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Center for Computational Systems Medicine
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Fusion Gene Summary

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Fusion Gene ORF analysis

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Fusion Genomic Features

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Fusion Protein Features

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Fusion Gene Sequence

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Fusion Gene PPI analysis

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Related Drugs

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Related Diseases

Fusion gene:PAMR1-SLC1A2 (FusionGDB2 ID:62116)

Fusion Gene Summary for PAMR1-SLC1A2

check button Fusion gene summary
Fusion gene informationFusion gene name: PAMR1-SLC1A2
Fusion gene ID: 62116
HgeneTgene
Gene symbol

PAMR1

SLC1A2

Gene ID

25891

6506

Gene namepeptidase domain containing associated with muscle regeneration 1solute carrier family 1 member 2
SynonymsDKFZP586H2123|FP938|RAMPEAAT2|EIEE41|GLT-1|HBGT
Cytomap

11p13

11p13

Type of geneprotein-codingprotein-coding
Descriptioninactive serine protease PAMR1peptidase domain-containing protein associated with muscle regeneration 1regeneration associated muscle proteaseregeneration-associated muscle protease homologexcitatory amino acid transporter 2excitotoxic amino acid transporter 2glutamate/aspartate transporter IIsodium-dependent glutamate/aspartate transporter 2solute carrier family 1 (glial high affinity glutamate transporter), member 2
Modification date2020031320200313
UniProtAcc..
Ensembl transtripts involved in fusion geneENST00000278360, ENST00000378880, 
ENST00000378878, ENST00000532848, 
ENST00000534803, 		ENST00000278379, 
ENST00000395750, ENST00000395753, 
ENST00000606205, ENST00000479543, 
Fusion gene scores* DoF score3 X 4 X 3=3610 X 10 X 6=600
# samples 413
** MAII scorelog2(4/36*10)=0.15200309344505
effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs).
DoF>8 and MAII>0		log2(13/600*10)=-2.20645087746743
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
Context

PubMed: PAMR1 [Title/Abstract] AND SLC1A2 [Title/Abstract] AND fusion [Title/Abstract]

Most frequent breakpointPAMR1(35453536)-SLC1A2(35339063), # samples:1
PAMR1(35461175)-SLC1A2(35339063), # samples:1
Anticipated loss of major functional domain due to fusion event.PAMR1-SLC1A2 seems lost the major protein functional domain in Tgene partner, which is a IUPHAR drug target due to the frame-shifted ORF.
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
TgeneSLC1A2

GO:0015813

L-glutamate transmembrane transport

26690923

TgeneSLC1A2

GO:0070207

protein homotrimerization

15265858|15483603

TgeneSLC1A2

GO:0070779

D-aspartate import across plasma membrane

7521911

TgeneSLC1A2

GO:0098712

L-glutamate import across plasma membrane

7521911|15265858|26690923


check buttonFusion gene breakpoints across PAMR1 (5'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.

check buttonFusion gene breakpoints across SLC1A2 (3'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.

check button Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0)
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
SourceDiseaseSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
ChimerDB4LGGTCGA-FG-8189-01BPAMR1chr11

35453536

-SLC1A2chr11

35339063

-
ChimerDB4LGGTCGA-HT-7854-01APAMR1chr11

35461175

-SLC1A2chr11

35339063

-


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Fusion Gene ORF analysis for PAMR1-SLC1A2

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
intron-3CDSENST00000278360ENST00000278379PAMR1chr11

35453536

-SLC1A2chr11

35339063

-
intron-5UTRENST00000278360ENST00000395750PAMR1chr11

35453536

-SLC1A2chr11

35339063

-
intron-5UTRENST00000278360ENST00000395753PAMR1chr11

35453536

-SLC1A2chr11

35339063

-
intron-5UTRENST00000278360ENST00000606205PAMR1chr11

35453536

-SLC1A2chr11

35339063

-
intron-intronENST00000278360ENST00000479543PAMR1chr11

35453536

-SLC1A2chr11

35339063

-
intron-3CDSENST00000378880ENST00000278379PAMR1chr11

35453536

-SLC1A2chr11

35339063

-
intron-5UTRENST00000378880ENST00000395750PAMR1chr11

35453536

-SLC1A2chr11

35339063

-
intron-5UTRENST00000378880ENST00000395753PAMR1chr11

35453536

-SLC1A2chr11

35339063

-
intron-5UTRENST00000378880ENST00000606205PAMR1chr11

35453536

-SLC1A2chr11

35339063

-
intron-intronENST00000378880ENST00000479543PAMR1chr11

35453536

-SLC1A2chr11

35339063

-
intron-3CDSENST00000378878ENST00000278379PAMR1chr11

35453536

-SLC1A2chr11

35339063

-
intron-5UTRENST00000378878ENST00000395750PAMR1chr11

35453536

-SLC1A2chr11

35339063

-
intron-5UTRENST00000378878ENST00000395753PAMR1chr11

35453536

-SLC1A2chr11

35339063

-
intron-5UTRENST00000378878ENST00000606205PAMR1chr11

35453536

-SLC1A2chr11

35339063

-
intron-intronENST00000378878ENST00000479543PAMR1chr11

35453536

-SLC1A2chr11

35339063

-
intron-3CDSENST00000532848ENST00000278379PAMR1chr11

35453536

-SLC1A2chr11

35339063

-
intron-5UTRENST00000532848ENST00000395750PAMR1chr11

35453536

-SLC1A2chr11

35339063

-
intron-5UTRENST00000532848ENST00000395753PAMR1chr11

35453536

-SLC1A2chr11

35339063

-
intron-5UTRENST00000532848ENST00000606205PAMR1chr11

35453536

-SLC1A2chr11

35339063

-
intron-intronENST00000532848ENST00000479543PAMR1chr11

35453536

-SLC1A2chr11

35339063

-
intron-3CDSENST00000534803ENST00000278379PAMR1chr11

35453536

-SLC1A2chr11

35339063

-
intron-5UTRENST00000534803ENST00000395750PAMR1chr11

35453536

-SLC1A2chr11

35339063

-
intron-5UTRENST00000534803ENST00000395753PAMR1chr11

35453536

-SLC1A2chr11

35339063

-
intron-5UTRENST00000534803ENST00000606205PAMR1chr11

35453536

-SLC1A2chr11

35339063

-
intron-intronENST00000534803ENST00000479543PAMR1chr11

35453536

-SLC1A2chr11

35339063

-
In-frameENST00000278360ENST00000278379PAMR1chr11

35461175

-SLC1A2chr11

35339063

-
5CDS-5UTRENST00000278360ENST00000395750PAMR1chr11

35461175

-SLC1A2chr11

35339063

-
5CDS-5UTRENST00000278360ENST00000395753PAMR1chr11

35461175

-SLC1A2chr11

35339063

-
5CDS-5UTRENST00000278360ENST00000606205PAMR1chr11

35461175

-SLC1A2chr11

35339063

-
5CDS-intronENST00000278360ENST00000479543PAMR1chr11

35461175

-SLC1A2chr11

35339063

-
In-frameENST00000378880ENST00000278379PAMR1chr11

35461175

-SLC1A2chr11

35339063

-
5CDS-5UTRENST00000378880ENST00000395750PAMR1chr11

35461175

-SLC1A2chr11

35339063

-
5CDS-5UTRENST00000378880ENST00000395753PAMR1chr11

35461175

-SLC1A2chr11

35339063

-
5CDS-5UTRENST00000378880ENST00000606205PAMR1chr11

35461175

-SLC1A2chr11

35339063

-
5CDS-intronENST00000378880ENST00000479543PAMR1chr11

35461175

-SLC1A2chr11

35339063

-
In-frameENST00000378878ENST00000278379PAMR1chr11

35461175

-SLC1A2chr11

35339063

-
5CDS-5UTRENST00000378878ENST00000395750PAMR1chr11

35461175

-SLC1A2chr11

35339063

-
5CDS-5UTRENST00000378878ENST00000395753PAMR1chr11

35461175

-SLC1A2chr11

35339063

-
5CDS-5UTRENST00000378878ENST00000606205PAMR1chr11

35461175

-SLC1A2chr11

35339063

-
5CDS-intronENST00000378878ENST00000479543PAMR1chr11

35461175

-SLC1A2chr11

35339063

-
Frame-shiftENST00000532848ENST00000278379PAMR1chr11

35461175

-SLC1A2chr11

35339063

-
5CDS-5UTRENST00000532848ENST00000395750PAMR1chr11

35461175

-SLC1A2chr11

35339063

-
5CDS-5UTRENST00000532848ENST00000395753PAMR1chr11

35461175

-SLC1A2chr11

35339063

-
5CDS-5UTRENST00000532848ENST00000606205PAMR1chr11

35461175

-SLC1A2chr11

35339063

-
5CDS-intronENST00000532848ENST00000479543PAMR1chr11

35461175

-SLC1A2chr11

35339063

-
intron-3CDSENST00000534803ENST00000278379PAMR1chr11

35461175

-SLC1A2chr11

35339063

-
intron-5UTRENST00000534803ENST00000395750PAMR1chr11

35461175

-SLC1A2chr11

35339063

-
intron-5UTRENST00000534803ENST00000395753PAMR1chr11

35461175

-SLC1A2chr11

35339063

-
intron-5UTRENST00000534803ENST00000606205PAMR1chr11

35461175

-SLC1A2chr11

35339063

-
intron-intronENST00000534803ENST00000479543PAMR1chr11

35461175

-SLC1A2chr11

35339063

-

check buttonORFfinder result based on the fusion transcript sequence of in-frame fusion genes.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandSeq length
(transcript)		BP loci
(transcript)		Predicted start
(transcript)		Predicted stop
(transcript)		Seq length
(amino acids)
ENST00000278360PAMR1chr1135461175-ENST00000278379SLC1A2chr1135339063-125851189382896952
ENST00000378880PAMR1chr1135461175-ENST00000278379SLC1A2chr1135339063-1294215463773253958
ENST00000378878PAMR1chr1135461175-ENST00000278379SLC1A2chr1135339063-12181785182492824

check buttonDeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandNo-coding scoreCoding score
ENST00000278360ENST00000278379PAMR1chr1135461175-SLC1A2chr1135339063-0.0001471210.9998529
ENST00000378880ENST00000278379PAMR1chr1135461175-SLC1A2chr1135339063-0.0002246970.99977535
ENST00000378878ENST00000278379PAMR1chr1135461175-SLC1A2chr1135339063-0.0002086990.9997913

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Fusion Genomic Features for PAMR1-SLC1A2


check buttonFusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints.
HgeneHchrHbpHstrandTgeneTchrTbpTstrand1-pp (fusion gene breakpoint)

check buttonDistribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page.

check buttonDistribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page.

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Fusion Protein Features for PAMR1-SLC1A2


check button Go to

FGviewer for the breakpoints of chr11:35461175-chr11:35339063

.
- FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels.
FGviewer

check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
..
FUNCTION: Might normally function as a transcriptional repressor. EWS-fusion-proteins (EFPS) may play a role in the tumorigenic process. They may disturb gene expression by mimicking, or interfering with the normal function of CTD-POLII within the transcription initiation complex. They may also contribute to an aberrant activation of the fusion protein target genes.FUNCTION: Might normally function as a transcriptional repressor. EWS-fusion-proteins (EFPS) may play a role in the tumorigenic process. They may disturb gene expression by mimicking, or interfering with the normal function of CTD-POLII within the transcription initiation complex. They may also contribute to an aberrant activation of the fusion protein target genes.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page


* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
HgenePAMR1chr11:35461175chr11:35339063ENST00000278360-91242_94383.6666666666667738.0Compositional biasNote=Cys-rich
HgenePAMR1chr11:35461175chr11:35339063ENST00000378880-81142_94366.6666666666667721.0Compositional biasNote=Cys-rich
HgenePAMR1chr11:35461175chr11:35339063ENST00000278360-912128_236383.6666666666667738.0DomainCUB
HgenePAMR1chr11:35461175chr11:35339063ENST00000278360-912235_272383.6666666666667738.0DomainEGF-like
HgenePAMR1chr11:35461175chr11:35339063ENST00000278360-912278_344383.6666666666667738.0DomainSushi 1
HgenePAMR1chr11:35461175chr11:35339063ENST00000378880-811128_236366.6666666666667721.0DomainCUB
HgenePAMR1chr11:35461175chr11:35339063ENST00000378880-811235_272366.6666666666667721.0DomainEGF-like
HgenePAMR1chr11:35461175chr11:35339063ENST00000378880-811278_344366.6666666666667721.0DomainSushi 1
TgeneSLC1A2chr11:35461175chr11:35339063ENST00000278379011345_3755.666666666666667575.0IntramembraneDiscontinuously helical
TgeneSLC1A2chr11:35461175chr11:35339063ENST00000278379011425_4585.666666666666667575.0IntramembraneDiscontinuously helical
TgeneSLC1A2chr11:35461175chr11:35339063ENST00000395750112345_3750566.0IntramembraneDiscontinuously helical
TgeneSLC1A2chr11:35461175chr11:35339063ENST00000395750112425_4580566.0IntramembraneDiscontinuously helical
TgeneSLC1A2chr11:35461175chr11:35339063ENST00000395753112345_3750566.0IntramembraneDiscontinuously helical
TgeneSLC1A2chr11:35461175chr11:35339063ENST00000395753112425_4580566.0IntramembraneDiscontinuously helical
TgeneSLC1A2chr11:35461175chr11:35339063ENST00000278379011362_3645.666666666666667575.0RegionAspartate binding
TgeneSLC1A2chr11:35461175chr11:35339063ENST00000278379011442_4465.666666666666667575.0RegionAspartate binding
TgeneSLC1A2chr11:35461175chr11:35339063ENST00000395750112362_3640566.0RegionAspartate binding
TgeneSLC1A2chr11:35461175chr11:35339063ENST00000395750112442_4460566.0RegionAspartate binding
TgeneSLC1A2chr11:35461175chr11:35339063ENST00000395753112362_3640566.0RegionAspartate binding
TgeneSLC1A2chr11:35461175chr11:35339063ENST00000395753112442_4460566.0RegionAspartate binding
TgeneSLC1A2chr11:35461175chr11:35339063ENST00000278379011109_1205.666666666666667575.0Topological domainCytoplasmic
TgeneSLC1A2chr11:35461175chr11:35339063ENST00000278379011143_2355.666666666666667575.0Topological domainExtracellular
TgeneSLC1A2chr11:35461175chr11:35339063ENST00000278379011260_2685.666666666666667575.0Topological domainCytoplasmic
TgeneSLC1A2chr11:35461175chr11:35339063ENST00000278379011297_3175.666666666666667575.0Topological domainExtracellular
TgeneSLC1A2chr11:35461175chr11:35339063ENST00000278379011340_3445.666666666666667575.0Topological domainCytoplasmic
TgeneSLC1A2chr11:35461175chr11:35339063ENST00000278379011376_3845.666666666666667575.0Topological domainCytoplasmic
TgeneSLC1A2chr11:35461175chr11:35339063ENST00000278379011412_4245.666666666666667575.0Topological domainExtracellular
TgeneSLC1A2chr11:35461175chr11:35339063ENST00000278379011459_4715.666666666666667575.0Topological domainExtracellular
TgeneSLC1A2chr11:35461175chr11:35339063ENST00000278379011494_5745.666666666666667575.0Topological domainCytoplasmic
TgeneSLC1A2chr11:35461175chr11:35339063ENST0000027837901165_875.666666666666667575.0Topological domainExtracellular
TgeneSLC1A2chr11:35461175chr11:35339063ENST00000395750112109_1200566.0Topological domainCytoplasmic
TgeneSLC1A2chr11:35461175chr11:35339063ENST00000395750112143_2350566.0Topological domainExtracellular
TgeneSLC1A2chr11:35461175chr11:35339063ENST000003957501121_440566.0Topological domainCytoplasmic
TgeneSLC1A2chr11:35461175chr11:35339063ENST00000395750112260_2680566.0Topological domainCytoplasmic
TgeneSLC1A2chr11:35461175chr11:35339063ENST00000395750112297_3170566.0Topological domainExtracellular
TgeneSLC1A2chr11:35461175chr11:35339063ENST00000395750112340_3440566.0Topological domainCytoplasmic
TgeneSLC1A2chr11:35461175chr11:35339063ENST00000395750112376_3840566.0Topological domainCytoplasmic
TgeneSLC1A2chr11:35461175chr11:35339063ENST00000395750112412_4240566.0Topological domainExtracellular
TgeneSLC1A2chr11:35461175chr11:35339063ENST00000395750112459_4710566.0Topological domainExtracellular
TgeneSLC1A2chr11:35461175chr11:35339063ENST00000395750112494_5740566.0Topological domainCytoplasmic
TgeneSLC1A2chr11:35461175chr11:35339063ENST0000039575011265_870566.0Topological domainExtracellular
TgeneSLC1A2chr11:35461175chr11:35339063ENST00000395753112109_1200566.0Topological domainCytoplasmic
TgeneSLC1A2chr11:35461175chr11:35339063ENST00000395753112143_2350566.0Topological domainExtracellular
TgeneSLC1A2chr11:35461175chr11:35339063ENST000003957531121_440566.0Topological domainCytoplasmic
TgeneSLC1A2chr11:35461175chr11:35339063ENST00000395753112260_2680566.0Topological domainCytoplasmic
TgeneSLC1A2chr11:35461175chr11:35339063ENST00000395753112297_3170566.0Topological domainExtracellular
TgeneSLC1A2chr11:35461175chr11:35339063ENST00000395753112340_3440566.0Topological domainCytoplasmic
TgeneSLC1A2chr11:35461175chr11:35339063ENST00000395753112376_3840566.0Topological domainCytoplasmic
TgeneSLC1A2chr11:35461175chr11:35339063ENST00000395753112412_4240566.0Topological domainExtracellular
TgeneSLC1A2chr11:35461175chr11:35339063ENST00000395753112459_4710566.0Topological domainExtracellular
TgeneSLC1A2chr11:35461175chr11:35339063ENST00000395753112494_5740566.0Topological domainCytoplasmic
TgeneSLC1A2chr11:35461175chr11:35339063ENST0000039575311265_870566.0Topological domainExtracellular
TgeneSLC1A2chr11:35461175chr11:35339063ENST00000278379011121_1425.666666666666667575.0TransmembraneHelical
TgeneSLC1A2chr11:35461175chr11:35339063ENST00000278379011236_2595.666666666666667575.0TransmembraneHelical%3B Name%3D4
TgeneSLC1A2chr11:35461175chr11:35339063ENST00000278379011269_2965.666666666666667575.0TransmembraneHelical%3B Name%3D5
TgeneSLC1A2chr11:35461175chr11:35339063ENST00000278379011318_3395.666666666666667575.0TransmembraneHelical%3B Name%3D6
TgeneSLC1A2chr11:35461175chr11:35339063ENST00000278379011385_4115.666666666666667575.0TransmembraneHelical%3B Name%3D7
TgeneSLC1A2chr11:35461175chr11:35339063ENST0000027837901145_645.666666666666667575.0TransmembraneHelical
TgeneSLC1A2chr11:35461175chr11:35339063ENST00000278379011472_4935.666666666666667575.0TransmembraneHelical%3B Name%3D8
TgeneSLC1A2chr11:35461175chr11:35339063ENST0000027837901188_1085.666666666666667575.0TransmembraneHelical
TgeneSLC1A2chr11:35461175chr11:35339063ENST00000395750112121_1420566.0TransmembraneHelical
TgeneSLC1A2chr11:35461175chr11:35339063ENST00000395750112236_2590566.0TransmembraneHelical%3B Name%3D4
TgeneSLC1A2chr11:35461175chr11:35339063ENST00000395750112269_2960566.0TransmembraneHelical%3B Name%3D5
TgeneSLC1A2chr11:35461175chr11:35339063ENST00000395750112318_3390566.0TransmembraneHelical%3B Name%3D6
TgeneSLC1A2chr11:35461175chr11:35339063ENST00000395750112385_4110566.0TransmembraneHelical%3B Name%3D7
TgeneSLC1A2chr11:35461175chr11:35339063ENST0000039575011245_640566.0TransmembraneHelical
TgeneSLC1A2chr11:35461175chr11:35339063ENST00000395750112472_4930566.0TransmembraneHelical%3B Name%3D8
TgeneSLC1A2chr11:35461175chr11:35339063ENST0000039575011288_1080566.0TransmembraneHelical
TgeneSLC1A2chr11:35461175chr11:35339063ENST00000395753112121_1420566.0TransmembraneHelical
TgeneSLC1A2chr11:35461175chr11:35339063ENST00000395753112236_2590566.0TransmembraneHelical%3B Name%3D4
TgeneSLC1A2chr11:35461175chr11:35339063ENST00000395753112269_2960566.0TransmembraneHelical%3B Name%3D5
TgeneSLC1A2chr11:35461175chr11:35339063ENST00000395753112318_3390566.0TransmembraneHelical%3B Name%3D6
TgeneSLC1A2chr11:35461175chr11:35339063ENST00000395753112385_4110566.0TransmembraneHelical%3B Name%3D7
TgeneSLC1A2chr11:35461175chr11:35339063ENST0000039575311245_640566.0TransmembraneHelical
TgeneSLC1A2chr11:35461175chr11:35339063ENST00000395753112472_4930566.0TransmembraneHelical%3B Name%3D8
TgeneSLC1A2chr11:35461175chr11:35339063ENST0000039575311288_1080566.0TransmembraneHelical

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
HgenePAMR1chr11:35461175chr11:35339063ENST00000278360-912387_444383.6666666666667738.0DomainSushi 2
HgenePAMR1chr11:35461175chr11:35339063ENST00000278360-912445_720383.6666666666667738.0DomainPeptidase S1
HgenePAMR1chr11:35461175chr11:35339063ENST00000378880-811387_444366.6666666666667721.0DomainSushi 2
HgenePAMR1chr11:35461175chr11:35339063ENST00000378880-811445_720366.6666666666667721.0DomainPeptidase S1
TgeneSLC1A2chr11:35461175chr11:35339063ENST000002783790111_445.666666666666667575.0Topological domainCytoplasmic


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Fusion Gene Sequence for PAMR1-SLC1A2


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones.
>In-frame_ENST00000278360_ENST00000278379_TCGA-HT-7854-01A_PAMR1_chr11_35461175_-_SLC1A2_chr11_35339063_length(transcript)=12585nt_BP=1189nt
CCTCCCCAGTAGACGCTCGGGCACCAGCCGCGGCAAGGATGGAGCTGGGTTGCTGGACGCAGTTGGGGCTCACTTTTCTTCAGCTCCTTC
TCATCTCGTCCTTGCCAAGAGAGTACACAGTCATTAATGAAGCCTGCCCTGGAGCAGAGTGGAATATCATGTGTCGGGAGTGCTGTGAAT
ATGATCAGATTGAGTGCGTCTGCCCCGGAAAGAGGGAAGTCGTGGGTTATACCATCCCTTGCTGCAGGAATGAGGAGAATGAGTGTGACT
CCTGCCTGATCCACCCAGGTTGTACCATCTTTGAAAACTGCAAGAGCTGCCGAAATGGCTCATGGGGGGGTACCTTGGATGACTTCTATG
TGAAGGGGTTCTACTGTGCAGAGTGCCGAGCAGGCTGGTACGGAGGAGACTGCATGCGATGTGGCCAGGTTCTGCGAGCCCCAAAGGGTC
AGATTTTGTTGGAAAGCTATCCCCTAAATGCTCACTGTGAATGGACCATTCATGCTAAACCTGGGTTTGTCATCCAACTAAGATTTGTCA
TGTTGAGCCTGGAGTTTGACTACATGTGCCAGTATGACTATGTTGAGGTTCGTGATGGAGACAACCGCGATGGCCAGATCATCAAGCGTG
TCTGTGGCAACGAGCGGCCAGCTCCTATCCAGAGCATAGGATCCTCACTCCACGTCCTCTTCCACTCCGATGGCTCCAAGAATTTTGACG
GTTTCCATGCCATTTATGAGGAGATCACAGCATGCTCCTCATCCCCTTGTTTCCATGACGGCACGTGCGTCCTTGACAAGGCTGGATCTT
ACAAGTGTGCCTGCTTGGCAGGCTATACTGGGCAGCGCTGTGAAAATCTTCTGGAGGCTGGGAAGTCCAAGATCAAGGCGTCAGAAGATT
CATTGTCTGTCCTTGAAGAAAGAAACTGCTCAGACCCTGGGGGCCCAGTCAATGGGTACCAGAAAATAACAGGGGGCCCTGGGCTTATCA
ACGGACGCCATGCTAAAATTGGCACCGTGGTGTCTTTCTTTTGTAACAACTCCTATGTTCTTAGTGGCAATGAGAAAAGAACTTGCCAGC
AGAATGGAGAGTGGTCAGGGAAACAGCCCATCTGCATAAAAGCCTGCCGAGAACCAAAGATTTCAGACCTGGTGAGAAGGAGAGTTCTTC
CGATGCAGGTTCAGTCAAGTGCCAACAATATGCCCAAGCAGGTGGAAGTGCGAATGCACGACAGTCATCTTGGCTCAGAGGAACCCAAGC
ACCGGCACCTGGGCCTGCGCCTGTGTGACAAGCTGGGGAAGAATCTGCTGCTCACCCTGACGGTGTTTGGTGTCATCCTGGGAGCAGTGT
GTGGAGGGCTTCTTCGCTTGGCATCTCCCATCCACCCTGATGTGGTTATGTTAATAGCCTTCCCAGGGGATATACTCATGAGGATGCTAA
AAATGCTCATTCTCCCTCTAATCATCTCCAGCTTAATCACAGGGTTGTCAGGCCTGGATGCTAAGGCTAGTGGCCGCTTGGGCACGAGAG
CCATGGTGTATTACATGTCCACGACCATCATTGCTGCAGTACTGGGGGTCATTCTGGTCTTGGCTATCCATCCAGGCAATCCCAAGCTCA
AGAAGCAGCTGGGGCCTGGGAAGAAGAATGATGAAGTGTCCAGCCTGGATGCCTTCCTGGACCTTATTCGAAATCTCTTCCCTGAAAACC
TTGTCCAAGCCTGCTTTCAACAGATTCAAACAGTGACGAAGAAAGTCCTGGTTGCACCACCGCCGGACGAGGAGGCCAACGCAACCAGCG
CTGTTGTCTCTCTGTTGAACGAGACTGTGACTGAGGTGCCGGAGGAGACTAAGATGGTTATCAAGAAGGGCCTGGAGTTCAAGGATGGGA
TGAACGTCTTAGGTCTGATAGGGTTTTTCATTGCTTTTGGCATCGCTATGGGGAAGATGGGAGATCAGGCCAAGCTGATGGTGGATTTCT
TCAACATTTTGAATGAGATTGTAATGAAGTTAGTGATCATGATCATGTGGTACTCTCCCCTGGGTATCGCCTGCCTGATCTGTGGAAAGA
TCATTGCAATCAAGGACTTAGAAGTGGTTGCTAGGCAACTGGGGATGTACATGGTAACAGTGATCATAGGCCTCATCATCCACGGGGGCA
TCTTTCTCCCCTTGATTTACTTTGTAGTGACCAGGAAAAACCCCTTCTCCTTTTTTGCTGGCATTTTCCAAGCTTGGATCACTGCCCTGG
GCACCGCTTCCAGTGCTGGAACTTTGCCTGTCACCTTTCGTTGCCTGGAAGAAAATCTGGGGATTGATAAGCGTGTGACTAGATTCGTCC
TTCCTGTTGGAGCAACCATTAACATGGATGGTACAGCCCTTTATGAAGCGGTAGCCGCCATCTTTATAGCCCAAATGAATGGTGTTGTCC
TGGATGGAGGACAGATTGTGACTGTAAGCCTCACAGCCACCCTGGCAAGCGTCGGCGCGGCCAGTATCCCCAGTGCCGGGCTGGTCACCA
TGCTCCTCATTCTGACAGCCGTGGGCCTGCCAACAGAGGACATCAGCCTGCTGGTGGCTGTGGACTGGCTGCTGGACAGGATGAGAACTT
CAGTCAATGTTGTGGGTGACTCTTTTGGGGCTGGGATAGTCTATCACCTCTCCAAGTCTGAGCTGGATACCATTGACTCCCAGCATCGAG
TGCATGAAGATATTGAAATGACCAAGACTCAATCCATTTATGATGACATGAAGAACCACAGGGAAAGCAACTCTAATCAATGTGTCTATG
CTGCACACAACTCTGTCATAGTAGATGAATGCAAGGTAACTCTGGCAGCCAATGGAAAGTCAGCCGACTGCAGTGTTGAGGAAGAACCTT
GGAAACGTGAGAAATAAGGATATGAGTCTCAGCAAATTCTTGAATAAACTCCCCAGCGTATCCTATGGTAACTGATGATATAAACAAGCT
TTCTTTAAAAAGGAAAAAAATGCGTATATTTCTATGTTTACTTAATCTGTTAGCCGAGGCTTAGAGGAGCTCTTGTGAGTCAGTGATGAC
AGGCACGGTGCTGTGTCTTTGCCAAATAATGCTTTATAACCGTCTAATTTTCTCACTTGTATTATTATTTGAATGGATGCTGCTGGAGGA
ATCAGTTGGAATTGAAGACACGTTCTTGCCAGCTTCCCTTTTCTCCCAAGATGCAGAAATGTGGATGCTCTTTTCCCAGGGGACATGAGT
AAAGCAGTGTGGTACACTCCAGGGACTTGGGAAAATGAGCAAACACACAGCGTGTTATTCCTTAAAGTGTTCTCCATGTCTCGCCTTGTT
ATGCACAAGAGATTCTATTAAAAGCCTCTAGAAGTAACTCCCCTTAAAATGTCTAGTAAAGCTTGCACATGGATTGATTAAAAGCAAATA
CCTGTCTTAGGGAATTCTGACAATTTATCTTCCATATGCTCTTTAAGTAAAATGTTTCAAAGACAGTTTTAAAGGGAGCCATGCTCTTAA
AGGCAGTTGATTAAAGAACCTGTTACATCTCTGCCTTACCCTGTGTAATCTGTGAGAACAATGGTTGAAATTTCAAAGTATGTTTCATTA
TTCTTTCTAAATTTGATAATTGATTAGGAAGTATTTTATATATAACCACTGTAGATATTGACAAAAGTAAGAGAGCACAGTCAACATAAA
GTTTAACCAGAGTTAAATATTCAAATTTATTTATGTTCGGTTTGCCTTCACCTGGTGTAGTAAAATCAAATGAGATTATTTGGTATGTGT
TTTGCTTTGTTTAACCCAAAAGATTATTTTTTGGTTCCTAAAGAAAAAGATATTTTTAATCTGTCAATTATTTCAGTCATCATCTCATCG
TCCTAGAAAGCCTGGTCATTTTACTGTCCTCACACATGGAAGACACTTGTGTTGGCTGTGCCTCTTTTAATGTCATCTCTTGATGAAACA
AAAATACTGGTATTTATCCAATATGTTGAAAGCGTTTTGTTATCTTCTATCAAAGCACATAAAACCAGTTATAGGACACAGTTGGAAGCA
GAGCCAGTCTTCCTCCTCAGTCTTCTCAGTAGAAAGGAACAGAAAACAAACATCTGTGCAAAACCCTATAAAAGTGATATTCCTATGGCA
GAGTCCAGGCAGCCTTGAACAATGACATGGCAACAAAGGATGGCTCTGTACAACTTCACAGATGGAATCTTGTTTAAGGCTGTGAAGTTT
TAAGGAATAAATAATATAATTGGTGTAGCACAGTGCCTTGCATGCAGTAGGCAGCCAACAAATCCTTAATGATTGGTAATGCAAGCTAAA
ATTTTTAATGTCTCTACTATCCTTTTTTATTGAATAACGCACAGTATTTTCCTAAGGTTGCTGGGTTTGGGAGTAAGCTTGGGACTTGAA
TCATTGAGAAATAAAGCACATTTGACTCTAAGAAGTATGTAGAACCTTGTTTATAGGTGAGAATAGGCTGTATTATATGAAACCAGCGGA
GGGATGCTGAGACAGTCATGGTTTATAGAATCCAAATTCTCTGAGATGAGGGTGCTTATGGACCTCAAATAGCCTTTCTTATCTGCTCCT
TGTGACTTCTCTCTTTTAAATCAGATACCTTTGAAACATACAAGAGACATGAGATTCCAGTTGTTTTTGTCTCCTAAACCCTAGTGATTT
TTGGATAAGGATCACTACTGAACAGTATTAGGCAACTTTTCATTTTTGCTTTTCAAATGACATTGGTCTTTATTTCCAGTAGATGGGCAG
TAAACAGGGTCAGGGTGGTCAAGGGATATGATTAAGTGTAGTAGTAGAAAATGCATTCTTTTTTTTTTTTTTTTTTTAGACAGAGTCTTG
CTCTGTTGCTCAGGCTGGAGTACAGTGGCACGATCTCAGCTCACTGCACTGCAATGTCCACCTCTCTAGTTCAAGCGATTCTCCTGTCTC
AGCCTCCCGAGTAGCTGGGACTACAGGCACATGCCACCATGCCTGGCTAATTTTTTGTATTTTTAGTACAGATGGGTTTCATTATGTTAG
CCAGGATGGTCTCGATCTCCTGACCTCATGATCCACCCGCCATGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGTGCCCGGC
CAGAAAATACATTCTTTACAGCAAATGTTATAGGTTAAGGAGACAGTTCCTGGGTTTAGCTGTGAAACTGTTTAGGATTTTCTTTAAGTG
GTGTTCCCAAGAGCTTTTTTCTGGTAAGTTGGAGGCTATAGGCAAAGCGTCTAGGAGCTTGTTGTTTTTTGCTATGGAAGGCCAGCTTTG
GGATCTATATACATGGGCATGTTTCTCAATGGAGTGGTCACAGGATTCTCTTCTCAGAACTCTGCCTGAAACCTTTCCGGTGTGTTTTGT
CTTCAACTTTTTCCTAGCTATCCTATTAGCCTGTAAATATGTCAGCAGACAATGTGTTTGGAAGAAACAAGGTGTACAACTTCACAAAGC
AAGTTTTTTCTGGTCTGAGACTTACTGTGTGCAGGAAGTCTCGTGAGAATATACTTAGAAAATCACACTTATCTGGAAATTCAATAAGTC
ATATTAAAAATATACAATTTCTTGAACTCAGGACTAGCCTGAAAATCCAAAATGCATGTAGAGTTGACATGTTGACATATGTCTATGTCC
TCTGTTTTTATTTAAGCCTCATTTATTTCTCCCTTGCCATGCCCATTTGGGATTTTCTTTGCCCAGCATATGTGCCATAAACAGAACAAA
TGGATCCAGGGTATACCTCTAATAACCTTTATCTAAATAGAATACATTTAACCTGTCAATTATATGTATAGATTTATCCTAATTGGTTCA
ACATATATATGAATGCTTGTAATAGTCTGTTACTATTTGATAATGCATAAATGTTATATTTATATACAGTTACAGCAGGCCAGAAACATA
CATACACTGCATCCTGTAAGGTCTGTAAATCAGGGCTTCGGCAATGCCATTTTGCTATAGACTCATTCATGTTTTTTAGGAATCAGAATC
ATTTCAGGAGAAAACCAACTAAGTAGACTTTAATTCTTCTCTTTCTCATTCTTGCCCTTTGAGAAACCCAAGTGGAATCATCACTTAATT
ACTTACTCAAATTCAATGAATCAAATCCAATCCAATCAGTGAGAAGAATAGCTTATCTTTCAAGGTAATACTTTACCTTAGATCTTTGAG
GGCATGCTTCCCATACAAAGAGCATCAGAAAATCAGGGCAATCATCTAGATCTCACAGATCTTCAACATAGGACTCTAGGTTATGAGAGC
TGAACCACATAGCTATCAGTTTCAGTTTTTACTTCCTATTGAGTGTGTAGAAACACAGCCTATGGTTTTGCTGTCTGCGGAAGTTACCAT
ACCCTGTAAAAGACAAATATTTCTTTCTCCTCTCGAACCACTAGTCAGCCTGGATATTCATGAAAGCTGAAAGAAGGGGTGCCAAAATGC
CTAGCTCCTGGATTTAGACTCATGGAATATGAGAAAGGCTTAGGGAAAATTCAAGTCATGGGGAGATTCCTGCTAGGTGATGCCAGGAAT
CTCAATGACCTGTTGATTAGAGGGTCTCTGGTCATTTCCACTTGTGTGTGGAGAAATACATCATTTGCATATGTATCTAGTCAAGAAGCC
CTTTTGGAGCAAAGTGGTTGGGAAACTCATTTACTGGGTCCACCAAAGGAAACCCAATTCTGCCATGTTTTTGCAAATACTACACGTCCC
TTTGCTCTCAATAGCAAAAGTGATGTTATAGTTTTTTTTACTTTTGTCAGAATCAAGGCTTCGGCCACCTGTGCAATATTTTCCCATGGA
ATGCAGCAGTAAATCCAAGTAGGTATATCCGTGCTCAGAGAGAATTCTCCATAGTTCTGACTCCTGAAAAACAAGTCTCATTAGCTCTCA
TCTAGTTTGATGACTAAAAGTGCACAGCAGTTATACCCCAGTGGAAGTGATTTTTCTCACCTAGCTGCTCTCTAACTCTTACGGCTATCT
AGTTGTCTGAGCTGCTGGTTTGTTTTACTTATTCTCCAACTGAACTCATTCCAAACCAAGAAAAAGGACCAAATGAAATTTTCAGTTATT
ATCATACTTGCTCCTTGAATAAGAATGCTAGAGTCTGGAGGCAGAAGAAGACTAAGTTAAAAAAAAAACAGCCTGAAGGAATTCTGGAGT
GAGTTTTGTAAGTCTAATTGTCAAAGAAGATAAATGGTCTCAGTATCTGTAGTAATTTCTGGTTAAGCCTAGAGGGATCACTGAGTGCCA
ATCCAAGCAGGTGGCACTAGAGGCAGATTGTTCTCCTAGCATAGAGTGAGTTTCCAGCTGCTCATGACACATTTTCTTATGATTTTCCCT
AAAAGAAAACCAAATTTTCTACTCCACCTCTTCCTTTCCTATCATTCCACTTATTGTTGCTGCTTTGCTAACAGCCAGCTTAGTAAGCCA
TCACACAAGTTAGTGTGAGGCTTGGTTTTAAAATAGATAACAGAGAATCTTGATTAAATAGTATCCAACTTTGTAGCATAACACAGCTAA
TTCAGGCAATGACATAGAGATGATAAGAAACAACATGGTTTGGTAGAGGGAACATTTGATTTAGACTCTGCCCATTTTTAGCTGTATGAC
TTACATAAGTCATTTTGTGTCCAAGCCTCATTTTCTCCCATATGAAAAGTGAAGGGGTTGGATTAAATGACTAAAATCCCCTTCCAGCCC
TATGAGCCCAATGTATTATGATCTCTGCTTTGTTTCCTTCTTAAGAGGCTTCCTACTATAAAATGTGACCTATTTACATTTTAAGTTGAA
GTAGCCCACAATAATGAATAATCAATTTAGATTTTTCTCATCTCCTTTGGGAGAAATTAAATTCAAGCCTCTATTCATTTGATGTTTTAC
AACAAGCTTCAAAGTTGGCCATGTTCATTCACAGTTTGATATTTTGAGACACCAATAAAAGTTTTTTAATAAAAGTTCCCTTGACTTAAA
CTCACCTTCCTAATAGAAGTAGTGATTTGGCTCACGGAAAAATGTTTCCAGAGTCAACATGAGAGGACTGGATGAACCTACAGCCTCACT
CAAGCTGTTGCATCATTGCTGCTGTAGCAACAGAGCCCTCTCTGAATACCCAAAACACACAATTTTCTCCAACAATTCTAATTGCCCACC
CAGTATGGGAATTTGAGAGCCTTTGGTGAATAACCTTGATCACTCTTTTGAAATTTGGTACAACACTTGCACAATCACGGCAACTGTTTG
TAAATATCTTTTCTTCTCCGCCAGTATGTAGACATGCACACCCATTCACAAGTAAGCCCGCAAATTCATTTTCACATTTTCCTCTTGGTT
TGTTTTTATCATGGGTATCACATTGCAGGAAGAGATGCTCTAACTTACAAGAATGGAATTTTCTGACTATCATTGCCCTCTTCAAGGCCT
GATTAGTTTGTAGGGTGGATGGGATACAATGCATGGTCTACAAGGTCCATGTCACCAGCCATGATCTTTAAACAACCTCTTGCACTTTCT
GGCACTGCTGCAATGGCCCATGGTGGACACCTCTGCTGTTTGTCCAAACTTCTGCTAAATAGAGTAGTGTTGGTATTTGTTGTGTTGTGA
ACTCCTTTGTTGTCAGAGAAGACTTCAGCTCTTCAGGTTTGCAAGGGCAAGATGTAAAGCTAGGACTGAAAGGATTGGGTTTTGTTTTTC
GGCCGGCTTTTTTCCATTAGTGCAAAAAACCTGATGCAAGGGCAGCAAGATAAACACAATTTCTTCATTGACCCAGATAAGAACCTGTAG
AAAAGTGAGAGATGCCCCTAAGTTCCTATTTCATTTATCCTAAATAATATCCTGAATAACTACTGATCAGTTTTTTTCTATGTCCAGCCT
TGCTTCACTTTCCAACCTCCAGGCCAAATATTCATTTTGATATTTTACAAAATCCTTCTGGTTTTTACACAGGGCCCTTTTGTGCTGAGA
ATAAAACCAGCTATTGGAACAGACCTCACTGCTTTGTAGAGTCAGAAGTTGACCTAGAGAATGGGTAGCAACAGGTCCTCAGTTTCTCTG
GAGACACCCCCAATCCTTGGGTGAGTGTTGAAACCTGACAACTGACTGTTAGCCTTGTCATCATCCTCACTGGAGATGGAGATGTTGCAG
TCGGAGCCTCACTCCTTCTGGGGCACTGTTTCTTCTCATGGCAACCATTTTGCCTGCCTGGAAACAGCCTGTTGCCTTTGCTAGGGGGCA
AATACACACACTAGCCAAGGAAGTTGGTCCAGCACATCTCTGAGGTTTCTCCCCCATGGACCCATGGAGCGAATTCCCTGAGATAAATGA
TCAGAAAGTTGGCTGTCTGGTGGTTTAATACTCCATAAGAGTTACTTCCCTTATAGAAAGTCATCCTTTGGCATCTAGATTTTTCTACAA
ATCACCTTAACTCCCTCCCTTTCTCTTTCTCCTGGAAAACCTCAGCATTGCATCTCCATGTTGCACAACACAGATCAGATTATCTGGTCA
CTATAGAGATTTGTATATAAAAAAACTACTTTTTTGAGGATTTTGTATATTGTTTTTCTATTTGTTTTCTACAGCTTGAGGAAAGAGCTG
GCAAACTGTGAATCTAACTTGATCTTGTTGCCAGCAGATATATTTTGGCTTCCTGGTAAGAGTCTGTGTTACCAGGGACAATATATTGCC
CTCTGATCAGTATTGCACCCTAAATCCACAAATTCCTCCAGCCCAGTCTTACATTTTTTTAAACAAATCCCCTAGCTTGTTTGCTATTAT
TTATAAAGAGCATTAGAAAATGTATTTATAGACCTGGATGTTATATGTTTAATATTAATTTAGCCTTTAATAATGTTATAGGTTTGTAAC
TATTCTTCAGAAATTATAAAGAACTCAGTGTAGACTGAATTAATCTATTTAGTATCTGTAATTTTGCAGACATATTTTCTTACAGTATTT
TCTATGTAACCACACATGTAGAATTATAACTAATTAGAGCACAAGAAGTTTCTTCAGCAATTTAGAGCTACCAATTGTTTCTTGACTATA
TAGTCACATTTGACAAATTTAAGAACCCAGTCTTTAGTGATGCAATAAACAAAATGAACCATTAAGAACAAGGAATTGCTTAAATCCCTT
AGCTGGTGAGGATATACATCTAAATAATTCATCTTTCTAACTCAAGGAATGGTGCTGATTTTTTAAATGTTTGACACCAGGCCTTGTTTT
TCCAGCTGAGCATTCTCATTTTGCTTTTCTCTAAGACTATCAAAGACAAGGTATTAATAGTAGGATTATTCCTAGATCAGAATGTTTCAT
ACATTCCTAAAGGTTTATGTGGAAATTGGCTTAGGAAAACTTTGAGTAGCAGAGACTGAGGATGAGTGCTAGAGATGAAATCAGGACAGA
TTTGTTGCAGTTAATTCTTGCCAAGCAAATTAGTGGTAAATGTCACATTGTTATGTGAATTGAGCACATATTTTTAAAGAAAGTTTACAA
AAAATTTTTAGAACCAACTATGAGGCAATACTGTATCACTGGGGGCTGGGAGTGGGGGCTTAGAATCATACTGAAATTGTTTAAAAGCAG
CCCAGGTAGTTTCTGTCCTCAGGTGAATAACAGACTATATAACTTCCCCGAAAGGTAAAACGATAGCCACTGCAGAGACGAGGTGTCTTC
CTTCCACCAAATACTTTCTGAGATGGTGGTAGGAGTAGTATTTTTACCGTGGTTTAAAAAGTAGTCAGTTACATAGAAAGTGTATTGGTA
TGTATTTGAACCTGCTCTTCATTAAACAAACAGATTAGATGTACCCTCGACTGGCAATAATTGTATCTATTTTCAAGTACAGCTAGCTGT
CAAAGCATGAAGCTCTTGTGTATACACACTGACACTTGGTTCACGCATGAAGAACAGTGCCTATGCACTTTGTGTAGCTATAATGTAGGT
ATCTAGGTGTAATTTCAGTGAAATGGTGTATAGATGTATTGTAATTTAAATGTATATGTTATTTTTGGCTATTCATCTAAATGCAGTAGA
CATGTTGATCGGTGTTTTGCAAACATTTCTTTTTCCTTCTTAGATAACTAGTCGTGAATCATTTCTCCTCTTTCTCAGTGTGGCTTGGGA
ATATATATGAGTGAAGAATTTATCTGTGAATCCTTTGTACTGATGATTGTTTGAAAGTCTGTGTGTGTCCAGCACCTTTGTAAATACACA
ATTCAGAGCAGGGATGGGCTGGGTGTGTGTCCTGGTTCTTAGTGAAAGGTCATCTCATGTCTGTTTAATACATGGTGAATGCAACTGTGG
AACTTTTGATTACCTAGACTTAGGTAGGTTTAGAATGAGAACATCCATCTACAGTCCTCCTTTGCTTGGTGGATTGGGCTCAGAGGAACA
AAAAGTTAGTCTGACTCTGTGCATATTAGCATCATGTCTTTAGAGAAAGGTCAGCCTCTCTGGTTGCCAAATACTCATCATGATGCTCAT
GACTTAAAGGTTCTGAGGAGCCTTGTCTCCCTTGGATTTTTGAGTCAGGGTACAGGAAAAAACATTGCTGACTAACTAACTGCAAATGCA
TCTGCAGGTGAAACCCTACGAAAGCACAGTTCTGGCTATAAACTTCAGAGTTCTCTGTAAAAAACTTAGAGCACTAGAAGCACAGGAATA
GTGAGTGTACAGCTTATGCGGTTGTAGAGGGGCAACTGATGAACACAGGTCCCACATATATGAGGGAGTATGACGTTCTCTACCTAATAT
GTTCTGTGTGCATGTTTTGAATGATTGAAGATGGGATTAACTAATGCAAGTTTACAGTTGCCTCCTAAAACACACATTCTGTATAATTAT
CGCTAAATACAATGCTGTGAGGTCTATAGTTCCTGTAACCCCTTTCTCCTCCCCAAGGACAGAGAAGAACTAGCCATGTGCTATAGGGAA
CCCTGAGTGCCCTACTCTTTTCCCAAGAAGGGTAAAGCCTACAATATCATCAGGGGGCATGAAGCACATTAATTTGCAGTGGCTGCTTCA
TATGAGGAGATATGGTGGACAGGCTAATTTTTCCTTGAAAATGTGGCTTCTTCAACTCCTTTCAAATTTAGGATGGAATACTTCCTGAAA
TAAAACTGGGCTTTATGCAGGATTCTCTTTGAAAATTCTTGTATGTCCAGAACAAAAGATAAAACTAATTGTATTCCTCACATTCACAAT
CCCCATTGGTCTGAAGTCACGTAGCACAGAGCATCTATAGCACATAGTGTTTAAAGACTAATGAATGCAAAAAGATAAAATCTTCAACTA
ATTTTTGAATTGTTTCTCATATATGCTACTAGAAAATGCCTTGTTGATGAAGCACATTTTGGGTAGTTGAGGTCTTTTGTTTTCGCCTTT
AGCTTTCTAAGCTTTCTTACAATGTGGACTGATTACTGTAACATTTCACGTGTAAAATAACTGGATATTCTTTATATACTGGAAATAACC

>In-frame_ENST00000278360_ENST00000278379_TCGA-HT-7854-01A_PAMR1_chr11_35461175_-_SLC1A2_chr11_35339063_length(amino acids)=952AA_start in transcript=38_stop in transcript=2896
MELGCWTQLGLTFLQLLLISSLPREYTVINEACPGAEWNIMCRECCEYDQIECVCPGKREVVGYTIPCCRNEENECDSCLIHPGCTIFEN
CKSCRNGSWGGTLDDFYVKGFYCAECRAGWYGGDCMRCGQVLRAPKGQILLESYPLNAHCEWTIHAKPGFVIQLRFVMLSLEFDYMCQYD
YVEVRDGDNRDGQIIKRVCGNERPAPIQSIGSSLHVLFHSDGSKNFDGFHAIYEEITACSSSPCFHDGTCVLDKAGSYKCACLAGYTGQR
CENLLEAGKSKIKASEDSLSVLEERNCSDPGGPVNGYQKITGGPGLINGRHAKIGTVVSFFCNNSYVLSGNEKRTCQQNGEWSGKQPICI
KACREPKISDLVRRRVLPMQVQSSANNMPKQVEVRMHDSHLGSEEPKHRHLGLRLCDKLGKNLLLTLTVFGVILGAVCGGLLRLASPIHP
DVVMLIAFPGDILMRMLKMLILPLIISSLITGLSGLDAKASGRLGTRAMVYYMSTTIIAAVLGVILVLAIHPGNPKLKKQLGPGKKNDEV
SSLDAFLDLIRNLFPENLVQACFQQIQTVTKKVLVAPPPDEEANATSAVVSLLNETVTEVPEETKMVIKKGLEFKDGMNVLGLIGFFIAF
GIAMGKMGDQAKLMVDFFNILNEIVMKLVIMIMWYSPLGIACLICGKIIAIKDLEVVARQLGMYMVTVIIGLIIHGGIFLPLIYFVVTRK
NPFSFFAGIFQAWITALGTASSAGTLPVTFRCLEENLGIDKRVTRFVLPVGATINMDGTALYEAVAAIFIAQMNGVVLDGGQIVTVSLTA
TLASVGAASIPSAGLVTMLLILTAVGLPTEDISLLVAVDWLLDRMRTSVNVVGDSFGAGIVYHLSKSELDTIDSQHRVHEDIEMTKTQSI

--------------------------------------------------------------
>In-frame_ENST00000378880_ENST00000278379_TCGA-HT-7854-01A_PAMR1_chr11_35461175_-_SLC1A2_chr11_35339063_length(transcript)=12942nt_BP=1546nt
AGGGCAAAGCCAGCTCCCGTCTCAGCCTCCCGTAGGAAGATCTCCCGGCCTCACCTGAGCGCCCCGCAGCCCTGGGTACCTCTGCTCCCG
CCCAGGGTCCTATGGCCCCTCCTCCCAGCACCCAACACTGGGACCCCACCTGTACCCAGGCTGGCCTCCCTCCCCCGCAGCTTCCTTTGC
AGCCGCCGTCCGCGGGTCTCCAGGCGTGGCCACACCTCCCGGGGCCCCGCAAGGGTTAAGGCAGCAGAGAGGAGAGGTTTGGGCTGACGT
CGCTCTGGCTGAAGGTGGTTCCCCTCAGATGAGGATGGGAGAGCCTGGCGAGCTGAAACCCGAGCTCCCGCTCAGCTGGGGCTCGGGGAG
GTCCCTGTAAAACCCGCCTGCCCCCGGCCTCCCTGGGTCCCTCCTCTCCCTCCCCAGTAGACGCTCGGGCACCAGCCGCGGCAAGGATGG
AGCTGGGTTGCTGGACGCAGTTGGGGCTCACTTTTCTTCAGCTCCTTCTCATCTCGTCCTTGCCAAGAGAGTACACAGTCATTAATGAAG
CCTGCCCTGGAGCAGAGTGGAATATCATGTGTCGGGAGTGCTGTGAATATGATCAGATTGAGTGCGTCTGCCCCGGAAAGAGGGAAGTCG
TGGGTTATACCATCCCTTGCTGCAGGAATGAGGAGAATGAGTGTGACTCCTGCCTGATCCACCCAGGTTGTACCATCTTTGAAAACTGCA
AGAGCTGCCGAAATGGCTCATGGGGGGGTACCTTGGATGACTTCTATGTGAAGGGGTTCTACTGTGCAGAGTGCCGAGCAGGCTGGTACG
GAGGAGACTGCATGCGATGTGGCCAGGTTCTGCGAGCCCCAAAGGGTCAGATTTTGTTGGAAAGCTATCCCCTAAATGCTCACTGTGAAT
GGACCATTCATGCTAAACCTGGGTTTGTCATCCAACTAAGATTTGTCATGTTGAGCCTGGAGTTTGACTACATGTGCCAGTATGACTATG
TTGAGGTTCGTGATGGAGACAACCGCGATGGCCAGATCATCAAGCGTGTCTGTGGCAACGAGCGGCCAGCTCCTATCCAGAGCATAGGAT
CCTCACTCCACGTCCTCTTCCACTCCGATGGCTCCAAGAATTTTGACGGTTTCCATGCCATTTATGAGGAGATCACAGCATGCTCCTCAT
CCCCTTGTTTCCATGACGGCACGTGCGTCCTTGACAAGGCTGGATCTTACAAGTGTGCCTGCTTGGCAGGCTATACTGGGCAGCGCTGTG
AAAATCTCCTTGAAGAAAGAAACTGCTCAGACCCTGGGGGCCCAGTCAATGGGTACCAGAAAATAACAGGGGGCCCTGGGCTTATCAACG
GACGCCATGCTAAAATTGGCACCGTGGTGTCTTTCTTTTGTAACAACTCCTATGTTCTTAGTGGCAATGAGAAAAGAACTTGCCAGCAGA
ATGGAGAGTGGTCAGGGAAACAGCCCATCTGCATAAAAGCCTGCCGAGAACCAAAGATTTCAGACCTGGTGAGAAGGAGAGTTCTTCCGA
TGCAGGTTCAGTCAAGTGCCAACAATATGCCCAAGCAGGTGGAAGTGCGAATGCACGACAGTCATCTTGGCTCAGAGGAACCCAAGCACC
GGCACCTGGGCCTGCGCCTGTGTGACAAGCTGGGGAAGAATCTGCTGCTCACCCTGACGGTGTTTGGTGTCATCCTGGGAGCAGTGTGTG
GAGGGCTTCTTCGCTTGGCATCTCCCATCCACCCTGATGTGGTTATGTTAATAGCCTTCCCAGGGGATATACTCATGAGGATGCTAAAAA
TGCTCATTCTCCCTCTAATCATCTCCAGCTTAATCACAGGGTTGTCAGGCCTGGATGCTAAGGCTAGTGGCCGCTTGGGCACGAGAGCCA
TGGTGTATTACATGTCCACGACCATCATTGCTGCAGTACTGGGGGTCATTCTGGTCTTGGCTATCCATCCAGGCAATCCCAAGCTCAAGA
AGCAGCTGGGGCCTGGGAAGAAGAATGATGAAGTGTCCAGCCTGGATGCCTTCCTGGACCTTATTCGAAATCTCTTCCCTGAAAACCTTG
TCCAAGCCTGCTTTCAACAGATTCAAACAGTGACGAAGAAAGTCCTGGTTGCACCACCGCCGGACGAGGAGGCCAACGCAACCAGCGCTG
TTGTCTCTCTGTTGAACGAGACTGTGACTGAGGTGCCGGAGGAGACTAAGATGGTTATCAAGAAGGGCCTGGAGTTCAAGGATGGGATGA
ACGTCTTAGGTCTGATAGGGTTTTTCATTGCTTTTGGCATCGCTATGGGGAAGATGGGAGATCAGGCCAAGCTGATGGTGGATTTCTTCA
ACATTTTGAATGAGATTGTAATGAAGTTAGTGATCATGATCATGTGGTACTCTCCCCTGGGTATCGCCTGCCTGATCTGTGGAAAGATCA
TTGCAATCAAGGACTTAGAAGTGGTTGCTAGGCAACTGGGGATGTACATGGTAACAGTGATCATAGGCCTCATCATCCACGGGGGCATCT
TTCTCCCCTTGATTTACTTTGTAGTGACCAGGAAAAACCCCTTCTCCTTTTTTGCTGGCATTTTCCAAGCTTGGATCACTGCCCTGGGCA
CCGCTTCCAGTGCTGGAACTTTGCCTGTCACCTTTCGTTGCCTGGAAGAAAATCTGGGGATTGATAAGCGTGTGACTAGATTCGTCCTTC
CTGTTGGAGCAACCATTAACATGGATGGTACAGCCCTTTATGAAGCGGTAGCCGCCATCTTTATAGCCCAAATGAATGGTGTTGTCCTGG
ATGGAGGACAGATTGTGACTGTAAGCCTCACAGCCACCCTGGCAAGCGTCGGCGCGGCCAGTATCCCCAGTGCCGGGCTGGTCACCATGC
TCCTCATTCTGACAGCCGTGGGCCTGCCAACAGAGGACATCAGCCTGCTGGTGGCTGTGGACTGGCTGCTGGACAGGATGAGAACTTCAG
TCAATGTTGTGGGTGACTCTTTTGGGGCTGGGATAGTCTATCACCTCTCCAAGTCTGAGCTGGATACCATTGACTCCCAGCATCGAGTGC
ATGAAGATATTGAAATGACCAAGACTCAATCCATTTATGATGACATGAAGAACCACAGGGAAAGCAACTCTAATCAATGTGTCTATGCTG
CACACAACTCTGTCATAGTAGATGAATGCAAGGTAACTCTGGCAGCCAATGGAAAGTCAGCCGACTGCAGTGTTGAGGAAGAACCTTGGA
AACGTGAGAAATAAGGATATGAGTCTCAGCAAATTCTTGAATAAACTCCCCAGCGTATCCTATGGTAACTGATGATATAAACAAGCTTTC
TTTAAAAAGGAAAAAAATGCGTATATTTCTATGTTTACTTAATCTGTTAGCCGAGGCTTAGAGGAGCTCTTGTGAGTCAGTGATGACAGG
CACGGTGCTGTGTCTTTGCCAAATAATGCTTTATAACCGTCTAATTTTCTCACTTGTATTATTATTTGAATGGATGCTGCTGGAGGAATC
AGTTGGAATTGAAGACACGTTCTTGCCAGCTTCCCTTTTCTCCCAAGATGCAGAAATGTGGATGCTCTTTTCCCAGGGGACATGAGTAAA
GCAGTGTGGTACACTCCAGGGACTTGGGAAAATGAGCAAACACACAGCGTGTTATTCCTTAAAGTGTTCTCCATGTCTCGCCTTGTTATG
CACAAGAGATTCTATTAAAAGCCTCTAGAAGTAACTCCCCTTAAAATGTCTAGTAAAGCTTGCACATGGATTGATTAAAAGCAAATACCT
GTCTTAGGGAATTCTGACAATTTATCTTCCATATGCTCTTTAAGTAAAATGTTTCAAAGACAGTTTTAAAGGGAGCCATGCTCTTAAAGG
CAGTTGATTAAAGAACCTGTTACATCTCTGCCTTACCCTGTGTAATCTGTGAGAACAATGGTTGAAATTTCAAAGTATGTTTCATTATTC
TTTCTAAATTTGATAATTGATTAGGAAGTATTTTATATATAACCACTGTAGATATTGACAAAAGTAAGAGAGCACAGTCAACATAAAGTT
TAACCAGAGTTAAATATTCAAATTTATTTATGTTCGGTTTGCCTTCACCTGGTGTAGTAAAATCAAATGAGATTATTTGGTATGTGTTTT
GCTTTGTTTAACCCAAAAGATTATTTTTTGGTTCCTAAAGAAAAAGATATTTTTAATCTGTCAATTATTTCAGTCATCATCTCATCGTCC
TAGAAAGCCTGGTCATTTTACTGTCCTCACACATGGAAGACACTTGTGTTGGCTGTGCCTCTTTTAATGTCATCTCTTGATGAAACAAAA
ATACTGGTATTTATCCAATATGTTGAAAGCGTTTTGTTATCTTCTATCAAAGCACATAAAACCAGTTATAGGACACAGTTGGAAGCAGAG
CCAGTCTTCCTCCTCAGTCTTCTCAGTAGAAAGGAACAGAAAACAAACATCTGTGCAAAACCCTATAAAAGTGATATTCCTATGGCAGAG
TCCAGGCAGCCTTGAACAATGACATGGCAACAAAGGATGGCTCTGTACAACTTCACAGATGGAATCTTGTTTAAGGCTGTGAAGTTTTAA
GGAATAAATAATATAATTGGTGTAGCACAGTGCCTTGCATGCAGTAGGCAGCCAACAAATCCTTAATGATTGGTAATGCAAGCTAAAATT
TTTAATGTCTCTACTATCCTTTTTTATTGAATAACGCACAGTATTTTCCTAAGGTTGCTGGGTTTGGGAGTAAGCTTGGGACTTGAATCA
TTGAGAAATAAAGCACATTTGACTCTAAGAAGTATGTAGAACCTTGTTTATAGGTGAGAATAGGCTGTATTATATGAAACCAGCGGAGGG
ATGCTGAGACAGTCATGGTTTATAGAATCCAAATTCTCTGAGATGAGGGTGCTTATGGACCTCAAATAGCCTTTCTTATCTGCTCCTTGT
GACTTCTCTCTTTTAAATCAGATACCTTTGAAACATACAAGAGACATGAGATTCCAGTTGTTTTTGTCTCCTAAACCCTAGTGATTTTTG
GATAAGGATCACTACTGAACAGTATTAGGCAACTTTTCATTTTTGCTTTTCAAATGACATTGGTCTTTATTTCCAGTAGATGGGCAGTAA
ACAGGGTCAGGGTGGTCAAGGGATATGATTAAGTGTAGTAGTAGAAAATGCATTCTTTTTTTTTTTTTTTTTTTAGACAGAGTCTTGCTC
TGTTGCTCAGGCTGGAGTACAGTGGCACGATCTCAGCTCACTGCACTGCAATGTCCACCTCTCTAGTTCAAGCGATTCTCCTGTCTCAGC
CTCCCGAGTAGCTGGGACTACAGGCACATGCCACCATGCCTGGCTAATTTTTTGTATTTTTAGTACAGATGGGTTTCATTATGTTAGCCA
GGATGGTCTCGATCTCCTGACCTCATGATCCACCCGCCATGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGTGCCCGGCCAG
AAAATACATTCTTTACAGCAAATGTTATAGGTTAAGGAGACAGTTCCTGGGTTTAGCTGTGAAACTGTTTAGGATTTTCTTTAAGTGGTG
TTCCCAAGAGCTTTTTTCTGGTAAGTTGGAGGCTATAGGCAAAGCGTCTAGGAGCTTGTTGTTTTTTGCTATGGAAGGCCAGCTTTGGGA
TCTATATACATGGGCATGTTTCTCAATGGAGTGGTCACAGGATTCTCTTCTCAGAACTCTGCCTGAAACCTTTCCGGTGTGTTTTGTCTT
CAACTTTTTCCTAGCTATCCTATTAGCCTGTAAATATGTCAGCAGACAATGTGTTTGGAAGAAACAAGGTGTACAACTTCACAAAGCAAG
TTTTTTCTGGTCTGAGACTTACTGTGTGCAGGAAGTCTCGTGAGAATATACTTAGAAAATCACACTTATCTGGAAATTCAATAAGTCATA
TTAAAAATATACAATTTCTTGAACTCAGGACTAGCCTGAAAATCCAAAATGCATGTAGAGTTGACATGTTGACATATGTCTATGTCCTCT
GTTTTTATTTAAGCCTCATTTATTTCTCCCTTGCCATGCCCATTTGGGATTTTCTTTGCCCAGCATATGTGCCATAAACAGAACAAATGG
ATCCAGGGTATACCTCTAATAACCTTTATCTAAATAGAATACATTTAACCTGTCAATTATATGTATAGATTTATCCTAATTGGTTCAACA
TATATATGAATGCTTGTAATAGTCTGTTACTATTTGATAATGCATAAATGTTATATTTATATACAGTTACAGCAGGCCAGAAACATACAT
ACACTGCATCCTGTAAGGTCTGTAAATCAGGGCTTCGGCAATGCCATTTTGCTATAGACTCATTCATGTTTTTTAGGAATCAGAATCATT
TCAGGAGAAAACCAACTAAGTAGACTTTAATTCTTCTCTTTCTCATTCTTGCCCTTTGAGAAACCCAAGTGGAATCATCACTTAATTACT
TACTCAAATTCAATGAATCAAATCCAATCCAATCAGTGAGAAGAATAGCTTATCTTTCAAGGTAATACTTTACCTTAGATCTTTGAGGGC
ATGCTTCCCATACAAAGAGCATCAGAAAATCAGGGCAATCATCTAGATCTCACAGATCTTCAACATAGGACTCTAGGTTATGAGAGCTGA
ACCACATAGCTATCAGTTTCAGTTTTTACTTCCTATTGAGTGTGTAGAAACACAGCCTATGGTTTTGCTGTCTGCGGAAGTTACCATACC
CTGTAAAAGACAAATATTTCTTTCTCCTCTCGAACCACTAGTCAGCCTGGATATTCATGAAAGCTGAAAGAAGGGGTGCCAAAATGCCTA
GCTCCTGGATTTAGACTCATGGAATATGAGAAAGGCTTAGGGAAAATTCAAGTCATGGGGAGATTCCTGCTAGGTGATGCCAGGAATCTC
AATGACCTGTTGATTAGAGGGTCTCTGGTCATTTCCACTTGTGTGTGGAGAAATACATCATTTGCATATGTATCTAGTCAAGAAGCCCTT
TTGGAGCAAAGTGGTTGGGAAACTCATTTACTGGGTCCACCAAAGGAAACCCAATTCTGCCATGTTTTTGCAAATACTACACGTCCCTTT
GCTCTCAATAGCAAAAGTGATGTTATAGTTTTTTTTACTTTTGTCAGAATCAAGGCTTCGGCCACCTGTGCAATATTTTCCCATGGAATG
CAGCAGTAAATCCAAGTAGGTATATCCGTGCTCAGAGAGAATTCTCCATAGTTCTGACTCCTGAAAAACAAGTCTCATTAGCTCTCATCT
AGTTTGATGACTAAAAGTGCACAGCAGTTATACCCCAGTGGAAGTGATTTTTCTCACCTAGCTGCTCTCTAACTCTTACGGCTATCTAGT
TGTCTGAGCTGCTGGTTTGTTTTACTTATTCTCCAACTGAACTCATTCCAAACCAAGAAAAAGGACCAAATGAAATTTTCAGTTATTATC
ATACTTGCTCCTTGAATAAGAATGCTAGAGTCTGGAGGCAGAAGAAGACTAAGTTAAAAAAAAAACAGCCTGAAGGAATTCTGGAGTGAG
TTTTGTAAGTCTAATTGTCAAAGAAGATAAATGGTCTCAGTATCTGTAGTAATTTCTGGTTAAGCCTAGAGGGATCACTGAGTGCCAATC
CAAGCAGGTGGCACTAGAGGCAGATTGTTCTCCTAGCATAGAGTGAGTTTCCAGCTGCTCATGACACATTTTCTTATGATTTTCCCTAAA
AGAAAACCAAATTTTCTACTCCACCTCTTCCTTTCCTATCATTCCACTTATTGTTGCTGCTTTGCTAACAGCCAGCTTAGTAAGCCATCA
CACAAGTTAGTGTGAGGCTTGGTTTTAAAATAGATAACAGAGAATCTTGATTAAATAGTATCCAACTTTGTAGCATAACACAGCTAATTC
AGGCAATGACATAGAGATGATAAGAAACAACATGGTTTGGTAGAGGGAACATTTGATTTAGACTCTGCCCATTTTTAGCTGTATGACTTA
CATAAGTCATTTTGTGTCCAAGCCTCATTTTCTCCCATATGAAAAGTGAAGGGGTTGGATTAAATGACTAAAATCCCCTTCCAGCCCTAT
GAGCCCAATGTATTATGATCTCTGCTTTGTTTCCTTCTTAAGAGGCTTCCTACTATAAAATGTGACCTATTTACATTTTAAGTTGAAGTA
GCCCACAATAATGAATAATCAATTTAGATTTTTCTCATCTCCTTTGGGAGAAATTAAATTCAAGCCTCTATTCATTTGATGTTTTACAAC
AAGCTTCAAAGTTGGCCATGTTCATTCACAGTTTGATATTTTGAGACACCAATAAAAGTTTTTTAATAAAAGTTCCCTTGACTTAAACTC
ACCTTCCTAATAGAAGTAGTGATTTGGCTCACGGAAAAATGTTTCCAGAGTCAACATGAGAGGACTGGATGAACCTACAGCCTCACTCAA
GCTGTTGCATCATTGCTGCTGTAGCAACAGAGCCCTCTCTGAATACCCAAAACACACAATTTTCTCCAACAATTCTAATTGCCCACCCAG
TATGGGAATTTGAGAGCCTTTGGTGAATAACCTTGATCACTCTTTTGAAATTTGGTACAACACTTGCACAATCACGGCAACTGTTTGTAA
ATATCTTTTCTTCTCCGCCAGTATGTAGACATGCACACCCATTCACAAGTAAGCCCGCAAATTCATTTTCACATTTTCCTCTTGGTTTGT
TTTTATCATGGGTATCACATTGCAGGAAGAGATGCTCTAACTTACAAGAATGGAATTTTCTGACTATCATTGCCCTCTTCAAGGCCTGAT
TAGTTTGTAGGGTGGATGGGATACAATGCATGGTCTACAAGGTCCATGTCACCAGCCATGATCTTTAAACAACCTCTTGCACTTTCTGGC
ACTGCTGCAATGGCCCATGGTGGACACCTCTGCTGTTTGTCCAAACTTCTGCTAAATAGAGTAGTGTTGGTATTTGTTGTGTTGTGAACT
CCTTTGTTGTCAGAGAAGACTTCAGCTCTTCAGGTTTGCAAGGGCAAGATGTAAAGCTAGGACTGAAAGGATTGGGTTTTGTTTTTCGGC
CGGCTTTTTTCCATTAGTGCAAAAAACCTGATGCAAGGGCAGCAAGATAAACACAATTTCTTCATTGACCCAGATAAGAACCTGTAGAAA
AGTGAGAGATGCCCCTAAGTTCCTATTTCATTTATCCTAAATAATATCCTGAATAACTACTGATCAGTTTTTTTCTATGTCCAGCCTTGC
TTCACTTTCCAACCTCCAGGCCAAATATTCATTTTGATATTTTACAAAATCCTTCTGGTTTTTACACAGGGCCCTTTTGTGCTGAGAATA
AAACCAGCTATTGGAACAGACCTCACTGCTTTGTAGAGTCAGAAGTTGACCTAGAGAATGGGTAGCAACAGGTCCTCAGTTTCTCTGGAG
ACACCCCCAATCCTTGGGTGAGTGTTGAAACCTGACAACTGACTGTTAGCCTTGTCATCATCCTCACTGGAGATGGAGATGTTGCAGTCG
GAGCCTCACTCCTTCTGGGGCACTGTTTCTTCTCATGGCAACCATTTTGCCTGCCTGGAAACAGCCTGTTGCCTTTGCTAGGGGGCAAAT
ACACACACTAGCCAAGGAAGTTGGTCCAGCACATCTCTGAGGTTTCTCCCCCATGGACCCATGGAGCGAATTCCCTGAGATAAATGATCA
GAAAGTTGGCTGTCTGGTGGTTTAATACTCCATAAGAGTTACTTCCCTTATAGAAAGTCATCCTTTGGCATCTAGATTTTTCTACAAATC
ACCTTAACTCCCTCCCTTTCTCTTTCTCCTGGAAAACCTCAGCATTGCATCTCCATGTTGCACAACACAGATCAGATTATCTGGTCACTA
TAGAGATTTGTATATAAAAAAACTACTTTTTTGAGGATTTTGTATATTGTTTTTCTATTTGTTTTCTACAGCTTGAGGAAAGAGCTGGCA
AACTGTGAATCTAACTTGATCTTGTTGCCAGCAGATATATTTTGGCTTCCTGGTAAGAGTCTGTGTTACCAGGGACAATATATTGCCCTC
TGATCAGTATTGCACCCTAAATCCACAAATTCCTCCAGCCCAGTCTTACATTTTTTTAAACAAATCCCCTAGCTTGTTTGCTATTATTTA
TAAAGAGCATTAGAAAATGTATTTATAGACCTGGATGTTATATGTTTAATATTAATTTAGCCTTTAATAATGTTATAGGTTTGTAACTAT
TCTTCAGAAATTATAAAGAACTCAGTGTAGACTGAATTAATCTATTTAGTATCTGTAATTTTGCAGACATATTTTCTTACAGTATTTTCT
ATGTAACCACACATGTAGAATTATAACTAATTAGAGCACAAGAAGTTTCTTCAGCAATTTAGAGCTACCAATTGTTTCTTGACTATATAG
TCACATTTGACAAATTTAAGAACCCAGTCTTTAGTGATGCAATAAACAAAATGAACCATTAAGAACAAGGAATTGCTTAAATCCCTTAGC
TGGTGAGGATATACATCTAAATAATTCATCTTTCTAACTCAAGGAATGGTGCTGATTTTTTAAATGTTTGACACCAGGCCTTGTTTTTCC
AGCTGAGCATTCTCATTTTGCTTTTCTCTAAGACTATCAAAGACAAGGTATTAATAGTAGGATTATTCCTAGATCAGAATGTTTCATACA
TTCCTAAAGGTTTATGTGGAAATTGGCTTAGGAAAACTTTGAGTAGCAGAGACTGAGGATGAGTGCTAGAGATGAAATCAGGACAGATTT
GTTGCAGTTAATTCTTGCCAAGCAAATTAGTGGTAAATGTCACATTGTTATGTGAATTGAGCACATATTTTTAAAGAAAGTTTACAAAAA
ATTTTTAGAACCAACTATGAGGCAATACTGTATCACTGGGGGCTGGGAGTGGGGGCTTAGAATCATACTGAAATTGTTTAAAAGCAGCCC
AGGTAGTTTCTGTCCTCAGGTGAATAACAGACTATATAACTTCCCCGAAAGGTAAAACGATAGCCACTGCAGAGACGAGGTGTCTTCCTT
CCACCAAATACTTTCTGAGATGGTGGTAGGAGTAGTATTTTTACCGTGGTTTAAAAAGTAGTCAGTTACATAGAAAGTGTATTGGTATGT
ATTTGAACCTGCTCTTCATTAAACAAACAGATTAGATGTACCCTCGACTGGCAATAATTGTATCTATTTTCAAGTACAGCTAGCTGTCAA
AGCATGAAGCTCTTGTGTATACACACTGACACTTGGTTCACGCATGAAGAACAGTGCCTATGCACTTTGTGTAGCTATAATGTAGGTATC
TAGGTGTAATTTCAGTGAAATGGTGTATAGATGTATTGTAATTTAAATGTATATGTTATTTTTGGCTATTCATCTAAATGCAGTAGACAT
GTTGATCGGTGTTTTGCAAACATTTCTTTTTCCTTCTTAGATAACTAGTCGTGAATCATTTCTCCTCTTTCTCAGTGTGGCTTGGGAATA
TATATGAGTGAAGAATTTATCTGTGAATCCTTTGTACTGATGATTGTTTGAAAGTCTGTGTGTGTCCAGCACCTTTGTAAATACACAATT
CAGAGCAGGGATGGGCTGGGTGTGTGTCCTGGTTCTTAGTGAAAGGTCATCTCATGTCTGTTTAATACATGGTGAATGCAACTGTGGAAC
TTTTGATTACCTAGACTTAGGTAGGTTTAGAATGAGAACATCCATCTACAGTCCTCCTTTGCTTGGTGGATTGGGCTCAGAGGAACAAAA
AGTTAGTCTGACTCTGTGCATATTAGCATCATGTCTTTAGAGAAAGGTCAGCCTCTCTGGTTGCCAAATACTCATCATGATGCTCATGAC
TTAAAGGTTCTGAGGAGCCTTGTCTCCCTTGGATTTTTGAGTCAGGGTACAGGAAAAAACATTGCTGACTAACTAACTGCAAATGCATCT
GCAGGTGAAACCCTACGAAAGCACAGTTCTGGCTATAAACTTCAGAGTTCTCTGTAAAAAACTTAGAGCACTAGAAGCACAGGAATAGTG
AGTGTACAGCTTATGCGGTTGTAGAGGGGCAACTGATGAACACAGGTCCCACATATATGAGGGAGTATGACGTTCTCTACCTAATATGTT
CTGTGTGCATGTTTTGAATGATTGAAGATGGGATTAACTAATGCAAGTTTACAGTTGCCTCCTAAAACACACATTCTGTATAATTATCGC
TAAATACAATGCTGTGAGGTCTATAGTTCCTGTAACCCCTTTCTCCTCCCCAAGGACAGAGAAGAACTAGCCATGTGCTATAGGGAACCC
TGAGTGCCCTACTCTTTTCCCAAGAAGGGTAAAGCCTACAATATCATCAGGGGGCATGAAGCACATTAATTTGCAGTGGCTGCTTCATAT
GAGGAGATATGGTGGACAGGCTAATTTTTCCTTGAAAATGTGGCTTCTTCAACTCCTTTCAAATTTAGGATGGAATACTTCCTGAAATAA
AACTGGGCTTTATGCAGGATTCTCTTTGAAAATTCTTGTATGTCCAGAACAAAAGATAAAACTAATTGTATTCCTCACATTCACAATCCC
CATTGGTCTGAAGTCACGTAGCACAGAGCATCTATAGCACATAGTGTTTAAAGACTAATGAATGCAAAAAGATAAAATCTTCAACTAATT
TTTGAATTGTTTCTCATATATGCTACTAGAAAATGCCTTGTTGATGAAGCACATTTTGGGTAGTTGAGGTCTTTTGTTTTCGCCTTTAGC
TTTCTAAGCTTTCTTACAATGTGGACTGATTACTGTAACATTTCACGTGTAAAATAACTGGATATTCTTTATATACTGGAAATAACCTGT

>In-frame_ENST00000378880_ENST00000278379_TCGA-HT-7854-01A_PAMR1_chr11_35461175_-_SLC1A2_chr11_35339063_length(amino acids)=958AA_start in transcript=377_stop in transcript=3253
MPPASLGPSSPSPVDARAPAAARMELGCWTQLGLTFLQLLLISSLPREYTVINEACPGAEWNIMCRECCEYDQIECVCPGKREVVGYTIP
CCRNEENECDSCLIHPGCTIFENCKSCRNGSWGGTLDDFYVKGFYCAECRAGWYGGDCMRCGQVLRAPKGQILLESYPLNAHCEWTIHAK
PGFVIQLRFVMLSLEFDYMCQYDYVEVRDGDNRDGQIIKRVCGNERPAPIQSIGSSLHVLFHSDGSKNFDGFHAIYEEITACSSSPCFHD
GTCVLDKAGSYKCACLAGYTGQRCENLLEERNCSDPGGPVNGYQKITGGPGLINGRHAKIGTVVSFFCNNSYVLSGNEKRTCQQNGEWSG
KQPICIKACREPKISDLVRRRVLPMQVQSSANNMPKQVEVRMHDSHLGSEEPKHRHLGLRLCDKLGKNLLLTLTVFGVILGAVCGGLLRL
ASPIHPDVVMLIAFPGDILMRMLKMLILPLIISSLITGLSGLDAKASGRLGTRAMVYYMSTTIIAAVLGVILVLAIHPGNPKLKKQLGPG
KKNDEVSSLDAFLDLIRNLFPENLVQACFQQIQTVTKKVLVAPPPDEEANATSAVVSLLNETVTEVPEETKMVIKKGLEFKDGMNVLGLI
GFFIAFGIAMGKMGDQAKLMVDFFNILNEIVMKLVIMIMWYSPLGIACLICGKIIAIKDLEVVARQLGMYMVTVIIGLIIHGGIFLPLIY
FVVTRKNPFSFFAGIFQAWITALGTASSAGTLPVTFRCLEENLGIDKRVTRFVLPVGATINMDGTALYEAVAAIFIAQMNGVVLDGGQIV
TVSLTATLASVGAASIPSAGLVTMLLILTAVGLPTEDISLLVAVDWLLDRMRTSVNVVGDSFGAGIVYHLSKSELDTIDSQHRVHEDIEM

--------------------------------------------------------------
>In-frame_ENST00000378878_ENST00000278379_TCGA-HT-7854-01A_PAMR1_chr11_35461175_-_SLC1A2_chr11_35339063_length(transcript)=12181nt_BP=785nt
GCACCAGCCGCGGCAAGGATGGAGCTGGGTTGCTGGACGCAGTTGGGGCTCACTTTTCTTCAGCTCCTTCTCATCTCGTCCTTGCCAAGA
GAGTACACAGTCATTAATGAAGCCTGCCCTGGAGCAGAGTGGAATATCATGTGTCGGGAGTGCTGTGAATATGATCAGATTGAGTGCGTC
TGCCCCGGAAAGAGGGAAGTCGTGGGTTATACCATCCCTTGCTGCAGGAATGAGGAGAATGAGTGTGACTCCTGCCTGATCCACCCAGGT
TGTACCATCTTTGAAAACTGCAAGAGCTGCCGAAATGGCTCATGGGGGGGTACCTTGGATGACTTCTATGTGAAGGGGTTCTACTGTGCA
GAGTGCCGAGCAGGCTGGTACGGAGGAGACTGCATGCCATGCTCCTCATCCCCTTGTTTCCATGACGGCACGTGCGTCCTTGACAAGGCT
GGATCTTACAAGTGTGCCTGCTTGGCAGGCTATACTGGGCAGCGCTGTGAAAATCTCCTTGAAGAAAGAAACTGCTCAGACCCTGGGGGC
CCAGTCAATGGGTACCAGAAAATAACAGGGGGCCCTGGGCTTATCAACGGACGCCATGCTAAAATTGGCACCGTGGTGTCTTTCTTTTGT
AACAACTCCTATGTTCTTAGTGGCAATGAGAAAAGAACTTGCCAGCAGAATGGAGAGTGGTCAGGGAAACAGCCCATCTGCATAAAAGCC
TGCCGAGAACCAAAGATTTCAGACCTGGTGAGAAGGAGAGTTCTTCCGATGCAGGTTCAGTCAAGTGCCAACAATATGCCCAAGCAGGTG
GAAGTGCGAATGCACGACAGTCATCTTGGCTCAGAGGAACCCAAGCACCGGCACCTGGGCCTGCGCCTGTGTGACAAGCTGGGGAAGAAT
CTGCTGCTCACCCTGACGGTGTTTGGTGTCATCCTGGGAGCAGTGTGTGGAGGGCTTCTTCGCTTGGCATCTCCCATCCACCCTGATGTG
GTTATGTTAATAGCCTTCCCAGGGGATATACTCATGAGGATGCTAAAAATGCTCATTCTCCCTCTAATCATCTCCAGCTTAATCACAGGG
TTGTCAGGCCTGGATGCTAAGGCTAGTGGCCGCTTGGGCACGAGAGCCATGGTGTATTACATGTCCACGACCATCATTGCTGCAGTACTG
GGGGTCATTCTGGTCTTGGCTATCCATCCAGGCAATCCCAAGCTCAAGAAGCAGCTGGGGCCTGGGAAGAAGAATGATGAAGTGTCCAGC
CTGGATGCCTTCCTGGACCTTATTCGAAATCTCTTCCCTGAAAACCTTGTCCAAGCCTGCTTTCAACAGATTCAAACAGTGACGAAGAAA
GTCCTGGTTGCACCACCGCCGGACGAGGAGGCCAACGCAACCAGCGCTGTTGTCTCTCTGTTGAACGAGACTGTGACTGAGGTGCCGGAG
GAGACTAAGATGGTTATCAAGAAGGGCCTGGAGTTCAAGGATGGGATGAACGTCTTAGGTCTGATAGGGTTTTTCATTGCTTTTGGCATC
GCTATGGGGAAGATGGGAGATCAGGCCAAGCTGATGGTGGATTTCTTCAACATTTTGAATGAGATTGTAATGAAGTTAGTGATCATGATC
ATGTGGTACTCTCCCCTGGGTATCGCCTGCCTGATCTGTGGAAAGATCATTGCAATCAAGGACTTAGAAGTGGTTGCTAGGCAACTGGGG
ATGTACATGGTAACAGTGATCATAGGCCTCATCATCCACGGGGGCATCTTTCTCCCCTTGATTTACTTTGTAGTGACCAGGAAAAACCCC
TTCTCCTTTTTTGCTGGCATTTTCCAAGCTTGGATCACTGCCCTGGGCACCGCTTCCAGTGCTGGAACTTTGCCTGTCACCTTTCGTTGC
CTGGAAGAAAATCTGGGGATTGATAAGCGTGTGACTAGATTCGTCCTTCCTGTTGGAGCAACCATTAACATGGATGGTACAGCCCTTTAT
GAAGCGGTAGCCGCCATCTTTATAGCCCAAATGAATGGTGTTGTCCTGGATGGAGGACAGATTGTGACTGTAAGCCTCACAGCCACCCTG
GCAAGCGTCGGCGCGGCCAGTATCCCCAGTGCCGGGCTGGTCACCATGCTCCTCATTCTGACAGCCGTGGGCCTGCCAACAGAGGACATC
AGCCTGCTGGTGGCTGTGGACTGGCTGCTGGACAGGATGAGAACTTCAGTCAATGTTGTGGGTGACTCTTTTGGGGCTGGGATAGTCTAT
CACCTCTCCAAGTCTGAGCTGGATACCATTGACTCCCAGCATCGAGTGCATGAAGATATTGAAATGACCAAGACTCAATCCATTTATGAT
GACATGAAGAACCACAGGGAAAGCAACTCTAATCAATGTGTCTATGCTGCACACAACTCTGTCATAGTAGATGAATGCAAGGTAACTCTG
GCAGCCAATGGAAAGTCAGCCGACTGCAGTGTTGAGGAAGAACCTTGGAAACGTGAGAAATAAGGATATGAGTCTCAGCAAATTCTTGAA
TAAACTCCCCAGCGTATCCTATGGTAACTGATGATATAAACAAGCTTTCTTTAAAAAGGAAAAAAATGCGTATATTTCTATGTTTACTTA
ATCTGTTAGCCGAGGCTTAGAGGAGCTCTTGTGAGTCAGTGATGACAGGCACGGTGCTGTGTCTTTGCCAAATAATGCTTTATAACCGTC
TAATTTTCTCACTTGTATTATTATTTGAATGGATGCTGCTGGAGGAATCAGTTGGAATTGAAGACACGTTCTTGCCAGCTTCCCTTTTCT
CCCAAGATGCAGAAATGTGGATGCTCTTTTCCCAGGGGACATGAGTAAAGCAGTGTGGTACACTCCAGGGACTTGGGAAAATGAGCAAAC
ACACAGCGTGTTATTCCTTAAAGTGTTCTCCATGTCTCGCCTTGTTATGCACAAGAGATTCTATTAAAAGCCTCTAGAAGTAACTCCCCT
TAAAATGTCTAGTAAAGCTTGCACATGGATTGATTAAAAGCAAATACCTGTCTTAGGGAATTCTGACAATTTATCTTCCATATGCTCTTT
AAGTAAAATGTTTCAAAGACAGTTTTAAAGGGAGCCATGCTCTTAAAGGCAGTTGATTAAAGAACCTGTTACATCTCTGCCTTACCCTGT
GTAATCTGTGAGAACAATGGTTGAAATTTCAAAGTATGTTTCATTATTCTTTCTAAATTTGATAATTGATTAGGAAGTATTTTATATATA
ACCACTGTAGATATTGACAAAAGTAAGAGAGCACAGTCAACATAAAGTTTAACCAGAGTTAAATATTCAAATTTATTTATGTTCGGTTTG
CCTTCACCTGGTGTAGTAAAATCAAATGAGATTATTTGGTATGTGTTTTGCTTTGTTTAACCCAAAAGATTATTTTTTGGTTCCTAAAGA
AAAAGATATTTTTAATCTGTCAATTATTTCAGTCATCATCTCATCGTCCTAGAAAGCCTGGTCATTTTACTGTCCTCACACATGGAAGAC
ACTTGTGTTGGCTGTGCCTCTTTTAATGTCATCTCTTGATGAAACAAAAATACTGGTATTTATCCAATATGTTGAAAGCGTTTTGTTATC
TTCTATCAAAGCACATAAAACCAGTTATAGGACACAGTTGGAAGCAGAGCCAGTCTTCCTCCTCAGTCTTCTCAGTAGAAAGGAACAGAA
AACAAACATCTGTGCAAAACCCTATAAAAGTGATATTCCTATGGCAGAGTCCAGGCAGCCTTGAACAATGACATGGCAACAAAGGATGGC
TCTGTACAACTTCACAGATGGAATCTTGTTTAAGGCTGTGAAGTTTTAAGGAATAAATAATATAATTGGTGTAGCACAGTGCCTTGCATG
CAGTAGGCAGCCAACAAATCCTTAATGATTGGTAATGCAAGCTAAAATTTTTAATGTCTCTACTATCCTTTTTTATTGAATAACGCACAG
TATTTTCCTAAGGTTGCTGGGTTTGGGAGTAAGCTTGGGACTTGAATCATTGAGAAATAAAGCACATTTGACTCTAAGAAGTATGTAGAA
CCTTGTTTATAGGTGAGAATAGGCTGTATTATATGAAACCAGCGGAGGGATGCTGAGACAGTCATGGTTTATAGAATCCAAATTCTCTGA
GATGAGGGTGCTTATGGACCTCAAATAGCCTTTCTTATCTGCTCCTTGTGACTTCTCTCTTTTAAATCAGATACCTTTGAAACATACAAG
AGACATGAGATTCCAGTTGTTTTTGTCTCCTAAACCCTAGTGATTTTTGGATAAGGATCACTACTGAACAGTATTAGGCAACTTTTCATT
TTTGCTTTTCAAATGACATTGGTCTTTATTTCCAGTAGATGGGCAGTAAACAGGGTCAGGGTGGTCAAGGGATATGATTAAGTGTAGTAG
TAGAAAATGCATTCTTTTTTTTTTTTTTTTTTTAGACAGAGTCTTGCTCTGTTGCTCAGGCTGGAGTACAGTGGCACGATCTCAGCTCAC
TGCACTGCAATGTCCACCTCTCTAGTTCAAGCGATTCTCCTGTCTCAGCCTCCCGAGTAGCTGGGACTACAGGCACATGCCACCATGCCT
GGCTAATTTTTTGTATTTTTAGTACAGATGGGTTTCATTATGTTAGCCAGGATGGTCTCGATCTCCTGACCTCATGATCCACCCGCCATG
GCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGTGCCCGGCCAGAAAATACATTCTTTACAGCAAATGTTATAGGTTAAGGAGAC
AGTTCCTGGGTTTAGCTGTGAAACTGTTTAGGATTTTCTTTAAGTGGTGTTCCCAAGAGCTTTTTTCTGGTAAGTTGGAGGCTATAGGCA
AAGCGTCTAGGAGCTTGTTGTTTTTTGCTATGGAAGGCCAGCTTTGGGATCTATATACATGGGCATGTTTCTCAATGGAGTGGTCACAGG
ATTCTCTTCTCAGAACTCTGCCTGAAACCTTTCCGGTGTGTTTTGTCTTCAACTTTTTCCTAGCTATCCTATTAGCCTGTAAATATGTCA
GCAGACAATGTGTTTGGAAGAAACAAGGTGTACAACTTCACAAAGCAAGTTTTTTCTGGTCTGAGACTTACTGTGTGCAGGAAGTCTCGT
GAGAATATACTTAGAAAATCACACTTATCTGGAAATTCAATAAGTCATATTAAAAATATACAATTTCTTGAACTCAGGACTAGCCTGAAA
ATCCAAAATGCATGTAGAGTTGACATGTTGACATATGTCTATGTCCTCTGTTTTTATTTAAGCCTCATTTATTTCTCCCTTGCCATGCCC
ATTTGGGATTTTCTTTGCCCAGCATATGTGCCATAAACAGAACAAATGGATCCAGGGTATACCTCTAATAACCTTTATCTAAATAGAATA
CATTTAACCTGTCAATTATATGTATAGATTTATCCTAATTGGTTCAACATATATATGAATGCTTGTAATAGTCTGTTACTATTTGATAAT
GCATAAATGTTATATTTATATACAGTTACAGCAGGCCAGAAACATACATACACTGCATCCTGTAAGGTCTGTAAATCAGGGCTTCGGCAA
TGCCATTTTGCTATAGACTCATTCATGTTTTTTAGGAATCAGAATCATTTCAGGAGAAAACCAACTAAGTAGACTTTAATTCTTCTCTTT
CTCATTCTTGCCCTTTGAGAAACCCAAGTGGAATCATCACTTAATTACTTACTCAAATTCAATGAATCAAATCCAATCCAATCAGTGAGA
AGAATAGCTTATCTTTCAAGGTAATACTTTACCTTAGATCTTTGAGGGCATGCTTCCCATACAAAGAGCATCAGAAAATCAGGGCAATCA
TCTAGATCTCACAGATCTTCAACATAGGACTCTAGGTTATGAGAGCTGAACCACATAGCTATCAGTTTCAGTTTTTACTTCCTATTGAGT
GTGTAGAAACACAGCCTATGGTTTTGCTGTCTGCGGAAGTTACCATACCCTGTAAAAGACAAATATTTCTTTCTCCTCTCGAACCACTAG
TCAGCCTGGATATTCATGAAAGCTGAAAGAAGGGGTGCCAAAATGCCTAGCTCCTGGATTTAGACTCATGGAATATGAGAAAGGCTTAGG
GAAAATTCAAGTCATGGGGAGATTCCTGCTAGGTGATGCCAGGAATCTCAATGACCTGTTGATTAGAGGGTCTCTGGTCATTTCCACTTG
TGTGTGGAGAAATACATCATTTGCATATGTATCTAGTCAAGAAGCCCTTTTGGAGCAAAGTGGTTGGGAAACTCATTTACTGGGTCCACC
AAAGGAAACCCAATTCTGCCATGTTTTTGCAAATACTACACGTCCCTTTGCTCTCAATAGCAAAAGTGATGTTATAGTTTTTTTTACTTT
TGTCAGAATCAAGGCTTCGGCCACCTGTGCAATATTTTCCCATGGAATGCAGCAGTAAATCCAAGTAGGTATATCCGTGCTCAGAGAGAA
TTCTCCATAGTTCTGACTCCTGAAAAACAAGTCTCATTAGCTCTCATCTAGTTTGATGACTAAAAGTGCACAGCAGTTATACCCCAGTGG
AAGTGATTTTTCTCACCTAGCTGCTCTCTAACTCTTACGGCTATCTAGTTGTCTGAGCTGCTGGTTTGTTTTACTTATTCTCCAACTGAA
CTCATTCCAAACCAAGAAAAAGGACCAAATGAAATTTTCAGTTATTATCATACTTGCTCCTTGAATAAGAATGCTAGAGTCTGGAGGCAG
AAGAAGACTAAGTTAAAAAAAAAACAGCCTGAAGGAATTCTGGAGTGAGTTTTGTAAGTCTAATTGTCAAAGAAGATAAATGGTCTCAGT
ATCTGTAGTAATTTCTGGTTAAGCCTAGAGGGATCACTGAGTGCCAATCCAAGCAGGTGGCACTAGAGGCAGATTGTTCTCCTAGCATAG
AGTGAGTTTCCAGCTGCTCATGACACATTTTCTTATGATTTTCCCTAAAAGAAAACCAAATTTTCTACTCCACCTCTTCCTTTCCTATCA
TTCCACTTATTGTTGCTGCTTTGCTAACAGCCAGCTTAGTAAGCCATCACACAAGTTAGTGTGAGGCTTGGTTTTAAAATAGATAACAGA
GAATCTTGATTAAATAGTATCCAACTTTGTAGCATAACACAGCTAATTCAGGCAATGACATAGAGATGATAAGAAACAACATGGTTTGGT
AGAGGGAACATTTGATTTAGACTCTGCCCATTTTTAGCTGTATGACTTACATAAGTCATTTTGTGTCCAAGCCTCATTTTCTCCCATATG
AAAAGTGAAGGGGTTGGATTAAATGACTAAAATCCCCTTCCAGCCCTATGAGCCCAATGTATTATGATCTCTGCTTTGTTTCCTTCTTAA
GAGGCTTCCTACTATAAAATGTGACCTATTTACATTTTAAGTTGAAGTAGCCCACAATAATGAATAATCAATTTAGATTTTTCTCATCTC
CTTTGGGAGAAATTAAATTCAAGCCTCTATTCATTTGATGTTTTACAACAAGCTTCAAAGTTGGCCATGTTCATTCACAGTTTGATATTT
TGAGACACCAATAAAAGTTTTTTAATAAAAGTTCCCTTGACTTAAACTCACCTTCCTAATAGAAGTAGTGATTTGGCTCACGGAAAAATG
TTTCCAGAGTCAACATGAGAGGACTGGATGAACCTACAGCCTCACTCAAGCTGTTGCATCATTGCTGCTGTAGCAACAGAGCCCTCTCTG
AATACCCAAAACACACAATTTTCTCCAACAATTCTAATTGCCCACCCAGTATGGGAATTTGAGAGCCTTTGGTGAATAACCTTGATCACT
CTTTTGAAATTTGGTACAACACTTGCACAATCACGGCAACTGTTTGTAAATATCTTTTCTTCTCCGCCAGTATGTAGACATGCACACCCA
TTCACAAGTAAGCCCGCAAATTCATTTTCACATTTTCCTCTTGGTTTGTTTTTATCATGGGTATCACATTGCAGGAAGAGATGCTCTAAC
TTACAAGAATGGAATTTTCTGACTATCATTGCCCTCTTCAAGGCCTGATTAGTTTGTAGGGTGGATGGGATACAATGCATGGTCTACAAG
GTCCATGTCACCAGCCATGATCTTTAAACAACCTCTTGCACTTTCTGGCACTGCTGCAATGGCCCATGGTGGACACCTCTGCTGTTTGTC
CAAACTTCTGCTAAATAGAGTAGTGTTGGTATTTGTTGTGTTGTGAACTCCTTTGTTGTCAGAGAAGACTTCAGCTCTTCAGGTTTGCAA
GGGCAAGATGTAAAGCTAGGACTGAAAGGATTGGGTTTTGTTTTTCGGCCGGCTTTTTTCCATTAGTGCAAAAAACCTGATGCAAGGGCA
GCAAGATAAACACAATTTCTTCATTGACCCAGATAAGAACCTGTAGAAAAGTGAGAGATGCCCCTAAGTTCCTATTTCATTTATCCTAAA
TAATATCCTGAATAACTACTGATCAGTTTTTTTCTATGTCCAGCCTTGCTTCACTTTCCAACCTCCAGGCCAAATATTCATTTTGATATT
TTACAAAATCCTTCTGGTTTTTACACAGGGCCCTTTTGTGCTGAGAATAAAACCAGCTATTGGAACAGACCTCACTGCTTTGTAGAGTCA
GAAGTTGACCTAGAGAATGGGTAGCAACAGGTCCTCAGTTTCTCTGGAGACACCCCCAATCCTTGGGTGAGTGTTGAAACCTGACAACTG
ACTGTTAGCCTTGTCATCATCCTCACTGGAGATGGAGATGTTGCAGTCGGAGCCTCACTCCTTCTGGGGCACTGTTTCTTCTCATGGCAA
CCATTTTGCCTGCCTGGAAACAGCCTGTTGCCTTTGCTAGGGGGCAAATACACACACTAGCCAAGGAAGTTGGTCCAGCACATCTCTGAG
GTTTCTCCCCCATGGACCCATGGAGCGAATTCCCTGAGATAAATGATCAGAAAGTTGGCTGTCTGGTGGTTTAATACTCCATAAGAGTTA
CTTCCCTTATAGAAAGTCATCCTTTGGCATCTAGATTTTTCTACAAATCACCTTAACTCCCTCCCTTTCTCTTTCTCCTGGAAAACCTCA
GCATTGCATCTCCATGTTGCACAACACAGATCAGATTATCTGGTCACTATAGAGATTTGTATATAAAAAAACTACTTTTTTGAGGATTTT
GTATATTGTTTTTCTATTTGTTTTCTACAGCTTGAGGAAAGAGCTGGCAAACTGTGAATCTAACTTGATCTTGTTGCCAGCAGATATATT
TTGGCTTCCTGGTAAGAGTCTGTGTTACCAGGGACAATATATTGCCCTCTGATCAGTATTGCACCCTAAATCCACAAATTCCTCCAGCCC
AGTCTTACATTTTTTTAAACAAATCCCCTAGCTTGTTTGCTATTATTTATAAAGAGCATTAGAAAATGTATTTATAGACCTGGATGTTAT
ATGTTTAATATTAATTTAGCCTTTAATAATGTTATAGGTTTGTAACTATTCTTCAGAAATTATAAAGAACTCAGTGTAGACTGAATTAAT
CTATTTAGTATCTGTAATTTTGCAGACATATTTTCTTACAGTATTTTCTATGTAACCACACATGTAGAATTATAACTAATTAGAGCACAA
GAAGTTTCTTCAGCAATTTAGAGCTACCAATTGTTTCTTGACTATATAGTCACATTTGACAAATTTAAGAACCCAGTCTTTAGTGATGCA
ATAAACAAAATGAACCATTAAGAACAAGGAATTGCTTAAATCCCTTAGCTGGTGAGGATATACATCTAAATAATTCATCTTTCTAACTCA
AGGAATGGTGCTGATTTTTTAAATGTTTGACACCAGGCCTTGTTTTTCCAGCTGAGCATTCTCATTTTGCTTTTCTCTAAGACTATCAAA
GACAAGGTATTAATAGTAGGATTATTCCTAGATCAGAATGTTTCATACATTCCTAAAGGTTTATGTGGAAATTGGCTTAGGAAAACTTTG
AGTAGCAGAGACTGAGGATGAGTGCTAGAGATGAAATCAGGACAGATTTGTTGCAGTTAATTCTTGCCAAGCAAATTAGTGGTAAATGTC
ACATTGTTATGTGAATTGAGCACATATTTTTAAAGAAAGTTTACAAAAAATTTTTAGAACCAACTATGAGGCAATACTGTATCACTGGGG
GCTGGGAGTGGGGGCTTAGAATCATACTGAAATTGTTTAAAAGCAGCCCAGGTAGTTTCTGTCCTCAGGTGAATAACAGACTATATAACT
TCCCCGAAAGGTAAAACGATAGCCACTGCAGAGACGAGGTGTCTTCCTTCCACCAAATACTTTCTGAGATGGTGGTAGGAGTAGTATTTT
TACCGTGGTTTAAAAAGTAGTCAGTTACATAGAAAGTGTATTGGTATGTATTTGAACCTGCTCTTCATTAAACAAACAGATTAGATGTAC
CCTCGACTGGCAATAATTGTATCTATTTTCAAGTACAGCTAGCTGTCAAAGCATGAAGCTCTTGTGTATACACACTGACACTTGGTTCAC
GCATGAAGAACAGTGCCTATGCACTTTGTGTAGCTATAATGTAGGTATCTAGGTGTAATTTCAGTGAAATGGTGTATAGATGTATTGTAA
TTTAAATGTATATGTTATTTTTGGCTATTCATCTAAATGCAGTAGACATGTTGATCGGTGTTTTGCAAACATTTCTTTTTCCTTCTTAGA
TAACTAGTCGTGAATCATTTCTCCTCTTTCTCAGTGTGGCTTGGGAATATATATGAGTGAAGAATTTATCTGTGAATCCTTTGTACTGAT
GATTGTTTGAAAGTCTGTGTGTGTCCAGCACCTTTGTAAATACACAATTCAGAGCAGGGATGGGCTGGGTGTGTGTCCTGGTTCTTAGTG
AAAGGTCATCTCATGTCTGTTTAATACATGGTGAATGCAACTGTGGAACTTTTGATTACCTAGACTTAGGTAGGTTTAGAATGAGAACAT
CCATCTACAGTCCTCCTTTGCTTGGTGGATTGGGCTCAGAGGAACAAAAAGTTAGTCTGACTCTGTGCATATTAGCATCATGTCTTTAGA
GAAAGGTCAGCCTCTCTGGTTGCCAAATACTCATCATGATGCTCATGACTTAAAGGTTCTGAGGAGCCTTGTCTCCCTTGGATTTTTGAG
TCAGGGTACAGGAAAAAACATTGCTGACTAACTAACTGCAAATGCATCTGCAGGTGAAACCCTACGAAAGCACAGTTCTGGCTATAAACT
TCAGAGTTCTCTGTAAAAAACTTAGAGCACTAGAAGCACAGGAATAGTGAGTGTACAGCTTATGCGGTTGTAGAGGGGCAACTGATGAAC
ACAGGTCCCACATATATGAGGGAGTATGACGTTCTCTACCTAATATGTTCTGTGTGCATGTTTTGAATGATTGAAGATGGGATTAACTAA
TGCAAGTTTACAGTTGCCTCCTAAAACACACATTCTGTATAATTATCGCTAAATACAATGCTGTGAGGTCTATAGTTCCTGTAACCCCTT
TCTCCTCCCCAAGGACAGAGAAGAACTAGCCATGTGCTATAGGGAACCCTGAGTGCCCTACTCTTTTCCCAAGAAGGGTAAAGCCTACAA
TATCATCAGGGGGCATGAAGCACATTAATTTGCAGTGGCTGCTTCATATGAGGAGATATGGTGGACAGGCTAATTTTTCCTTGAAAATGT
GGCTTCTTCAACTCCTTTCAAATTTAGGATGGAATACTTCCTGAAATAAAACTGGGCTTTATGCAGGATTCTCTTTGAAAATTCTTGTAT
GTCCAGAACAAAAGATAAAACTAATTGTATTCCTCACATTCACAATCCCCATTGGTCTGAAGTCACGTAGCACAGAGCATCTATAGCACA
TAGTGTTTAAAGACTAATGAATGCAAAAAGATAAAATCTTCAACTAATTTTTGAATTGTTTCTCATATATGCTACTAGAAAATGCCTTGT
TGATGAAGCACATTTTGGGTAGTTGAGGTCTTTTGTTTTCGCCTTTAGCTTTCTAAGCTTTCTTACAATGTGGACTGATTACTGTAACAT
TTCACGTGTAAAATAACTGGATATTCTTTATATACTGGAAATAACCTGTGAATCCAATATTTCACTAAGTGTTTTAACTTTTGTGTATAT

>In-frame_ENST00000378878_ENST00000278379_TCGA-HT-7854-01A_PAMR1_chr11_35461175_-_SLC1A2_chr11_35339063_length(amino acids)=824AA_start in transcript=18_stop in transcript=2492
MELGCWTQLGLTFLQLLLISSLPREYTVINEACPGAEWNIMCRECCEYDQIECVCPGKREVVGYTIPCCRNEENECDSCLIHPGCTIFEN
CKSCRNGSWGGTLDDFYVKGFYCAECRAGWYGGDCMPCSSSPCFHDGTCVLDKAGSYKCACLAGYTGQRCENLLEERNCSDPGGPVNGYQ
KITGGPGLINGRHAKIGTVVSFFCNNSYVLSGNEKRTCQQNGEWSGKQPICIKACREPKISDLVRRRVLPMQVQSSANNMPKQVEVRMHD
SHLGSEEPKHRHLGLRLCDKLGKNLLLTLTVFGVILGAVCGGLLRLASPIHPDVVMLIAFPGDILMRMLKMLILPLIISSLITGLSGLDA
KASGRLGTRAMVYYMSTTIIAAVLGVILVLAIHPGNPKLKKQLGPGKKNDEVSSLDAFLDLIRNLFPENLVQACFQQIQTVTKKVLVAPP
PDEEANATSAVVSLLNETVTEVPEETKMVIKKGLEFKDGMNVLGLIGFFIAFGIAMGKMGDQAKLMVDFFNILNEIVMKLVIMIMWYSPL
GIACLICGKIIAIKDLEVVARQLGMYMVTVIIGLIIHGGIFLPLIYFVVTRKNPFSFFAGIFQAWITALGTASSAGTLPVTFRCLEENLG
IDKRVTRFVLPVGATINMDGTALYEAVAAIFIAQMNGVVLDGGQIVTVSLTATLASVGAASIPSAGLVTMLLILTAVGLPTEDISLLVAV
DWLLDRMRTSVNVVGDSFGAGIVYHLSKSELDTIDSQHRVHEDIEMTKTQSIYDDMKNHRESNSNQCVYAAHNSVIVDECKVTLAANGKS

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Fusion Gene PPI Analysis for PAMR1-SLC1A2


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page.


check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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Related Drugs for PAMR1-SLC1A2


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.8 2021-05-08)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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Related Diseases for PAMR1-SLC1A2


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource
HgenePAMR1C0023893Liver Cirrhosis, Experimental1CTD_human
HgenePAMR1C2239176Liver carcinoma1CTD_human
TgeneSLC1A2C0005586Bipolar Disorder4PSYGENET
TgeneSLC1A2C0036341Schizophrenia4PSYGENET
TgeneSLC1A2C0001973Alcoholic Intoxication, Chronic3PSYGENET
TgeneSLC1A2C0011570Mental Depression3PSYGENET
TgeneSLC1A2C0011581Depressive disorder3PSYGENET
TgeneSLC1A2C4310717EPILEPTIC ENCEPHALOPATHY, EARLY INFANTILE, 413CTD_human;GENOMICS_ENGLAND;UNIPROT
TgeneSLC1A2C0002736Amyotrophic Lateral Sclerosis1CTD_human
TgeneSLC1A2C0009171Cocaine Abuse1CTD_human
TgeneSLC1A2C0011860Diabetes Mellitus, Non-Insulin-Dependent1CTD_human
TgeneSLC1A2C0014544Epilepsy1CTD_human
TgeneSLC1A2C0024623Malignant neoplasm of stomach1CTD_human
TgeneSLC1A2C0027746Nerve Degeneration1CTD_human
TgeneSLC1A2C0038356Stomach Neoplasms1CTD_human
TgeneSLC1A2C0086237Epilepsy, Cryptogenic1CTD_human
TgeneSLC1A2C0236018Aura1CTD_human
TgeneSLC1A2C0236736Cocaine-Related Disorders1CTD_human
TgeneSLC1A2C0393554Amyotrophic Lateral Sclerosis With Dementia1CTD_human
TgeneSLC1A2C0525045Mood Disorders1PSYGENET
TgeneSLC1A2C0543859Amyotrophic Lateral Sclerosis, Guam Form1CTD_human
TgeneSLC1A2C0543888Epileptic encephalopathy1GENOMICS_ENGLAND
TgeneSLC1A2C0600427Cocaine Dependence1CTD_human
TgeneSLC1A2C0751111Awakening Epilepsy1CTD_human
TgeneSLC1A2C1708349Hereditary Diffuse Gastric Cancer1CTD_human
TgeneSLC1A2C3714756Intellectual Disability1GENOMICS_ENGLAND