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	Fusion Gene Summary
	Fusion Gene ORF analysis
	Fusion Genomic Features
	Fusion Protein Features
	Fusion Gene Sequence
	Fusion Gene PPI analysis
	Related Drugs
	Related Diseases

Fusion gene:PAX3-NCOA1 (FusionGDB2 ID:62545)

Fusion Gene Summary for PAX3-NCOA1

Fusion gene summary

Fusion gene information	Fusion gene name: PAX3-NCOA1
	Fusion gene ID: 62545
		Hgene	Tgene
	Gene symbol	PAX3	NCOA1
	Gene ID	5077	8648
	Gene name	paired box 3	nuclear receptor coactivator 1
	Synonyms	CDHS\|HUP2\|WS1\|WS3	F-SRC-1\|KAT13A\|RIP160\|SRC1\|bHLHe42\|bHLHe74
	Cytomap	2q36.1	2p23.3
	Type of gene	protein-coding	protein-coding
	Description	paired box protein Pax-3paired box homeotic gene 3paired domain gene 3paired domain gene HuP2transcriptional factor PAX3	nuclear receptor coactivator 1Hin-2 proteinclass E basic helix-loop-helix protein 74renal carcinoma antigen NY-REN-52steroid receptor coactivator-1
	Modification date	20200313	20200313
	UniProtAcc	.	Q15788
	Ensembl transtripts involved in fusion gene	ENST00000392069, ENST00000344493, ENST00000350526, ENST00000336840, ENST00000392070, ENST00000409551, ENST00000464706, ENST00000409828, ENST00000258387,	ENST00000406961, ENST00000469850, ENST00000405141, ENST00000407230, ENST00000538539, ENST00000288599, ENST00000348332, ENST00000395856,
Fusion gene scores	* DoF score	7 X 10 X 5=350	11 X 13 X 7=1001
	# samples	8	13
	** MAII score	log2(8/350*10)=-2.12928301694497 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0	log2(13/1001*10)=-2.94485844580754 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0
Context	PubMed: PAX3 [Title/Abstract] AND NCOA1 [Title/Abstract] AND fusion [Title/Abstract]
Most frequent breakpoint	PAX3(223163334)-NCOA1(24949456), # samples:1 PAX3(223085940)-NCOA1(24949456), # samples:1
Anticipated loss of major functional domain due to fusion event.

* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez

Partner	Gene	GO ID	GO term	PubMed ID
Hgene	PAX3	GO:0045893	positive regulation of transcription, DNA-templated	11863357
Hgene	PAX3	GO:0045944	positive regulation of transcription by RNA polymerase II	11863357
Tgene	NCOA1	GO:0000435	positive regulation of transcription from RNA polymerase II promoter by galactose	10207113
Tgene	NCOA1	GO:0006351	transcription, DNA-templated	9223431
Tgene	NCOA1	GO:0045893	positive regulation of transcription, DNA-templated	11891224\|15367689
Tgene	NCOA1	GO:0045944	positive regulation of transcription by RNA polymerase II	15919756

Fusion gene breakpoints across PAX3 (5'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.

Fusion gene breakpoints across NCOA1 (3'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.

Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0)
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.

Source	Disease	Sample	Hgene	Hchr	Hbp	Hstrand	Tgene	Tchr	Tbp	Tstrand
ChimerDB4	rhabdomyosarcoma	AY633656	PAX3	chr2	223163334		NCOA1	chr2	24949456
ChiTaRS5.0	N/A	AY633656	PAX3	chr2	223085940	-	NCOA1	chr2	24949456	+

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Fusion Gene ORF analysis for PAX3-NCOA1

Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.

ORF	Henst	Tenst	Hgene	Hchr	Hbp	Hstrand	Tgene	Tchr	Tbp	Tstrand
intron-3CDS	ENST00000392069	ENST00000406961	PAX3	chr2	223163334		NCOA1	chr2	24949456
intron-intron	ENST00000392069	ENST00000469850	PAX3	chr2	223163334		NCOA1	chr2	24949456
intron-intron	ENST00000392069	ENST00000405141	PAX3	chr2	223163334		NCOA1	chr2	24949456
intron-intron	ENST00000392069	ENST00000407230	PAX3	chr2	223163334		NCOA1	chr2	24949456
intron-intron	ENST00000392069	ENST00000538539	PAX3	chr2	223163334		NCOA1	chr2	24949456
intron-intron	ENST00000392069	ENST00000288599	PAX3	chr2	223163334		NCOA1	chr2	24949456
intron-intron	ENST00000392069	ENST00000348332	PAX3	chr2	223163334		NCOA1	chr2	24949456
intron-intron	ENST00000392069	ENST00000395856	PAX3	chr2	223163334		NCOA1	chr2	24949456
intron-3CDS	ENST00000344493	ENST00000406961	PAX3	chr2	223163334		NCOA1	chr2	24949456
intron-intron	ENST00000344493	ENST00000469850	PAX3	chr2	223163334		NCOA1	chr2	24949456
intron-intron	ENST00000344493	ENST00000405141	PAX3	chr2	223163334		NCOA1	chr2	24949456
intron-intron	ENST00000344493	ENST00000407230	PAX3	chr2	223163334		NCOA1	chr2	24949456
intron-intron	ENST00000344493	ENST00000538539	PAX3	chr2	223163334		NCOA1	chr2	24949456
intron-intron	ENST00000344493	ENST00000288599	PAX3	chr2	223163334		NCOA1	chr2	24949456
intron-intron	ENST00000344493	ENST00000348332	PAX3	chr2	223163334		NCOA1	chr2	24949456
intron-intron	ENST00000344493	ENST00000395856	PAX3	chr2	223163334		NCOA1	chr2	24949456
intron-3CDS	ENST00000350526	ENST00000406961	PAX3	chr2	223163334		NCOA1	chr2	24949456
intron-intron	ENST00000350526	ENST00000469850	PAX3	chr2	223163334		NCOA1	chr2	24949456
intron-intron	ENST00000350526	ENST00000405141	PAX3	chr2	223163334		NCOA1	chr2	24949456
intron-intron	ENST00000350526	ENST00000407230	PAX3	chr2	223163334		NCOA1	chr2	24949456
intron-intron	ENST00000350526	ENST00000538539	PAX3	chr2	223163334		NCOA1	chr2	24949456
intron-intron	ENST00000350526	ENST00000288599	PAX3	chr2	223163334		NCOA1	chr2	24949456
intron-intron	ENST00000350526	ENST00000348332	PAX3	chr2	223163334		NCOA1	chr2	24949456
intron-intron	ENST00000350526	ENST00000395856	PAX3	chr2	223163334		NCOA1	chr2	24949456
intron-3CDS	ENST00000336840	ENST00000406961	PAX3	chr2	223163334		NCOA1	chr2	24949456
intron-intron	ENST00000336840	ENST00000469850	PAX3	chr2	223163334		NCOA1	chr2	24949456
intron-intron	ENST00000336840	ENST00000405141	PAX3	chr2	223163334		NCOA1	chr2	24949456
intron-intron	ENST00000336840	ENST00000407230	PAX3	chr2	223163334		NCOA1	chr2	24949456
intron-intron	ENST00000336840	ENST00000538539	PAX3	chr2	223163334		NCOA1	chr2	24949456
intron-intron	ENST00000336840	ENST00000288599	PAX3	chr2	223163334		NCOA1	chr2	24949456
intron-intron	ENST00000336840	ENST00000348332	PAX3	chr2	223163334		NCOA1	chr2	24949456
intron-intron	ENST00000336840	ENST00000395856	PAX3	chr2	223163334		NCOA1	chr2	24949456
intron-3CDS	ENST00000392070	ENST00000406961	PAX3	chr2	223163334		NCOA1	chr2	24949456
intron-intron	ENST00000392070	ENST00000469850	PAX3	chr2	223163334		NCOA1	chr2	24949456
intron-intron	ENST00000392070	ENST00000405141	PAX3	chr2	223163334		NCOA1	chr2	24949456
intron-intron	ENST00000392070	ENST00000407230	PAX3	chr2	223163334		NCOA1	chr2	24949456
intron-intron	ENST00000392070	ENST00000538539	PAX3	chr2	223163334		NCOA1	chr2	24949456
intron-intron	ENST00000392070	ENST00000288599	PAX3	chr2	223163334		NCOA1	chr2	24949456
intron-intron	ENST00000392070	ENST00000348332	PAX3	chr2	223163334		NCOA1	chr2	24949456
intron-intron	ENST00000392070	ENST00000395856	PAX3	chr2	223163334		NCOA1	chr2	24949456
intron-3CDS	ENST00000409551	ENST00000406961	PAX3	chr2	223163334		NCOA1	chr2	24949456
intron-intron	ENST00000409551	ENST00000469850	PAX3	chr2	223163334		NCOA1	chr2	24949456
intron-intron	ENST00000409551	ENST00000405141	PAX3	chr2	223163334		NCOA1	chr2	24949456
intron-intron	ENST00000409551	ENST00000407230	PAX3	chr2	223163334		NCOA1	chr2	24949456
intron-intron	ENST00000409551	ENST00000538539	PAX3	chr2	223163334		NCOA1	chr2	24949456
intron-intron	ENST00000409551	ENST00000288599	PAX3	chr2	223163334		NCOA1	chr2	24949456
intron-intron	ENST00000409551	ENST00000348332	PAX3	chr2	223163334		NCOA1	chr2	24949456
intron-intron	ENST00000409551	ENST00000395856	PAX3	chr2	223163334		NCOA1	chr2	24949456
intron-3CDS	ENST00000464706	ENST00000406961	PAX3	chr2	223163334		NCOA1	chr2	24949456
intron-intron	ENST00000464706	ENST00000469850	PAX3	chr2	223163334		NCOA1	chr2	24949456
intron-intron	ENST00000464706	ENST00000405141	PAX3	chr2	223163334		NCOA1	chr2	24949456
intron-intron	ENST00000464706	ENST00000407230	PAX3	chr2	223163334		NCOA1	chr2	24949456
intron-intron	ENST00000464706	ENST00000538539	PAX3	chr2	223163334		NCOA1	chr2	24949456
intron-intron	ENST00000464706	ENST00000288599	PAX3	chr2	223163334		NCOA1	chr2	24949456
intron-intron	ENST00000464706	ENST00000348332	PAX3	chr2	223163334		NCOA1	chr2	24949456
intron-intron	ENST00000464706	ENST00000395856	PAX3	chr2	223163334		NCOA1	chr2	24949456
intron-3CDS	ENST00000409828	ENST00000406961	PAX3	chr2	223163334		NCOA1	chr2	24949456
intron-intron	ENST00000409828	ENST00000469850	PAX3	chr2	223163334		NCOA1	chr2	24949456
intron-intron	ENST00000409828	ENST00000405141	PAX3	chr2	223163334		NCOA1	chr2	24949456
intron-intron	ENST00000409828	ENST00000407230	PAX3	chr2	223163334		NCOA1	chr2	24949456
intron-intron	ENST00000409828	ENST00000538539	PAX3	chr2	223163334		NCOA1	chr2	24949456
intron-intron	ENST00000409828	ENST00000288599	PAX3	chr2	223163334		NCOA1	chr2	24949456
intron-intron	ENST00000409828	ENST00000348332	PAX3	chr2	223163334		NCOA1	chr2	24949456
intron-intron	ENST00000409828	ENST00000395856	PAX3	chr2	223163334		NCOA1	chr2	24949456
intron-3CDS	ENST00000258387	ENST00000406961	PAX3	chr2	223163334		NCOA1	chr2	24949456
intron-intron	ENST00000258387	ENST00000469850	PAX3	chr2	223163334		NCOA1	chr2	24949456
intron-intron	ENST00000258387	ENST00000405141	PAX3	chr2	223163334		NCOA1	chr2	24949456
intron-intron	ENST00000258387	ENST00000407230	PAX3	chr2	223163334		NCOA1	chr2	24949456
intron-intron	ENST00000258387	ENST00000538539	PAX3	chr2	223163334		NCOA1	chr2	24949456
intron-intron	ENST00000258387	ENST00000288599	PAX3	chr2	223163334		NCOA1	chr2	24949456
intron-intron	ENST00000258387	ENST00000348332	PAX3	chr2	223163334		NCOA1	chr2	24949456
intron-intron	ENST00000258387	ENST00000395856	PAX3	chr2	223163334		NCOA1	chr2	24949456
In-frame	ENST00000392069	ENST00000406961	PAX3	chr2	223085940	-	NCOA1	chr2	24949456	+
5CDS-intron	ENST00000392069	ENST00000469850	PAX3	chr2	223085940	-	NCOA1	chr2	24949456	+
5CDS-intron	ENST00000392069	ENST00000405141	PAX3	chr2	223085940	-	NCOA1	chr2	24949456	+
5CDS-intron	ENST00000392069	ENST00000407230	PAX3	chr2	223085940	-	NCOA1	chr2	24949456	+
5CDS-intron	ENST00000392069	ENST00000538539	PAX3	chr2	223085940	-	NCOA1	chr2	24949456	+
5CDS-intron	ENST00000392069	ENST00000288599	PAX3	chr2	223085940	-	NCOA1	chr2	24949456	+
5CDS-intron	ENST00000392069	ENST00000348332	PAX3	chr2	223085940	-	NCOA1	chr2	24949456	+
5CDS-intron	ENST00000392069	ENST00000395856	PAX3	chr2	223085940	-	NCOA1	chr2	24949456	+
In-frame	ENST00000344493	ENST00000406961	PAX3	chr2	223085940	-	NCOA1	chr2	24949456	+
5CDS-intron	ENST00000344493	ENST00000469850	PAX3	chr2	223085940	-	NCOA1	chr2	24949456	+
5CDS-intron	ENST00000344493	ENST00000405141	PAX3	chr2	223085940	-	NCOA1	chr2	24949456	+
5CDS-intron	ENST00000344493	ENST00000407230	PAX3	chr2	223085940	-	NCOA1	chr2	24949456	+
5CDS-intron	ENST00000344493	ENST00000538539	PAX3	chr2	223085940	-	NCOA1	chr2	24949456	+
5CDS-intron	ENST00000344493	ENST00000288599	PAX3	chr2	223085940	-	NCOA1	chr2	24949456	+
5CDS-intron	ENST00000344493	ENST00000348332	PAX3	chr2	223085940	-	NCOA1	chr2	24949456	+
5CDS-intron	ENST00000344493	ENST00000395856	PAX3	chr2	223085940	-	NCOA1	chr2	24949456	+
In-frame	ENST00000350526	ENST00000406961	PAX3	chr2	223085940	-	NCOA1	chr2	24949456	+
5CDS-intron	ENST00000350526	ENST00000469850	PAX3	chr2	223085940	-	NCOA1	chr2	24949456	+
5CDS-intron	ENST00000350526	ENST00000405141	PAX3	chr2	223085940	-	NCOA1	chr2	24949456	+
5CDS-intron	ENST00000350526	ENST00000407230	PAX3	chr2	223085940	-	NCOA1	chr2	24949456	+
5CDS-intron	ENST00000350526	ENST00000538539	PAX3	chr2	223085940	-	NCOA1	chr2	24949456	+
5CDS-intron	ENST00000350526	ENST00000288599	PAX3	chr2	223085940	-	NCOA1	chr2	24949456	+
5CDS-intron	ENST00000350526	ENST00000348332	PAX3	chr2	223085940	-	NCOA1	chr2	24949456	+
5CDS-intron	ENST00000350526	ENST00000395856	PAX3	chr2	223085940	-	NCOA1	chr2	24949456	+
In-frame	ENST00000336840	ENST00000406961	PAX3	chr2	223085940	-	NCOA1	chr2	24949456	+
5CDS-intron	ENST00000336840	ENST00000469850	PAX3	chr2	223085940	-	NCOA1	chr2	24949456	+
5CDS-intron	ENST00000336840	ENST00000405141	PAX3	chr2	223085940	-	NCOA1	chr2	24949456	+
5CDS-intron	ENST00000336840	ENST00000407230	PAX3	chr2	223085940	-	NCOA1	chr2	24949456	+
5CDS-intron	ENST00000336840	ENST00000538539	PAX3	chr2	223085940	-	NCOA1	chr2	24949456	+
5CDS-intron	ENST00000336840	ENST00000288599	PAX3	chr2	223085940	-	NCOA1	chr2	24949456	+
5CDS-intron	ENST00000336840	ENST00000348332	PAX3	chr2	223085940	-	NCOA1	chr2	24949456	+
5CDS-intron	ENST00000336840	ENST00000395856	PAX3	chr2	223085940	-	NCOA1	chr2	24949456	+
In-frame	ENST00000392070	ENST00000406961	PAX3	chr2	223085940	-	NCOA1	chr2	24949456	+
5CDS-intron	ENST00000392070	ENST00000469850	PAX3	chr2	223085940	-	NCOA1	chr2	24949456	+
5CDS-intron	ENST00000392070	ENST00000405141	PAX3	chr2	223085940	-	NCOA1	chr2	24949456	+
5CDS-intron	ENST00000392070	ENST00000407230	PAX3	chr2	223085940	-	NCOA1	chr2	24949456	+
5CDS-intron	ENST00000392070	ENST00000538539	PAX3	chr2	223085940	-	NCOA1	chr2	24949456	+
5CDS-intron	ENST00000392070	ENST00000288599	PAX3	chr2	223085940	-	NCOA1	chr2	24949456	+
5CDS-intron	ENST00000392070	ENST00000348332	PAX3	chr2	223085940	-	NCOA1	chr2	24949456	+
5CDS-intron	ENST00000392070	ENST00000395856	PAX3	chr2	223085940	-	NCOA1	chr2	24949456	+
In-frame	ENST00000409551	ENST00000406961	PAX3	chr2	223085940	-	NCOA1	chr2	24949456	+
5CDS-intron	ENST00000409551	ENST00000469850	PAX3	chr2	223085940	-	NCOA1	chr2	24949456	+
5CDS-intron	ENST00000409551	ENST00000405141	PAX3	chr2	223085940	-	NCOA1	chr2	24949456	+
5CDS-intron	ENST00000409551	ENST00000407230	PAX3	chr2	223085940	-	NCOA1	chr2	24949456	+
5CDS-intron	ENST00000409551	ENST00000538539	PAX3	chr2	223085940	-	NCOA1	chr2	24949456	+
5CDS-intron	ENST00000409551	ENST00000288599	PAX3	chr2	223085940	-	NCOA1	chr2	24949456	+
5CDS-intron	ENST00000409551	ENST00000348332	PAX3	chr2	223085940	-	NCOA1	chr2	24949456	+
5CDS-intron	ENST00000409551	ENST00000395856	PAX3	chr2	223085940	-	NCOA1	chr2	24949456	+
5UTR-3CDS	ENST00000464706	ENST00000406961	PAX3	chr2	223085940	-	NCOA1	chr2	24949456	+
5UTR-intron	ENST00000464706	ENST00000469850	PAX3	chr2	223085940	-	NCOA1	chr2	24949456	+
5UTR-intron	ENST00000464706	ENST00000405141	PAX3	chr2	223085940	-	NCOA1	chr2	24949456	+
5UTR-intron	ENST00000464706	ENST00000407230	PAX3	chr2	223085940	-	NCOA1	chr2	24949456	+
5UTR-intron	ENST00000464706	ENST00000538539	PAX3	chr2	223085940	-	NCOA1	chr2	24949456	+
5UTR-intron	ENST00000464706	ENST00000288599	PAX3	chr2	223085940	-	NCOA1	chr2	24949456	+
5UTR-intron	ENST00000464706	ENST00000348332	PAX3	chr2	223085940	-	NCOA1	chr2	24949456	+
5UTR-intron	ENST00000464706	ENST00000395856	PAX3	chr2	223085940	-	NCOA1	chr2	24949456	+
intron-3CDS	ENST00000409828	ENST00000406961	PAX3	chr2	223085940	-	NCOA1	chr2	24949456	+
intron-intron	ENST00000409828	ENST00000469850	PAX3	chr2	223085940	-	NCOA1	chr2	24949456	+
intron-intron	ENST00000409828	ENST00000405141	PAX3	chr2	223085940	-	NCOA1	chr2	24949456	+
intron-intron	ENST00000409828	ENST00000407230	PAX3	chr2	223085940	-	NCOA1	chr2	24949456	+
intron-intron	ENST00000409828	ENST00000538539	PAX3	chr2	223085940	-	NCOA1	chr2	24949456	+
intron-intron	ENST00000409828	ENST00000288599	PAX3	chr2	223085940	-	NCOA1	chr2	24949456	+
intron-intron	ENST00000409828	ENST00000348332	PAX3	chr2	223085940	-	NCOA1	chr2	24949456	+
intron-intron	ENST00000409828	ENST00000395856	PAX3	chr2	223085940	-	NCOA1	chr2	24949456	+
intron-3CDS	ENST00000258387	ENST00000406961	PAX3	chr2	223085940	-	NCOA1	chr2	24949456	+
intron-intron	ENST00000258387	ENST00000469850	PAX3	chr2	223085940	-	NCOA1	chr2	24949456	+
intron-intron	ENST00000258387	ENST00000405141	PAX3	chr2	223085940	-	NCOA1	chr2	24949456	+
intron-intron	ENST00000258387	ENST00000407230	PAX3	chr2	223085940	-	NCOA1	chr2	24949456	+
intron-intron	ENST00000258387	ENST00000538539	PAX3	chr2	223085940	-	NCOA1	chr2	24949456	+
intron-intron	ENST00000258387	ENST00000288599	PAX3	chr2	223085940	-	NCOA1	chr2	24949456	+
intron-intron	ENST00000258387	ENST00000348332	PAX3	chr2	223085940	-	NCOA1	chr2	24949456	+
intron-intron	ENST00000258387	ENST00000395856	PAX3	chr2	223085940	-	NCOA1	chr2	24949456	+
5CDS-intron	ENST00000336840	ENST00000288599	PAX3	chr2	223085940	-	NCOA1	chr2	24949457	+
5CDS-intron	ENST00000336840	ENST00000348332	PAX3	chr2	223085940	-	NCOA1	chr2	24949457	+
5CDS-intron	ENST00000336840	ENST00000395856	PAX3	chr2	223085940	-	NCOA1	chr2	24949457	+
5CDS-intron	ENST00000336840	ENST00000405141	PAX3	chr2	223085940	-	NCOA1	chr2	24949457	+
5CDS-intron	ENST00000336840	ENST00000407230	PAX3	chr2	223085940	-	NCOA1	chr2	24949457	+
5CDS-intron	ENST00000336840	ENST00000469850	PAX3	chr2	223085940	-	NCOA1	chr2	24949457	+
5CDS-intron	ENST00000336840	ENST00000538539	PAX3	chr2	223085940	-	NCOA1	chr2	24949457	+
5CDS-intron	ENST00000344493	ENST00000288599	PAX3	chr2	223085940	-	NCOA1	chr2	24949457	+
5CDS-intron	ENST00000344493	ENST00000348332	PAX3	chr2	223085940	-	NCOA1	chr2	24949457	+
5CDS-intron	ENST00000344493	ENST00000395856	PAX3	chr2	223085940	-	NCOA1	chr2	24949457	+
5CDS-intron	ENST00000344493	ENST00000405141	PAX3	chr2	223085940	-	NCOA1	chr2	24949457	+
5CDS-intron	ENST00000344493	ENST00000407230	PAX3	chr2	223085940	-	NCOA1	chr2	24949457	+
5CDS-intron	ENST00000344493	ENST00000469850	PAX3	chr2	223085940	-	NCOA1	chr2	24949457	+
5CDS-intron	ENST00000344493	ENST00000538539	PAX3	chr2	223085940	-	NCOA1	chr2	24949457	+
5CDS-intron	ENST00000350526	ENST00000288599	PAX3	chr2	223085940	-	NCOA1	chr2	24949457	+
5CDS-intron	ENST00000350526	ENST00000348332	PAX3	chr2	223085940	-	NCOA1	chr2	24949457	+
5CDS-intron	ENST00000350526	ENST00000395856	PAX3	chr2	223085940	-	NCOA1	chr2	24949457	+
5CDS-intron	ENST00000350526	ENST00000405141	PAX3	chr2	223085940	-	NCOA1	chr2	24949457	+
5CDS-intron	ENST00000350526	ENST00000407230	PAX3	chr2	223085940	-	NCOA1	chr2	24949457	+
5CDS-intron	ENST00000350526	ENST00000469850	PAX3	chr2	223085940	-	NCOA1	chr2	24949457	+
5CDS-intron	ENST00000350526	ENST00000538539	PAX3	chr2	223085940	-	NCOA1	chr2	24949457	+
5CDS-intron	ENST00000392069	ENST00000288599	PAX3	chr2	223085940	-	NCOA1	chr2	24949457	+
5CDS-intron	ENST00000392069	ENST00000348332	PAX3	chr2	223085940	-	NCOA1	chr2	24949457	+
5CDS-intron	ENST00000392069	ENST00000395856	PAX3	chr2	223085940	-	NCOA1	chr2	24949457	+
5CDS-intron	ENST00000392069	ENST00000405141	PAX3	chr2	223085940	-	NCOA1	chr2	24949457	+
5CDS-intron	ENST00000392069	ENST00000407230	PAX3	chr2	223085940	-	NCOA1	chr2	24949457	+
5CDS-intron	ENST00000392069	ENST00000469850	PAX3	chr2	223085940	-	NCOA1	chr2	24949457	+
5CDS-intron	ENST00000392069	ENST00000538539	PAX3	chr2	223085940	-	NCOA1	chr2	24949457	+
5CDS-intron	ENST00000392070	ENST00000288599	PAX3	chr2	223085940	-	NCOA1	chr2	24949457	+
5CDS-intron	ENST00000392070	ENST00000348332	PAX3	chr2	223085940	-	NCOA1	chr2	24949457	+
5CDS-intron	ENST00000392070	ENST00000395856	PAX3	chr2	223085940	-	NCOA1	chr2	24949457	+
5CDS-intron	ENST00000392070	ENST00000405141	PAX3	chr2	223085940	-	NCOA1	chr2	24949457	+
5CDS-intron	ENST00000392070	ENST00000407230	PAX3	chr2	223085940	-	NCOA1	chr2	24949457	+
5CDS-intron	ENST00000392070	ENST00000469850	PAX3	chr2	223085940	-	NCOA1	chr2	24949457	+
5CDS-intron	ENST00000392070	ENST00000538539	PAX3	chr2	223085940	-	NCOA1	chr2	24949457	+
5CDS-intron	ENST00000409551	ENST00000288599	PAX3	chr2	223085940	-	NCOA1	chr2	24949457	+
5CDS-intron	ENST00000409551	ENST00000348332	PAX3	chr2	223085940	-	NCOA1	chr2	24949457	+
5CDS-intron	ENST00000409551	ENST00000395856	PAX3	chr2	223085940	-	NCOA1	chr2	24949457	+
5CDS-intron	ENST00000409551	ENST00000405141	PAX3	chr2	223085940	-	NCOA1	chr2	24949457	+
5CDS-intron	ENST00000409551	ENST00000407230	PAX3	chr2	223085940	-	NCOA1	chr2	24949457	+
5CDS-intron	ENST00000409551	ENST00000469850	PAX3	chr2	223085940	-	NCOA1	chr2	24949457	+
5CDS-intron	ENST00000409551	ENST00000538539	PAX3	chr2	223085940	-	NCOA1	chr2	24949457	+
5UTR-3CDS	ENST00000464706	ENST00000406961	PAX3	chr2	223085940	-	NCOA1	chr2	24949457	+
5UTR-intron	ENST00000464706	ENST00000288599	PAX3	chr2	223085940	-	NCOA1	chr2	24949457	+
5UTR-intron	ENST00000464706	ENST00000348332	PAX3	chr2	223085940	-	NCOA1	chr2	24949457	+
5UTR-intron	ENST00000464706	ENST00000395856	PAX3	chr2	223085940	-	NCOA1	chr2	24949457	+
5UTR-intron	ENST00000464706	ENST00000405141	PAX3	chr2	223085940	-	NCOA1	chr2	24949457	+
5UTR-intron	ENST00000464706	ENST00000407230	PAX3	chr2	223085940	-	NCOA1	chr2	24949457	+
5UTR-intron	ENST00000464706	ENST00000469850	PAX3	chr2	223085940	-	NCOA1	chr2	24949457	+
5UTR-intron	ENST00000464706	ENST00000538539	PAX3	chr2	223085940	-	NCOA1	chr2	24949457	+
In-frame	ENST00000336840	ENST00000406961	PAX3	chr2	223085940	-	NCOA1	chr2	24949457	+
In-frame	ENST00000344493	ENST00000406961	PAX3	chr2	223085940	-	NCOA1	chr2	24949457	+
In-frame	ENST00000350526	ENST00000406961	PAX3	chr2	223085940	-	NCOA1	chr2	24949457	+
In-frame	ENST00000392069	ENST00000406961	PAX3	chr2	223085940	-	NCOA1	chr2	24949457	+
In-frame	ENST00000392070	ENST00000406961	PAX3	chr2	223085940	-	NCOA1	chr2	24949457	+
In-frame	ENST00000409551	ENST00000406961	PAX3	chr2	223085940	-	NCOA1	chr2	24949457	+
intron-3CDS	ENST00000258387	ENST00000406961	PAX3	chr2	223085940	-	NCOA1	chr2	24949457	+
intron-3CDS	ENST00000258387	ENST00000406961	PAX3	chr2	223163334	-	NCOA1	chr2	24949456	+
intron-3CDS	ENST00000336840	ENST00000406961	PAX3	chr2	223163334	-	NCOA1	chr2	24949456	+
intron-3CDS	ENST00000344493	ENST00000406961	PAX3	chr2	223163334	-	NCOA1	chr2	24949456	+
intron-3CDS	ENST00000350526	ENST00000406961	PAX3	chr2	223163334	-	NCOA1	chr2	24949456	+
intron-3CDS	ENST00000392069	ENST00000406961	PAX3	chr2	223163334	-	NCOA1	chr2	24949456	+
intron-3CDS	ENST00000392070	ENST00000406961	PAX3	chr2	223163334	-	NCOA1	chr2	24949456	+
intron-3CDS	ENST00000409551	ENST00000406961	PAX3	chr2	223163334	-	NCOA1	chr2	24949456	+
intron-3CDS	ENST00000409828	ENST00000406961	PAX3	chr2	223085940	-	NCOA1	chr2	24949457	+
intron-3CDS	ENST00000409828	ENST00000406961	PAX3	chr2	223163334	-	NCOA1	chr2	24949456	+
intron-3CDS	ENST00000464706	ENST00000406961	PAX3	chr2	223163334	-	NCOA1	chr2	24949456	+
intron-intron	ENST00000258387	ENST00000288599	PAX3	chr2	222871578	-	NCOA1	chr2	24802959	+
intron-intron	ENST00000258387	ENST00000288599	PAX3	chr2	223085940	-	NCOA1	chr2	24949457	+
intron-intron	ENST00000258387	ENST00000288599	PAX3	chr2	223163334	-	NCOA1	chr2	24949456	+
intron-intron	ENST00000258387	ENST00000348332	PAX3	chr2	222871578	-	NCOA1	chr2	24802959	+
intron-intron	ENST00000258387	ENST00000348332	PAX3	chr2	223085940	-	NCOA1	chr2	24949457	+
intron-intron	ENST00000258387	ENST00000348332	PAX3	chr2	223163334	-	NCOA1	chr2	24949456	+
intron-intron	ENST00000258387	ENST00000395856	PAX3	chr2	222871578	-	NCOA1	chr2	24802959	+
intron-intron	ENST00000258387	ENST00000395856	PAX3	chr2	223085940	-	NCOA1	chr2	24949457	+
intron-intron	ENST00000258387	ENST00000395856	PAX3	chr2	223163334	-	NCOA1	chr2	24949456	+
intron-intron	ENST00000258387	ENST00000405141	PAX3	chr2	222871578	-	NCOA1	chr2	24802959	+
intron-intron	ENST00000258387	ENST00000405141	PAX3	chr2	223085940	-	NCOA1	chr2	24949457	+
intron-intron	ENST00000258387	ENST00000405141	PAX3	chr2	223163334	-	NCOA1	chr2	24949456	+
intron-intron	ENST00000258387	ENST00000406961	PAX3	chr2	222871578	-	NCOA1	chr2	24802959	+
intron-intron	ENST00000258387	ENST00000407230	PAX3	chr2	222871578	-	NCOA1	chr2	24802959	+
intron-intron	ENST00000258387	ENST00000407230	PAX3	chr2	223085940	-	NCOA1	chr2	24949457	+
intron-intron	ENST00000258387	ENST00000407230	PAX3	chr2	223163334	-	NCOA1	chr2	24949456	+
intron-intron	ENST00000258387	ENST00000469850	PAX3	chr2	222871578	-	NCOA1	chr2	24802959	+
intron-intron	ENST00000258387	ENST00000469850	PAX3	chr2	223085940	-	NCOA1	chr2	24949457	+
intron-intron	ENST00000258387	ENST00000469850	PAX3	chr2	223163334	-	NCOA1	chr2	24949456	+
intron-intron	ENST00000258387	ENST00000538539	PAX3	chr2	222871578	-	NCOA1	chr2	24802959	+
intron-intron	ENST00000258387	ENST00000538539	PAX3	chr2	223085940	-	NCOA1	chr2	24949457	+
intron-intron	ENST00000258387	ENST00000538539	PAX3	chr2	223163334	-	NCOA1	chr2	24949456	+
intron-intron	ENST00000336840	ENST00000288599	PAX3	chr2	222871578	-	NCOA1	chr2	24802959	+
intron-intron	ENST00000336840	ENST00000288599	PAX3	chr2	223163334	-	NCOA1	chr2	24949456	+
intron-intron	ENST00000336840	ENST00000348332	PAX3	chr2	222871578	-	NCOA1	chr2	24802959	+
intron-intron	ENST00000336840	ENST00000348332	PAX3	chr2	223163334	-	NCOA1	chr2	24949456	+
intron-intron	ENST00000336840	ENST00000395856	PAX3	chr2	222871578	-	NCOA1	chr2	24802959	+
intron-intron	ENST00000336840	ENST00000395856	PAX3	chr2	223163334	-	NCOA1	chr2	24949456	+
intron-intron	ENST00000336840	ENST00000405141	PAX3	chr2	222871578	-	NCOA1	chr2	24802959	+
intron-intron	ENST00000336840	ENST00000405141	PAX3	chr2	223163334	-	NCOA1	chr2	24949456	+
intron-intron	ENST00000336840	ENST00000406961	PAX3	chr2	222871578	-	NCOA1	chr2	24802959	+
intron-intron	ENST00000336840	ENST00000407230	PAX3	chr2	222871578	-	NCOA1	chr2	24802959	+
intron-intron	ENST00000336840	ENST00000407230	PAX3	chr2	223163334	-	NCOA1	chr2	24949456	+
intron-intron	ENST00000336840	ENST00000469850	PAX3	chr2	222871578	-	NCOA1	chr2	24802959	+
intron-intron	ENST00000336840	ENST00000469850	PAX3	chr2	223163334	-	NCOA1	chr2	24949456	+
intron-intron	ENST00000336840	ENST00000538539	PAX3	chr2	222871578	-	NCOA1	chr2	24802959	+
intron-intron	ENST00000336840	ENST00000538539	PAX3	chr2	223163334	-	NCOA1	chr2	24949456	+
intron-intron	ENST00000344493	ENST00000288599	PAX3	chr2	222871578	-	NCOA1	chr2	24802959	+
intron-intron	ENST00000344493	ENST00000288599	PAX3	chr2	223163334	-	NCOA1	chr2	24949456	+
intron-intron	ENST00000344493	ENST00000348332	PAX3	chr2	222871578	-	NCOA1	chr2	24802959	+
intron-intron	ENST00000344493	ENST00000348332	PAX3	chr2	223163334	-	NCOA1	chr2	24949456	+
intron-intron	ENST00000344493	ENST00000395856	PAX3	chr2	222871578	-	NCOA1	chr2	24802959	+
intron-intron	ENST00000344493	ENST00000395856	PAX3	chr2	223163334	-	NCOA1	chr2	24949456	+
intron-intron	ENST00000344493	ENST00000405141	PAX3	chr2	222871578	-	NCOA1	chr2	24802959	+
intron-intron	ENST00000344493	ENST00000405141	PAX3	chr2	223163334	-	NCOA1	chr2	24949456	+
intron-intron	ENST00000344493	ENST00000406961	PAX3	chr2	222871578	-	NCOA1	chr2	24802959	+
intron-intron	ENST00000344493	ENST00000407230	PAX3	chr2	222871578	-	NCOA1	chr2	24802959	+
intron-intron	ENST00000344493	ENST00000407230	PAX3	chr2	223163334	-	NCOA1	chr2	24949456	+
intron-intron	ENST00000344493	ENST00000469850	PAX3	chr2	222871578	-	NCOA1	chr2	24802959	+
intron-intron	ENST00000344493	ENST00000469850	PAX3	chr2	223163334	-	NCOA1	chr2	24949456	+
intron-intron	ENST00000344493	ENST00000538539	PAX3	chr2	222871578	-	NCOA1	chr2	24802959	+
intron-intron	ENST00000344493	ENST00000538539	PAX3	chr2	223163334	-	NCOA1	chr2	24949456	+
intron-intron	ENST00000350526	ENST00000288599	PAX3	chr2	222871578	-	NCOA1	chr2	24802959	+
intron-intron	ENST00000350526	ENST00000288599	PAX3	chr2	223163334	-	NCOA1	chr2	24949456	+
intron-intron	ENST00000350526	ENST00000348332	PAX3	chr2	222871578	-	NCOA1	chr2	24802959	+
intron-intron	ENST00000350526	ENST00000348332	PAX3	chr2	223163334	-	NCOA1	chr2	24949456	+
intron-intron	ENST00000350526	ENST00000395856	PAX3	chr2	222871578	-	NCOA1	chr2	24802959	+
intron-intron	ENST00000350526	ENST00000395856	PAX3	chr2	223163334	-	NCOA1	chr2	24949456	+
intron-intron	ENST00000350526	ENST00000405141	PAX3	chr2	222871578	-	NCOA1	chr2	24802959	+
intron-intron	ENST00000350526	ENST00000405141	PAX3	chr2	223163334	-	NCOA1	chr2	24949456	+
intron-intron	ENST00000350526	ENST00000406961	PAX3	chr2	222871578	-	NCOA1	chr2	24802959	+
intron-intron	ENST00000350526	ENST00000407230	PAX3	chr2	222871578	-	NCOA1	chr2	24802959	+
intron-intron	ENST00000350526	ENST00000407230	PAX3	chr2	223163334	-	NCOA1	chr2	24949456	+
intron-intron	ENST00000350526	ENST00000469850	PAX3	chr2	222871578	-	NCOA1	chr2	24802959	+
intron-intron	ENST00000350526	ENST00000469850	PAX3	chr2	223163334	-	NCOA1	chr2	24949456	+
intron-intron	ENST00000350526	ENST00000538539	PAX3	chr2	222871578	-	NCOA1	chr2	24802959	+
intron-intron	ENST00000350526	ENST00000538539	PAX3	chr2	223163334	-	NCOA1	chr2	24949456	+
intron-intron	ENST00000392069	ENST00000288599	PAX3	chr2	222871578	-	NCOA1	chr2	24802959	+
intron-intron	ENST00000392069	ENST00000288599	PAX3	chr2	223163334	-	NCOA1	chr2	24949456	+
intron-intron	ENST00000392069	ENST00000348332	PAX3	chr2	222871578	-	NCOA1	chr2	24802959	+
intron-intron	ENST00000392069	ENST00000348332	PAX3	chr2	223163334	-	NCOA1	chr2	24949456	+
intron-intron	ENST00000392069	ENST00000395856	PAX3	chr2	222871578	-	NCOA1	chr2	24802959	+
intron-intron	ENST00000392069	ENST00000395856	PAX3	chr2	223163334	-	NCOA1	chr2	24949456	+
intron-intron	ENST00000392069	ENST00000405141	PAX3	chr2	222871578	-	NCOA1	chr2	24802959	+
intron-intron	ENST00000392069	ENST00000405141	PAX3	chr2	223163334	-	NCOA1	chr2	24949456	+
intron-intron	ENST00000392069	ENST00000406961	PAX3	chr2	222871578	-	NCOA1	chr2	24802959	+
intron-intron	ENST00000392069	ENST00000407230	PAX3	chr2	222871578	-	NCOA1	chr2	24802959	+
intron-intron	ENST00000392069	ENST00000407230	PAX3	chr2	223163334	-	NCOA1	chr2	24949456	+
intron-intron	ENST00000392069	ENST00000469850	PAX3	chr2	222871578	-	NCOA1	chr2	24802959	+
intron-intron	ENST00000392069	ENST00000469850	PAX3	chr2	223163334	-	NCOA1	chr2	24949456	+
intron-intron	ENST00000392069	ENST00000538539	PAX3	chr2	222871578	-	NCOA1	chr2	24802959	+
intron-intron	ENST00000392069	ENST00000538539	PAX3	chr2	223163334	-	NCOA1	chr2	24949456	+
intron-intron	ENST00000392070	ENST00000288599	PAX3	chr2	222871578	-	NCOA1	chr2	24802959	+
intron-intron	ENST00000392070	ENST00000288599	PAX3	chr2	223163334	-	NCOA1	chr2	24949456	+
intron-intron	ENST00000392070	ENST00000348332	PAX3	chr2	222871578	-	NCOA1	chr2	24802959	+
intron-intron	ENST00000392070	ENST00000348332	PAX3	chr2	223163334	-	NCOA1	chr2	24949456	+
intron-intron	ENST00000392070	ENST00000395856	PAX3	chr2	222871578	-	NCOA1	chr2	24802959	+
intron-intron	ENST00000392070	ENST00000395856	PAX3	chr2	223163334	-	NCOA1	chr2	24949456	+
intron-intron	ENST00000392070	ENST00000405141	PAX3	chr2	222871578	-	NCOA1	chr2	24802959	+
intron-intron	ENST00000392070	ENST00000405141	PAX3	chr2	223163334	-	NCOA1	chr2	24949456	+
intron-intron	ENST00000392070	ENST00000406961	PAX3	chr2	222871578	-	NCOA1	chr2	24802959	+
intron-intron	ENST00000392070	ENST00000407230	PAX3	chr2	222871578	-	NCOA1	chr2	24802959	+
intron-intron	ENST00000392070	ENST00000407230	PAX3	chr2	223163334	-	NCOA1	chr2	24949456	+
intron-intron	ENST00000392070	ENST00000469850	PAX3	chr2	222871578	-	NCOA1	chr2	24802959	+
intron-intron	ENST00000392070	ENST00000469850	PAX3	chr2	223163334	-	NCOA1	chr2	24949456	+
intron-intron	ENST00000392070	ENST00000538539	PAX3	chr2	222871578	-	NCOA1	chr2	24802959	+
intron-intron	ENST00000392070	ENST00000538539	PAX3	chr2	223163334	-	NCOA1	chr2	24949456	+
intron-intron	ENST00000409551	ENST00000288599	PAX3	chr2	222871578	-	NCOA1	chr2	24802959	+
intron-intron	ENST00000409551	ENST00000288599	PAX3	chr2	223163334	-	NCOA1	chr2	24949456	+
intron-intron	ENST00000409551	ENST00000348332	PAX3	chr2	222871578	-	NCOA1	chr2	24802959	+
intron-intron	ENST00000409551	ENST00000348332	PAX3	chr2	223163334	-	NCOA1	chr2	24949456	+
intron-intron	ENST00000409551	ENST00000395856	PAX3	chr2	222871578	-	NCOA1	chr2	24802959	+
intron-intron	ENST00000409551	ENST00000395856	PAX3	chr2	223163334	-	NCOA1	chr2	24949456	+
intron-intron	ENST00000409551	ENST00000405141	PAX3	chr2	222871578	-	NCOA1	chr2	24802959	+
intron-intron	ENST00000409551	ENST00000405141	PAX3	chr2	223163334	-	NCOA1	chr2	24949456	+
intron-intron	ENST00000409551	ENST00000406961	PAX3	chr2	222871578	-	NCOA1	chr2	24802959	+
intron-intron	ENST00000409551	ENST00000407230	PAX3	chr2	222871578	-	NCOA1	chr2	24802959	+
intron-intron	ENST00000409551	ENST00000407230	PAX3	chr2	223163334	-	NCOA1	chr2	24949456	+
intron-intron	ENST00000409551	ENST00000469850	PAX3	chr2	222871578	-	NCOA1	chr2	24802959	+
intron-intron	ENST00000409551	ENST00000469850	PAX3	chr2	223163334	-	NCOA1	chr2	24949456	+
intron-intron	ENST00000409551	ENST00000538539	PAX3	chr2	222871578	-	NCOA1	chr2	24802959	+
intron-intron	ENST00000409551	ENST00000538539	PAX3	chr2	223163334	-	NCOA1	chr2	24949456	+
intron-intron	ENST00000409828	ENST00000288599	PAX3	chr2	222871578	-	NCOA1	chr2	24802959	+
intron-intron	ENST00000409828	ENST00000288599	PAX3	chr2	223085940	-	NCOA1	chr2	24949457	+
intron-intron	ENST00000409828	ENST00000288599	PAX3	chr2	223163334	-	NCOA1	chr2	24949456	+
intron-intron	ENST00000409828	ENST00000348332	PAX3	chr2	222871578	-	NCOA1	chr2	24802959	+
intron-intron	ENST00000409828	ENST00000348332	PAX3	chr2	223085940	-	NCOA1	chr2	24949457	+
intron-intron	ENST00000409828	ENST00000348332	PAX3	chr2	223163334	-	NCOA1	chr2	24949456	+
intron-intron	ENST00000409828	ENST00000395856	PAX3	chr2	222871578	-	NCOA1	chr2	24802959	+
intron-intron	ENST00000409828	ENST00000395856	PAX3	chr2	223085940	-	NCOA1	chr2	24949457	+
intron-intron	ENST00000409828	ENST00000395856	PAX3	chr2	223163334	-	NCOA1	chr2	24949456	+
intron-intron	ENST00000409828	ENST00000405141	PAX3	chr2	222871578	-	NCOA1	chr2	24802959	+
intron-intron	ENST00000409828	ENST00000405141	PAX3	chr2	223085940	-	NCOA1	chr2	24949457	+
intron-intron	ENST00000409828	ENST00000405141	PAX3	chr2	223163334	-	NCOA1	chr2	24949456	+
intron-intron	ENST00000409828	ENST00000406961	PAX3	chr2	222871578	-	NCOA1	chr2	24802959	+
intron-intron	ENST00000409828	ENST00000407230	PAX3	chr2	222871578	-	NCOA1	chr2	24802959	+
intron-intron	ENST00000409828	ENST00000407230	PAX3	chr2	223085940	-	NCOA1	chr2	24949457	+
intron-intron	ENST00000409828	ENST00000407230	PAX3	chr2	223163334	-	NCOA1	chr2	24949456	+
intron-intron	ENST00000409828	ENST00000469850	PAX3	chr2	222871578	-	NCOA1	chr2	24802959	+
intron-intron	ENST00000409828	ENST00000469850	PAX3	chr2	223085940	-	NCOA1	chr2	24949457	+
intron-intron	ENST00000409828	ENST00000469850	PAX3	chr2	223163334	-	NCOA1	chr2	24949456	+
intron-intron	ENST00000409828	ENST00000538539	PAX3	chr2	222871578	-	NCOA1	chr2	24802959	+
intron-intron	ENST00000409828	ENST00000538539	PAX3	chr2	223085940	-	NCOA1	chr2	24949457	+
intron-intron	ENST00000409828	ENST00000538539	PAX3	chr2	223163334	-	NCOA1	chr2	24949456	+
intron-intron	ENST00000464706	ENST00000288599	PAX3	chr2	222871578	-	NCOA1	chr2	24802959	+
intron-intron	ENST00000464706	ENST00000288599	PAX3	chr2	223163334	-	NCOA1	chr2	24949456	+
intron-intron	ENST00000464706	ENST00000348332	PAX3	chr2	222871578	-	NCOA1	chr2	24802959	+
intron-intron	ENST00000464706	ENST00000348332	PAX3	chr2	223163334	-	NCOA1	chr2	24949456	+
intron-intron	ENST00000464706	ENST00000395856	PAX3	chr2	222871578	-	NCOA1	chr2	24802959	+
intron-intron	ENST00000464706	ENST00000395856	PAX3	chr2	223163334	-	NCOA1	chr2	24949456	+
intron-intron	ENST00000464706	ENST00000405141	PAX3	chr2	222871578	-	NCOA1	chr2	24802959	+
intron-intron	ENST00000464706	ENST00000405141	PAX3	chr2	223163334	-	NCOA1	chr2	24949456	+
intron-intron	ENST00000464706	ENST00000406961	PAX3	chr2	222871578	-	NCOA1	chr2	24802959	+
intron-intron	ENST00000464706	ENST00000407230	PAX3	chr2	222871578	-	NCOA1	chr2	24802959	+
intron-intron	ENST00000464706	ENST00000407230	PAX3	chr2	223163334	-	NCOA1	chr2	24949456	+
intron-intron	ENST00000464706	ENST00000469850	PAX3	chr2	222871578	-	NCOA1	chr2	24802959	+
intron-intron	ENST00000464706	ENST00000469850	PAX3	chr2	223163334	-	NCOA1	chr2	24949456	+
intron-intron	ENST00000464706	ENST00000538539	PAX3	chr2	222871578	-	NCOA1	chr2	24802959	+
intron-intron	ENST00000464706	ENST00000538539	PAX3	chr2	223163334	-	NCOA1	chr2	24949456	+

ORFfinder result based on the fusion transcript sequence of in-frame fusion genes.

Henst	Tenst	Hgene	Hchr	Hbp	Hstrand	Tgene	Tchr	Tbp	Tstrand	Seq length (transcript)	BP loci (transcript)	Predicted start (transcript)	Predicted stop (transcript)	Seq length (amino acids)
ENST00000392069	PAX3	chr2	223085940	-	ENST00000406961	NCOA1	chr2	24949456	+	5362	1324	366	3050	894
ENST00000344493	PAX3	chr2	223085940	-	ENST00000406961	NCOA1	chr2	24949456	+	5377	1339	381	3065	894
ENST00000350526	PAX3	chr2	223085940	-	ENST00000406961	NCOA1	chr2	24949456	+	5133	1095	137	2821	894
ENST00000336840	PAX3	chr2	223085940	-	ENST00000406961	NCOA1	chr2	24949456	+	5377	1339	381	3065	894
ENST00000392070	PAX3	chr2	223085940	-	ENST00000406961	NCOA1	chr2	24949456	+	5377	1339	381	3065	894
ENST00000409551	PAX3	chr2	223085940	-	ENST00000406961	NCOA1	chr2	24949456	+	5273	1235	280	2961	893

DeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated.

Henst	Tenst	Hgene	Hchr	Hbp	Hstrand	Tgene	Tchr	Tbp	Tstrand	No-coding score	Coding score
ENST00000392069	ENST00000406961	PAX3	chr2	223085940	-	NCOA1	chr2	24949456	+	0.002772576	0.9972274
ENST00000344493	ENST00000406961	PAX3	chr2	223085940	-	NCOA1	chr2	24949456	+	0.002693614	0.99730635
ENST00000350526	ENST00000406961	PAX3	chr2	223085940	-	NCOA1	chr2	24949456	+	0.002572114	0.9974279
ENST00000336840	ENST00000406961	PAX3	chr2	223085940	-	NCOA1	chr2	24949456	+	0.002693614	0.99730635
ENST00000392070	ENST00000406961	PAX3	chr2	223085940	-	NCOA1	chr2	24949456	+	0.002693614	0.99730635
ENST00000409551	ENST00000406961	PAX3	chr2	223085940	-	NCOA1	chr2	24949456	+	0.002581034	0.997419

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Fusion Genomic Features for PAX3-NCOA1

FusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints.

Hgene	Hchr	Hbp	Hstrand	Tgene	Tchr	Tbp	Tstrand	1-p	p (fusion gene breakpoint)
PAX3	chr2	223085940	-	NCOA1	chr2	24949457	+	0.000227177	0.99977285
PAX3	chr2	223085940	-	NCOA1	chr2	24949457	+	0.000227177	0.99977285

Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page.

Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page.

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Fusion Protein Features for PAX3-NCOA1

Go to
FGviewer for the breakpoints of chr2:223085940-chr2:24949456
.
- FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels.

Main function of each fusion partner protein. (from UniProt)

Hgene	Tgene
.	NCOA1 Q15788
FUNCTION: Might normally function as a transcriptional repressor. EWS-fusion-proteins (EFPS) may play a role in the tumorigenic process. They may disturb gene expression by mimicking, or interfering with the normal function of CTD-POLII within the transcription initiation complex. They may also contribute to an aberrant activation of the fusion protein target genes.	FUNCTION: Nuclear receptor coactivator that directly binds nuclear receptors and stimulates the transcriptional activities in a hormone-dependent fashion. Involved in the coactivation of different nuclear receptors, such as for steroids (PGR, GR and ER), retinoids (RXRs), thyroid hormone (TRs) and prostanoids (PPARs). Also involved in coactivation mediated by STAT3, STAT5A, STAT5B and STAT6 transcription factors. Displays histone acetyltransferase activity toward H3 and H4; the relevance of such activity remains however unclear. Plays a central role in creating multisubunit coactivator complexes that act via remodeling of chromatin, and possibly acts by participating in both chromatin remodeling and recruitment of general transcription factors. Required with NCOA2 to control energy balance between white and brown adipose tissues. Required for mediating steroid hormone response. Isoform 2 has a higher thyroid hormone-dependent transactivation activity than isoform 1 and isoform 3. {ECO:0000269\|PubMed:10449719, ECO:0000269\|PubMed:12954634, ECO:0000269\|PubMed:7481822, ECO:0000269\|PubMed:9223281, ECO:0000269\|PubMed:9223431, ECO:0000269\|PubMed:9296499, ECO:0000269\|PubMed:9427757}.

Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at
download page

* Minus value of BPloci means that the break pointn is located before the CDS.

- In-frame and retained protein feature among the 13 regional features.

Partner

Gene

Hbp

Tbp

ENST

Strand

BPexon

TotalExon

Protein feature loci

*BPloci

TotalLen

Protein feature

Protein feature note

Hgene

PAX3

chr2:223085940

chr2:24949456

ENST00000336840

219_278

319.3333333333333

408.0

DNA binding

Homeobox

Hgene

PAX3

chr2:223085940

chr2:24949456

ENST00000336840

34_161

319.3333333333333

408.0

DNA binding

Paired

Hgene

PAX3

chr2:223085940

chr2:24949456

ENST00000344493

219_278

319.3333333333333

404.0

DNA binding

Homeobox

Hgene

PAX3

chr2:223085940

chr2:24949456

ENST00000344493

34_161

319.3333333333333

404.0

DNA binding

Paired

Hgene

PAX3

chr2:223085940

chr2:24949456

ENST00000350526

219_278

319.3333333333333

480.0

DNA binding

Homeobox

Hgene

PAX3

chr2:223085940

chr2:24949456

ENST00000350526

34_161

319.3333333333333

480.0

DNA binding

Paired

Hgene

PAX3

chr2:223085940

chr2:24949456

ENST00000392069

219_278

319.3333333333333

506.0

DNA binding

Homeobox

Hgene

PAX3

chr2:223085940

chr2:24949456

ENST00000392069

34_161

319.3333333333333

506.0

DNA binding

Paired

Hgene

PAX3

chr2:223085940

chr2:24949456

ENST00000392070

219_278

319.3333333333333

485.0

DNA binding

Homeobox

Hgene

PAX3

chr2:223085940

chr2:24949456

ENST00000392070

34_161

319.3333333333333

485.0

DNA binding

Paired

Hgene

PAX3

chr2:223085940

chr2:24949456

ENST00000409551

219_278

318.3333333333333

484.0

DNA binding

Homeobox

Hgene

PAX3

chr2:223085940

chr2:24949456

ENST00000409551

34_161

318.3333333333333

484.0

DNA binding

Paired

Hgene

PAX3

chr2:223085940

chr2:24949456

ENST00000336840

113_161

319.3333333333333

408.0

Region

RED subdomain

Hgene

PAX3

chr2:223085940

chr2:24949456

ENST00000336840

37_93

319.3333333333333

408.0

Region

PAI subdomain

Hgene

PAX3

chr2:223085940

chr2:24949456

ENST00000344493

113_161

319.3333333333333

404.0

Region

RED subdomain

Hgene

PAX3

chr2:223085940

chr2:24949456

ENST00000344493

37_93

319.3333333333333

404.0

Region

PAI subdomain

Hgene

PAX3

chr2:223085940

chr2:24949456

ENST00000350526

113_161

319.3333333333333

480.0

Region

RED subdomain

Hgene

PAX3

chr2:223085940

chr2:24949456

ENST00000350526

37_93

319.3333333333333

480.0

Region

PAI subdomain

Hgene

PAX3

chr2:223085940

chr2:24949456

ENST00000392069

113_161

319.3333333333333

506.0

Region

RED subdomain

Hgene

PAX3

chr2:223085940

chr2:24949456

ENST00000392069

37_93

319.3333333333333

506.0

Region

PAI subdomain

Hgene

PAX3

chr2:223085940

chr2:24949456

ENST00000392070

113_161

319.3333333333333

485.0

Region

RED subdomain

Hgene

PAX3

chr2:223085940

chr2:24949456

ENST00000392070

37_93

319.3333333333333

485.0

Region

PAI subdomain

Hgene

PAX3

chr2:223085940

chr2:24949456

ENST00000409551

113_161

318.3333333333333

484.0

Region

RED subdomain

Hgene

PAX3

chr2:223085940

chr2:24949456

ENST00000409551

37_93

318.3333333333333

484.0

Region

PAI subdomain

Tgene

NCOA1

chr2:223085940

chr2:24949456

ENST00000288599

1053_1138

866.3333333333334

2199.3333333333335

Compositional bias

Note=Gln-rich

Tgene

NCOA1

chr2:223085940

chr2:24949456

ENST00000348332

1053_1138

866.3333333333334

1442.0

Compositional bias

Note=Gln-rich

Tgene

NCOA1

chr2:223085940

chr2:24949456

ENST00000395856

1053_1138

866.3333333333334

1441.0

Compositional bias

Note=Gln-rich

Tgene

NCOA1

chr2:223085940

chr2:24949456

ENST00000405141

1053_1138

866.3333333333334

2183.6666666666665

Compositional bias

Note=Gln-rich

Tgene

NCOA1

chr2:223085940

chr2:24949456

ENST00000406961

1053_1138

866.3333333333334

1442.0

Compositional bias

Note=Gln-rich

Tgene

NCOA1

chr2:223085940

chr2:24949456

ENST00000538539

1053_1138

866.3333333333334

1422.6666666666667

Compositional bias

Note=Gln-rich

Tgene

NCOA1

chr2:223085940

chr2:24949456

ENST00000288599

1435_1439

866.3333333333334

2199.3333333333335

Motif

Note=LXXLL motif 7

Tgene

NCOA1

chr2:223085940

chr2:24949456

ENST00000288599

913_917

866.3333333333334

2199.3333333333335

Motif

Note=LXXLL motif 6

Tgene

NCOA1

chr2:223085940

chr2:24949456

ENST00000348332

1435_1439

866.3333333333334

1442.0

Motif

Note=LXXLL motif 7

Tgene

NCOA1

chr2:223085940

chr2:24949456

ENST00000348332

913_917

866.3333333333334

1442.0

Motif

Note=LXXLL motif 6

Tgene

NCOA1

chr2:223085940

chr2:24949456

ENST00000395856

1435_1439

866.3333333333334

1441.0

Motif

Note=LXXLL motif 7

Tgene

NCOA1

chr2:223085940

chr2:24949456

ENST00000395856

913_917

866.3333333333334

1441.0

Motif

Note=LXXLL motif 6

Tgene

NCOA1

chr2:223085940

chr2:24949456

ENST00000405141

1435_1439

866.3333333333334

2183.6666666666665

Motif

Note=LXXLL motif 7

Tgene

NCOA1

chr2:223085940

chr2:24949456

ENST00000405141

913_917

866.3333333333334

2183.6666666666665

Motif

Note=LXXLL motif 6

Tgene

NCOA1

chr2:223085940

chr2:24949456

ENST00000406961

1435_1439

866.3333333333334

1442.0

Motif

Note=LXXLL motif 7

Tgene

NCOA1

chr2:223085940

chr2:24949456

ENST00000406961

913_917

866.3333333333334

1442.0

Motif

Note=LXXLL motif 6

Tgene

NCOA1

chr2:223085940

chr2:24949456

ENST00000538539

1435_1439

866.3333333333334

1422.6666666666667

Motif

Note=LXXLL motif 7

Tgene

NCOA1

chr2:223085940

chr2:24949456

ENST00000538539

913_917

866.3333333333334

1422.6666666666667

Motif

Note=LXXLL motif 6

- In-frame and not-retained protein feature among the 13 regional features.

Partner

Gene

Hbp

Tbp

ENST

Strand

BPexon

TotalExon

Protein feature loci

*BPloci

TotalLen

Protein feature

Protein feature note

Hgene

PAX3

chr2:223085940

chr2:24949456

ENST00000258387

219_278

207.0

DNA binding

Homeobox

Hgene

PAX3

chr2:223085940

chr2:24949456

ENST00000258387

34_161

207.0

DNA binding

Paired

Hgene

PAX3

chr2:223085940

chr2:24949456

ENST00000409828

219_278

216.0

DNA binding

Homeobox

Hgene

PAX3

chr2:223085940

chr2:24949456

ENST00000409828

34_161

216.0

DNA binding

Paired

Hgene

PAX3

chr2:223085940

chr2:24949456

ENST00000258387

113_161

207.0

Region

RED subdomain

Hgene

PAX3

chr2:223085940

chr2:24949456

ENST00000258387

37_93

207.0

Region

PAI subdomain

Hgene

PAX3

chr2:223085940

chr2:24949456

ENST00000409828

113_161

216.0

Region

RED subdomain

Hgene

PAX3

chr2:223085940

chr2:24949456

ENST00000409828

37_93

216.0

Region

PAI subdomain

Tgene

NCOA1

chr2:223085940

chr2:24949456

ENST00000288599

389_682

866.3333333333334

2199.3333333333335

Compositional bias

Note=Ser-rich

Tgene

NCOA1

chr2:223085940

chr2:24949456

ENST00000348332

389_682

866.3333333333334

1442.0

Compositional bias

Note=Ser-rich

Tgene

NCOA1

chr2:223085940

chr2:24949456

ENST00000395856

389_682

866.3333333333334

1441.0

Compositional bias

Note=Ser-rich

Tgene

NCOA1

chr2:223085940

chr2:24949456

ENST00000405141

389_682

866.3333333333334

2183.6666666666665

Compositional bias

Note=Ser-rich

Tgene

NCOA1

chr2:223085940

chr2:24949456

ENST00000406961

389_682

866.3333333333334

1442.0

Compositional bias

Note=Ser-rich

Tgene

NCOA1

chr2:223085940

chr2:24949456

ENST00000538539

389_682

866.3333333333334

1422.6666666666667

Compositional bias

Note=Ser-rich

Tgene

NCOA1

chr2:223085940

chr2:24949456

ENST00000288599

109_180

866.3333333333334

2199.3333333333335

Domain

PAS

Tgene

NCOA1

chr2:223085940

chr2:24949456

ENST00000288599

23_80

866.3333333333334

2199.3333333333335

Domain

bHLH

Tgene

NCOA1

chr2:223085940

chr2:24949456

ENST00000348332

109_180

866.3333333333334

1442.0

Domain

PAS

Tgene

NCOA1

chr2:223085940

chr2:24949456

ENST00000348332

23_80

866.3333333333334

1442.0

Domain

bHLH

Tgene

NCOA1

chr2:223085940

chr2:24949456

ENST00000395856

109_180

866.3333333333334

1441.0

Domain

PAS

Tgene

NCOA1

chr2:223085940

chr2:24949456

ENST00000395856

23_80

866.3333333333334

1441.0

Domain

bHLH

Tgene

NCOA1

chr2:223085940

chr2:24949456

ENST00000405141

109_180

866.3333333333334

2183.6666666666665

Domain

PAS

Tgene

NCOA1

chr2:223085940

chr2:24949456

ENST00000405141

23_80

866.3333333333334

2183.6666666666665

Domain

bHLH

Tgene

NCOA1

chr2:223085940

chr2:24949456

ENST00000406961

109_180

866.3333333333334

1442.0

Domain

PAS

Tgene

NCOA1

chr2:223085940

chr2:24949456

ENST00000406961

23_80

866.3333333333334

1442.0

Domain

bHLH

Tgene

NCOA1

chr2:223085940

chr2:24949456

ENST00000538539

109_180

866.3333333333334

1422.6666666666667

Domain

PAS

Tgene

NCOA1

chr2:223085940

chr2:24949456

ENST00000538539

23_80

866.3333333333334

1422.6666666666667

Domain

bHLH

Tgene

NCOA1

chr2:223085940

chr2:24949456

ENST00000288599

112_116

866.3333333333334

2199.3333333333335

Motif

Note=LXXLL motif 2

Tgene

NCOA1

chr2:223085940

chr2:24949456

ENST00000288599

46_50

866.3333333333334

2199.3333333333335

Motif

Note=LXXLL motif 1

Tgene

NCOA1

chr2:223085940

chr2:24949456

ENST00000288599

633_637

866.3333333333334

2199.3333333333335

Motif

Note=LXXLL motif 3

Tgene

NCOA1

chr2:223085940

chr2:24949456

ENST00000288599

690_694

866.3333333333334

2199.3333333333335

Motif

Note=LXXLL motif 4

Tgene

NCOA1

chr2:223085940

chr2:24949456

ENST00000288599

749_753

866.3333333333334

2199.3333333333335

Motif

Note=LXXLL motif 5

Tgene

NCOA1

chr2:223085940

chr2:24949456

ENST00000348332

112_116

866.3333333333334

1442.0

Motif

Note=LXXLL motif 2

Tgene

NCOA1

chr2:223085940

chr2:24949456

ENST00000348332

46_50

866.3333333333334

1442.0

Motif

Note=LXXLL motif 1

Tgene

NCOA1

chr2:223085940

chr2:24949456

ENST00000348332

633_637

866.3333333333334

1442.0

Motif

Note=LXXLL motif 3

Tgene

NCOA1

chr2:223085940

chr2:24949456

ENST00000348332

690_694

866.3333333333334

1442.0

Motif

Note=LXXLL motif 4

Tgene

NCOA1

chr2:223085940

chr2:24949456

ENST00000348332

749_753

866.3333333333334

1442.0

Motif

Note=LXXLL motif 5

Tgene

NCOA1

chr2:223085940

chr2:24949456

ENST00000395856

112_116

866.3333333333334

1441.0

Motif

Note=LXXLL motif 2

Tgene

NCOA1

chr2:223085940

chr2:24949456

ENST00000395856

46_50

866.3333333333334

1441.0

Motif

Note=LXXLL motif 1

Tgene

NCOA1

chr2:223085940

chr2:24949456

ENST00000395856

633_637

866.3333333333334

1441.0

Motif

Note=LXXLL motif 3

Tgene

NCOA1

chr2:223085940

chr2:24949456

ENST00000395856

690_694

866.3333333333334

1441.0

Motif

Note=LXXLL motif 4

Tgene

NCOA1

chr2:223085940

chr2:24949456

ENST00000395856

749_753

866.3333333333334

1441.0

Motif

Note=LXXLL motif 5

Tgene

NCOA1

chr2:223085940

chr2:24949456

ENST00000405141

112_116

866.3333333333334

2183.6666666666665

Motif

Note=LXXLL motif 2

Tgene

NCOA1

chr2:223085940

chr2:24949456

ENST00000405141

46_50

866.3333333333334

2183.6666666666665

Motif

Note=LXXLL motif 1

Tgene

NCOA1

chr2:223085940

chr2:24949456

ENST00000405141

633_637

866.3333333333334

2183.6666666666665

Motif

Note=LXXLL motif 3

Tgene

NCOA1

chr2:223085940

chr2:24949456

ENST00000405141

690_694

866.3333333333334

2183.6666666666665

Motif

Note=LXXLL motif 4

Tgene

NCOA1

chr2:223085940

chr2:24949456

ENST00000405141

749_753

866.3333333333334

2183.6666666666665

Motif

Note=LXXLL motif 5

Tgene

NCOA1

chr2:223085940

chr2:24949456

ENST00000406961

112_116

866.3333333333334

1442.0

Motif

Note=LXXLL motif 2

Tgene

NCOA1

chr2:223085940

chr2:24949456

ENST00000406961

46_50

866.3333333333334

1442.0

Motif

Note=LXXLL motif 1

Tgene

NCOA1

chr2:223085940

chr2:24949456

ENST00000406961

633_637

866.3333333333334

1442.0

Motif

Note=LXXLL motif 3

Tgene

NCOA1

chr2:223085940

chr2:24949456

ENST00000406961

690_694

866.3333333333334

1442.0

Motif

Note=LXXLL motif 4

Tgene

NCOA1

chr2:223085940

chr2:24949456

ENST00000406961

749_753

866.3333333333334

1442.0

Motif

Note=LXXLL motif 5

Tgene

NCOA1

chr2:223085940

chr2:24949456

ENST00000538539

112_116

866.3333333333334

1422.6666666666667

Motif

Note=LXXLL motif 2

Tgene

NCOA1

chr2:223085940

chr2:24949456

ENST00000538539

46_50

866.3333333333334

1422.6666666666667

Motif

Note=LXXLL motif 1

Tgene

NCOA1

chr2:223085940

chr2:24949456

ENST00000538539

633_637

866.3333333333334

1422.6666666666667

Motif

Note=LXXLL motif 3

Tgene

NCOA1

chr2:223085940

chr2:24949456

ENST00000538539

690_694

866.3333333333334

1422.6666666666667

Motif

Note=LXXLL motif 4

Tgene

NCOA1

chr2:223085940

chr2:24949456

ENST00000538539

749_753

866.3333333333334

1422.6666666666667

Motif

Note=LXXLL motif 5

Top

Fusion Gene Sequence for PAX3-NCOA1

For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones.

>In-frame_ENST00000392069_ENST00000406961_AY633656_PAX3_chr2_223085940_-_NCOA1_chr2_24949456_length(transcript)=5362nt_BP=1324nt
AGGAGGAGACTCAGGCAGGCCGCGCTCCAGCCTCACCAGGCTCCCCGGCTCGCCGTGGCTCTCTGAGCCCCCTTTTCAGGGACCCCAGTC
GCTGGAACATTTGCCCAGACTCGTACCAAACTTTTCCGCCCTGGGCTCGGGATCCTGGACTCCGGGGCCTCCCCGTCCTCCCCTTTCCCG
GGTTCCAGCTCCGGCCTCTGGACTAGGAACCGACAGCCCCCCTCCCCGCGTCCCTCCCTCTCTCTCCAGCCGTTTTGGGGAGGGGCTCTC
CACGCTCCGGATAGTTCCCGAGGGTCATCCGCGCCGCACTCGCCTTTCCGTTTCGCCTTCACCTGGATATAATTTCCGAGCGAAGCTGCC
CCCAGGATGACCACGCTGGCCGGCGCTGTGCCCAGGATGATGCGGCCGGGCCCGGGGCAGAACTACCCGCGTAGCGGGTTCCCGCTGGAA
GTGTCCACTCCCCTCGGCCAGGGCCGCGTCAACCAGCTCGGCGGTGTTTTTATCAACGGCAGGCCGCTGCCCAACCACATCCGCCACAAG
ATCGTGGAGATGGCCCACCACGGCATCCGGCCCTGCGTCATCTCGCGCCAGCTGCGCGTGTCCCACGGCTGCGTCTCCAAGATCCTGTGC
AGGTACCAGGAGACTGGCTCCATACGTCCTGGTGCCATCGGCGGCAGCAAGCCCAAGCAGGTGACAACGCCTGACGTGGAGAAGAAAATT
GAGGAATACAAAAGAGAGAACCCGGGCATGTTCAGCTGGGAAATCCGAGACAAATTACTCAAGGACGCGGTCTGTGATCGAAACACCGTG
CCGTCAGTGAGTTCCATCAGCCGCATCCTGAGAAGTAAATTCGGGAAAGGTGAAGAGGAGGAGGCCGACTTGGAGAGGAAGGAGGCAGAG
GAAAGCGAGAAGAAGGCCAAACACAGCATCGACGGCATCCTGAGCGAGCGAGCCTCAGCACCCCAATCAGATGAAGGCTCTGATATTGAC
TCTGAACCAGATTTACCACTAAAGAGGAAACAGCGCAGAAGCCGAACCACCTTCACAGCAGAACAGCTGGAGGAACTGGAGCGTGCTTTT
GAGAGAACTCATTACCCTGACATTTATACTAGGGAGGAACTGGCCCAGAGGGCGAAGCTCACCGAGGCCCGAGTACAGGTCTGGTTTAGC
AACCGCCGTGCAAGATGGAGGAAGCAAGCTGGGGCCAATCAACTGATGGCTTTCAACCATCTCATTCCCGGGGGGTTCCCTCCCACTGCC
ATGCCGACCTTGCCAACGTACCAGCTGTCGGAGACCTCTTACCAGCCCACATCTATTCCACAAGGATTACCTGAGCTGGAATTGGAAGCA
ATTGATAACCAATTTGGACAACCAGGAACAGGCGATCAGATTCCATGGACAAATAATACAGTGACAGCTATAAATCAGAGTAAATCAGAA
GACCAGTGTATTAGCTCACAATTAGATGAGCTTCTCTGTCCACCCACAACAGTAGAAGGGAGAAATGATGAGAAGGCTCTTCTTGAACAG
CTGGTATCCTTCCTTAGTGGCAAAGATGAAACTGAGCTAGCTGAACTAGACAGAGCTCTGGGAATTGACAAACTTGTTCAGGGGGGTGGA
TTAGATGTATTATCAGAGAGATTTCCACCACAACAAGCAACGCCACCTTTGATCATGGAAGAAAGACCCAACCTTTATTCCCAGCCTTAC
TCTTCTCCTTCTCCTACTGCCAATCTCCCTAGCCCTTTCCAAGGCATGGTCAGGCAAAAACCTTCACTGGGGACGATGCCTGTTCAAGTA
ACACCTCCCCGAGGTGCTTTTTCACCTGGCATGGGCATGCAGCCCAGGCAAACTCTAAACAGACCTCCGGCTGCACCTAACCAGCTTCGA
CTTCAACTACAGCAGCGATTACAGGGACAACAGCAGTTGATACACCAAAATCGGCAAGCTATCTTAAACCAGTTTGCAGCAACTGCTCCT
GTTGGCATCAATATGAGATCAGGCATGCAACAGCAAATTACACCTCAGCCACCCCTGAATGCTCAAATGTTGGCACAACGTCAGCGGGAA
CTGTACAGTCAACAGCACCGACAGAGGCAGCTAATACAGCAGCAAAGAGCCATGCTTATGAGGCAGCAAAGCTTTGGGAACAACCTCCCT
CCCTCATCTGGACTACCAGTTCAAATGGGGAACCCCCGTCTTCCTCAGGGTGCTCCACAGCAATTCCCCTATCCACCAAACTATGGTACA
AATCCAGGAACCCCACCTGCTTCTACCAGCCCGTTTTCACAACTAGCAGCAAATCCTGAAGCATCCTTGGCCAACCGCAACAGCATGGTG
AGCAGAGGCATGACAGGAAACATAGGAGGACAGTTTGGCACTGGAATCAATCCTCAGATGCAGCAGAATGTCTTCCAGTATCCAGGAGCA
GGAATGGTTCCCCAAGGTGAGGCCAACTTTGCTCCATCTCTAAGCCCTGGGAGCTCCATGGTGCCGATGCCAATCCCTCCTCCTCAGAGT
TCTCTTCTCCAGCAAACTCCACCTGCCTCCGGGTATCAGTCACCAGACATGAAGGCCTGGCAGCAAGGAGCGATAGGAAACAACAATGTG
TTCAGTCAAGCTGTCCAGAACCAGCCCACGCCTGCACAGCCAGGAGTATACAACAACATGAGCATCACCGTTTCCATGGCAGGTGGAAAT
ACGAATGTTCAGAACATGAACCCAATGATGGCCCAGATGCAGATGAGCTCTTTGCAGATGCCAGGAATGAACACTGTGTGCCCTGAGCAG
ATAAATGATCCCGCACTGAGACACACAGGCCTCTACTGCAACCAGCTCTCATCCACTGACCTTCTCAAAACAGAAGCAGATGGAACCCAG
CAGGTGCAACAGGTTCAGGTGTTTGCTGACGTCCAGTGTACAGTGAATCTGGTAGGCGGGGACCCTTACCTGAACCAGCCTGGTCCACTG
GGAACTCAAAAGCCCACGTCAGGACCACAGACCCCCCAGGCCCAGCAGAAGAGCCTCCTTCAGCAGCTACTGACTGAATAACCACTTTTA
AAGGAATGTGAAATTTAAATAATAGACATACAGAGATATACAAATATATTATATATTTTTCTGAGATTTTTGATATCTCAATCTGCAGCC
ATTCTTCAGGTCGTAGCATTTGGAGCAAAAAAAAAAAAAAAAAAAAAAAAAGGAGTTTGCTTTTGTCGGGAGATTGAAAGATGTTTTTGT
TTCTTTCTTTGTAAAGGCCTTGGATATTGAAAAAATACCAAGGCAGAACAGTTGGACAATCTATTTCTTGAGCCAAATTTAATTATTCTT
ATTTTTGTAATCAGTCATTGGCTTCTTATCTGGATGAAGGCTTTTGGAGGAGAACCAAAACGACAAGTTCCAAGAAGAAGATGAAGCTCC
GCCTCCGCCGCTTAGTCCCAACCCTGCCCAGGAAGAAGGGCCCGTGGGGCTTTGCCTGTGCCCGTCCACCAAAGGCTGTCATGTGTCTCG
AAATCAGCAGCCCTCCCCATCCCAATCCCAGGCAGCTTGTGTGTACAATCAGCTTCTCTAGCAACTCTGTATCTGTTGGCTTCAAGAGAA
TATTTTGCCTCCACATATGTACCCCTTCTCCTTTTTTTAAAGATGGATTTAAACCAAGATGCCTCCAGGAAAGAGGACGAAATGAGTATA
TTCACAGAGGAATCCAAAAAATACAGTTTGGGGGAAAATGCAATAATTTTTGATGAGATGGGTGAAGGACAAGAAGTGAGTTGTGTCAAT
TATTGTAGATACAATTTTCTGATTAAATCTGGAAAAATAAAAGGCAGCCTGTTTTTTCTGCTTTTATTGTATTAACAGCTGAGGTAGCTA
AAGTTATTTAAAATAAAATTAAATTTATGATCCAAGTAGCTTATTTTTCCCTTTAAATCTCATTGTAAATATATTTGATTTCTTGTAGAA
ATTGATTTCCTTCTGTTTAATTTTATGCTTTTATTATACTCTTGATTTTTCTAAATTTGTGTGTGAAATATAACATTGATTGAATTGCAG
TTACATTTGGTTAGTAATATTTCATTATTTTAATAACTGTGATGTCATGTATGGATTTACTTTGGGGTTCAAATCAAAATGTCACTGCCA
GAAAGAGCTGTTCCAGCTGATCTAGAGCATACTGCCCTAGAGTGTCCCTGGGATCATCTGAACAGAAGTGCACAGGCTACTTGTACAGAG
AAAAAATTAATACTCAAAGGAAATCTTCATTTTTTAGATTGACTTTGGGAATTTGAATTTTCATCAGTGCAAATATAAATTTCTCTATCC
TGCTCTGAGGCTAATTGGTACCATATTTTCCCTTTGTGTCTTGTGACTCTGCCACATCCCATCTCATCCTGGCCTCTGAGTCAAGAACCC
AGTGAACTGACTTTCTAGTTCTAGAAGTTCCGCTGCAAGGCCAGGAAAGCTTGAGAAAGGTATTGTGGAAGAAGCAAAGGTAGACCCCCA
TCACTCACCTTTGTCTGCATCCCTGGGCCTGTGAATGATGACAGCACCTGACATTCTGCACCAGCTACCTCTGCCTCCATGGCAGAGAAA
AGGCCATAAGAACAGTGGAAGAGGAGCATGGACTCAGACTTCAAGGAAGAAGCCATTTCCCCAGGTCCTTCCTTCTGCATCTCACCACCC
CTAGTTACAAATAACTCCATTGAACAGCATCTATTCAGAAACTATGCCGAATAAAAAGATTGGTGGAAGGGCTCATGTGGTTAGCAACTA
TGAAACAGAAATAGGACACTCAGTTACAAACATTATCTCCTTTAGTTTTTCAGAAAATGCATCCCTGATTTCATTCATTTCCAGCTTGAA
AGCCAGCCATATTACTCTAGTCCCTACCAAACTGCTCTAGAAGGTCATTTCCATTTTGTTTGTGATATTTAGACGCGCAGACTTCAGGAA
GTTCACCTTTAACTTCAGCATTCCAGATGAAGTTTCCTGACTCAGTGCTTTTGCATAAGGAACTAGAAAAAAAAAGTAAGGAAAATTGGA
GATGCTAACATCCTCCCCCATCCCAACTGCACCTTAAAATATGCATGTCACCTTCAAGGTTTTATAATTGCACTGTTTGTTTTATGTATG
TACAGATTAAAATTATTGCTACATTTGAGGAAAATAAAATTGCTTGCTTCTATGTAATTCCTGTCATTCCACAGGAAATTCACTTTTCCA
GCTACTGAATAGAATTTGTTTAACAACCTCATGGGTTGCCTCTTCATTTACAGGGAAGAAATGAAATGTACATCTGCAGAAATTGCCAAA

>In-frame_ENST00000392069_ENST00000406961_AY633656_PAX3_chr2_223085940_-_NCOA1_chr2_24949456_length(amino acids)=894AA_start in transcript=366_stop in transcript=3050
MTTLAGAVPRMMRPGPGQNYPRSGFPLEVSTPLGQGRVNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILCRY
QETGSIRPGAIGGSKPKQVTTPDVEKKIEEYKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSSISRILRSKFGKGEEEEADLERKEAEES
EKKAKHSIDGILSERASAPQSDEGSDIDSEPDLPLKRKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNR
RARWRKQAGANQLMAFNHLIPGGFPPTAMPTLPTYQLSETSYQPTSIPQGLPELELEAIDNQFGQPGTGDQIPWTNNTVTAINQSKSEDQ
CISSQLDELLCPPTTVEGRNDEKALLEQLVSFLSGKDETELAELDRALGIDKLVQGGGLDVLSERFPPQQATPPLIMEERPNLYSQPYSS
PSPTANLPSPFQGMVRQKPSLGTMPVQVTPPRGAFSPGMGMQPRQTLNRPPAAPNQLRLQLQQRLQGQQQLIHQNRQAILNQFAATAPVG
INMRSGMQQQITPQPPLNAQMLAQRQRELYSQQHRQRQLIQQQRAMLMRQQSFGNNLPPSSGLPVQMGNPRLPQGAPQQFPYPPNYGTNP
GTPPASTSPFSQLAANPEASLANRNSMVSRGMTGNIGGQFGTGINPQMQQNVFQYPGAGMVPQGEANFAPSLSPGSSMVPMPIPPPQSSL
LQQTPPASGYQSPDMKAWQQGAIGNNNVFSQAVQNQPTPAQPGVYNNMSITVSMAGGNTNVQNMNPMMAQMQMSSLQMPGMNTVCPEQIN

--------------------------------------------------------------
>In-frame_ENST00000344493_ENST00000406961_AY633656_PAX3_chr2_223085940_-_NCOA1_chr2_24949456_length(transcript)=5377nt_BP=1339nt
ACTCGGTGTCACCACAGGAGGAGACTCAGGCAGGCCGCGCTCCAGCCTCACCAGGCTCCCCGGCTCGCCGTGGCTCTCTGAGCCCCCTTT
TCAGGGACCCCAGTCGCTGGAACATTTGCCCAGACTCGTACCAAACTTTTCCGCCCTGGGCTCGGGATCCTGGACTCCGGGGCCTCCCCG
TCCTCCCCTTTCCCGGGTTCCAGCTCCGGCCTCTGGACTAGGAACCGACAGCCCCCCTCCCCGCGTCCCTCCCTCTCTCTCCAGCCGTTT
TGGGGAGGGGCTCTCCACGCTCCGGATAGTTCCCGAGGGTCATCCGCGCCGCACTCGCCTTTCCGTTTCGCCTTCACCTGGATATAATTT
CCGAGCGAAGCTGCCCCCAGGATGACCACGCTGGCCGGCGCTGTGCCCAGGATGATGCGGCCGGGCCCGGGGCAGAACTACCCGCGTAGC
GGGTTCCCGCTGGAAGTGTCCACTCCCCTCGGCCAGGGCCGCGTCAACCAGCTCGGCGGTGTTTTTATCAACGGCAGGCCGCTGCCCAAC
CACATCCGCCACAAGATCGTGGAGATGGCCCACCACGGCATCCGGCCCTGCGTCATCTCGCGCCAGCTGCGCGTGTCCCACGGCTGCGTC
TCCAAGATCCTGTGCAGGTACCAGGAGACTGGCTCCATACGTCCTGGTGCCATCGGCGGCAGCAAGCCCAAGCAGGTGACAACGCCTGAC
GTGGAGAAGAAAATTGAGGAATACAAAAGAGAGAACCCGGGCATGTTCAGCTGGGAAATCCGAGACAAATTACTCAAGGACGCGGTCTGT
GATCGAAACACCGTGCCGTCAGTGAGTTCCATCAGCCGCATCCTGAGAAGTAAATTCGGGAAAGGTGAAGAGGAGGAGGCCGACTTGGAG
AGGAAGGAGGCAGAGGAAAGCGAGAAGAAGGCCAAACACAGCATCGACGGCATCCTGAGCGAGCGAGCCTCAGCACCCCAATCAGATGAA
GGCTCTGATATTGACTCTGAACCAGATTTACCACTAAAGAGGAAACAGCGCAGAAGCCGAACCACCTTCACAGCAGAACAGCTGGAGGAA
CTGGAGCGTGCTTTTGAGAGAACTCATTACCCTGACATTTATACTAGGGAGGAACTGGCCCAGAGGGCGAAGCTCACCGAGGCCCGAGTA
CAGGTCTGGTTTAGCAACCGCCGTGCAAGATGGAGGAAGCAAGCTGGGGCCAATCAACTGATGGCTTTCAACCATCTCATTCCCGGGGGG
TTCCCTCCCACTGCCATGCCGACCTTGCCAACGTACCAGCTGTCGGAGACCTCTTACCAGCCCACATCTATTCCACAAGGATTACCTGAG
CTGGAATTGGAAGCAATTGATAACCAATTTGGACAACCAGGAACAGGCGATCAGATTCCATGGACAAATAATACAGTGACAGCTATAAAT
CAGAGTAAATCAGAAGACCAGTGTATTAGCTCACAATTAGATGAGCTTCTCTGTCCACCCACAACAGTAGAAGGGAGAAATGATGAGAAG
GCTCTTCTTGAACAGCTGGTATCCTTCCTTAGTGGCAAAGATGAAACTGAGCTAGCTGAACTAGACAGAGCTCTGGGAATTGACAAACTT
GTTCAGGGGGGTGGATTAGATGTATTATCAGAGAGATTTCCACCACAACAAGCAACGCCACCTTTGATCATGGAAGAAAGACCCAACCTT
TATTCCCAGCCTTACTCTTCTCCTTCTCCTACTGCCAATCTCCCTAGCCCTTTCCAAGGCATGGTCAGGCAAAAACCTTCACTGGGGACG
ATGCCTGTTCAAGTAACACCTCCCCGAGGTGCTTTTTCACCTGGCATGGGCATGCAGCCCAGGCAAACTCTAAACAGACCTCCGGCTGCA
CCTAACCAGCTTCGACTTCAACTACAGCAGCGATTACAGGGACAACAGCAGTTGATACACCAAAATCGGCAAGCTATCTTAAACCAGTTT
GCAGCAACTGCTCCTGTTGGCATCAATATGAGATCAGGCATGCAACAGCAAATTACACCTCAGCCACCCCTGAATGCTCAAATGTTGGCA
CAACGTCAGCGGGAACTGTACAGTCAACAGCACCGACAGAGGCAGCTAATACAGCAGCAAAGAGCCATGCTTATGAGGCAGCAAAGCTTT
GGGAACAACCTCCCTCCCTCATCTGGACTACCAGTTCAAATGGGGAACCCCCGTCTTCCTCAGGGTGCTCCACAGCAATTCCCCTATCCA
CCAAACTATGGTACAAATCCAGGAACCCCACCTGCTTCTACCAGCCCGTTTTCACAACTAGCAGCAAATCCTGAAGCATCCTTGGCCAAC
CGCAACAGCATGGTGAGCAGAGGCATGACAGGAAACATAGGAGGACAGTTTGGCACTGGAATCAATCCTCAGATGCAGCAGAATGTCTTC
CAGTATCCAGGAGCAGGAATGGTTCCCCAAGGTGAGGCCAACTTTGCTCCATCTCTAAGCCCTGGGAGCTCCATGGTGCCGATGCCAATC
CCTCCTCCTCAGAGTTCTCTTCTCCAGCAAACTCCACCTGCCTCCGGGTATCAGTCACCAGACATGAAGGCCTGGCAGCAAGGAGCGATA
GGAAACAACAATGTGTTCAGTCAAGCTGTCCAGAACCAGCCCACGCCTGCACAGCCAGGAGTATACAACAACATGAGCATCACCGTTTCC
ATGGCAGGTGGAAATACGAATGTTCAGAACATGAACCCAATGATGGCCCAGATGCAGATGAGCTCTTTGCAGATGCCAGGAATGAACACT
GTGTGCCCTGAGCAGATAAATGATCCCGCACTGAGACACACAGGCCTCTACTGCAACCAGCTCTCATCCACTGACCTTCTCAAAACAGAA
GCAGATGGAACCCAGCAGGTGCAACAGGTTCAGGTGTTTGCTGACGTCCAGTGTACAGTGAATCTGGTAGGCGGGGACCCTTACCTGAAC
CAGCCTGGTCCACTGGGAACTCAAAAGCCCACGTCAGGACCACAGACCCCCCAGGCCCAGCAGAAGAGCCTCCTTCAGCAGCTACTGACT
GAATAACCACTTTTAAAGGAATGTGAAATTTAAATAATAGACATACAGAGATATACAAATATATTATATATTTTTCTGAGATTTTTGATA
TCTCAATCTGCAGCCATTCTTCAGGTCGTAGCATTTGGAGCAAAAAAAAAAAAAAAAAAAAAAAAAGGAGTTTGCTTTTGTCGGGAGATT
GAAAGATGTTTTTGTTTCTTTCTTTGTAAAGGCCTTGGATATTGAAAAAATACCAAGGCAGAACAGTTGGACAATCTATTTCTTGAGCCA
AATTTAATTATTCTTATTTTTGTAATCAGTCATTGGCTTCTTATCTGGATGAAGGCTTTTGGAGGAGAACCAAAACGACAAGTTCCAAGA
AGAAGATGAAGCTCCGCCTCCGCCGCTTAGTCCCAACCCTGCCCAGGAAGAAGGGCCCGTGGGGCTTTGCCTGTGCCCGTCCACCAAAGG
CTGTCATGTGTCTCGAAATCAGCAGCCCTCCCCATCCCAATCCCAGGCAGCTTGTGTGTACAATCAGCTTCTCTAGCAACTCTGTATCTG
TTGGCTTCAAGAGAATATTTTGCCTCCACATATGTACCCCTTCTCCTTTTTTTAAAGATGGATTTAAACCAAGATGCCTCCAGGAAAGAG
GACGAAATGAGTATATTCACAGAGGAATCCAAAAAATACAGTTTGGGGGAAAATGCAATAATTTTTGATGAGATGGGTGAAGGACAAGAA
GTGAGTTGTGTCAATTATTGTAGATACAATTTTCTGATTAAATCTGGAAAAATAAAAGGCAGCCTGTTTTTTCTGCTTTTATTGTATTAA
CAGCTGAGGTAGCTAAAGTTATTTAAAATAAAATTAAATTTATGATCCAAGTAGCTTATTTTTCCCTTTAAATCTCATTGTAAATATATT
TGATTTCTTGTAGAAATTGATTTCCTTCTGTTTAATTTTATGCTTTTATTATACTCTTGATTTTTCTAAATTTGTGTGTGAAATATAACA
TTGATTGAATTGCAGTTACATTTGGTTAGTAATATTTCATTATTTTAATAACTGTGATGTCATGTATGGATTTACTTTGGGGTTCAAATC
AAAATGTCACTGCCAGAAAGAGCTGTTCCAGCTGATCTAGAGCATACTGCCCTAGAGTGTCCCTGGGATCATCTGAACAGAAGTGCACAG
GCTACTTGTACAGAGAAAAAATTAATACTCAAAGGAAATCTTCATTTTTTAGATTGACTTTGGGAATTTGAATTTTCATCAGTGCAAATA
TAAATTTCTCTATCCTGCTCTGAGGCTAATTGGTACCATATTTTCCCTTTGTGTCTTGTGACTCTGCCACATCCCATCTCATCCTGGCCT
CTGAGTCAAGAACCCAGTGAACTGACTTTCTAGTTCTAGAAGTTCCGCTGCAAGGCCAGGAAAGCTTGAGAAAGGTATTGTGGAAGAAGC
AAAGGTAGACCCCCATCACTCACCTTTGTCTGCATCCCTGGGCCTGTGAATGATGACAGCACCTGACATTCTGCACCAGCTACCTCTGCC
TCCATGGCAGAGAAAAGGCCATAAGAACAGTGGAAGAGGAGCATGGACTCAGACTTCAAGGAAGAAGCCATTTCCCCAGGTCCTTCCTTC
TGCATCTCACCACCCCTAGTTACAAATAACTCCATTGAACAGCATCTATTCAGAAACTATGCCGAATAAAAAGATTGGTGGAAGGGCTCA
TGTGGTTAGCAACTATGAAACAGAAATAGGACACTCAGTTACAAACATTATCTCCTTTAGTTTTTCAGAAAATGCATCCCTGATTTCATT
CATTTCCAGCTTGAAAGCCAGCCATATTACTCTAGTCCCTACCAAACTGCTCTAGAAGGTCATTTCCATTTTGTTTGTGATATTTAGACG
CGCAGACTTCAGGAAGTTCACCTTTAACTTCAGCATTCCAGATGAAGTTTCCTGACTCAGTGCTTTTGCATAAGGAACTAGAAAAAAAAA
GTAAGGAAAATTGGAGATGCTAACATCCTCCCCCATCCCAACTGCACCTTAAAATATGCATGTCACCTTCAAGGTTTTATAATTGCACTG
TTTGTTTTATGTATGTACAGATTAAAATTATTGCTACATTTGAGGAAAATAAAATTGCTTGCTTCTATGTAATTCCTGTCATTCCACAGG
AAATTCACTTTTCCAGCTACTGAATAGAATTTGTTTAACAACCTCATGGGTTGCCTCTTCATTTACAGGGAAGAAATGAAATGTACATCT

>In-frame_ENST00000344493_ENST00000406961_AY633656_PAX3_chr2_223085940_-_NCOA1_chr2_24949456_length(amino acids)=894AA_start in transcript=381_stop in transcript=3065
MTTLAGAVPRMMRPGPGQNYPRSGFPLEVSTPLGQGRVNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILCRY
QETGSIRPGAIGGSKPKQVTTPDVEKKIEEYKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSSISRILRSKFGKGEEEEADLERKEAEES
EKKAKHSIDGILSERASAPQSDEGSDIDSEPDLPLKRKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNR
RARWRKQAGANQLMAFNHLIPGGFPPTAMPTLPTYQLSETSYQPTSIPQGLPELELEAIDNQFGQPGTGDQIPWTNNTVTAINQSKSEDQ
CISSQLDELLCPPTTVEGRNDEKALLEQLVSFLSGKDETELAELDRALGIDKLVQGGGLDVLSERFPPQQATPPLIMEERPNLYSQPYSS
PSPTANLPSPFQGMVRQKPSLGTMPVQVTPPRGAFSPGMGMQPRQTLNRPPAAPNQLRLQLQQRLQGQQQLIHQNRQAILNQFAATAPVG
INMRSGMQQQITPQPPLNAQMLAQRQRELYSQQHRQRQLIQQQRAMLMRQQSFGNNLPPSSGLPVQMGNPRLPQGAPQQFPYPPNYGTNP
GTPPASTSPFSQLAANPEASLANRNSMVSRGMTGNIGGQFGTGINPQMQQNVFQYPGAGMVPQGEANFAPSLSPGSSMVPMPIPPPQSSL
LQQTPPASGYQSPDMKAWQQGAIGNNNVFSQAVQNQPTPAQPGVYNNMSITVSMAGGNTNVQNMNPMMAQMQMSSLQMPGMNTVCPEQIN

--------------------------------------------------------------
>In-frame_ENST00000350526_ENST00000406961_AY633656_PAX3_chr2_223085940_-_NCOA1_chr2_24949456_length(transcript)=5133nt_BP=1095nt
GTCCCTCCCTCTCTCTCCAGCCGTTTTGGGGAGGGGCTCTCCACGCTCCGGATAGTTCCCGAGGGTCATCCGCGCCGCACTCGCCTTTCC
GTTTCGCCTTCACCTGGATATAATTTCCGAGCGAAGCTGCCCCCAGGATGACCACGCTGGCCGGCGCTGTGCCCAGGATGATGCGGCCGG
GCCCGGGGCAGAACTACCCGCGTAGCGGGTTCCCGCTGGAAGTGTCCACTCCCCTCGGCCAGGGCCGCGTCAACCAGCTCGGCGGTGTTT
TTATCAACGGCAGGCCGCTGCCCAACCACATCCGCCACAAGATCGTGGAGATGGCCCACCACGGCATCCGGCCCTGCGTCATCTCGCGCC
AGCTGCGCGTGTCCCACGGCTGCGTCTCCAAGATCCTGTGCAGGTACCAGGAGACTGGCTCCATACGTCCTGGTGCCATCGGCGGCAGCA
AGCCCAAGCAGGTGACAACGCCTGACGTGGAGAAGAAAATTGAGGAATACAAAAGAGAGAACCCGGGCATGTTCAGCTGGGAAATCCGAG
ACAAATTACTCAAGGACGCGGTCTGTGATCGAAACACCGTGCCGTCAGTGAGTTCCATCAGCCGCATCCTGAGAAGTAAATTCGGGAAAG
GTGAAGAGGAGGAGGCCGACTTGGAGAGGAAGGAGGCAGAGGAAAGCGAGAAGAAGGCCAAACACAGCATCGACGGCATCCTGAGCGAGC
GAGCCTCAGCACCCCAATCAGATGAAGGCTCTGATATTGACTCTGAACCAGATTTACCACTAAAGAGGAAACAGCGCAGAAGCCGAACCA
CCTTCACAGCAGAACAGCTGGAGGAACTGGAGCGTGCTTTTGAGAGAACTCATTACCCTGACATTTATACTAGGGAGGAACTGGCCCAGA
GGGCGAAGCTCACCGAGGCCCGAGTACAGGTCTGGTTTAGCAACCGCCGTGCAAGATGGAGGAAGCAAGCTGGGGCCAATCAACTGATGG
CTTTCAACCATCTCATTCCCGGGGGGTTCCCTCCCACTGCCATGCCGACCTTGCCAACGTACCAGCTGTCGGAGACCTCTTACCAGCCCA
CATCTATTCCACAAGGATTACCTGAGCTGGAATTGGAAGCAATTGATAACCAATTTGGACAACCAGGAACAGGCGATCAGATTCCATGGA
CAAATAATACAGTGACAGCTATAAATCAGAGTAAATCAGAAGACCAGTGTATTAGCTCACAATTAGATGAGCTTCTCTGTCCACCCACAA
CAGTAGAAGGGAGAAATGATGAGAAGGCTCTTCTTGAACAGCTGGTATCCTTCCTTAGTGGCAAAGATGAAACTGAGCTAGCTGAACTAG
ACAGAGCTCTGGGAATTGACAAACTTGTTCAGGGGGGTGGATTAGATGTATTATCAGAGAGATTTCCACCACAACAAGCAACGCCACCTT
TGATCATGGAAGAAAGACCCAACCTTTATTCCCAGCCTTACTCTTCTCCTTCTCCTACTGCCAATCTCCCTAGCCCTTTCCAAGGCATGG
TCAGGCAAAAACCTTCACTGGGGACGATGCCTGTTCAAGTAACACCTCCCCGAGGTGCTTTTTCACCTGGCATGGGCATGCAGCCCAGGC
AAACTCTAAACAGACCTCCGGCTGCACCTAACCAGCTTCGACTTCAACTACAGCAGCGATTACAGGGACAACAGCAGTTGATACACCAAA
ATCGGCAAGCTATCTTAAACCAGTTTGCAGCAACTGCTCCTGTTGGCATCAATATGAGATCAGGCATGCAACAGCAAATTACACCTCAGC
CACCCCTGAATGCTCAAATGTTGGCACAACGTCAGCGGGAACTGTACAGTCAACAGCACCGACAGAGGCAGCTAATACAGCAGCAAAGAG
CCATGCTTATGAGGCAGCAAAGCTTTGGGAACAACCTCCCTCCCTCATCTGGACTACCAGTTCAAATGGGGAACCCCCGTCTTCCTCAGG
GTGCTCCACAGCAATTCCCCTATCCACCAAACTATGGTACAAATCCAGGAACCCCACCTGCTTCTACCAGCCCGTTTTCACAACTAGCAG
CAAATCCTGAAGCATCCTTGGCCAACCGCAACAGCATGGTGAGCAGAGGCATGACAGGAAACATAGGAGGACAGTTTGGCACTGGAATCA
ATCCTCAGATGCAGCAGAATGTCTTCCAGTATCCAGGAGCAGGAATGGTTCCCCAAGGTGAGGCCAACTTTGCTCCATCTCTAAGCCCTG
GGAGCTCCATGGTGCCGATGCCAATCCCTCCTCCTCAGAGTTCTCTTCTCCAGCAAACTCCACCTGCCTCCGGGTATCAGTCACCAGACA
TGAAGGCCTGGCAGCAAGGAGCGATAGGAAACAACAATGTGTTCAGTCAAGCTGTCCAGAACCAGCCCACGCCTGCACAGCCAGGAGTAT
ACAACAACATGAGCATCACCGTTTCCATGGCAGGTGGAAATACGAATGTTCAGAACATGAACCCAATGATGGCCCAGATGCAGATGAGCT
CTTTGCAGATGCCAGGAATGAACACTGTGTGCCCTGAGCAGATAAATGATCCCGCACTGAGACACACAGGCCTCTACTGCAACCAGCTCT
CATCCACTGACCTTCTCAAAACAGAAGCAGATGGAACCCAGCAGGTGCAACAGGTTCAGGTGTTTGCTGACGTCCAGTGTACAGTGAATC
TGGTAGGCGGGGACCCTTACCTGAACCAGCCTGGTCCACTGGGAACTCAAAAGCCCACGTCAGGACCACAGACCCCCCAGGCCCAGCAGA
AGAGCCTCCTTCAGCAGCTACTGACTGAATAACCACTTTTAAAGGAATGTGAAATTTAAATAATAGACATACAGAGATATACAAATATAT
TATATATTTTTCTGAGATTTTTGATATCTCAATCTGCAGCCATTCTTCAGGTCGTAGCATTTGGAGCAAAAAAAAAAAAAAAAAAAAAAA
AAGGAGTTTGCTTTTGTCGGGAGATTGAAAGATGTTTTTGTTTCTTTCTTTGTAAAGGCCTTGGATATTGAAAAAATACCAAGGCAGAAC
AGTTGGACAATCTATTTCTTGAGCCAAATTTAATTATTCTTATTTTTGTAATCAGTCATTGGCTTCTTATCTGGATGAAGGCTTTTGGAG
GAGAACCAAAACGACAAGTTCCAAGAAGAAGATGAAGCTCCGCCTCCGCCGCTTAGTCCCAACCCTGCCCAGGAAGAAGGGCCCGTGGGG
CTTTGCCTGTGCCCGTCCACCAAAGGCTGTCATGTGTCTCGAAATCAGCAGCCCTCCCCATCCCAATCCCAGGCAGCTTGTGTGTACAAT
CAGCTTCTCTAGCAACTCTGTATCTGTTGGCTTCAAGAGAATATTTTGCCTCCACATATGTACCCCTTCTCCTTTTTTTAAAGATGGATT
TAAACCAAGATGCCTCCAGGAAAGAGGACGAAATGAGTATATTCACAGAGGAATCCAAAAAATACAGTTTGGGGGAAAATGCAATAATTT
TTGATGAGATGGGTGAAGGACAAGAAGTGAGTTGTGTCAATTATTGTAGATACAATTTTCTGATTAAATCTGGAAAAATAAAAGGCAGCC
TGTTTTTTCTGCTTTTATTGTATTAACAGCTGAGGTAGCTAAAGTTATTTAAAATAAAATTAAATTTATGATCCAAGTAGCTTATTTTTC
CCTTTAAATCTCATTGTAAATATATTTGATTTCTTGTAGAAATTGATTTCCTTCTGTTTAATTTTATGCTTTTATTATACTCTTGATTTT
TCTAAATTTGTGTGTGAAATATAACATTGATTGAATTGCAGTTACATTTGGTTAGTAATATTTCATTATTTTAATAACTGTGATGTCATG
TATGGATTTACTTTGGGGTTCAAATCAAAATGTCACTGCCAGAAAGAGCTGTTCCAGCTGATCTAGAGCATACTGCCCTAGAGTGTCCCT
GGGATCATCTGAACAGAAGTGCACAGGCTACTTGTACAGAGAAAAAATTAATACTCAAAGGAAATCTTCATTTTTTAGATTGACTTTGGG
AATTTGAATTTTCATCAGTGCAAATATAAATTTCTCTATCCTGCTCTGAGGCTAATTGGTACCATATTTTCCCTTTGTGTCTTGTGACTC
TGCCACATCCCATCTCATCCTGGCCTCTGAGTCAAGAACCCAGTGAACTGACTTTCTAGTTCTAGAAGTTCCGCTGCAAGGCCAGGAAAG
CTTGAGAAAGGTATTGTGGAAGAAGCAAAGGTAGACCCCCATCACTCACCTTTGTCTGCATCCCTGGGCCTGTGAATGATGACAGCACCT
GACATTCTGCACCAGCTACCTCTGCCTCCATGGCAGAGAAAAGGCCATAAGAACAGTGGAAGAGGAGCATGGACTCAGACTTCAAGGAAG
AAGCCATTTCCCCAGGTCCTTCCTTCTGCATCTCACCACCCCTAGTTACAAATAACTCCATTGAACAGCATCTATTCAGAAACTATGCCG
AATAAAAAGATTGGTGGAAGGGCTCATGTGGTTAGCAACTATGAAACAGAAATAGGACACTCAGTTACAAACATTATCTCCTTTAGTTTT
TCAGAAAATGCATCCCTGATTTCATTCATTTCCAGCTTGAAAGCCAGCCATATTACTCTAGTCCCTACCAAACTGCTCTAGAAGGTCATT
TCCATTTTGTTTGTGATATTTAGACGCGCAGACTTCAGGAAGTTCACCTTTAACTTCAGCATTCCAGATGAAGTTTCCTGACTCAGTGCT
TTTGCATAAGGAACTAGAAAAAAAAAGTAAGGAAAATTGGAGATGCTAACATCCTCCCCCATCCCAACTGCACCTTAAAATATGCATGTC
ACCTTCAAGGTTTTATAATTGCACTGTTTGTTTTATGTATGTACAGATTAAAATTATTGCTACATTTGAGGAAAATAAAATTGCTTGCTT
CTATGTAATTCCTGTCATTCCACAGGAAATTCACTTTTCCAGCTACTGAATAGAATTTGTTTAACAACCTCATGGGTTGCCTCTTCATTT
ACAGGGAAGAAATGAAATGTACATCTGCAGAAATTGCCAAAGCCCAAATTAACGAGTATTATAAAAGGATAATAAAGCATCCCTGAAGCC

>In-frame_ENST00000350526_ENST00000406961_AY633656_PAX3_chr2_223085940_-_NCOA1_chr2_24949456_length(amino acids)=894AA_start in transcript=137_stop in transcript=2821
MTTLAGAVPRMMRPGPGQNYPRSGFPLEVSTPLGQGRVNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILCRY
QETGSIRPGAIGGSKPKQVTTPDVEKKIEEYKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSSISRILRSKFGKGEEEEADLERKEAEES
EKKAKHSIDGILSERASAPQSDEGSDIDSEPDLPLKRKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNR
RARWRKQAGANQLMAFNHLIPGGFPPTAMPTLPTYQLSETSYQPTSIPQGLPELELEAIDNQFGQPGTGDQIPWTNNTVTAINQSKSEDQ
CISSQLDELLCPPTTVEGRNDEKALLEQLVSFLSGKDETELAELDRALGIDKLVQGGGLDVLSERFPPQQATPPLIMEERPNLYSQPYSS
PSPTANLPSPFQGMVRQKPSLGTMPVQVTPPRGAFSPGMGMQPRQTLNRPPAAPNQLRLQLQQRLQGQQQLIHQNRQAILNQFAATAPVG
INMRSGMQQQITPQPPLNAQMLAQRQRELYSQQHRQRQLIQQQRAMLMRQQSFGNNLPPSSGLPVQMGNPRLPQGAPQQFPYPPNYGTNP
GTPPASTSPFSQLAANPEASLANRNSMVSRGMTGNIGGQFGTGINPQMQQNVFQYPGAGMVPQGEANFAPSLSPGSSMVPMPIPPPQSSL
LQQTPPASGYQSPDMKAWQQGAIGNNNVFSQAVQNQPTPAQPGVYNNMSITVSMAGGNTNVQNMNPMMAQMQMSSLQMPGMNTVCPEQIN

--------------------------------------------------------------
>In-frame_ENST00000336840_ENST00000406961_AY633656_PAX3_chr2_223085940_-_NCOA1_chr2_24949456_length(transcript)=5377nt_BP=1339nt
ACTCGGTGTCACCACAGGAGGAGACTCAGGCAGGCCGCGCTCCAGCCTCACCAGGCTCCCCGGCTCGCCGTGGCTCTCTGAGCCCCCTTT
TCAGGGACCCCAGTCGCTGGAACATTTGCCCAGACTCGTACCAAACTTTTCCGCCCTGGGCTCGGGATCCTGGACTCCGGGGCCTCCCCG
TCCTCCCCTTTCCCGGGTTCCAGCTCCGGCCTCTGGACTAGGAACCGACAGCCCCCCTCCCCGCGTCCCTCCCTCTCTCTCCAGCCGTTT
TGGGGAGGGGCTCTCCACGCTCCGGATAGTTCCCGAGGGTCATCCGCGCCGCACTCGCCTTTCCGTTTCGCCTTCACCTGGATATAATTT
CCGAGCGAAGCTGCCCCCAGGATGACCACGCTGGCCGGCGCTGTGCCCAGGATGATGCGGCCGGGCCCGGGGCAGAACTACCCGCGTAGC
GGGTTCCCGCTGGAAGTGTCCACTCCCCTCGGCCAGGGCCGCGTCAACCAGCTCGGCGGTGTTTTTATCAACGGCAGGCCGCTGCCCAAC
CACATCCGCCACAAGATCGTGGAGATGGCCCACCACGGCATCCGGCCCTGCGTCATCTCGCGCCAGCTGCGCGTGTCCCACGGCTGCGTC
TCCAAGATCCTGTGCAGGTACCAGGAGACTGGCTCCATACGTCCTGGTGCCATCGGCGGCAGCAAGCCCAAGCAGGTGACAACGCCTGAC
GTGGAGAAGAAAATTGAGGAATACAAAAGAGAGAACCCGGGCATGTTCAGCTGGGAAATCCGAGACAAATTACTCAAGGACGCGGTCTGT
GATCGAAACACCGTGCCGTCAGTGAGTTCCATCAGCCGCATCCTGAGAAGTAAATTCGGGAAAGGTGAAGAGGAGGAGGCCGACTTGGAG
AGGAAGGAGGCAGAGGAAAGCGAGAAGAAGGCCAAACACAGCATCGACGGCATCCTGAGCGAGCGAGCCTCAGCACCCCAATCAGATGAA
GGCTCTGATATTGACTCTGAACCAGATTTACCACTAAAGAGGAAACAGCGCAGAAGCCGAACCACCTTCACAGCAGAACAGCTGGAGGAA
CTGGAGCGTGCTTTTGAGAGAACTCATTACCCTGACATTTATACTAGGGAGGAACTGGCCCAGAGGGCGAAGCTCACCGAGGCCCGAGTA
CAGGTCTGGTTTAGCAACCGCCGTGCAAGATGGAGGAAGCAAGCTGGGGCCAATCAACTGATGGCTTTCAACCATCTCATTCCCGGGGGG
TTCCCTCCCACTGCCATGCCGACCTTGCCAACGTACCAGCTGTCGGAGACCTCTTACCAGCCCACATCTATTCCACAAGGATTACCTGAG
CTGGAATTGGAAGCAATTGATAACCAATTTGGACAACCAGGAACAGGCGATCAGATTCCATGGACAAATAATACAGTGACAGCTATAAAT
CAGAGTAAATCAGAAGACCAGTGTATTAGCTCACAATTAGATGAGCTTCTCTGTCCACCCACAACAGTAGAAGGGAGAAATGATGAGAAG
GCTCTTCTTGAACAGCTGGTATCCTTCCTTAGTGGCAAAGATGAAACTGAGCTAGCTGAACTAGACAGAGCTCTGGGAATTGACAAACTT
GTTCAGGGGGGTGGATTAGATGTATTATCAGAGAGATTTCCACCACAACAAGCAACGCCACCTTTGATCATGGAAGAAAGACCCAACCTT
TATTCCCAGCCTTACTCTTCTCCTTCTCCTACTGCCAATCTCCCTAGCCCTTTCCAAGGCATGGTCAGGCAAAAACCTTCACTGGGGACG
ATGCCTGTTCAAGTAACACCTCCCCGAGGTGCTTTTTCACCTGGCATGGGCATGCAGCCCAGGCAAACTCTAAACAGACCTCCGGCTGCA
CCTAACCAGCTTCGACTTCAACTACAGCAGCGATTACAGGGACAACAGCAGTTGATACACCAAAATCGGCAAGCTATCTTAAACCAGTTT
GCAGCAACTGCTCCTGTTGGCATCAATATGAGATCAGGCATGCAACAGCAAATTACACCTCAGCCACCCCTGAATGCTCAAATGTTGGCA
CAACGTCAGCGGGAACTGTACAGTCAACAGCACCGACAGAGGCAGCTAATACAGCAGCAAAGAGCCATGCTTATGAGGCAGCAAAGCTTT
GGGAACAACCTCCCTCCCTCATCTGGACTACCAGTTCAAATGGGGAACCCCCGTCTTCCTCAGGGTGCTCCACAGCAATTCCCCTATCCA
CCAAACTATGGTACAAATCCAGGAACCCCACCTGCTTCTACCAGCCCGTTTTCACAACTAGCAGCAAATCCTGAAGCATCCTTGGCCAAC
CGCAACAGCATGGTGAGCAGAGGCATGACAGGAAACATAGGAGGACAGTTTGGCACTGGAATCAATCCTCAGATGCAGCAGAATGTCTTC
CAGTATCCAGGAGCAGGAATGGTTCCCCAAGGTGAGGCCAACTTTGCTCCATCTCTAAGCCCTGGGAGCTCCATGGTGCCGATGCCAATC
CCTCCTCCTCAGAGTTCTCTTCTCCAGCAAACTCCACCTGCCTCCGGGTATCAGTCACCAGACATGAAGGCCTGGCAGCAAGGAGCGATA
GGAAACAACAATGTGTTCAGTCAAGCTGTCCAGAACCAGCCCACGCCTGCACAGCCAGGAGTATACAACAACATGAGCATCACCGTTTCC
ATGGCAGGTGGAAATACGAATGTTCAGAACATGAACCCAATGATGGCCCAGATGCAGATGAGCTCTTTGCAGATGCCAGGAATGAACACT
GTGTGCCCTGAGCAGATAAATGATCCCGCACTGAGACACACAGGCCTCTACTGCAACCAGCTCTCATCCACTGACCTTCTCAAAACAGAA
GCAGATGGAACCCAGCAGGTGCAACAGGTTCAGGTGTTTGCTGACGTCCAGTGTACAGTGAATCTGGTAGGCGGGGACCCTTACCTGAAC
CAGCCTGGTCCACTGGGAACTCAAAAGCCCACGTCAGGACCACAGACCCCCCAGGCCCAGCAGAAGAGCCTCCTTCAGCAGCTACTGACT
GAATAACCACTTTTAAAGGAATGTGAAATTTAAATAATAGACATACAGAGATATACAAATATATTATATATTTTTCTGAGATTTTTGATA
TCTCAATCTGCAGCCATTCTTCAGGTCGTAGCATTTGGAGCAAAAAAAAAAAAAAAAAAAAAAAAAGGAGTTTGCTTTTGTCGGGAGATT
GAAAGATGTTTTTGTTTCTTTCTTTGTAAAGGCCTTGGATATTGAAAAAATACCAAGGCAGAACAGTTGGACAATCTATTTCTTGAGCCA
AATTTAATTATTCTTATTTTTGTAATCAGTCATTGGCTTCTTATCTGGATGAAGGCTTTTGGAGGAGAACCAAAACGACAAGTTCCAAGA
AGAAGATGAAGCTCCGCCTCCGCCGCTTAGTCCCAACCCTGCCCAGGAAGAAGGGCCCGTGGGGCTTTGCCTGTGCCCGTCCACCAAAGG
CTGTCATGTGTCTCGAAATCAGCAGCCCTCCCCATCCCAATCCCAGGCAGCTTGTGTGTACAATCAGCTTCTCTAGCAACTCTGTATCTG
TTGGCTTCAAGAGAATATTTTGCCTCCACATATGTACCCCTTCTCCTTTTTTTAAAGATGGATTTAAACCAAGATGCCTCCAGGAAAGAG
GACGAAATGAGTATATTCACAGAGGAATCCAAAAAATACAGTTTGGGGGAAAATGCAATAATTTTTGATGAGATGGGTGAAGGACAAGAA
GTGAGTTGTGTCAATTATTGTAGATACAATTTTCTGATTAAATCTGGAAAAATAAAAGGCAGCCTGTTTTTTCTGCTTTTATTGTATTAA
CAGCTGAGGTAGCTAAAGTTATTTAAAATAAAATTAAATTTATGATCCAAGTAGCTTATTTTTCCCTTTAAATCTCATTGTAAATATATT
TGATTTCTTGTAGAAATTGATTTCCTTCTGTTTAATTTTATGCTTTTATTATACTCTTGATTTTTCTAAATTTGTGTGTGAAATATAACA
TTGATTGAATTGCAGTTACATTTGGTTAGTAATATTTCATTATTTTAATAACTGTGATGTCATGTATGGATTTACTTTGGGGTTCAAATC
AAAATGTCACTGCCAGAAAGAGCTGTTCCAGCTGATCTAGAGCATACTGCCCTAGAGTGTCCCTGGGATCATCTGAACAGAAGTGCACAG
GCTACTTGTACAGAGAAAAAATTAATACTCAAAGGAAATCTTCATTTTTTAGATTGACTTTGGGAATTTGAATTTTCATCAGTGCAAATA
TAAATTTCTCTATCCTGCTCTGAGGCTAATTGGTACCATATTTTCCCTTTGTGTCTTGTGACTCTGCCACATCCCATCTCATCCTGGCCT
CTGAGTCAAGAACCCAGTGAACTGACTTTCTAGTTCTAGAAGTTCCGCTGCAAGGCCAGGAAAGCTTGAGAAAGGTATTGTGGAAGAAGC
AAAGGTAGACCCCCATCACTCACCTTTGTCTGCATCCCTGGGCCTGTGAATGATGACAGCACCTGACATTCTGCACCAGCTACCTCTGCC
TCCATGGCAGAGAAAAGGCCATAAGAACAGTGGAAGAGGAGCATGGACTCAGACTTCAAGGAAGAAGCCATTTCCCCAGGTCCTTCCTTC
TGCATCTCACCACCCCTAGTTACAAATAACTCCATTGAACAGCATCTATTCAGAAACTATGCCGAATAAAAAGATTGGTGGAAGGGCTCA
TGTGGTTAGCAACTATGAAACAGAAATAGGACACTCAGTTACAAACATTATCTCCTTTAGTTTTTCAGAAAATGCATCCCTGATTTCATT
CATTTCCAGCTTGAAAGCCAGCCATATTACTCTAGTCCCTACCAAACTGCTCTAGAAGGTCATTTCCATTTTGTTTGTGATATTTAGACG
CGCAGACTTCAGGAAGTTCACCTTTAACTTCAGCATTCCAGATGAAGTTTCCTGACTCAGTGCTTTTGCATAAGGAACTAGAAAAAAAAA
GTAAGGAAAATTGGAGATGCTAACATCCTCCCCCATCCCAACTGCACCTTAAAATATGCATGTCACCTTCAAGGTTTTATAATTGCACTG
TTTGTTTTATGTATGTACAGATTAAAATTATTGCTACATTTGAGGAAAATAAAATTGCTTGCTTCTATGTAATTCCTGTCATTCCACAGG
AAATTCACTTTTCCAGCTACTGAATAGAATTTGTTTAACAACCTCATGGGTTGCCTCTTCATTTACAGGGAAGAAATGAAATGTACATCT

>In-frame_ENST00000336840_ENST00000406961_AY633656_PAX3_chr2_223085940_-_NCOA1_chr2_24949456_length(amino acids)=894AA_start in transcript=381_stop in transcript=3065
MTTLAGAVPRMMRPGPGQNYPRSGFPLEVSTPLGQGRVNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILCRY
QETGSIRPGAIGGSKPKQVTTPDVEKKIEEYKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSSISRILRSKFGKGEEEEADLERKEAEES
EKKAKHSIDGILSERASAPQSDEGSDIDSEPDLPLKRKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNR
RARWRKQAGANQLMAFNHLIPGGFPPTAMPTLPTYQLSETSYQPTSIPQGLPELELEAIDNQFGQPGTGDQIPWTNNTVTAINQSKSEDQ
CISSQLDELLCPPTTVEGRNDEKALLEQLVSFLSGKDETELAELDRALGIDKLVQGGGLDVLSERFPPQQATPPLIMEERPNLYSQPYSS
PSPTANLPSPFQGMVRQKPSLGTMPVQVTPPRGAFSPGMGMQPRQTLNRPPAAPNQLRLQLQQRLQGQQQLIHQNRQAILNQFAATAPVG
INMRSGMQQQITPQPPLNAQMLAQRQRELYSQQHRQRQLIQQQRAMLMRQQSFGNNLPPSSGLPVQMGNPRLPQGAPQQFPYPPNYGTNP
GTPPASTSPFSQLAANPEASLANRNSMVSRGMTGNIGGQFGTGINPQMQQNVFQYPGAGMVPQGEANFAPSLSPGSSMVPMPIPPPQSSL
LQQTPPASGYQSPDMKAWQQGAIGNNNVFSQAVQNQPTPAQPGVYNNMSITVSMAGGNTNVQNMNPMMAQMQMSSLQMPGMNTVCPEQIN

--------------------------------------------------------------
>In-frame_ENST00000392070_ENST00000406961_AY633656_PAX3_chr2_223085940_-_NCOA1_chr2_24949456_length(transcript)=5377nt_BP=1339nt
ACTCGGTGTCACCACAGGAGGAGACTCAGGCAGGCCGCGCTCCAGCCTCACCAGGCTCCCCGGCTCGCCGTGGCTCTCTGAGCCCCCTTT
TCAGGGACCCCAGTCGCTGGAACATTTGCCCAGACTCGTACCAAACTTTTCCGCCCTGGGCTCGGGATCCTGGACTCCGGGGCCTCCCCG
TCCTCCCCTTTCCCGGGTTCCAGCTCCGGCCTCTGGACTAGGAACCGACAGCCCCCCTCCCCGCGTCCCTCCCTCTCTCTCCAGCCGTTT
TGGGGAGGGGCTCTCCACGCTCCGGATAGTTCCCGAGGGTCATCCGCGCCGCACTCGCCTTTCCGTTTCGCCTTCACCTGGATATAATTT
CCGAGCGAAGCTGCCCCCAGGATGACCACGCTGGCCGGCGCTGTGCCCAGGATGATGCGGCCGGGCCCGGGGCAGAACTACCCGCGTAGC
GGGTTCCCGCTGGAAGTGTCCACTCCCCTCGGCCAGGGCCGCGTCAACCAGCTCGGCGGTGTTTTTATCAACGGCAGGCCGCTGCCCAAC
CACATCCGCCACAAGATCGTGGAGATGGCCCACCACGGCATCCGGCCCTGCGTCATCTCGCGCCAGCTGCGCGTGTCCCACGGCTGCGTC
TCCAAGATCCTGTGCAGGTACCAGGAGACTGGCTCCATACGTCCTGGTGCCATCGGCGGCAGCAAGCCCAAGCAGGTGACAACGCCTGAC
GTGGAGAAGAAAATTGAGGAATACAAAAGAGAGAACCCGGGCATGTTCAGCTGGGAAATCCGAGACAAATTACTCAAGGACGCGGTCTGT
GATCGAAACACCGTGCCGTCAGTGAGTTCCATCAGCCGCATCCTGAGAAGTAAATTCGGGAAAGGTGAAGAGGAGGAGGCCGACTTGGAG
AGGAAGGAGGCAGAGGAAAGCGAGAAGAAGGCCAAACACAGCATCGACGGCATCCTGAGCGAGCGAGCCTCAGCACCCCAATCAGATGAA
GGCTCTGATATTGACTCTGAACCAGATTTACCACTAAAGAGGAAACAGCGCAGAAGCCGAACCACCTTCACAGCAGAACAGCTGGAGGAA
CTGGAGCGTGCTTTTGAGAGAACTCATTACCCTGACATTTATACTAGGGAGGAACTGGCCCAGAGGGCGAAGCTCACCGAGGCCCGAGTA
CAGGTCTGGTTTAGCAACCGCCGTGCAAGATGGAGGAAGCAAGCTGGGGCCAATCAACTGATGGCTTTCAACCATCTCATTCCCGGGGGG
TTCCCTCCCACTGCCATGCCGACCTTGCCAACGTACCAGCTGTCGGAGACCTCTTACCAGCCCACATCTATTCCACAAGGATTACCTGAG
CTGGAATTGGAAGCAATTGATAACCAATTTGGACAACCAGGAACAGGCGATCAGATTCCATGGACAAATAATACAGTGACAGCTATAAAT
CAGAGTAAATCAGAAGACCAGTGTATTAGCTCACAATTAGATGAGCTTCTCTGTCCACCCACAACAGTAGAAGGGAGAAATGATGAGAAG
GCTCTTCTTGAACAGCTGGTATCCTTCCTTAGTGGCAAAGATGAAACTGAGCTAGCTGAACTAGACAGAGCTCTGGGAATTGACAAACTT
GTTCAGGGGGGTGGATTAGATGTATTATCAGAGAGATTTCCACCACAACAAGCAACGCCACCTTTGATCATGGAAGAAAGACCCAACCTT
TATTCCCAGCCTTACTCTTCTCCTTCTCCTACTGCCAATCTCCCTAGCCCTTTCCAAGGCATGGTCAGGCAAAAACCTTCACTGGGGACG
ATGCCTGTTCAAGTAACACCTCCCCGAGGTGCTTTTTCACCTGGCATGGGCATGCAGCCCAGGCAAACTCTAAACAGACCTCCGGCTGCA
CCTAACCAGCTTCGACTTCAACTACAGCAGCGATTACAGGGACAACAGCAGTTGATACACCAAAATCGGCAAGCTATCTTAAACCAGTTT
GCAGCAACTGCTCCTGTTGGCATCAATATGAGATCAGGCATGCAACAGCAAATTACACCTCAGCCACCCCTGAATGCTCAAATGTTGGCA
CAACGTCAGCGGGAACTGTACAGTCAACAGCACCGACAGAGGCAGCTAATACAGCAGCAAAGAGCCATGCTTATGAGGCAGCAAAGCTTT
GGGAACAACCTCCCTCCCTCATCTGGACTACCAGTTCAAATGGGGAACCCCCGTCTTCCTCAGGGTGCTCCACAGCAATTCCCCTATCCA
CCAAACTATGGTACAAATCCAGGAACCCCACCTGCTTCTACCAGCCCGTTTTCACAACTAGCAGCAAATCCTGAAGCATCCTTGGCCAAC
CGCAACAGCATGGTGAGCAGAGGCATGACAGGAAACATAGGAGGACAGTTTGGCACTGGAATCAATCCTCAGATGCAGCAGAATGTCTTC
CAGTATCCAGGAGCAGGAATGGTTCCCCAAGGTGAGGCCAACTTTGCTCCATCTCTAAGCCCTGGGAGCTCCATGGTGCCGATGCCAATC
CCTCCTCCTCAGAGTTCTCTTCTCCAGCAAACTCCACCTGCCTCCGGGTATCAGTCACCAGACATGAAGGCCTGGCAGCAAGGAGCGATA
GGAAACAACAATGTGTTCAGTCAAGCTGTCCAGAACCAGCCCACGCCTGCACAGCCAGGAGTATACAACAACATGAGCATCACCGTTTCC
ATGGCAGGTGGAAATACGAATGTTCAGAACATGAACCCAATGATGGCCCAGATGCAGATGAGCTCTTTGCAGATGCCAGGAATGAACACT
GTGTGCCCTGAGCAGATAAATGATCCCGCACTGAGACACACAGGCCTCTACTGCAACCAGCTCTCATCCACTGACCTTCTCAAAACAGAA
GCAGATGGAACCCAGCAGGTGCAACAGGTTCAGGTGTTTGCTGACGTCCAGTGTACAGTGAATCTGGTAGGCGGGGACCCTTACCTGAAC
CAGCCTGGTCCACTGGGAACTCAAAAGCCCACGTCAGGACCACAGACCCCCCAGGCCCAGCAGAAGAGCCTCCTTCAGCAGCTACTGACT
GAATAACCACTTTTAAAGGAATGTGAAATTTAAATAATAGACATACAGAGATATACAAATATATTATATATTTTTCTGAGATTTTTGATA
TCTCAATCTGCAGCCATTCTTCAGGTCGTAGCATTTGGAGCAAAAAAAAAAAAAAAAAAAAAAAAAGGAGTTTGCTTTTGTCGGGAGATT
GAAAGATGTTTTTGTTTCTTTCTTTGTAAAGGCCTTGGATATTGAAAAAATACCAAGGCAGAACAGTTGGACAATCTATTTCTTGAGCCA
AATTTAATTATTCTTATTTTTGTAATCAGTCATTGGCTTCTTATCTGGATGAAGGCTTTTGGAGGAGAACCAAAACGACAAGTTCCAAGA
AGAAGATGAAGCTCCGCCTCCGCCGCTTAGTCCCAACCCTGCCCAGGAAGAAGGGCCCGTGGGGCTTTGCCTGTGCCCGTCCACCAAAGG
CTGTCATGTGTCTCGAAATCAGCAGCCCTCCCCATCCCAATCCCAGGCAGCTTGTGTGTACAATCAGCTTCTCTAGCAACTCTGTATCTG
TTGGCTTCAAGAGAATATTTTGCCTCCACATATGTACCCCTTCTCCTTTTTTTAAAGATGGATTTAAACCAAGATGCCTCCAGGAAAGAG
GACGAAATGAGTATATTCACAGAGGAATCCAAAAAATACAGTTTGGGGGAAAATGCAATAATTTTTGATGAGATGGGTGAAGGACAAGAA
GTGAGTTGTGTCAATTATTGTAGATACAATTTTCTGATTAAATCTGGAAAAATAAAAGGCAGCCTGTTTTTTCTGCTTTTATTGTATTAA
CAGCTGAGGTAGCTAAAGTTATTTAAAATAAAATTAAATTTATGATCCAAGTAGCTTATTTTTCCCTTTAAATCTCATTGTAAATATATT
TGATTTCTTGTAGAAATTGATTTCCTTCTGTTTAATTTTATGCTTTTATTATACTCTTGATTTTTCTAAATTTGTGTGTGAAATATAACA
TTGATTGAATTGCAGTTACATTTGGTTAGTAATATTTCATTATTTTAATAACTGTGATGTCATGTATGGATTTACTTTGGGGTTCAAATC
AAAATGTCACTGCCAGAAAGAGCTGTTCCAGCTGATCTAGAGCATACTGCCCTAGAGTGTCCCTGGGATCATCTGAACAGAAGTGCACAG
GCTACTTGTACAGAGAAAAAATTAATACTCAAAGGAAATCTTCATTTTTTAGATTGACTTTGGGAATTTGAATTTTCATCAGTGCAAATA
TAAATTTCTCTATCCTGCTCTGAGGCTAATTGGTACCATATTTTCCCTTTGTGTCTTGTGACTCTGCCACATCCCATCTCATCCTGGCCT
CTGAGTCAAGAACCCAGTGAACTGACTTTCTAGTTCTAGAAGTTCCGCTGCAAGGCCAGGAAAGCTTGAGAAAGGTATTGTGGAAGAAGC
AAAGGTAGACCCCCATCACTCACCTTTGTCTGCATCCCTGGGCCTGTGAATGATGACAGCACCTGACATTCTGCACCAGCTACCTCTGCC
TCCATGGCAGAGAAAAGGCCATAAGAACAGTGGAAGAGGAGCATGGACTCAGACTTCAAGGAAGAAGCCATTTCCCCAGGTCCTTCCTTC
TGCATCTCACCACCCCTAGTTACAAATAACTCCATTGAACAGCATCTATTCAGAAACTATGCCGAATAAAAAGATTGGTGGAAGGGCTCA
TGTGGTTAGCAACTATGAAACAGAAATAGGACACTCAGTTACAAACATTATCTCCTTTAGTTTTTCAGAAAATGCATCCCTGATTTCATT
CATTTCCAGCTTGAAAGCCAGCCATATTACTCTAGTCCCTACCAAACTGCTCTAGAAGGTCATTTCCATTTTGTTTGTGATATTTAGACG
CGCAGACTTCAGGAAGTTCACCTTTAACTTCAGCATTCCAGATGAAGTTTCCTGACTCAGTGCTTTTGCATAAGGAACTAGAAAAAAAAA
GTAAGGAAAATTGGAGATGCTAACATCCTCCCCCATCCCAACTGCACCTTAAAATATGCATGTCACCTTCAAGGTTTTATAATTGCACTG
TTTGTTTTATGTATGTACAGATTAAAATTATTGCTACATTTGAGGAAAATAAAATTGCTTGCTTCTATGTAATTCCTGTCATTCCACAGG
AAATTCACTTTTCCAGCTACTGAATAGAATTTGTTTAACAACCTCATGGGTTGCCTCTTCATTTACAGGGAAGAAATGAAATGTACATCT

>In-frame_ENST00000392070_ENST00000406961_AY633656_PAX3_chr2_223085940_-_NCOA1_chr2_24949456_length(amino acids)=894AA_start in transcript=381_stop in transcript=3065
MTTLAGAVPRMMRPGPGQNYPRSGFPLEVSTPLGQGRVNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILCRY
QETGSIRPGAIGGSKPKQVTTPDVEKKIEEYKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSSISRILRSKFGKGEEEEADLERKEAEES
EKKAKHSIDGILSERASAPQSDEGSDIDSEPDLPLKRKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNR
RARWRKQAGANQLMAFNHLIPGGFPPTAMPTLPTYQLSETSYQPTSIPQGLPELELEAIDNQFGQPGTGDQIPWTNNTVTAINQSKSEDQ
CISSQLDELLCPPTTVEGRNDEKALLEQLVSFLSGKDETELAELDRALGIDKLVQGGGLDVLSERFPPQQATPPLIMEERPNLYSQPYSS
PSPTANLPSPFQGMVRQKPSLGTMPVQVTPPRGAFSPGMGMQPRQTLNRPPAAPNQLRLQLQQRLQGQQQLIHQNRQAILNQFAATAPVG
INMRSGMQQQITPQPPLNAQMLAQRQRELYSQQHRQRQLIQQQRAMLMRQQSFGNNLPPSSGLPVQMGNPRLPQGAPQQFPYPPNYGTNP
GTPPASTSPFSQLAANPEASLANRNSMVSRGMTGNIGGQFGTGINPQMQQNVFQYPGAGMVPQGEANFAPSLSPGSSMVPMPIPPPQSSL
LQQTPPASGYQSPDMKAWQQGAIGNNNVFSQAVQNQPTPAQPGVYNNMSITVSMAGGNTNVQNMNPMMAQMQMSSLQMPGMNTVCPEQIN

--------------------------------------------------------------
>In-frame_ENST00000409551_ENST00000406961_AY633656_PAX3_chr2_223085940_-_NCOA1_chr2_24949456_length(transcript)=5273nt_BP=1235nt
AGTCGCTGGAACATTTGCCCAGACTCGTACCAAACTTTTCCGCCCTGGGCTCGGGATCCTGGACTCCGGGGCCTCCCCGTCCTCCCCTTT
CCCGGGTTCCAGCTCCGGCCTCTGGACTAGGAACCGACAGCCCCCCTCCCCGCGTCCCTCCCTCTCTCTCCAGCCGTTTTGGGGAGGGGC
TCTCCACGCTCCGGATAGTTCCCGAGGGTCATCCGCGCCGCACTCGCCTTTCCGTTTCGCCTTCACCTGGATATAATTTCCGAGCGAAGC
TGCCCCCAGGATGACCACGCTGGCCGGCGCTGTGCCCAGGATGATGCGGCCGGGCCCGGGGCAGAACTACCCGCGTAGCGGGTTCCCGCT
GGAAGTGTCCACTCCCCTCGGCCAGGGCCGCGTCAACCAGCTCGGCGGTGTTTTTATCAACGGCAGGCCGCTGCCCAACCACATCCGCCA
CAAGATCGTGGAGATGGCCCACCACGGCATCCGGCCCTGCGTCATCTCGCGCCAGCTGCGCGTGTCCCACGGCTGCGTCTCCAAGATCCT
GTGCAGGTACCAGGAGACTGGCTCCATACGTCCTGGTGCCATCGGCGGCAGCAAGCCCAAGGTGACAACGCCTGACGTGGAGAAGAAAAT
TGAGGAATACAAAAGAGAGAACCCGGGCATGTTCAGCTGGGAAATCCGAGACAAATTACTCAAGGACGCGGTCTGTGATCGAAACACCGT
GCCGTCAGTGAGTTCCATCAGCCGCATCCTGAGAAGTAAATTCGGGAAAGGTGAAGAGGAGGAGGCCGACTTGGAGAGGAAGGAGGCAGA
GGAAAGCGAGAAGAAGGCCAAACACAGCATCGACGGCATCCTGAGCGAGCGAGCCTCAGCACCCCAATCAGATGAAGGCTCTGATATTGA
CTCTGAACCAGATTTACCACTAAAGAGGAAACAGCGCAGAAGCCGAACCACCTTCACAGCAGAACAGCTGGAGGAACTGGAGCGTGCTTT
TGAGAGAACTCATTACCCTGACATTTATACTAGGGAGGAACTGGCCCAGAGGGCGAAGCTCACCGAGGCCCGAGTACAGGTCTGGTTTAG
CAACCGCCGTGCAAGATGGAGGAAGCAAGCTGGGGCCAATCAACTGATGGCTTTCAACCATCTCATTCCCGGGGGGTTCCCTCCCACTGC
CATGCCGACCTTGCCAACGTACCAGCTGTCGGAGACCTCTTACCAGCCCACATCTATTCCACAAGGATTACCTGAGCTGGAATTGGAAGC
AATTGATAACCAATTTGGACAACCAGGAACAGGCGATCAGATTCCATGGACAAATAATACAGTGACAGCTATAAATCAGAGTAAATCAGA
AGACCAGTGTATTAGCTCACAATTAGATGAGCTTCTCTGTCCACCCACAACAGTAGAAGGGAGAAATGATGAGAAGGCTCTTCTTGAACA
GCTGGTATCCTTCCTTAGTGGCAAAGATGAAACTGAGCTAGCTGAACTAGACAGAGCTCTGGGAATTGACAAACTTGTTCAGGGGGGTGG
ATTAGATGTATTATCAGAGAGATTTCCACCACAACAAGCAACGCCACCTTTGATCATGGAAGAAAGACCCAACCTTTATTCCCAGCCTTA
CTCTTCTCCTTCTCCTACTGCCAATCTCCCTAGCCCTTTCCAAGGCATGGTCAGGCAAAAACCTTCACTGGGGACGATGCCTGTTCAAGT
AACACCTCCCCGAGGTGCTTTTTCACCTGGCATGGGCATGCAGCCCAGGCAAACTCTAAACAGACCTCCGGCTGCACCTAACCAGCTTCG
ACTTCAACTACAGCAGCGATTACAGGGACAACAGCAGTTGATACACCAAAATCGGCAAGCTATCTTAAACCAGTTTGCAGCAACTGCTCC
TGTTGGCATCAATATGAGATCAGGCATGCAACAGCAAATTACACCTCAGCCACCCCTGAATGCTCAAATGTTGGCACAACGTCAGCGGGA
ACTGTACAGTCAACAGCACCGACAGAGGCAGCTAATACAGCAGCAAAGAGCCATGCTTATGAGGCAGCAAAGCTTTGGGAACAACCTCCC
TCCCTCATCTGGACTACCAGTTCAAATGGGGAACCCCCGTCTTCCTCAGGGTGCTCCACAGCAATTCCCCTATCCACCAAACTATGGTAC
AAATCCAGGAACCCCACCTGCTTCTACCAGCCCGTTTTCACAACTAGCAGCAAATCCTGAAGCATCCTTGGCCAACCGCAACAGCATGGT
GAGCAGAGGCATGACAGGAAACATAGGAGGACAGTTTGGCACTGGAATCAATCCTCAGATGCAGCAGAATGTCTTCCAGTATCCAGGAGC
AGGAATGGTTCCCCAAGGTGAGGCCAACTTTGCTCCATCTCTAAGCCCTGGGAGCTCCATGGTGCCGATGCCAATCCCTCCTCCTCAGAG
TTCTCTTCTCCAGCAAACTCCACCTGCCTCCGGGTATCAGTCACCAGACATGAAGGCCTGGCAGCAAGGAGCGATAGGAAACAACAATGT
GTTCAGTCAAGCTGTCCAGAACCAGCCCACGCCTGCACAGCCAGGAGTATACAACAACATGAGCATCACCGTTTCCATGGCAGGTGGAAA
TACGAATGTTCAGAACATGAACCCAATGATGGCCCAGATGCAGATGAGCTCTTTGCAGATGCCAGGAATGAACACTGTGTGCCCTGAGCA
GATAAATGATCCCGCACTGAGACACACAGGCCTCTACTGCAACCAGCTCTCATCCACTGACCTTCTCAAAACAGAAGCAGATGGAACCCA
GCAGGTGCAACAGGTTCAGGTGTTTGCTGACGTCCAGTGTACAGTGAATCTGGTAGGCGGGGACCCTTACCTGAACCAGCCTGGTCCACT
GGGAACTCAAAAGCCCACGTCAGGACCACAGACCCCCCAGGCCCAGCAGAAGAGCCTCCTTCAGCAGCTACTGACTGAATAACCACTTTT
AAAGGAATGTGAAATTTAAATAATAGACATACAGAGATATACAAATATATTATATATTTTTCTGAGATTTTTGATATCTCAATCTGCAGC
CATTCTTCAGGTCGTAGCATTTGGAGCAAAAAAAAAAAAAAAAAAAAAAAAAGGAGTTTGCTTTTGTCGGGAGATTGAAAGATGTTTTTG
TTTCTTTCTTTGTAAAGGCCTTGGATATTGAAAAAATACCAAGGCAGAACAGTTGGACAATCTATTTCTTGAGCCAAATTTAATTATTCT
TATTTTTGTAATCAGTCATTGGCTTCTTATCTGGATGAAGGCTTTTGGAGGAGAACCAAAACGACAAGTTCCAAGAAGAAGATGAAGCTC
CGCCTCCGCCGCTTAGTCCCAACCCTGCCCAGGAAGAAGGGCCCGTGGGGCTTTGCCTGTGCCCGTCCACCAAAGGCTGTCATGTGTCTC
GAAATCAGCAGCCCTCCCCATCCCAATCCCAGGCAGCTTGTGTGTACAATCAGCTTCTCTAGCAACTCTGTATCTGTTGGCTTCAAGAGA
ATATTTTGCCTCCACATATGTACCCCTTCTCCTTTTTTTAAAGATGGATTTAAACCAAGATGCCTCCAGGAAAGAGGACGAAATGAGTAT
ATTCACAGAGGAATCCAAAAAATACAGTTTGGGGGAAAATGCAATAATTTTTGATGAGATGGGTGAAGGACAAGAAGTGAGTTGTGTCAA
TTATTGTAGATACAATTTTCTGATTAAATCTGGAAAAATAAAAGGCAGCCTGTTTTTTCTGCTTTTATTGTATTAACAGCTGAGGTAGCT
AAAGTTATTTAAAATAAAATTAAATTTATGATCCAAGTAGCTTATTTTTCCCTTTAAATCTCATTGTAAATATATTTGATTTCTTGTAGA
AATTGATTTCCTTCTGTTTAATTTTATGCTTTTATTATACTCTTGATTTTTCTAAATTTGTGTGTGAAATATAACATTGATTGAATTGCA
GTTACATTTGGTTAGTAATATTTCATTATTTTAATAACTGTGATGTCATGTATGGATTTACTTTGGGGTTCAAATCAAAATGTCACTGCC
AGAAAGAGCTGTTCCAGCTGATCTAGAGCATACTGCCCTAGAGTGTCCCTGGGATCATCTGAACAGAAGTGCACAGGCTACTTGTACAGA
GAAAAAATTAATACTCAAAGGAAATCTTCATTTTTTAGATTGACTTTGGGAATTTGAATTTTCATCAGTGCAAATATAAATTTCTCTATC
CTGCTCTGAGGCTAATTGGTACCATATTTTCCCTTTGTGTCTTGTGACTCTGCCACATCCCATCTCATCCTGGCCTCTGAGTCAAGAACC
CAGTGAACTGACTTTCTAGTTCTAGAAGTTCCGCTGCAAGGCCAGGAAAGCTTGAGAAAGGTATTGTGGAAGAAGCAAAGGTAGACCCCC
ATCACTCACCTTTGTCTGCATCCCTGGGCCTGTGAATGATGACAGCACCTGACATTCTGCACCAGCTACCTCTGCCTCCATGGCAGAGAA
AAGGCCATAAGAACAGTGGAAGAGGAGCATGGACTCAGACTTCAAGGAAGAAGCCATTTCCCCAGGTCCTTCCTTCTGCATCTCACCACC
CCTAGTTACAAATAACTCCATTGAACAGCATCTATTCAGAAACTATGCCGAATAAAAAGATTGGTGGAAGGGCTCATGTGGTTAGCAACT
ATGAAACAGAAATAGGACACTCAGTTACAAACATTATCTCCTTTAGTTTTTCAGAAAATGCATCCCTGATTTCATTCATTTCCAGCTTGA
AAGCCAGCCATATTACTCTAGTCCCTACCAAACTGCTCTAGAAGGTCATTTCCATTTTGTTTGTGATATTTAGACGCGCAGACTTCAGGA
AGTTCACCTTTAACTTCAGCATTCCAGATGAAGTTTCCTGACTCAGTGCTTTTGCATAAGGAACTAGAAAAAAAAAGTAAGGAAAATTGG
AGATGCTAACATCCTCCCCCATCCCAACTGCACCTTAAAATATGCATGTCACCTTCAAGGTTTTATAATTGCACTGTTTGTTTTATGTAT
GTACAGATTAAAATTATTGCTACATTTGAGGAAAATAAAATTGCTTGCTTCTATGTAATTCCTGTCATTCCACAGGAAATTCACTTTTCC
AGCTACTGAATAGAATTTGTTTAACAACCTCATGGGTTGCCTCTTCATTTACAGGGAAGAAATGAAATGTACATCTGCAGAAATTGCCAA

>In-frame_ENST00000409551_ENST00000406961_AY633656_PAX3_chr2_223085940_-_NCOA1_chr2_24949456_length(amino acids)=893AA_start in transcript=280_stop in transcript=2961
MTTLAGAVPRMMRPGPGQNYPRSGFPLEVSTPLGQGRVNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILCRY
QETGSIRPGAIGGSKPKVTTPDVEKKIEEYKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSSISRILRSKFGKGEEEEADLERKEAEESE
KKAKHSIDGILSERASAPQSDEGSDIDSEPDLPLKRKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRR
ARWRKQAGANQLMAFNHLIPGGFPPTAMPTLPTYQLSETSYQPTSIPQGLPELELEAIDNQFGQPGTGDQIPWTNNTVTAINQSKSEDQC
ISSQLDELLCPPTTVEGRNDEKALLEQLVSFLSGKDETELAELDRALGIDKLVQGGGLDVLSERFPPQQATPPLIMEERPNLYSQPYSSP
SPTANLPSPFQGMVRQKPSLGTMPVQVTPPRGAFSPGMGMQPRQTLNRPPAAPNQLRLQLQQRLQGQQQLIHQNRQAILNQFAATAPVGI
NMRSGMQQQITPQPPLNAQMLAQRQRELYSQQHRQRQLIQQQRAMLMRQQSFGNNLPPSSGLPVQMGNPRLPQGAPQQFPYPPNYGTNPG
TPPASTSPFSQLAANPEASLANRNSMVSRGMTGNIGGQFGTGINPQMQQNVFQYPGAGMVPQGEANFAPSLSPGSSMVPMPIPPPQSSLL
QQTPPASGYQSPDMKAWQQGAIGNNNVFSQAVQNQPTPAQPGVYNNMSITVSMAGGNTNVQNMNPMMAQMQMSSLQMPGMNTVCPEQIND

--------------------------------------------------------------

Top

Fusion Gene PPI Analysis for PAX3-NCOA1

Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in
ChiPPI page.

Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)

Hgene

Hgene's interactors

Tgene

Tgene's interactors

- Retained PPIs in in-frame fusion.

Partner

Gene

Hbp

Tbp

ENST

Strand

BPexon

TotalExon

Protein feature loci

*BPloci

TotalLen

Still interaction with

- Lost PPIs in in-frame fusion.

Partner	Gene	Hbp	Tbp	ENST	Strand	BPexon	TotalExon	Protein feature loci	*BPloci	TotalLen	Interaction lost with
Tgene	NCOA1	chr2:223085940	chr2:24949456	ENST00000288599		11	22	781_988	866.3333333333334	2199.3333333333335	CREBBP
Tgene	NCOA1	chr2:223085940	chr2:24949456	ENST00000348332		11	21	781_988	866.3333333333334	1442.0	CREBBP
Tgene	NCOA1	chr2:223085940	chr2:24949456	ENST00000395856		11	21	781_988	866.3333333333334	1441.0	CREBBP
Tgene	NCOA1	chr2:223085940	chr2:24949456	ENST00000405141		14	25	781_988	866.3333333333334	2183.6666666666665	CREBBP
Tgene	NCOA1	chr2:223085940	chr2:24949456	ENST00000406961		13	23	781_988	866.3333333333334	1442.0	CREBBP
Tgene	NCOA1	chr2:223085940	chr2:24949456	ENST00000538539		12	23	781_988	866.3333333333334	1422.6666666666667	CREBBP
Tgene	NCOA1	chr2:223085940	chr2:24949456	ENST00000288599		11	22	361_567	866.3333333333334	2199.3333333333335	STAT3
Tgene	NCOA1	chr2:223085940	chr2:24949456	ENST00000348332		11	21	361_567	866.3333333333334	1442.0	STAT3
Tgene	NCOA1	chr2:223085940	chr2:24949456	ENST00000395856		11	21	361_567	866.3333333333334	1441.0	STAT3
Tgene	NCOA1	chr2:223085940	chr2:24949456	ENST00000405141		14	25	361_567	866.3333333333334	2183.6666666666665	STAT3
Tgene	NCOA1	chr2:223085940	chr2:24949456	ENST00000406961		13	23	361_567	866.3333333333334	1442.0	STAT3
Tgene	NCOA1	chr2:223085940	chr2:24949456	ENST00000538539		12	23	361_567	866.3333333333334	1422.6666666666667	STAT3

- Retained PPIs, but lost function due to frame-shift fusion.

Partner

Gene

Hbp

Tbp

ENST

Strand

BPexon

TotalExon

Protein feature loci

*BPloci

TotalLen

Interaction lost with

Top

Related Drugs for PAX3-NCOA1

Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.8 2021-05-08)

Partner

Gene

UniProtAcc

DrugBank ID

Drug name

Drug activity

Drug type

Drug status

Top

Related Diseases for PAX3-NCOA1

Diseases associated with fusion partners.
(DisGeNet 4.0)

Partner	Gene	Disease ID	Disease name	# pubmeds	Source
Hgene	PAX3	C1847800	Waardenburg Syndrome Type 1	33	CLINGEN;CTD_human;GENOMICS_ENGLAND;UNIPROT
Hgene	PAX3	C0079661	Klein's Syndrome	16	CLINGEN;CTD_human;GENOMICS_ENGLAND;ORPHANET;UNIPROT
Hgene	PAX3	C3266898	Waardenburg Syndrome	12	CLINGEN;CTD_human;GENOMICS_ENGLAND
Hgene	PAX3	C1852510	Craniofacial deafness hand syndrome	5	CTD_human;GENOMICS_ENGLAND;ORPHANET;UNIPROT
Hgene	PAX3	C0038219	Status Dysraphicus	4	CTD_human
Hgene	PAX3	C0080178	Spina Bifida	4	CTD_human
Hgene	PAX3	C0266508	Rachischisis	4	CTD_human
Hgene	PAX3	C0011999	Diastematomyelia	3	CTD_human
Hgene	PAX3	C0027794	Neural Tube Defects	3	CTD_human
Hgene	PAX3	C0027806	Neurenteric Cyst	3	CTD_human
Hgene	PAX3	C0080218	Tethered Cord Syndrome	3	CTD_human
Hgene	PAX3	C0152234	Iniencephaly	3	CTD_human
Hgene	PAX3	C0152426	Craniorachischisis	3	CTD_human
Hgene	PAX3	C0266453	Exencephaly	3	CTD_human
Hgene	PAX3	C0344479	Spinal Cord Myelodysplasia	3	CTD_human
Hgene	PAX3	C0599973	Waardenburg Anophthalmia Syndrome	3	ORPHANET
Hgene	PAX3	C0702169	Acrania	3	CTD_human
Hgene	PAX3	C0206655	Alveolar rhabdomyosarcoma	2	CTD_human;GENOMICS_ENGLAND;ORPHANET
Hgene	PAX3	C0011052	Prelingual Deafness	1	CTD_human
Hgene	PAX3	C0011053	Deafness	1	CTD_human
Hgene	PAX3	C0018566	Congenital Hand Deformities	1	CTD_human
Hgene	PAX3	C0086395	Hearing Loss, Extreme	1	CTD_human
Hgene	PAX3	C0205944	Sarcoma, Epithelioid	1	CTD_human
Hgene	PAX3	C0205945	Sarcoma, Spindle Cell	1	CTD_human
Hgene	PAX3	C0265541	Cranioschisis	1	CTD_human
Hgene	PAX3	C0376634	Craniofacial Abnormalities	1	CTD_human
Hgene	PAX3	C0497552	Congenital neurologic anomalies	1	CTD_human
Hgene	PAX3	C0581883	Complete Hearing Loss	1	CTD_human
Hgene	PAX3	C0751068	Deafness, Acquired	1	CTD_human
Hgene	PAX3	C1261473	Sarcoma	1	CTD_human
Hgene	PAX3	C1710096	Sinonasal undifferentiated carcinoma	1	CTD_human
Hgene	PAX3	C3665473	Bilateral Deafness	1	CTD_human
Hgene	PAX3	C4082305	Deaf Mutism	1	CTD_human
Tgene	NCOA1	C0006142	Malignant neoplasm of breast	1	CTD_human
Tgene	NCOA1	C0014175	Endometriosis	1	CTD_human
Tgene	NCOA1	C0024668	Mammary Neoplasms, Experimental	1	CTD_human
Tgene	NCOA1	C0027627	Neoplasm Metastasis	1	CTD_human
Tgene	NCOA1	C0033578	Prostatic Neoplasms	1	CTD_human
Tgene	NCOA1	C0269102	Endometrioma	1	CTD_human
Tgene	NCOA1	C0376358	Malignant neoplasm of prostate	1	CTD_human
Tgene	NCOA1	C0678222	Breast Carcinoma	1	CTD_human
Tgene	NCOA1	C1257931	Mammary Neoplasms, Human	1	CTD_human
Tgene	NCOA1	C1458155	Mammary Neoplasms	1	CTD_human
Tgene	NCOA1	C4704874	Mammary Carcinoma, Human	1	CTD_human