | 102743574 | - |
intron-intron | ENST00000437268 | ENST00000493646 | OSBP2 | chr22 | 31137356 | + | MRPL43 | chr10 | 102743574 | - |
intron-intron | ENST00000437268 | ENST00000477279 | OSBP2 | chr22 | 31137356 | + | MRPL43 | chr10 | 102743574 | - |
intron-intron | ENST00000437268 | ENST00000318364 | OSBP2 | chr22 | 31137356 | + | MRPL43 | chr10 | 102743574 | - |
intron-intron | ENST00000437268 | ENST00000370234 | OSBP2 | chr22 | 31137356 | + | MRPL43 | chr10 | 102743574 | - |
intron-3CDS | ENST00000535268 | ENST00000318325 | OSBP2 | chr22 | 31137356 | + | MRPL43 | chr10 | 102743574 | - |
intron-3CDS | ENST00000535268 | ENST00000370241 | OSBP2 | chr22 | 31137356 | + | MRPL43 | chr10 | 102743574 | - |
intron-3CDS | ENST00000535268 | ENST00000370242 | OSBP2 | chr22 | 31137356 | + | MRPL43 | chr10 | 102743574 | - |
intron-3CDS | ENST00000535268 | ENST00000299179 | OSBP2 | chr22 | 31137356 | + | MRPL43 | chr10 | 102743574 | - |
intron-3CDS | ENST00000535268 | ENST00000342071 | OSBP2 | chr22 | 31137356 | + | MRPL43 | chr10 | 102743574 | - |
intron-intron | ENST00000535268 | ENST00000370236 | OSBP2 | chr22 | 31137356 | + | MRPL43 | chr10 | 102743574 | - |
intron-intron | ENST00000535268 | ENST00000493646 | OSBP2 | chr22 | 31137356 | + | MRPL43 | chr10 | 102743574 | - |
intron-intron | ENST00000535268 | ENST00000477279 | OSBP2 | chr22 | 31137356 | + | MRPL43 | chr10 | 102743574 | - |
intron-intron | ENST00000535268 | ENST00000318364 | OSBP2 | chr22 | 31137356 | + | MRPL43 | chr10 | 102743574 | - |
intron-intron | ENST00000535268 | ENST00000370234 | OSBP2 | chr22 | 31137356 | + | MRPL43 | chr10 | 102743574 | - |
intron-3CDS | ENST00000496575 | ENST00000318325 | OSBP2 | chr22 | 31137356 | + | MRPL43 | chr10 | 102743574 | - |
intron-3CDS | ENST00000496575 | ENST00000370241 | OSBP2 | chr22 | 31137356 | + | MRPL43 | chr10 | 102743574 | - |
intron-3CDS | ENST00000496575 | ENST00000370242 | OSBP2 | chr22 | 31137356 | + | MRPL43 | chr10 | 102743574 | - |
intron-3CDS | ENST00000496575 | ENST00000299179 | OSBP2 | chr22 | 31137356 | + | MRPL43 | chr10 | 102743574 | - |
intron-3CDS | ENST00000496575 | ENST00000342071 | OSBP2 | chr22 | 31137356 | + | MRPL43 | chr10 | 102743574 | - |
intron-intron | ENST00000496575 | ENST00000370236 | OSBP2 | chr22 | 31137356 | + | MRPL43 | chr10 | 102743574 | - |
intron-intron | ENST00000496575 | ENST00000493646 | OSBP2 | chr22 | 31137356 | + | MRPL43 | chr10 | 102743574 | - |
intron-intron | ENST00000496575 | ENST00000477279 | OSBP2 | chr22 | 31137356 | + | MRPL43 | chr10 | 102743574 | - |
intron-intron | ENST00000496575 | ENST00000318364 | OSBP2 | chr22 | 31137356 | + | MRPL43 | chr10 | 102743574 | - |
intron-intron | ENST00000496575 | ENST00000370234 | OSBP2 | chr22 | 31137356 | + | MRPL43 | chr10 | 102743574 | - |
ORFfinder result based on the fusion transcript sequence of in-frame fusion genes. |
Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | Seq length (transcript) | BP loci (transcript) | Predicted start (transcript) | Predicted stop (transcript) | Seq length (amino acids) |
ENST00000403222 | OSBP2 | chr22 | 31137356 | + | ENST00000370242 | MRPL43 | chr10 | 102743574 | - | 875 | 637 | 144 | 830 | 228 |
ENST00000403222 | OSBP2 | chr22 | 31137356 | + | ENST00000342071 | MRPL43 | chr10 | 102743574 | - | 867 | 637 | 144 | 752 | 202 |
ENST00000407373 | OSBP2 | chr22 | 31137356 | + | ENST00000370242 | MRPL43 | chr10 | 102743574 | - | 716 | 478 | 144 | 671 | 175 |
ENST00000407373 | OSBP2 | chr22 | 31137356 | + | ENST00000342071 | MRPL43 | chr10 | 102743574 | - | 708 | 478 | 144 | 593 | 149 |
ENST00000332585 | OSBP2 | chr22 | 31137356 | + | ENST00000370242 | MRPL43 | chr10 | 102743574 | - | 1195 | 957 | 53 | 1150 | 365 |
ENST00000332585 | OSBP2 | chr22 | 31137356 | + | ENST00000342071 | MRPL43 | chr10 | 102743574 | - | 1187 | 957 | 53 | 1072 | 339 |
ENST00000382310 | OSBP2 | chr22 | 31137356 | + | ENST00000370242 | MRPL43 | chr10 | 102743574 | - | 1127 | 889 | 36 | 1082 | 348 |
ENST00000382310 | OSBP2 | chr22 | 31137356 | + | ENST00000342071 | MRPL43 | chr10 | 102743574 | - | 1119 | 889 | 36 | 1004 | 322 |
ENST00000446658 | OSBP2 | chr22 | 31137356 | + | ENST00000370242 | MRPL43 | chr10 | 102743574 | - | 1112 | 874 | 21 | 1067 | 348 |
ENST00000446658 | OSBP2 | chr22 | 31137356 | + | ENST00000342071 | MRPL43 | chr10 | 102743574 | - | 1104 | 874 | 21 | 989 | 322 |
DeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated. |
Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | No-coding score | Coding score |
ENST00000403222 | ENST00000370242 | OSBP2 | chr22 | 31137356 | + | MRPL43 | chr10 | 102743574 | - | 0.10448219 | 0.89551777 |
ENST00000403222 | ENST00000342071 | OSBP2 | chr22 | 31137356 | + | MRPL43 | chr10 | 102743574 | - | 0.29701552 | 0.7029845 |
ENST00000407373 | ENST00000370242 | OSBP2 | chr22 | 31137356 | + | MRPL43 | chr10 | 102743574 | - | 0.09268501 | 0.907315 |
ENST00000407373 | ENST00000342071 | OSBP2 | chr22 | 31137356 | + | MRPL43 | chr10 | 102743574 | - | 0.34145835 | 0.6585417 |
ENST00000332585 | ENST00000370242 | OSBP2 | chr22 | 31137356 | + | MRPL43 | chr10 | 102743574 | - | 0.1612897 | 0.8387103 |
ENST00000332585 | ENST00000342071 | OSBP2 | chr22 | 31137356 | + | MRPL43 | chr10 | 102743574 | - | 0.26878914 | 0.7312108 |
ENST00000382310 | ENST00000370242 | OSBP2 | chr22 | 31137356 | + | MRPL43 | chr10 | 102743574 | - | 0.15335731 | 0.8466426 |
ENST00000382310 | ENST00000342071 | OSBP2 | chr22 | 31137356 | + | MRPL43 | chr10 | 102743574 | - | 0.25565603 | 0.744344 |
ENST00000446658 | ENST00000370242 | OSBP2 | chr22 | 31137356 | + | MRPL43 | chr10 | 102743574 | - | 0.16163166 | 0.83836836 |
ENST00000446658 | ENST00000342071 | OSBP2 | chr22 | 31137356 | + | MRPL43 | chr10 | 102743574 | - | 0.26663306 | 0.73336697 |
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Fusion Genomic Features for OSBP2-MRPL43 |
FusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints. |
Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | 1-p | p (fusion gene breakpoint) |
Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page. |
Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page. |
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Fusion Protein Features for OSBP2-MRPL43 |
Go to FGviewer for the breakpoints of chr22:31137356-chr10:102743574 - FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels. |
Main function of each fusion partner protein. (from UniProt) |
Hgene | Tgene |
. | MRPL43 |
FUNCTION: Might normally function as a transcriptional repressor. EWS-fusion-proteins (EFPS) may play a role in the tumorigenic process. They may disturb gene expression by mimicking, or interfering with the normal function of CTD-POLII within the transcription initiation complex. They may also contribute to an aberrant activation of the fusion protein target genes. |
Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | OSBP2 | chr22:31137356 | chr10:102743574 | ENST00000332585 | + | 2 | 14 | 182_274 | 284.3333333333333 | 917.0 | Domain | PH |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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Fusion Gene Sequence for OSBP2-MRPL43 |
For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones. |
>In-frame_ENST00000403222_ENST00000370242_TCGA-EB-A42Z-01A_OSBP2_chr22_31137356_+_MRPL43_chr10_102743574_length(transcript)=875nt_BP=637nt CATGGTGAAACCCCGTTTCTACTAAAAATACAAAATTTAGCTGGGCATGGTGCGGGCCGTGGAATTCCAGCTACTAGGGAGGCCAAGGCA GGAGAATCGCTTGAACCTGGGAAGCGGAGGCTGCAGTGAACCAAGATCACGCCACTGCATTCCAGCCTGGGCTACCGAGTGAGACTCAGT CTCAAAAAGGAAAAAAAAAAAAAGCGGAAAAAAAAATTCGCTGATGTTTTAACCATTCTGGGGTCACAGCCTCCTTTGTTATGGACCTAC TCTGGAAAAATGCACAGACAGAGAACCCGAACGATGTCGTCACTGGCAGCGAAGCGCCTTGGCATGAACCGTAGGCCAGCTGGCTCAGGA GGTGGAGGCGGTGAGGCGGCCACTTGGGGCCACCGCTTCTGGCGGCCGCAGGAGCGACCCACAGACAGAAATCAGGGTGAAATGGCCCAC ACGTGCCGTGGAACCATCAACCTGTCCACCGCGCACATTGACACGGAGGACTCTTGTGGTATCTTGCTGACCAGTGGGGCCAGGAGCTAC CACCTCAAGGCCAGCTCAGAGGTGGACCGGCAGCAGTGGATCACCGCCCTGGAGCTGGCCAAGGCCAAGGCTGTCCGCGTGATGAACACT CATTCAGGACACTGGCCTGAGACTGTCTGCAGTTGCACCGCAGATCCTCCTGCCCGGCTGGCCCGACCCACCAGACCTCCCCACAGTGGA TCCTATCTCATCCTCATTGACCTCTGCTCCAGCCCCTATGCTGTCCGCAGTTTCTTGCCTCCCGATTGTCCCTGCACTGACCACTGTGTG >In-frame_ENST00000403222_ENST00000370242_TCGA-EB-A42Z-01A_OSBP2_chr22_31137356_+_MRPL43_chr10_102743574_length(amino acids)=228AA_start in transcript=144_stop in transcript=830 MHSSLGYRVRLSLKKEKKKKRKKKFADVLTILGSQPPLLWTYSGKMHRQRTRTMSSLAAKRLGMNRRPAGSGGGGGEAATWGHRFWRPQE RPTDRNQGEMAHTCRGTINLSTAHIDTEDSCGILLTSGARSYHLKASSEVDRQQWITALELAKAKAVRVMNTHSGHWPETVCSCTADPPA -------------------------------------------------------------- >In-frame_ENST00000403222_ENST00000342071_TCGA-EB-A42Z-01A_OSBP2_chr22_31137356_+_MRPL43_chr10_102743574_length(transcript)=867nt_BP=637nt CATGGTGAAACCCCGTTTCTACTAAAAATACAAAATTTAGCTGGGCATGGTGCGGGCCGTGGAATTCCAGCTACTAGGGAGGCCAAGGCA GGAGAATCGCTTGAACCTGGGAAGCGGAGGCTGCAGTGAACCAAGATCACGCCACTGCATTCCAGCCTGGGCTACCGAGTGAGACTCAGT CTCAAAAAGGAAAAAAAAAAAAAGCGGAAAAAAAAATTCGCTGATGTTTTAACCATTCTGGGGTCACAGCCTCCTTTGTTATGGACCTAC TCTGGAAAAATGCACAGACAGAGAACCCGAACGATGTCGTCACTGGCAGCGAAGCGCCTTGGCATGAACCGTAGGCCAGCTGGCTCAGGA GGTGGAGGCGGTGAGGCGGCCACTTGGGGCCACCGCTTCTGGCGGCCGCAGGAGCGACCCACAGACAGAAATCAGGGTGAAATGGCCCAC ACGTGCCGTGGAACCATCAACCTGTCCACCGCGCACATTGACACGGAGGACTCTTGTGGTATCTTGCTGACCAGTGGGGCCAGGAGCTAC CACCTCAAGGCCAGCTCAGAGGTGGACCGGCAGCAGTGGATCACCGCCCTGGAGCTGGCCAAGGCCAAGGCTGTCCGCGTGATGAACACT CATTCAGGACACTGGCCTGAGACTGTCTGCAGTTGCACCGCAGATCCTCCTGCCCGGCTGGCCCGACCCAATATCAGTTCAGTCATCCGA TCTTCCTTGGGGAAATACCCATTACCGTCCTGAACCCTTGTCATCCACTACTTGGCTATAAGCTCCAGAAGTGACAAGACACTTCACATC >In-frame_ENST00000403222_ENST00000342071_TCGA-EB-A42Z-01A_OSBP2_chr22_31137356_+_MRPL43_chr10_102743574_length(amino acids)=202AA_start in transcript=144_stop in transcript=752 MHSSLGYRVRLSLKKEKKKKRKKKFADVLTILGSQPPLLWTYSGKMHRQRTRTMSSLAAKRLGMNRRPAGSGGGGGEAATWGHRFWRPQE RPTDRNQGEMAHTCRGTINLSTAHIDTEDSCGILLTSGARSYHLKASSEVDRQQWITALELAKAKAVRVMNTHSGHWPETVCSCTADPPA -------------------------------------------------------------- >In-frame_ENST00000407373_ENST00000370242_TCGA-EB-A42Z-01A_OSBP2_chr22_31137356_+_MRPL43_chr10_102743574_length(transcript)=716nt_BP=478nt AACCTCTGCGGAAGCCTCACAGACTGCCAGCCTACCCAGGGATCCCGGGAGGTCCAAGTTCAGAATCCCACTTTGAGATGTTTCTTGTAC TAAAACGCTTGGTTTACAAAAAGTCTTCCCCTATTTGTTTAGAGAACCCGAACGATGTCGTCACTGGCAGCGAAGCGCCTTGGCATGAAC CGTAGGCCAGCTGGCTCAGGAGGTGGAGGCGGTGAGGCGGCCACTTGGGGCCACCGCTTCTGGCGGCCGCAGGAGCGACCCACAGACAGA AATCAGGGTGAAATGGCCCACACGTGCCGTGGAACCATCAACCTGTCCACCGCGCACATTGACACGGAGGACTCTTGTGGTATCTTGCTG ACCAGTGGGGCCAGGAGCTACCACCTCAAGGCCAGCTCAGAGGTGGACCGGCAGCAGTGGATCACCGCCCTGGAGCTGGCCAAGGCCAAG GCTGTCCGCGTGATGAACACTCATTCAGGACACTGGCCTGAGACTGTCTGCAGTTGCACCGCAGATCCTCCTGCCCGGCTGGCCCGACCC ACCAGACCTCCCCACAGTGGATCCTATCTCATCCTCATTGACCTCTGCTCCAGCCCCTATGCTGTCCGCAGTTTCTTGCCTCCCGATTGT >In-frame_ENST00000407373_ENST00000370242_TCGA-EB-A42Z-01A_OSBP2_chr22_31137356_+_MRPL43_chr10_102743574_length(amino acids)=175AA_start in transcript=144_stop in transcript=671 MSSLAAKRLGMNRRPAGSGGGGGEAATWGHRFWRPQERPTDRNQGEMAHTCRGTINLSTAHIDTEDSCGILLTSGARSYHLKASSEVDRQ -------------------------------------------------------------- >In-frame_ENST00000407373_ENST00000342071_TCGA-EB-A42Z-01A_OSBP2_chr22_31137356_+_MRPL43_chr10_102743574_length(transcript)=708nt_BP=478nt AACCTCTGCGGAAGCCTCACAGACTGCCAGCCTACCCAGGGATCCCGGGAGGTCCAAGTTCAGAATCCCACTTTGAGATGTTTCTTGTAC TAAAACGCTTGGTTTACAAAAAGTCTTCCCCTATTTGTTTAGAGAACCCGAACGATGTCGTCACTGGCAGCGAAGCGCCTTGGCATGAAC CGTAGGCCAGCTGGCTCAGGAGGTGGAGGCGGTGAGGCGGCCACTTGGGGCCACCGCTTCTGGCGGCCGCAGGAGCGACCCACAGACAGA AATCAGGGTGAAATGGCCCACACGTGCCGTGGAACCATCAACCTGTCCACCGCGCACATTGACACGGAGGACTCTTGTGGTATCTTGCTG ACCAGTGGGGCCAGGAGCTACCACCTCAAGGCCAGCTCAGAGGTGGACCGGCAGCAGTGGATCACCGCCCTGGAGCTGGCCAAGGCCAAG GCTGTCCGCGTGATGAACACTCATTCAGGACACTGGCCTGAGACTGTCTGCAGTTGCACCGCAGATCCTCCTGCCCGGCTGGCCCGACCC AATATCAGTTCAGTCATCCGATCTTCCTTGGGGAAATACCCATTACCGTCCTGAACCCTTGTCATCCACTACTTGGCTATAAGCTCCAGA >In-frame_ENST00000407373_ENST00000342071_TCGA-EB-A42Z-01A_OSBP2_chr22_31137356_+_MRPL43_chr10_102743574_length(amino acids)=149AA_start in transcript=144_stop in transcript=593 MSSLAAKRLGMNRRPAGSGGGGGEAATWGHRFWRPQERPTDRNQGEMAHTCRGTINLSTAHIDTEDSCGILLTSGARSYHLKASSEVDRQ -------------------------------------------------------------- >In-frame_ENST00000332585_ENST00000370242_TCGA-EB-A42Z-01A_OSBP2_chr22_31137356_+_MRPL43_chr10_102743574_length(transcript)=1195nt_BP=957nt GCCCCCGCCTCGCGCCGCGCGCACGTGACTGCGCCCCCGGCCCCGCCCCCGGCCTGCCCCCCGCCCCCACTGGCCGCTCGGCCGCGCGCG GGTCGGCCGGCTCTATGGGGAAAGCGGCGGCTCCGAGCCGAGGCGGCGGCTGTGGCGGCCGCTCCCGCGGGCTCTCGTCGCTGTTCACGG TTGTCCCCTGCCTGTCGTGCCACACGGCGGCGCCGGGCATGAGCGCTTCCACGTCCGGCTCCGGGCCGGAGCCCAAGCCCCAGCCCCAGC CCGTGCCCGAACCGGAGCGGGGACCGCTGTCAGAACAGGTGTCGGAGGCAGTTTCGGAGGCAGTGCCAAGATCGGAACCTGTGTCCGAGA CGACGTCTGAGCCGGAGCCAGGGGCTGGGCAGCCATCGGAACTGCTGCAGGGGTCGCGGCCGGGGTCAGAGTCAAGCTCAGGTGTAGGGG CTGGGCCCTTCACTAAGGCCGCATCGGAGCCGCTCTCCCGGGCGGTGGGGAGCGCGACCTTTCTCAGACCCGAGTCAGGATCGCTGCCAG CGTTAAAGCCCCTGCCTCTTCTGCGACCAGGACAGGCGAAGACTCCTCTTGGGGTTCCAATGTCGGGGACTGGCACGACCTCCAGTGCCC CACTGGCCTTACTGCCTCTGGACAGCTTCGAGGGCTGGCTTCTCAAGTGGACCAACTATCTGAAGGGCTACCAGCGCCGCTGGTTCGTGC TGGGCAATGGTTTGCTCTCTTACTACAGAAATCAGGGTGAAATGGCCCACACGTGCCGTGGAACCATCAACCTGTCCACCGCGCACATTG ACACGGAGGACTCTTGTGGTATCTTGCTGACCAGTGGGGCCAGGAGCTACCACCTCAAGGCCAGCTCAGAGGTGGACCGGCAGCAGTGGA TCACCGCCCTGGAGCTGGCCAAGGCCAAGGCTGTCCGCGTGATGAACACTCATTCAGGACACTGGCCTGAGACTGTCTGCAGTTGCACCG CAGATCCTCCTGCCCGGCTGGCCCGACCCACCAGACCTCCCCACAGTGGATCCTATCTCATCCTCATTGACCTCTGCTCCAGCCCCTATG CTGTCCGCAGTTTCTTGCCTCCCGATTGTCCCTGCACTGACCACTGTGTGCTCAGCGTGAAGGCTGCATAGAAGTGTGTACGGCTTGAGG >In-frame_ENST00000332585_ENST00000370242_TCGA-EB-A42Z-01A_OSBP2_chr22_31137356_+_MRPL43_chr10_102743574_length(amino acids)=365AA_start in transcript=53_stop in transcript=1150 MPPAPTGRSAARGSAGSMGKAAAPSRGGGCGGRSRGLSSLFTVVPCLSCHTAAPGMSASTSGSGPEPKPQPQPVPEPERGPLSEQVSEAV SEAVPRSEPVSETTSEPEPGAGQPSELLQGSRPGSESSSGVGAGPFTKAASEPLSRAVGSATFLRPESGSLPALKPLPLLRPGQAKTPLG VPMSGTGTTSSAPLALLPLDSFEGWLLKWTNYLKGYQRRWFVLGNGLLSYYRNQGEMAHTCRGTINLSTAHIDTEDSCGILLTSGARSYH LKASSEVDRQQWITALELAKAKAVRVMNTHSGHWPETVCSCTADPPARLARPTRPPHSGSYLILIDLCSSPYAVRSFLPPDCPCTDHCVL -------------------------------------------------------------- >In-frame_ENST00000332585_ENST00000342071_TCGA-EB-A42Z-01A_OSBP2_chr22_31137356_+_MRPL43_chr10_102743574_length(transcript)=1187nt_BP=957nt GCCCCCGCCTCGCGCCGCGCGCACGTGACTGCGCCCCCGGCCCCGCCCCCGGCCTGCCCCCCGCCCCCACTGGCCGCTCGGCCGCGCGCG GGTCGGCCGGCTCTATGGGGAAAGCGGCGGCTCCGAGCCGAGGCGGCGGCTGTGGCGGCCGCTCCCGCGGGCTCTCGTCGCTGTTCACGG TTGTCCCCTGCCTGTCGTGCCACACGGCGGCGCCGGGCATGAGCGCTTCCACGTCCGGCTCCGGGCCGGAGCCCAAGCCCCAGCCCCAGC CCGTGCCCGAACCGGAGCGGGGACCGCTGTCAGAACAGGTGTCGGAGGCAGTTTCGGAGGCAGTGCCAAGATCGGAACCTGTGTCCGAGA CGACGTCTGAGCCGGAGCCAGGGGCTGGGCAGCCATCGGAACTGCTGCAGGGGTCGCGGCCGGGGTCAGAGTCAAGCTCAGGTGTAGGGG CTGGGCCCTTCACTAAGGCCGCATCGGAGCCGCTCTCCCGGGCGGTGGGGAGCGCGACCTTTCTCAGACCCGAGTCAGGATCGCTGCCAG CGTTAAAGCCCCTGCCTCTTCTGCGACCAGGACAGGCGAAGACTCCTCTTGGGGTTCCAATGTCGGGGACTGGCACGACCTCCAGTGCCC CACTGGCCTTACTGCCTCTGGACAGCTTCGAGGGCTGGCTTCTCAAGTGGACCAACTATCTGAAGGGCTACCAGCGCCGCTGGTTCGTGC TGGGCAATGGTTTGCTCTCTTACTACAGAAATCAGGGTGAAATGGCCCACACGTGCCGTGGAACCATCAACCTGTCCACCGCGCACATTG ACACGGAGGACTCTTGTGGTATCTTGCTGACCAGTGGGGCCAGGAGCTACCACCTCAAGGCCAGCTCAGAGGTGGACCGGCAGCAGTGGA TCACCGCCCTGGAGCTGGCCAAGGCCAAGGCTGTCCGCGTGATGAACACTCATTCAGGACACTGGCCTGAGACTGTCTGCAGTTGCACCG CAGATCCTCCTGCCCGGCTGGCCCGACCCAATATCAGTTCAGTCATCCGATCTTCCTTGGGGAAATACCCATTACCGTCCTGAACCCTTG TCATCCACTACTTGGCTATAAGCTCCAGAAGTGACAAGACACTTCACATCTTAAATATGTTTCCTAGTTTATAATTCATTTGGGCAGTAA >In-frame_ENST00000332585_ENST00000342071_TCGA-EB-A42Z-01A_OSBP2_chr22_31137356_+_MRPL43_chr10_102743574_length(amino acids)=339AA_start in transcript=53_stop in transcript=1072 MPPAPTGRSAARGSAGSMGKAAAPSRGGGCGGRSRGLSSLFTVVPCLSCHTAAPGMSASTSGSGPEPKPQPQPVPEPERGPLSEQVSEAV SEAVPRSEPVSETTSEPEPGAGQPSELLQGSRPGSESSSGVGAGPFTKAASEPLSRAVGSATFLRPESGSLPALKPLPLLRPGQAKTPLG VPMSGTGTTSSAPLALLPLDSFEGWLLKWTNYLKGYQRRWFVLGNGLLSYYRNQGEMAHTCRGTINLSTAHIDTEDSCGILLTSGARSYH -------------------------------------------------------------- >In-frame_ENST00000382310_ENST00000370242_TCGA-EB-A42Z-01A_OSBP2_chr22_31137356_+_MRPL43_chr10_102743574_length(transcript)=1127nt_BP=889nt ACTGGCCGCTCGGCCGCGCGCGGGTCGGCCGGCTCTATGGGGAAAGCGGCGGCTCCGAGCCGAGGCGGCGGCTGTGGCGGCCGCTCCCGC GGGCTCTCGTCGCTGTTCACGGTTGTCCCCTGCCTGTCGTGCCACACGGCGGCGCCGGGCATGAGCGCTTCCACGTCCGGCTCCGGGCCG GAGCCCAAGCCCCAGCCCCAGCCCGTGCCCGAACCGGAGCGGGGACCGCTGTCAGAACAGGTGTCGGAGGCAGTTTCGGAGGCAGTGCCA AGATCGGAACCTGTGTCCGAGACGACGTCTGAGCCGGAGCCAGGGGCTGGGCAGCCATCGGAACTGCTGCAGGGGTCGCGGCCGGGGTCA GAGTCAAGCTCAGGTGTAGGGGCTGGGCCCTTCACTAAGGCCGCATCGGAGCCGCTCTCCCGGGCGGTGGGGAGCGCGACCTTTCTCAGA CCCGAGTCAGGATCGCTGCCAGCGTTAAAGCCCCTGCCTCTTCTGCGACCAGGACAGGCGAAGACTCCTCTTGGGGTTCCAATGTCGGGG ACTGGCACGACCTCCAGTGCCCCACTGGCCTTACTGCCTCTGGACAGCTTCGAGGGCTGGCTTCTCAAGTGGACCAACTATCTGAAGGGC TACCAGCGCCGCTGGTTCGTGCTGGGCAATGGTTTGCTCTCTTACTACAGAAATCAGGGTGAAATGGCCCACACGTGCCGTGGAACCATC AACCTGTCCACCGCGCACATTGACACGGAGGACTCTTGTGGTATCTTGCTGACCAGTGGGGCCAGGAGCTACCACCTCAAGGCCAGCTCA GAGGTGGACCGGCAGCAGTGGATCACCGCCCTGGAGCTGGCCAAGGCCAAGGCTGTCCGCGTGATGAACACTCATTCAGGACACTGGCCT GAGACTGTCTGCAGTTGCACCGCAGATCCTCCTGCCCGGCTGGCCCGACCCACCAGACCTCCCCACAGTGGATCCTATCTCATCCTCATT GACCTCTGCTCCAGCCCCTATGCTGTCCGCAGTTTCTTGCCTCCCGATTGTCCCTGCACTGACCACTGTGTGCTCAGCGTGAAGGCTGCA >In-frame_ENST00000382310_ENST00000370242_TCGA-EB-A42Z-01A_OSBP2_chr22_31137356_+_MRPL43_chr10_102743574_length(amino acids)=348AA_start in transcript=36_stop in transcript=1082 MGKAAAPSRGGGCGGRSRGLSSLFTVVPCLSCHTAAPGMSASTSGSGPEPKPQPQPVPEPERGPLSEQVSEAVSEAVPRSEPVSETTSEP EPGAGQPSELLQGSRPGSESSSGVGAGPFTKAASEPLSRAVGSATFLRPESGSLPALKPLPLLRPGQAKTPLGVPMSGTGTTSSAPLALL PLDSFEGWLLKWTNYLKGYQRRWFVLGNGLLSYYRNQGEMAHTCRGTINLSTAHIDTEDSCGILLTSGARSYHLKASSEVDRQQWITALE -------------------------------------------------------------- >In-frame_ENST00000382310_ENST00000342071_TCGA-EB-A42Z-01A_OSBP2_chr22_31137356_+_MRPL43_chr10_102743574_length(transcript)=1119nt_BP=889nt ACTGGCCGCTCGGCCGCGCGCGGGTCGGCCGGCTCTATGGGGAAAGCGGCGGCTCCGAGCCGAGGCGGCGGCTGTGGCGGCCGCTCCCGC GGGCTCTCGTCGCTGTTCACGGTTGTCCCCTGCCTGTCGTGCCACACGGCGGCGCCGGGCATGAGCGCTTCCACGTCCGGCTCCGGGCCG GAGCCCAAGCCCCAGCCCCAGCCCGTGCCCGAACCGGAGCGGGGACCGCTGTCAGAACAGGTGTCGGAGGCAGTTTCGGAGGCAGTGCCA AGATCGGAACCTGTGTCCGAGACGACGTCTGAGCCGGAGCCAGGGGCTGGGCAGCCATCGGAACTGCTGCAGGGGTCGCGGCCGGGGTCA GAGTCAAGCTCAGGTGTAGGGGCTGGGCCCTTCACTAAGGCCGCATCGGAGCCGCTCTCCCGGGCGGTGGGGAGCGCGACCTTTCTCAGA CCCGAGTCAGGATCGCTGCCAGCGTTAAAGCCCCTGCCTCTTCTGCGACCAGGACAGGCGAAGACTCCTCTTGGGGTTCCAATGTCGGGG ACTGGCACGACCTCCAGTGCCCCACTGGCCTTACTGCCTCTGGACAGCTTCGAGGGCTGGCTTCTCAAGTGGACCAACTATCTGAAGGGC TACCAGCGCCGCTGGTTCGTGCTGGGCAATGGTTTGCTCTCTTACTACAGAAATCAGGGTGAAATGGCCCACACGTGCCGTGGAACCATC AACCTGTCCACCGCGCACATTGACACGGAGGACTCTTGTGGTATCTTGCTGACCAGTGGGGCCAGGAGCTACCACCTCAAGGCCAGCTCA GAGGTGGACCGGCAGCAGTGGATCACCGCCCTGGAGCTGGCCAAGGCCAAGGCTGTCCGCGTGATGAACACTCATTCAGGACACTGGCCT GAGACTGTCTGCAGTTGCACCGCAGATCCTCCTGCCCGGCTGGCCCGACCCAATATCAGTTCAGTCATCCGATCTTCCTTGGGGAAATAC CCATTACCGTCCTGAACCCTTGTCATCCACTACTTGGCTATAAGCTCCAGAAGTGACAAGACACTTCACATCTTAAATATGTTTCCTAGT >In-frame_ENST00000382310_ENST00000342071_TCGA-EB-A42Z-01A_OSBP2_chr22_31137356_+_MRPL43_chr10_102743574_length(amino acids)=322AA_start in transcript=36_stop in transcript=1004 MGKAAAPSRGGGCGGRSRGLSSLFTVVPCLSCHTAAPGMSASTSGSGPEPKPQPQPVPEPERGPLSEQVSEAVSEAVPRSEPVSETTSEP EPGAGQPSELLQGSRPGSESSSGVGAGPFTKAASEPLSRAVGSATFLRPESGSLPALKPLPLLRPGQAKTPLGVPMSGTGTTSSAPLALL PLDSFEGWLLKWTNYLKGYQRRWFVLGNGLLSYYRNQGEMAHTCRGTINLSTAHIDTEDSCGILLTSGARSYHLKASSEVDRQQWITALE -------------------------------------------------------------- >In-frame_ENST00000446658_ENST00000370242_TCGA-EB-A42Z-01A_OSBP2_chr22_31137356_+_MRPL43_chr10_102743574_length(transcript)=1112nt_BP=874nt GCGCGCGGGTCGGCCGGCTCTATGGGGAAAGCGGCGGCTCCGAGCCGAGGCGGCGGCTGTGGCGGCCGCTCCCGCGGGCTCTCGTCGCTG TTCACGGTTGTCCCCTGCCTGTCGTGCCACACGGCGGCGCCGGGCATGAGCGCTTCCACGTCCGGCTCCGGGCCGGAGCCCAAGCCCCAG CCCCAGCCCGTGCCCGAACCGGAGCGGGGACCGCTGTCAGAACAGGTGTCGGAGGCAGTTTCGGAGGCAGTGCCAAGATCGGAACCTGTG TCCGAGACGACGTCTGAGCCGGAGCCAGGGGCTGGGCAGCCATCGGAACTGCTGCAGGGGTCGCGGCCGGGGTCAGAGTCAAGCTCAGGT GTAGGGGCTGGGCCCTTCACTAAGGCCGCATCGGAGCCGCTCTCCCGGGCGGTGGGGAGCGCGACCTTTCTCAGACCCGAGTCAGGATCG CTGCCAGCGTTAAAGCCCCTGCCTCTTCTGCGACCAGGACAGGCGAAGACTCCTCTTGGGGTTCCAATGTCGGGGACTGGCACGACCTCC AGTGCCCCACTGGCCTTACTGCCTCTGGACAGCTTCGAGGGCTGGCTTCTCAAGTGGACCAACTATCTGAAGGGCTACCAGCGCCGCTGG TTCGTGCTGGGCAATGGTTTGCTCTCTTACTACAGAAATCAGGGTGAAATGGCCCACACGTGCCGTGGAACCATCAACCTGTCCACCGCG CACATTGACACGGAGGACTCTTGTGGTATCTTGCTGACCAGTGGGGCCAGGAGCTACCACCTCAAGGCCAGCTCAGAGGTGGACCGGCAG CAGTGGATCACCGCCCTGGAGCTGGCCAAGGCCAAGGCTGTCCGCGTGATGAACACTCATTCAGGACACTGGCCTGAGACTGTCTGCAGT TGCACCGCAGATCCTCCTGCCCGGCTGGCCCGACCCACCAGACCTCCCCACAGTGGATCCTATCTCATCCTCATTGACCTCTGCTCCAGC CCCTATGCTGTCCGCAGTTTCTTGCCTCCCGATTGTCCCTGCACTGACCACTGTGTGCTCAGCGTGAAGGCTGCATAGAAGTGTGTACGG >In-frame_ENST00000446658_ENST00000370242_TCGA-EB-A42Z-01A_OSBP2_chr22_31137356_+_MRPL43_chr10_102743574_length(amino acids)=348AA_start in transcript=21_stop in transcript=1067 MGKAAAPSRGGGCGGRSRGLSSLFTVVPCLSCHTAAPGMSASTSGSGPEPKPQPQPVPEPERGPLSEQVSEAVSEAVPRSEPVSETTSEP EPGAGQPSELLQGSRPGSESSSGVGAGPFTKAASEPLSRAVGSATFLRPESGSLPALKPLPLLRPGQAKTPLGVPMSGTGTTSSAPLALL PLDSFEGWLLKWTNYLKGYQRRWFVLGNGLLSYYRNQGEMAHTCRGTINLSTAHIDTEDSCGILLTSGARSYHLKASSEVDRQQWITALE -------------------------------------------------------------- >In-frame_ENST00000446658_ENST00000342071_TCGA-EB-A42Z-01A_OSBP2_chr22_31137356_+_MRPL43_chr10_102743574_length(transcript)=1104nt_BP=874nt GCGCGCGGGTCGGCCGGCTCTATGGGGAAAGCGGCGGCTCCGAGCCGAGGCGGCGGCTGTGGCGGCCGCTCCCGCGGGCTCTCGTCGCTG TTCACGGTTGTCCCCTGCCTGTCGTGCCACACGGCGGCGCCGGGCATGAGCGCTTCCACGTCCGGCTCCGGGCCGGAGCCCAAGCCCCAG CCCCAGCCCGTGCCCGAACCGGAGCGGGGACCGCTGTCAGAACAGGTGTCGGAGGCAGTTTCGGAGGCAGTGCCAAGATCGGAACCTGTG TCCGAGACGACGTCTGAGCCGGAGCCAGGGGCTGGGCAGCCATCGGAACTGCTGCAGGGGTCGCGGCCGGGGTCAGAGTCAAGCTCAGGT GTAGGGGCTGGGCCCTTCACTAAGGCCGCATCGGAGCCGCTCTCCCGGGCGGTGGGGAGCGCGACCTTTCTCAGACCCGAGTCAGGATCG CTGCCAGCGTTAAAGCCCCTGCCTCTTCTGCGACCAGGACAGGCGAAGACTCCTCTTGGGGTTCCAATGTCGGGGACTGGCACGACCTCC AGTGCCCCACTGGCCTTACTGCCTCTGGACAGCTTCGAGGGCTGGCTTCTCAAGTGGACCAACTATCTGAAGGGCTACCAGCGCCGCTGG TTCGTGCTGGGCAATGGTTTGCTCTCTTACTACAGAAATCAGGGTGAAATGGCCCACACGTGCCGTGGAACCATCAACCTGTCCACCGCG CACATTGACACGGAGGACTCTTGTGGTATCTTGCTGACCAGTGGGGCCAGGAGCTACCACCTCAAGGCCAGCTCAGAGGTGGACCGGCAG CAGTGGATCACCGCCCTGGAGCTGGCCAAGGCCAAGGCTGTCCGCGTGATGAACACTCATTCAGGACACTGGCCTGAGACTGTCTGCAGT TGCACCGCAGATCCTCCTGCCCGGCTGGCCCGACCCAATATCAGTTCAGTCATCCGATCTTCCTTGGGGAAATACCCATTACCGTCCTGA ACCCTTGTCATCCACTACTTGGCTATAAGCTCCAGAAGTGACAAGACACTTCACATCTTAAATATGTTTCCTAGTTTATAATTCATTTGG >In-frame_ENST00000446658_ENST00000342071_TCGA-EB-A42Z-01A_OSBP2_chr22_31137356_+_MRPL43_chr10_102743574_length(amino acids)=322AA_start in transcript=21_stop in transcript=989 MGKAAAPSRGGGCGGRSRGLSSLFTVVPCLSCHTAAPGMSASTSGSGPEPKPQPQPVPEPERGPLSEQVSEAVSEAVPRSEPVSETTSEP EPGAGQPSELLQGSRPGSESSSGVGAGPFTKAASEPLSRAVGSATFLRPESGSLPALKPLPLLRPGQAKTPLGVPMSGTGTTSSAPLALL PLDSFEGWLLKWTNYLKGYQRRWFVLGNGLLSYYRNQGEMAHTCRGTINLSTAHIDTEDSCGILLTSGARSYHLKASSEVDRQQWITALE -------------------------------------------------------------- |
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Fusion Gene PPI Analysis for OSBP2-MRPL43 |
Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in |
Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
Hgene | Hgene's interactors | Tgene | Tgene's interactors |
- Retained PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
- Lost PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
- Retained PPIs, but lost function due to frame-shift fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Related Drugs for OSBP2-MRPL43 |
Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.8 2021-05-08) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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Related Diseases for OSBP2-MRPL43 |
Diseases associated with fusion partners. (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |