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Fusion Gene Summary | |
Fusion Gene ORF analysis | |
Fusion Genomic Features | |
Fusion Protein Features | |
Fusion Gene Sequence | |
Fusion Gene PPI analysis | |
Related Drugs | |
Related Diseases |
Fusion gene:PCMTD1-SLCO5A1 (FusionGDB2 ID:62979) |
Fusion Gene Summary for PCMTD1-SLCO5A1 |
Fusion gene summary |
Fusion gene information | Fusion gene name: PCMTD1-SLCO5A1 | Fusion gene ID: 62979 | Hgene | Tgene | Gene symbol | PCMTD1 | SLCO5A1 | Gene ID | 115294 | 81796 |
Gene name | protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1 | solute carrier organic anion transporter family member 5A1 | |
Synonyms | - | OATP-J|OATP-RP4|OATP5A1|OATPJ|OATPRP4|SLC21A15 | |
Cytomap | 8q11.23 | 8q13.3 | |
Type of gene | protein-coding | protein-coding | |
Description | protein-L-isoaspartate O-methyltransferase domain-containing protein 1 | solute carrier organic anion transporter family member 5A1organic anion transporter polypeptide-related protein 4solute carrier family 21 (organic anion transporter), member 15solute carrier family 21 member 15 | |
Modification date | 20200313 | 20200313 | |
UniProtAcc | . | . | |
Ensembl transtripts involved in fusion gene | ENST00000360540, ENST00000544451, ENST00000519559, ENST00000522514, ENST00000521344, | ENST00000260126, ENST00000524945, ENST00000530307, ENST00000528658, | |
Fusion gene scores | * DoF score | 27 X 12 X 15=4860 | 4 X 3 X 4=48 |
# samples | 40 | 4 | |
** MAII score | log2(40/4860*10)=-3.60288440871842 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(4/48*10)=-0.263034405833794 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
Context | PubMed: PCMTD1 [Title/Abstract] AND SLCO5A1 [Title/Abstract] AND fusion [Title/Abstract] | ||
Most frequent breakpoint | PCMTD1(52758221)-SLCO5A1(70674110), # samples:3 | ||
Anticipated loss of major functional domain due to fusion event. | PCMTD1-SLCO5A1 seems lost the major protein functional domain in Tgene partner, which is a IUPHAR drug target due to the frame-shifted ORF. |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
Partner | Gene | GO ID | GO term | PubMed ID |
Fusion gene breakpoints across PCMTD1 (5'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
Fusion gene breakpoints across SLCO5A1 (3'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Source | Disease | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
ChimerDB4 | SKCM | TCGA-EE-A2MH-06A | PCMTD1 | chr8 | 52758221 | - | SLCO5A1 | chr8 | 70674110 | - |
ChimerDB4 | SKCM | TCGA-EE-A2MH-06A | PCMTD1 | chr8 | 52758221 | - | SLCO5A1 | chr8 | 70674110 | - |
ChimerDB4 | SKCM | TCGA-EE-A2MH-06A | PCMTD1 | chr8 | 52758221 | - | SLCO5A1 | chr8 | 70674110 | - |
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Fusion Gene ORF analysis for PCMTD1-SLCO5A1 |
Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
In-frame | ENST00000360540 | ENST00000260126 | PCMTD1 | chr8 | 52758221 | - | SLCO5A1 | chr8 | 70674110 | - |
In-frame | ENST00000360540 | ENST00000524945 | PCMTD1 | chr8 | 52758221 | - | SLCO5A1 | chr8 | 70674110 | - |
In-frame | ENST00000360540 | ENST00000530307 | PCMTD1 | chr8 | 52758221 | - | SLCO5A1 | chr8 | 70674110 | - |
5CDS-5UTR | ENST00000360540 | ENST00000528658 | PCMTD1 | chr8 | 52758221 | - | SLCO5A1 | chr8 | 70674110 | - |
intron-3CDS | ENST00000544451 | ENST00000260126 | PCMTD1 | chr8 | 52758221 | - | SLCO5A1 | chr8 | 70674110 | - |
intron-3CDS | ENST00000544451 | ENST00000524945 | PCMTD1 | chr8 | 52758221 | - | SLCO5A1 | chr8 | 70674110 | - |
intron-3CDS | ENST00000544451 | ENST00000530307 | PCMTD1 | chr8 | 52758221 | - | SLCO5A1 | chr8 | 70674110 | - |
intron-5UTR | ENST00000544451 | ENST00000528658 | PCMTD1 | chr8 | 52758221 | - | SLCO5A1 | chr8 | 70674110 | - |
5UTR-3CDS | ENST00000519559 | ENST00000260126 | PCMTD1 | chr8 | 52758221 | - | SLCO5A1 | chr8 | 70674110 | - |
5UTR-3CDS | ENST00000519559 | ENST00000524945 | PCMTD1 | chr8 | 52758221 | - | SLCO5A1 | chr8 | 70674110 | - |
5UTR-3CDS | ENST00000519559 | ENST00000530307 | PCMTD1 | chr8 | 52758221 | - | SLCO5A1 | chr8 | 70674110 | - |
5UTR-5UTR | ENST00000519559 | ENST00000528658 | PCMTD1 | chr8 | 52758221 | - | SLCO5A1 | chr8 | 70674110 | - |
Frame-shift | ENST00000522514 | ENST00000260126 | PCMTD1 | chr8 | 52758221 | - | SLCO5A1 | chr8 | 70674110 | - |
Frame-shift | ENST00000522514 | ENST00000524945 | PCMTD1 | chr8 | 52758221 | - | SLCO5A1 | chr8 | 70674110 | - |
Frame-shift | ENST00000522514 | ENST00000530307 | PCMTD1 | chr8 | 52758221 | - | SLCO5A1 | chr8 | 70674110 | - |
5CDS-5UTR | ENST00000522514 | ENST00000528658 | PCMTD1 | chr8 | 52758221 | - | SLCO5A1 | chr8 | 70674110 | - |
intron-3CDS | ENST00000521344 | ENST00000260126 | PCMTD1 | chr8 | 52758221 | - | SLCO5A1 | chr8 | 70674110 | - |
intron-3CDS | ENST00000521344 | ENST00000524945 | PCMTD1 | chr8 | 52758221 | - | SLCO5A1 | chr8 | 70674110 | - |
intron-3CDS | ENST00000521344 | ENST00000530307 | PCMTD1 | chr8 | 52758221 | - | SLCO5A1 | chr8 | 70674110 | - |
intron-5UTR | ENST00000521344 | ENST00000528658 | PCMTD1 | chr8 | 52758221 | - | SLCO5A1 | chr8 | 70674110 | - |
ORFfinder result based on the fusion transcript sequence of in-frame fusion genes. |
Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | Seq length (transcript) | BP loci (transcript) | Predicted start (transcript) | Predicted stop (transcript) | Seq length (amino acids) |
ENST00000360540 | PCMTD1 | chr8 | 52758221 | - | ENST00000260126 | SLCO5A1 | chr8 | 70674110 | - | 8279 | 817 | 732 | 2456 | 574 |
ENST00000360540 | PCMTD1 | chr8 | 52758221 | - | ENST00000524945 | SLCO5A1 | chr8 | 70674110 | - | 2918 | 817 | 732 | 1973 | 413 |
ENST00000360540 | PCMTD1 | chr8 | 52758221 | - | ENST00000530307 | SLCO5A1 | chr8 | 70674110 | - | 2498 | 817 | 732 | 2291 | 519 |
DeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated. |
Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | No-coding score | Coding score |
ENST00000360540 | ENST00000260126 | PCMTD1 | chr8 | 52758221 | - | SLCO5A1 | chr8 | 70674110 | - | 0.000100662 | 0.9998994 |
ENST00000360540 | ENST00000524945 | PCMTD1 | chr8 | 52758221 | - | SLCO5A1 | chr8 | 70674110 | - | 0.000552925 | 0.99944705 |
ENST00000360540 | ENST00000530307 | PCMTD1 | chr8 | 52758221 | - | SLCO5A1 | chr8 | 70674110 | - | 0.00025479 | 0.9997452 |
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Fusion Genomic Features for PCMTD1-SLCO5A1 |
FusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints. |
Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | 1-p | p (fusion gene breakpoint) |
Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page. |
Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page. |
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Fusion Protein Features for PCMTD1-SLCO5A1 |
Go to FGviewer for the breakpoints of chr8:52758221-chr8:70674110 - FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels. |
Main function of each fusion partner protein. (from UniProt) |
Hgene | Tgene |
. | . |
FUNCTION: Might normally function as a transcriptional repressor. EWS-fusion-proteins (EFPS) may play a role in the tumorigenic process. They may disturb gene expression by mimicking, or interfering with the normal function of CTD-POLII within the transcription initiation complex. They may also contribute to an aberrant activation of the fusion protein target genes. | FUNCTION: Might normally function as a transcriptional repressor. EWS-fusion-proteins (EFPS) may play a role in the tumorigenic process. They may disturb gene expression by mimicking, or interfering with the normal function of CTD-POLII within the transcription initiation complex. They may also contribute to an aberrant activation of the fusion protein target genes. |
Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Tgene | SLCO5A1 | chr8:52758221 | chr8:70674110 | ENST00000260126 | 1 | 10 | 377_383 | 302.3333333333333 | 849.0 | Compositional bias | Note=Poly-Lys | |
Tgene | SLCO5A1 | chr8:52758221 | chr8:70674110 | ENST00000524945 | 0 | 8 | 377_383 | 302.3333333333333 | 688.0 | Compositional bias | Note=Poly-Lys | |
Tgene | SLCO5A1 | chr8:52758221 | chr8:70674110 | ENST00000530307 | 0 | 8 | 377_383 | 302.3333333333333 | 794.0 | Compositional bias | Note=Poly-Lys | |
Tgene | SLCO5A1 | chr8:52758221 | chr8:70674110 | ENST00000260126 | 1 | 10 | 549_603 | 302.3333333333333 | 849.0 | Domain | Kazal-like | |
Tgene | SLCO5A1 | chr8:52758221 | chr8:70674110 | ENST00000524945 | 0 | 8 | 549_603 | 302.3333333333333 | 688.0 | Domain | Kazal-like | |
Tgene | SLCO5A1 | chr8:52758221 | chr8:70674110 | ENST00000530307 | 0 | 8 | 549_603 | 302.3333333333333 | 794.0 | Domain | Kazal-like | |
Tgene | SLCO5A1 | chr8:52758221 | chr8:70674110 | ENST00000260126 | 1 | 10 | 330_344 | 302.3333333333333 | 849.0 | Topological domain | Extracellular | |
Tgene | SLCO5A1 | chr8:52758221 | chr8:70674110 | ENST00000260126 | 1 | 10 | 370_427 | 302.3333333333333 | 849.0 | Topological domain | Cytoplasmic | |
Tgene | SLCO5A1 | chr8:52758221 | chr8:70674110 | ENST00000260126 | 1 | 10 | 450_469 | 302.3333333333333 | 849.0 | Topological domain | Extracellular | |
Tgene | SLCO5A1 | chr8:52758221 | chr8:70674110 | ENST00000260126 | 1 | 10 | 494_497 | 302.3333333333333 | 849.0 | Topological domain | Cytoplasmic | |
Tgene | SLCO5A1 | chr8:52758221 | chr8:70674110 | ENST00000260126 | 1 | 10 | 522_651 | 302.3333333333333 | 849.0 | Topological domain | Extracellular | |
Tgene | SLCO5A1 | chr8:52758221 | chr8:70674110 | ENST00000260126 | 1 | 10 | 675_683 | 302.3333333333333 | 849.0 | Topological domain | Cytoplasmic | |
Tgene | SLCO5A1 | chr8:52758221 | chr8:70674110 | ENST00000260126 | 1 | 10 | 710_742 | 302.3333333333333 | 849.0 | Topological domain | Extracellular | |
Tgene | SLCO5A1 | chr8:52758221 | chr8:70674110 | ENST00000260126 | 1 | 10 | 761_808 | 302.3333333333333 | 849.0 | Topological domain | Cytoplasmic | |
Tgene | SLCO5A1 | chr8:52758221 | chr8:70674110 | ENST00000524945 | 0 | 8 | 330_344 | 302.3333333333333 | 688.0 | Topological domain | Extracellular | |
Tgene | SLCO5A1 | chr8:52758221 | chr8:70674110 | ENST00000524945 | 0 | 8 | 370_427 | 302.3333333333333 | 688.0 | Topological domain | Cytoplasmic | |
Tgene | SLCO5A1 | chr8:52758221 | chr8:70674110 | ENST00000524945 | 0 | 8 | 450_469 | 302.3333333333333 | 688.0 | Topological domain | Extracellular | |
Tgene | SLCO5A1 | chr8:52758221 | chr8:70674110 | ENST00000524945 | 0 | 8 | 494_497 | 302.3333333333333 | 688.0 | Topological domain | Cytoplasmic | |
Tgene | SLCO5A1 | chr8:52758221 | chr8:70674110 | ENST00000524945 | 0 | 8 | 522_651 | 302.3333333333333 | 688.0 | Topological domain | Extracellular | |
Tgene | SLCO5A1 | chr8:52758221 | chr8:70674110 | ENST00000524945 | 0 | 8 | 675_683 | 302.3333333333333 | 688.0 | Topological domain | Cytoplasmic | |
Tgene | SLCO5A1 | chr8:52758221 | chr8:70674110 | ENST00000524945 | 0 | 8 | 710_742 | 302.3333333333333 | 688.0 | Topological domain | Extracellular | |
Tgene | SLCO5A1 | chr8:52758221 | chr8:70674110 | ENST00000524945 | 0 | 8 | 761_808 | 302.3333333333333 | 688.0 | Topological domain | Cytoplasmic | |
Tgene | SLCO5A1 | chr8:52758221 | chr8:70674110 | ENST00000530307 | 0 | 8 | 330_344 | 302.3333333333333 | 794.0 | Topological domain | Extracellular | |
Tgene | SLCO5A1 | chr8:52758221 | chr8:70674110 | ENST00000530307 | 0 | 8 | 370_427 | 302.3333333333333 | 794.0 | Topological domain | Cytoplasmic | |
Tgene | SLCO5A1 | chr8:52758221 | chr8:70674110 | ENST00000530307 | 0 | 8 | 450_469 | 302.3333333333333 | 794.0 | Topological domain | Extracellular | |
Tgene | SLCO5A1 | chr8:52758221 | chr8:70674110 | ENST00000530307 | 0 | 8 | 494_497 | 302.3333333333333 | 794.0 | Topological domain | Cytoplasmic | |
Tgene | SLCO5A1 | chr8:52758221 | chr8:70674110 | ENST00000530307 | 0 | 8 | 522_651 | 302.3333333333333 | 794.0 | Topological domain | Extracellular | |
Tgene | SLCO5A1 | chr8:52758221 | chr8:70674110 | ENST00000530307 | 0 | 8 | 675_683 | 302.3333333333333 | 794.0 | Topological domain | Cytoplasmic | |
Tgene | SLCO5A1 | chr8:52758221 | chr8:70674110 | ENST00000530307 | 0 | 8 | 710_742 | 302.3333333333333 | 794.0 | Topological domain | Extracellular | |
Tgene | SLCO5A1 | chr8:52758221 | chr8:70674110 | ENST00000530307 | 0 | 8 | 761_808 | 302.3333333333333 | 794.0 | Topological domain | Cytoplasmic | |
Tgene | SLCO5A1 | chr8:52758221 | chr8:70674110 | ENST00000260126 | 1 | 10 | 310_329 | 302.3333333333333 | 849.0 | Transmembrane | Helical%3B Name%3D5 | |
Tgene | SLCO5A1 | chr8:52758221 | chr8:70674110 | ENST00000260126 | 1 | 10 | 345_369 | 302.3333333333333 | 849.0 | Transmembrane | Helical%3B Name%3D6 | |
Tgene | SLCO5A1 | chr8:52758221 | chr8:70674110 | ENST00000260126 | 1 | 10 | 428_449 | 302.3333333333333 | 849.0 | Transmembrane | Helical%3B Name%3D7 | |
Tgene | SLCO5A1 | chr8:52758221 | chr8:70674110 | ENST00000260126 | 1 | 10 | 470_493 | 302.3333333333333 | 849.0 | Transmembrane | Helical%3B Name%3D8 | |
Tgene | SLCO5A1 | chr8:52758221 | chr8:70674110 | ENST00000260126 | 1 | 10 | 498_521 | 302.3333333333333 | 849.0 | Transmembrane | Helical%3B Name%3D9 | |
Tgene | SLCO5A1 | chr8:52758221 | chr8:70674110 | ENST00000260126 | 1 | 10 | 652_674 | 302.3333333333333 | 849.0 | Transmembrane | Helical%3B Name%3D10 | |
Tgene | SLCO5A1 | chr8:52758221 | chr8:70674110 | ENST00000260126 | 1 | 10 | 684_709 | 302.3333333333333 | 849.0 | Transmembrane | Helical%3B Name%3D11 | |
Tgene | SLCO5A1 | chr8:52758221 | chr8:70674110 | ENST00000260126 | 1 | 10 | 743_760 | 302.3333333333333 | 849.0 | Transmembrane | Helical%3B Name%3D12 | |
Tgene | SLCO5A1 | chr8:52758221 | chr8:70674110 | ENST00000524945 | 0 | 8 | 310_329 | 302.3333333333333 | 688.0 | Transmembrane | Helical%3B Name%3D5 | |
Tgene | SLCO5A1 | chr8:52758221 | chr8:70674110 | ENST00000524945 | 0 | 8 | 345_369 | 302.3333333333333 | 688.0 | Transmembrane | Helical%3B Name%3D6 | |
Tgene | SLCO5A1 | chr8:52758221 | chr8:70674110 | ENST00000524945 | 0 | 8 | 428_449 | 302.3333333333333 | 688.0 | Transmembrane | Helical%3B Name%3D7 | |
Tgene | SLCO5A1 | chr8:52758221 | chr8:70674110 | ENST00000524945 | 0 | 8 | 470_493 | 302.3333333333333 | 688.0 | Transmembrane | Helical%3B Name%3D8 | |
Tgene | SLCO5A1 | chr8:52758221 | chr8:70674110 | ENST00000524945 | 0 | 8 | 498_521 | 302.3333333333333 | 688.0 | Transmembrane | Helical%3B Name%3D9 | |
Tgene | SLCO5A1 | chr8:52758221 | chr8:70674110 | ENST00000524945 | 0 | 8 | 652_674 | 302.3333333333333 | 688.0 | Transmembrane | Helical%3B Name%3D10 | |
Tgene | SLCO5A1 | chr8:52758221 | chr8:70674110 | ENST00000524945 | 0 | 8 | 684_709 | 302.3333333333333 | 688.0 | Transmembrane | Helical%3B Name%3D11 | |
Tgene | SLCO5A1 | chr8:52758221 | chr8:70674110 | ENST00000524945 | 0 | 8 | 743_760 | 302.3333333333333 | 688.0 | Transmembrane | Helical%3B Name%3D12 | |
Tgene | SLCO5A1 | chr8:52758221 | chr8:70674110 | ENST00000530307 | 0 | 8 | 310_329 | 302.3333333333333 | 794.0 | Transmembrane | Helical%3B Name%3D5 | |
Tgene | SLCO5A1 | chr8:52758221 | chr8:70674110 | ENST00000530307 | 0 | 8 | 345_369 | 302.3333333333333 | 794.0 | Transmembrane | Helical%3B Name%3D6 | |
Tgene | SLCO5A1 | chr8:52758221 | chr8:70674110 | ENST00000530307 | 0 | 8 | 428_449 | 302.3333333333333 | 794.0 | Transmembrane | Helical%3B Name%3D7 | |
Tgene | SLCO5A1 | chr8:52758221 | chr8:70674110 | ENST00000530307 | 0 | 8 | 470_493 | 302.3333333333333 | 794.0 | Transmembrane | Helical%3B Name%3D8 | |
Tgene | SLCO5A1 | chr8:52758221 | chr8:70674110 | ENST00000530307 | 0 | 8 | 498_521 | 302.3333333333333 | 794.0 | Transmembrane | Helical%3B Name%3D9 | |
Tgene | SLCO5A1 | chr8:52758221 | chr8:70674110 | ENST00000530307 | 0 | 8 | 652_674 | 302.3333333333333 | 794.0 | Transmembrane | Helical%3B Name%3D10 | |
Tgene | SLCO5A1 | chr8:52758221 | chr8:70674110 | ENST00000530307 | 0 | 8 | 684_709 | 302.3333333333333 | 794.0 | Transmembrane | Helical%3B Name%3D11 | |
Tgene | SLCO5A1 | chr8:52758221 | chr8:70674110 | ENST00000530307 | 0 | 8 | 743_760 | 302.3333333333333 | 794.0 | Transmembrane | Helical%3B Name%3D12 |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Tgene | SLCO5A1 | chr8:52758221 | chr8:70674110 | ENST00000260126 | 1 | 10 | 150_168 | 302.3333333333333 | 849.0 | Topological domain | Extracellular | |
Tgene | SLCO5A1 | chr8:52758221 | chr8:70674110 | ENST00000260126 | 1 | 10 | 190_195 | 302.3333333333333 | 849.0 | Topological domain | Cytoplasmic | |
Tgene | SLCO5A1 | chr8:52758221 | chr8:70674110 | ENST00000260126 | 1 | 10 | 1_128 | 302.3333333333333 | 849.0 | Topological domain | Cytoplasmic | |
Tgene | SLCO5A1 | chr8:52758221 | chr8:70674110 | ENST00000260126 | 1 | 10 | 221_260 | 302.3333333333333 | 849.0 | Topological domain | Extracellular | |
Tgene | SLCO5A1 | chr8:52758221 | chr8:70674110 | ENST00000260126 | 1 | 10 | 291_309 | 302.3333333333333 | 849.0 | Topological domain | Cytoplasmic | |
Tgene | SLCO5A1 | chr8:52758221 | chr8:70674110 | ENST00000524945 | 0 | 8 | 150_168 | 302.3333333333333 | 688.0 | Topological domain | Extracellular | |
Tgene | SLCO5A1 | chr8:52758221 | chr8:70674110 | ENST00000524945 | 0 | 8 | 190_195 | 302.3333333333333 | 688.0 | Topological domain | Cytoplasmic | |
Tgene | SLCO5A1 | chr8:52758221 | chr8:70674110 | ENST00000524945 | 0 | 8 | 1_128 | 302.3333333333333 | 688.0 | Topological domain | Cytoplasmic | |
Tgene | SLCO5A1 | chr8:52758221 | chr8:70674110 | ENST00000524945 | 0 | 8 | 221_260 | 302.3333333333333 | 688.0 | Topological domain | Extracellular | |
Tgene | SLCO5A1 | chr8:52758221 | chr8:70674110 | ENST00000524945 | 0 | 8 | 291_309 | 302.3333333333333 | 688.0 | Topological domain | Cytoplasmic | |
Tgene | SLCO5A1 | chr8:52758221 | chr8:70674110 | ENST00000530307 | 0 | 8 | 150_168 | 302.3333333333333 | 794.0 | Topological domain | Extracellular | |
Tgene | SLCO5A1 | chr8:52758221 | chr8:70674110 | ENST00000530307 | 0 | 8 | 190_195 | 302.3333333333333 | 794.0 | Topological domain | Cytoplasmic | |
Tgene | SLCO5A1 | chr8:52758221 | chr8:70674110 | ENST00000530307 | 0 | 8 | 1_128 | 302.3333333333333 | 794.0 | Topological domain | Cytoplasmic | |
Tgene | SLCO5A1 | chr8:52758221 | chr8:70674110 | ENST00000530307 | 0 | 8 | 221_260 | 302.3333333333333 | 794.0 | Topological domain | Extracellular | |
Tgene | SLCO5A1 | chr8:52758221 | chr8:70674110 | ENST00000530307 | 0 | 8 | 291_309 | 302.3333333333333 | 794.0 | Topological domain | Cytoplasmic | |
Tgene | SLCO5A1 | chr8:52758221 | chr8:70674110 | ENST00000260126 | 1 | 10 | 129_149 | 302.3333333333333 | 849.0 | Transmembrane | Helical%3B Name%3D1 | |
Tgene | SLCO5A1 | chr8:52758221 | chr8:70674110 | ENST00000260126 | 1 | 10 | 169_189 | 302.3333333333333 | 849.0 | Transmembrane | Helical%3B Name%3D2 | |
Tgene | SLCO5A1 | chr8:52758221 | chr8:70674110 | ENST00000260126 | 1 | 10 | 196_220 | 302.3333333333333 | 849.0 | Transmembrane | Helical%3B Name%3D3 | |
Tgene | SLCO5A1 | chr8:52758221 | chr8:70674110 | ENST00000260126 | 1 | 10 | 261_290 | 302.3333333333333 | 849.0 | Transmembrane | Helical%3B Name%3D4 | |
Tgene | SLCO5A1 | chr8:52758221 | chr8:70674110 | ENST00000524945 | 0 | 8 | 129_149 | 302.3333333333333 | 688.0 | Transmembrane | Helical%3B Name%3D1 | |
Tgene | SLCO5A1 | chr8:52758221 | chr8:70674110 | ENST00000524945 | 0 | 8 | 169_189 | 302.3333333333333 | 688.0 | Transmembrane | Helical%3B Name%3D2 | |
Tgene | SLCO5A1 | chr8:52758221 | chr8:70674110 | ENST00000524945 | 0 | 8 | 196_220 | 302.3333333333333 | 688.0 | Transmembrane | Helical%3B Name%3D3 | |
Tgene | SLCO5A1 | chr8:52758221 | chr8:70674110 | ENST00000524945 | 0 | 8 | 261_290 | 302.3333333333333 | 688.0 | Transmembrane | Helical%3B Name%3D4 | |
Tgene | SLCO5A1 | chr8:52758221 | chr8:70674110 | ENST00000530307 | 0 | 8 | 129_149 | 302.3333333333333 | 794.0 | Transmembrane | Helical%3B Name%3D1 | |
Tgene | SLCO5A1 | chr8:52758221 | chr8:70674110 | ENST00000530307 | 0 | 8 | 169_189 | 302.3333333333333 | 794.0 | Transmembrane | Helical%3B Name%3D2 | |
Tgene | SLCO5A1 | chr8:52758221 | chr8:70674110 | ENST00000530307 | 0 | 8 | 196_220 | 302.3333333333333 | 794.0 | Transmembrane | Helical%3B Name%3D3 | |
Tgene | SLCO5A1 | chr8:52758221 | chr8:70674110 | ENST00000530307 | 0 | 8 | 261_290 | 302.3333333333333 | 794.0 | Transmembrane | Helical%3B Name%3D4 |
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Fusion Gene Sequence for PCMTD1-SLCO5A1 |
For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones. |
>In-frame_ENST00000360540_ENST00000260126_TCGA-EE-A2MH-06A_PCMTD1_chr8_52758221_-_SLCO5A1_chr8_70674110_length(transcript)=8279nt_BP=817nt GGCGGCTCCGGAGTCCGGGAGGCTCTGGCTGCTCCAGTCGCGGGTCCGGGCCCCGCCTCTCCACTCGGCGGTGGCGTCCGTGTTGTTATT GTGGTGGTAGCGGCGTCTGGCTGCTGCGGACCCCGCCGAGTCCTAGCGCCTGGCCTGCGCGCCGCTGCCCGCGCCACAGCCCCATCACTG AGAAGAATTTTTTCACTGTATAGTTGCCTCTGCACTTAAAGCAGGCTTGGTCCATGAATCCCATGACAAGAGCTTTGAGGACATGAGGAG CATTCTTTGTTCAAACATACTGTGTTTTCCTTTGGATCACTGGATTAATTTATTTTTGGAAATCAAGTGCAATATTGGAAGCCATTTCTA CTAATTTTATTTCACTTTTAAATTTATGATTTGATTTGAATACTATCATGGGAGGAGCTGTGAGTGCTGGGGAAGATAATGATGACTTAA TTGATAATTTAAAAGAAGCTCAGTATATTCGTACTGAAAGAGTGGAGCAAGCCTTCAGAGCGATTGATCGTGGAGATTACTATTTGGAAG GCTACAGAGACAATGCTTACAAAGACTTAGCCTGGAAGCATGGAAACATCCACTTGTCAGCACCTTGCATTTATTCTGAAGTTATGGAAG CATTGAAACTTCAACCAGGATTGTCTTTTCTTAACCTGGGAAGTGGAACCGGATATTTAAGTACAATGGTGGGCTTAATTTTAGGTCCTT TTGGAATAAATCATGGGATTGAGCTTCATTCAGATGTGGTGGAATATGCCAAGGAAAAACTGGAGAGCTTCATCAAAAATAGTGATAGCT TTGATAACCATCATGTATGTCATGGGAGCACTTGGCCCTGCAGTGGGATATTTATTAGGTGGACTTCTTATTGGTTTTTATGTTGATCCC AGAAATCCTGTTCACCTTGACCAGAATGACCCTCGTTTCATTGGAAACTGGTGGAGTGGATTCCTCCTTTGTGCCATTGCAATGTTTCTT GTGATATTCCCAATGTTTACTTTCCCAAAAAAGCTTCCACCTCGACACAAGAAAAAGAAAAAGAAAAAATTTTCTGTTGATGCTGTTAGT GATGACGATGTTCTGAAGGAGAAATCAAACAACAGTGAACAAGCGGACAAAAAAGTTTCTTCGATGGGATTTGGAAAGGATGTCAGAGAC CTACCAAGAGCAGCTGTCAGGATCTTAAGCAACATGACATTCCTTTTTGTGAGTTTGTCATACACAGCTGAGAGTGCCATTGTAACTGCT TTCATTACCTTCATTCCCAAGTTCATCGAGTCACAGTTTGGTATCCCAGCCTCCAATGCCAGCATCTACACTGGGGTTATTATCGTCCCC AGTGCTGGTGTTGGTATTGTCCTCGGAGGCTACATTATAAAAAAATTGAAACTTGGTGCCAGAGAATCTGCAAAACTAGCAATGATCTGC AGTGGTGTGTCTTTACTATGTTTTTCAACCCTATTTATTGTTGGATGTGAAAGCATTAATCTAGGGGGCATAAACATCCCTTATACAACA GGACCTTCTCTCACCATGCCCCATAGGAATCTGACAGGAAGCTGCAACGTTAATTGTGGTTGTAAAATACACGAGTATGAGCCAGTCTGT GGATCAGATGGAATTACATACTTTAACCCTTGTCTGGCTGGCTGTGTTAATAGTGGTAATCTTAGCACTGGGATACGGAATTATACAGAA TGCACCTGTGTCCAAAGTCGCCAAGTGATCACTCCACCCACCGTGGGACAGCGAAGTCAGCTCCGTGTGGTTATTGTCAAGACTTATCTC AATGAGAACGGCTATGCTGTGTCTGGGAAATGTAAACGGACCTGCAATACTCTTATCCCATTCTTAGTTTTTCTTTTCATAGTCACCTTC ATCACAGCATGTGCCCAACCATCAGCTATCATAGTAACACTCAGGTCCGTAGAAGATGAGGAGAGACCTTTTGCACTGGGAATGCAGTTT GTTTTGTTGCGAACACTTGCATACATTCCTACTCCAATCTACTTTGGAGCAGTCATTGACACCACCTGCATGCTCTGGCAACAGGAATGT GGTGTGCAGGGTTCTTGCTGGGAGTACAACGTGACGTCGTTTCGTTTTGTGTATTTTGGTTTGGCTGCCGGCCTCAAATTCGTTGGGTTT ATTTTTATTTTTCTGGCCTGGTACTCCATAAAATACAAGGAGGATGGACTGCAGAGGCGGAGGCAGAGAGAATTTCCCCTGAGCACCGTG AGTGAGAGAGTGGGACACCCCGACAATGCCCGGACTAGATCTTGCCCAGCTTTCAGCACCCAGGGAGAATTCCACGAAGAGACTGGCCTG CAAAAAGGGATCCAGTGCGCAGCACAGACCTACCCGGGGCCCTTCCCAGAAGCAATAAGTTCCTCTGCGGACCCGGGGCTGGAAGAGAGC CCCGCTGCCTTGGAGCCGCCCTCCTGAAGCTTGAAAATGGAAGAATTTAGTTTTGTTGGTTGAATTGAAAATGGCGACTTGAGAAACAAC TGTGCCTTCTTTTCTTTCTTTCTTTTTTTTAACCTCTACAGACACAATCCTCAAACCAACAAAACTCAGTATACACAGCCGCTATTCATT GAGGGCTGGATACCTCAACAAGACTGAGAGCCTTTCCCCGCTTCTCTCCAAGAAGGAGACGTTCAGCTAGATTTGTTCCCATTTCCGTTG TGTTAATTCAAAGCTCATGCTCCCCTACGGTACAGGCTGAGGTACACGGTTAGCAAAACCATGGGAAGGGGAATGGCGGTGCATATCATT AACTAACACTCCAAACAAAGGTGAGCTTGCCCAGGACTTGGCATTTCCAAATCAAAGTTTTTAGATATGAACACCTACTGTGAGTTCTGC TACAAAGCACAAATGAATTTGTCTCAACTATGCAATTTGATTGGAAAAATGTATGTGCAGCATGTTACATTTACTTTCACGGAATAAAGC AGATATGTTTCTGAAAAGAGGAAGCTGAACTTTCCATCCAGTACTGTTGATAGCATTTTAAGCCATAGCAGTTATAAATCAGGTAGAGTT TTTCAAATGCTTCAGAGGAACCATAGGCATAGTGTGATAGAAGGAACAGCTACTTCAGGTCGTAGGACACATTCTCTTTCAGTCTGCCTG CCCCATCCTAAGATAAAGAGGCTGCTGAATCATAAATCTGATAGCTTAAATATAAACTCCAGTATTCTTTTGTAAGGAGCATTAAAACTA GTGTGCTAAACAATATGGCTAGAAACTGTAATTTGAAATGCATAATAGGGAAAGAAAATGACAGCTTTCTCATCCAAGAAAATTGTTGCA GAAATTTTCTTTAGCTCTACGGGCCCACAAAGTCACTGGGAAAAGTCCCACCTGAGTATTTTAGTTACATCTTGAAAGCACTGGCAAATC TGTGTGGTTTTCTTTTTTTCTGGACAGAAAATTGCTGTGGTTGCTCCTGAAAATGCATACTTATATCAGGAAATCTGTGCCTGGGATATG AAAATCACTTAGAATACAGGAGGAGGGAGATCTGTGTTCTGGAACAGAATATGATCTTAAGTAATTGTTGAAAATTATGTAAAATAAACC AGTCCATCCGAAAGAACCCTACTTTATCAGAGATAGAATCGTTTTACACTACCCTTTGATTCCCCCTTACTGTAAGTTTCTGGCAGTGAT TCTGAGAGAGGATTTTTCTGTTCCTAAATGCACTTTGGGTTCATTACCCATCATTCTTTTCAGTACCTCCCAGCACATCACTTTGAAGTA AGCATCATAGAGAATGCTTTCTACATGGCTCTTAAGATAGATGCTTCCTGACGGCGCTAACGGATTGACAGCAAGTTAGCTCAGGGGTTC TGGCTGCCAGGGAGTGTAAGGGCCAAATGCTGATATAATTGTGAACTTTTTCTGCCAAGGAGCCTATGGTCATGGAGGGCTAATTAGGGA AATGTTTTTCTCTTCTGGTTTACCCTTATCCCCAGAAGAGATGTGATTGACAGACTGTTCCATGATTCAGGCTTCTGCTCTCCAACCTTG CTTGACTGCACAGGTGGAATTGTGCAAATACTCCTGGGTATAAGGCTGTTTCCCTCTCTTCCTAGGAATGACATTGGTCAAACAGTTCTC TTGGTTGCATACAGTTTGTGTTAACACTGTTAGACTGAACAATGTCTACAAGGGGTGGAGCTAGTGGTCTCAGGGGCTAAGGACTTCCCT CTGGTTCCTGGGCTTGGCTCTCGGGGAGGTGAGGATTCTTGCTTGGTTAAGACTGTAATTGCACTGGTAATTGTCAGACTCTGGCCAATG TGGCATATATTGGAAGTATTCAAAAAATCTTGCTGATTAAGAAAACCTTGCTGATTGAACTAGTGTCTCCTTTGGGGCCTCAGGGTTCCC CTTTACCCTCTATGGGAGAGCTCTGATCCTTTAAAGGAGAAATTTTCCTTTGGTGTGGGAGTTAAAGATATGTAGATTGGAGAGGTGTGG TGTTTTCTTAATTTTCTTCTGATCATTAAGATACTGCATTGAGAGAATTTTGGTGGGATTGGCACTTTTTCTGGTAGCTAAGATTGCTGG ACTCAGCACGGAGTAGTTAGAGAGCCCCCTTACTCCCTTTGCTGCCATGAACAGTCATCCAGTTTGGCGATCACTGATCAGGTGCCAGGT ATCTTCAGGTGTCATATTACCTGATTACCATCTGCCACTCCATAAAATCCTTTGGGATGATTGGGCCAGAACTCAAAGAAATGGGCCTGA AATGTGCACCACAGTGTTAATATTGTACTTCCTCAAGTATCTGCTCCTTATAAATAGCAGGTATTTCATTAATGTGTTGTTGGTGAATGT AGACTAAGTAGTAAAAATCATGAGAAAATAAAGCTTTGGAATATGTACCAATTAAGAGTGGTTCACAAAATACTTGGGGCTATGGTAGCA TCACTGGAATATTACATAGCCAACTGAAGTGACTGTTTTGTAGATGATACCATTTAATTGTATATATAGGGTCTTATATGTTTCTTAATA AATTGATCCCATTACTTTATAGTCACAGCTCCTATTAGAAGTTTTAATGAAGACTCTCCATGAGCTTAGGCTTCAAATTACTTGTTTTGG AAAAGGTCATCTTGTCCTTTATAAACTGTAAATTCATATATTATTTAGCTTTAATATGCAAATACAATATCCTTGAGTTCATCCTATTAA TTTAGAAACTCCCAGGAGGTAAGATGGGTGGTTGGAGCGCATTCTTTGGTTATTTTCATTAGCATTAAGTCCTTATTCTTTATAGGTGGA TTTAATTCTTGAAAATATTCAAAAGTAATTCAGAGTCAAGGTGTTGGGGATGGAGAGAAAGGAGGAACAGAGAGGAAAAAAATTAGCATT TGTTGAGTGTTGACGATTTGTAGAGCATTTTGACAAGCACTTAATATACATCATCATTCATTTTGATCCTCTTAATTACCTTGCAAAGAT TTGATTCTTTTTTTTTTTTTGAGACAGAGTCTTGCTCTGTCACCCAGGCTGGAGTGCAGTGGCTTAATCTCAGCTCACTGCAACCTCCGC TTCCTGGGTTCAAGTGATTCTCCTGTTTCAGTCTCCTGAGGAACTGGGATTAAGGTGTGTGCCACCACACCCAGCTATTTTTTTTCTATT TTTAGTAGAGAGAGGGTTTCACCATGTTGGCCAGGCTGGTCTTGAACTCCTGACCTCAAGTGATCCACCTGCCTTGGCCTCTCAAAGTGC TGGGATTACAGGCATGAGCCACCATGCCCGGCTGATTTTATTATTTTTTTAAAAAACATATGAAACCAAGACTCAGAGAAGTAAAATAAC TCATTTAGGATCATACAGAATGGTAAAGTCAGGATTCAGACATAGATTTCTCTCACTCCATTATTCATTTTTTACACTACGCAATGTATA CAATAGCTTTTGGTTAACAAAGGCAAGGTGACTATAAAATCGTGAGATTAAAGCATTTCAATTTTTTGATATATTACCGTTTATGAAGAG TAGAGAGGTTTTTTTGTGTAAATAAAAAAAACTGTAGGAAACATCTGTAGGAAATATCAAGATTTAATGTTTAACTAGATTTTCAAGGTA AATTTACATTTATTTAGCTAAGTGTTATATTAAAGTTATTTGTCATAACATACCTCAAATATTTATTTATAGTTCATATTTAATACAGAA CAAATCTAGTCTTCGTGTTAACATCGGGTCTCGGCAGAGTTTCTGAAATGAAACATTATGAAGAAAGGTAGTTCAGATTTGTTGAATCTG AGCTTTAGGGATTTCAAGTGTATTTTTTTTTATTTTCCTCTTTCAGAATATTAACATCTCTATTAGTTTTTTGATGAATATGAGTTTTAA GATTCCTAATAAGGGTTTTAAGTGAACACACATAAAATACATATCAAACCACTGATCCCGATTGTTCCCTTTAGTCGCTGTGACATTGTT ACCTTTAGTGGCATGCACTTGGAAATGTCAGCCTTCAGAGAAGGGGGAGTTACATGGAGTAAGGCCTCATGGATGTCATGGTGGTCCTCC ATGTTCACCAACCACCAAGAAAATTCTTCTTCAGTCCACAATTCCAGCTTGCGCTCTTTGGTGCACTTGGAGCCAGAAAGTGTCTTTTTG GCCCTGTTTTGTAGAAACCGTGCATGTACCAAAGAGAAACTTTAGAGTTTGGATGGAGCTGAAGCATTGATGGGAATTCCCTAGTGCACC CAGGAGCAGGAGGCAAGCCCAAGCCTCGGGTGGTAGCCAATTATATTTTGTGATCGTGTATGTACTTAAAACATCAGAGATGACACAGCA CATGAATATAACTATTGATATGTAGGTGCATACTGAGTATTCTAAGTAGCAGATAGATACCAAAATACTGTATAATCCCAGAATTGCCTA AACTGCAGGTTTGCTAGTTCTCTGTTATACAGACCAGTAGGTAGCCTTTCCACACATTTGTGTTTTCTCTTCCATAATAAGAGAGTGCTG CGGCTGGCAGGCAAAGGTAGTTGCCTCATGCACTTTATCTTTTTGTCTTTTTCTCTTCTTCATCTTTTGGGATGCTGCTGGCTGTATCTG TCCCAAACTTCTTGTTGCATTAGAATCAGATCTGTGTATGTTTGAGGAGGTTTTATTTTAAAGACTTCAGTTTTACTCAGCTCTAGGAAG GGTCAAATACAACAACAACAACAAAAAACAGAAAACAAAAAACCCTCCCTAGGTGTTTGCTTTTGCAACATTAAAAAAAATGCCTTGGTG CTAAAAAGTATTTAATGACGCATGTTCACCACTAAAAAGCGCCACTGAATTCACAGTATTTCACTGCTAAGTGGCTGCATGTACTTTGTG TTTGGAAATCTGAAGAATTTTCCAGAAAACAAGCATCCATTACTCTCATTTCAACAGTTACTCCATCTATGCTGCAAAAATGAAGCGTGA AAGGGGGGATACTTTTCTATGGAATACTCAGTGCTTTTGATATTTATTTTAGCAAGAATAATCAGATGCCAAAAATAATTTCAGAGAAAG GTAGAAAAAATATTTCAGGTAACCTTTTCTTATTTCTTCTCCAAAAAGATTACACCCATGTAAGGTATTTTTAACACTGGGGTTTTGAAG GTGTTATCTTTTCTGGTATCCTATCACTACATGTTAAAATTGAAGGAGAAAATATTATTGAAACTAAAGTAATTGCAGGGACACATTAAA CCAAAGGGGTGAACAAAAGAGGTTTAAAGTTTGTATCTAGAAATGAAAAATAAGAATCATTGGTAAGACTAGTACCGATTATTGGCAATT GGTAATTGATAATTGGTAAGAGTAGTACCAAATAATGGGCATTTTTCTTAAAATACATACCTCTACCCCAAACCCCAAATGTTAATTTAG AATCCTGAAACAGGCAAGTCAGGCTCTGACTCTTTTGTTTAAGGAAATGTAATACTGTGTCAACTAAACTGGCATTAGGTTCTTAGTGGA GTGTGTGTTTGTGTGTGTGTGTGTGTGTTTTGTGTAGAGGTATGTTTGTGATGAAAGGTTTTGCACTGTTGCATAAAGAAGTTTGATTTT GTGATTTTTAAAATGATATTCATTTGGAGACTTTTTAAGGTAATTTAAAAGATGTATAATTTCCGTGTGTTTAATGAAATCTGTTGTCGA >In-frame_ENST00000360540_ENST00000260126_TCGA-EE-A2MH-06A_PCMTD1_chr8_52758221_-_SLCO5A1_chr8_70674110_length(amino acids)=574AA_start in transcript=732_stop in transcript=2456 MGLSFIQMWWNMPRKNWRASSKIVIALITIMYVMGALGPAVGYLLGGLLIGFYVDPRNPVHLDQNDPRFIGNWWSGFLLCAIAMFLVIFP MFTFPKKLPPRHKKKKKKKFSVDAVSDDDVLKEKSNNSEQADKKVSSMGFGKDVRDLPRAAVRILSNMTFLFVSLSYTAESAIVTAFITF IPKFIESQFGIPASNASIYTGVIIVPSAGVGIVLGGYIIKKLKLGARESAKLAMICSGVSLLCFSTLFIVGCESINLGGINIPYTTGPSL TMPHRNLTGSCNVNCGCKIHEYEPVCGSDGITYFNPCLAGCVNSGNLSTGIRNYTECTCVQSRQVITPPTVGQRSQLRVVIVKTYLNENG YAVSGKCKRTCNTLIPFLVFLFIVTFITACAQPSAIIVTLRSVEDEERPFALGMQFVLLRTLAYIPTPIYFGAVIDTTCMLWQQECGVQG SCWEYNVTSFRFVYFGLAAGLKFVGFIFIFLAWYSIKYKEDGLQRRRQREFPLSTVSERVGHPDNARTRSCPAFSTQGEFHEETGLQKGI -------------------------------------------------------------- >In-frame_ENST00000360540_ENST00000524945_TCGA-EE-A2MH-06A_PCMTD1_chr8_52758221_-_SLCO5A1_chr8_70674110_length(transcript)=2918nt_BP=817nt GGCGGCTCCGGAGTCCGGGAGGCTCTGGCTGCTCCAGTCGCGGGTCCGGGCCCCGCCTCTCCACTCGGCGGTGGCGTCCGTGTTGTTATT GTGGTGGTAGCGGCGTCTGGCTGCTGCGGACCCCGCCGAGTCCTAGCGCCTGGCCTGCGCGCCGCTGCCCGCGCCACAGCCCCATCACTG AGAAGAATTTTTTCACTGTATAGTTGCCTCTGCACTTAAAGCAGGCTTGGTCCATGAATCCCATGACAAGAGCTTTGAGGACATGAGGAG CATTCTTTGTTCAAACATACTGTGTTTTCCTTTGGATCACTGGATTAATTTATTTTTGGAAATCAAGTGCAATATTGGAAGCCATTTCTA CTAATTTTATTTCACTTTTAAATTTATGATTTGATTTGAATACTATCATGGGAGGAGCTGTGAGTGCTGGGGAAGATAATGATGACTTAA TTGATAATTTAAAAGAAGCTCAGTATATTCGTACTGAAAGAGTGGAGCAAGCCTTCAGAGCGATTGATCGTGGAGATTACTATTTGGAAG GCTACAGAGACAATGCTTACAAAGACTTAGCCTGGAAGCATGGAAACATCCACTTGTCAGCACCTTGCATTTATTCTGAAGTTATGGAAG CATTGAAACTTCAACCAGGATTGTCTTTTCTTAACCTGGGAAGTGGAACCGGATATTTAAGTACAATGGTGGGCTTAATTTTAGGTCCTT TTGGAATAAATCATGGGATTGAGCTTCATTCAGATGTGGTGGAATATGCCAAGGAAAAACTGGAGAGCTTCATCAAAAATAGTGATAGCT TTGATAACCATCATGTATGTCATGGGAGCACTTGGCCCTGCAGTGGGATATTTATTAGGTGGACTTCTTATTGGTTTTTATGTTGATCCC AGAAATCCTGTTCACCTTGACCAGAATGACCCTCGTTTCATTGGAAACTGGTGGAGTGGATTCCTCCTTTGTGCCATTGCAATGTTTCTT GTGATATTCCCAATGTTTACTTTCCCAAAAAAGCTTCCACCTCGACACAAGAAAAAGAAAAAGAAAAAATTTTCTGTTGATGCTGTTAGT GATGACGATGTTCTGAAGGAGAAATCAAACAACAGTGAACAAGCGGACAAAAAAGTTTCTTCGATGGGATTTGGAAAGGATGTCAGAGAC CTACCAAGAGCAGCTGTCAGGATCTTAAGCAACATGACATTCCTTTTTGTGAGTTTGTCATACACAGCTGAGAGTGCCATTGTAACTGCT TTCATTACCTTCATTCCCAAGTTCATCGAGTCACAGTTTGGTATCCCAGCCTCCAATGCCAGCATCTACACTGGGGTTATTATCGTCCCC AGTGCTGGTGTTGGTATTGTCCTCGGAGGCTACATTATAAAAAAATTGAAACTTGGTGCCAGAGAATCTGCAAAACTAGCAATGATCTGC AGTGGTGTGTCTTTACTATGTTTTTCAACCCTATTTATTGTTGGATGTGAAAGCATTAATCTAGGGGGCATAAACATCCCTTATACAACA GGACCTTCTCTCACCATGCCCCATAGGAATCTGACAGGAAGCTGCAACGTTAATTGTGGTTGTAAAATACACGAGTATGAGCCAGTCTGT GGATCAGATGGAATTACATACTTTAACCCTTGTCTGGCTGGCTGTGTTAATAGTGGTAATCTTAGCACTGGGATACGGAATTATACAGAA TGCACCTGTGTCCAAAGTCGCCAAGTGATCACTCCACCCACCGTGGGACAGCGAAGTCAGCTCCGTGTGGTTATTGTCAAGACTTATCTC AATGAGAACGGCTATGCTGTGTCTGGGAAATGTAAACGGACCTGCAATACTCTTATCCCATTCTTAGTTTTTCTTTTCATAGTCACCTTC ATCACAGCATGTGCCCAACCATCAGCTATCATAGTAACACTCAGCATACATTCCTACTCCAATCTACTTTGGAGCAGTCATTGACACCAC CTGCATGCTCTGGCAACAGGAATGTGGTGTGCAGGGTTCTTGCTGGGAGTACAACGTGACGTCGTTTCGTTTTGTGTATTTTGGTTTGGC TGCCGGCCTCAAATTCGTTGGGTTTATTTTTATTTTTCTGGCCTGGTACTCCATAAAATACAAGGAGGATGGACTGCAGAGGCGGAGGCA GAGAGAATTTCCCCTGAGCACCGTGAGTGAGAGAGTGGGACACCCCGACAATGCCCGGACTAGATCTTGCCCAGCTTTCAGCACCCAGGG AGAATTCCACGAAGAGACTGGCCTGCAAAAAGGGATCCAGTGCGCAGCACAGACCTACCCGGGGCCCTTCCCAGAAGCAATAAGTTCCTC TGCGGACCCGGGGCTGGAAGAGAGCCCCGCTGCCTTGGAGCCGCCCTCCTGAAGCTTGAAAATGGAAGAATTTAGTTTTGTTGGTTGAAT TGAAAATGGCGACTTGAGAAACAACTGTGCCTTCTTTTCTTTCTTTCTTTTTTTTAACCTCTACAGACACAATCCTCAAACCAACAAAAC TCAGTATACACAGCCGCTATTCATTGAGGGCTGGATACCTCAACAAGACTGAGAGCCTTTCCCCGCTTCTCTCCAAGAAGGAGACGTTCA GCTAGATTTGTTCCCATTTCCGTTGTGTTAATTCAAAGCTCATGCTCCCCTACGGTACAGGCTGAGGTACACGGTTAGCAAAACCATGGG AAGGGGAATGGCGGTGCATATCATTAACTAACACTCCAAACAAAGGTGAGCTTGCCCAGGACTTGGCATTTCCAAATCAAAGTTTTTAGA TATGAACACCTACTGTGAGTTCTGCTACAAAGCACAAATGAATTTGTCTCAACTATGCAATTTGATTGGAAAAATGTATGTGCAGCATGT >In-frame_ENST00000360540_ENST00000524945_TCGA-EE-A2MH-06A_PCMTD1_chr8_52758221_-_SLCO5A1_chr8_70674110_length(amino acids)=413AA_start in transcript=732_stop in transcript=1973 MGLSFIQMWWNMPRKNWRASSKIVIALITIMYVMGALGPAVGYLLGGLLIGFYVDPRNPVHLDQNDPRFIGNWWSGFLLCAIAMFLVIFP MFTFPKKLPPRHKKKKKKKFSVDAVSDDDVLKEKSNNSEQADKKVSSMGFGKDVRDLPRAAVRILSNMTFLFVSLSYTAESAIVTAFITF IPKFIESQFGIPASNASIYTGVIIVPSAGVGIVLGGYIIKKLKLGARESAKLAMICSGVSLLCFSTLFIVGCESINLGGINIPYTTGPSL TMPHRNLTGSCNVNCGCKIHEYEPVCGSDGITYFNPCLAGCVNSGNLSTGIRNYTECTCVQSRQVITPPTVGQRSQLRVVIVKTYLNENG -------------------------------------------------------------- >In-frame_ENST00000360540_ENST00000530307_TCGA-EE-A2MH-06A_PCMTD1_chr8_52758221_-_SLCO5A1_chr8_70674110_length(transcript)=2498nt_BP=817nt GGCGGCTCCGGAGTCCGGGAGGCTCTGGCTGCTCCAGTCGCGGGTCCGGGCCCCGCCTCTCCACTCGGCGGTGGCGTCCGTGTTGTTATT GTGGTGGTAGCGGCGTCTGGCTGCTGCGGACCCCGCCGAGTCCTAGCGCCTGGCCTGCGCGCCGCTGCCCGCGCCACAGCCCCATCACTG AGAAGAATTTTTTCACTGTATAGTTGCCTCTGCACTTAAAGCAGGCTTGGTCCATGAATCCCATGACAAGAGCTTTGAGGACATGAGGAG CATTCTTTGTTCAAACATACTGTGTTTTCCTTTGGATCACTGGATTAATTTATTTTTGGAAATCAAGTGCAATATTGGAAGCCATTTCTA CTAATTTTATTTCACTTTTAAATTTATGATTTGATTTGAATACTATCATGGGAGGAGCTGTGAGTGCTGGGGAAGATAATGATGACTTAA TTGATAATTTAAAAGAAGCTCAGTATATTCGTACTGAAAGAGTGGAGCAAGCCTTCAGAGCGATTGATCGTGGAGATTACTATTTGGAAG GCTACAGAGACAATGCTTACAAAGACTTAGCCTGGAAGCATGGAAACATCCACTTGTCAGCACCTTGCATTTATTCTGAAGTTATGGAAG CATTGAAACTTCAACCAGGATTGTCTTTTCTTAACCTGGGAAGTGGAACCGGATATTTAAGTACAATGGTGGGCTTAATTTTAGGTCCTT TTGGAATAAATCATGGGATTGAGCTTCATTCAGATGTGGTGGAATATGCCAAGGAAAAACTGGAGAGCTTCATCAAAAATAGTGATAGCT TTGATAACCATCATGTATGTCATGGGAGCACTTGGCCCTGCAGTGGGATATTTATTAGGTGGACTTCTTATTGGTTTTTATGTTGATCCC AGAAATCCTGTTCACCTTGACCAGAATGACCCTCGTTTCATTGGAAACTGGTGGAGTGGATTCCTCCTTTGTGCCATTGCAATGTTTCTT GTGATATTCCCAATGTTTACTTTCCCAAAAAAGCTTCCACCTCGACACAAGAAAAAGAAAAAGAAAAAATTTTCTGTTGATGCTGTTAGT GATGACGATGTTCTGAAGGAGAAATCAAACAACAGTGAACAAGCGGACAAAAAAGTTTCTTCGATGGGATTTGGAAAGGATGTCAGAGGG GTTATTATCGTCCCCAGTGCTGGTGTTGGTATTGTCCTCGGAGGCTACATTATAAAAAAATTGAAACTTGGTGCCAGAGAATCTGCAAAA CTAGCAATGATCTGCAGTGGTGTGTCTTTACTATGTTTTTCAACCCTATTTATTGTTGGATGTGAAAGCATTAATCTAGGGGGCATAAAC ATCCCTTATACAACAGGACCTTCTCTCACCATGCCCCATAGGAATCTGACAGGAAGCTGCAACGTTAATTGTGGTTGTAAAATACACGAG TATGAGCCAGTCTGTGGATCAGATGGAATTACATACTTTAACCCTTGTCTGGCTGGCTGTGTTAATAGTGGTAATCTTAGCACTGGGATA CGGAATTATACAGAATGCACCTGTGTCCAAAGTCGCCAAGTGATCACTCCACCCACCGTGGGACAGCGAAGTCAGCTCCGTGTGGTTATT GTCAAGACTTATCTCAATGAGAACGGCTATGCTGTGTCTGGGAAATGTAAACGGACCTGCAATACTCTTATCCCATTCTTAGTTTTTCTT TTCATAGTCACCTTCATCACAGCATGTGCCCAACCATCAGCTATCATAGTAACACTCAGGTCCGTAGAAGATGAGGAGAGACCTTTTGCA CTGGGAATGCAGTTTGTTTTGTTGCGAACACTTGCATACATTCCTACTCCAATCTACTTTGGAGCAGTCATTGACACCACCTGCATGCTC TGGCAACAGGAATGTGGTGTGCAGGGTTCTTGCTGGGAGTACAACGTGACGTCGTTTCGTTTTGTGTATTTTGGTTTGGCTGCCGGCCTC AAATTCGTTGGGTTTATTTTTATTTTTCTGGCCTGGTACTCCATAAAATACAAGGAGGATGGACTGCAGAGGCGGAGGCAGAGAGAATTT CCCCTGAGCACCGTGAGTGAGAGAGTGGGACACCCCGACAATGCCCGGACTAGATCTTGCCCAGCTTTCAGCACCCAGGGAGAATTCCAC GAAGAGACTGGCCTGCAAAAAGGGATCCAGTGCGCAGCACAGACCTACCCGGGGCCCTTCCCAGAAGCAATAAGTTCCTCTGCGGACCCG GGGCTGGAAGAGAGCCCCGCTGCCTTGGAGCCGCCCTCCTGAAGCTTGAAAATGGAAGAATTTAGTTTTGTTGGTTGAATTGAAAATGGC GACTTGAGAAACAACTGTGCCTTCTTTTCTTTCTTTCTTTTTTTTAACCTCTACAGACACAATCCTCAAACCAACAAAACTCAGTATACA >In-frame_ENST00000360540_ENST00000530307_TCGA-EE-A2MH-06A_PCMTD1_chr8_52758221_-_SLCO5A1_chr8_70674110_length(amino acids)=519AA_start in transcript=732_stop in transcript=2291 MGLSFIQMWWNMPRKNWRASSKIVIALITIMYVMGALGPAVGYLLGGLLIGFYVDPRNPVHLDQNDPRFIGNWWSGFLLCAIAMFLVIFP MFTFPKKLPPRHKKKKKKKFSVDAVSDDDVLKEKSNNSEQADKKVSSMGFGKDVRGVIIVPSAGVGIVLGGYIIKKLKLGARESAKLAMI CSGVSLLCFSTLFIVGCESINLGGINIPYTTGPSLTMPHRNLTGSCNVNCGCKIHEYEPVCGSDGITYFNPCLAGCVNSGNLSTGIRNYT ECTCVQSRQVITPPTVGQRSQLRVVIVKTYLNENGYAVSGKCKRTCNTLIPFLVFLFIVTFITACAQPSAIIVTLRSVEDEERPFALGMQ FVLLRTLAYIPTPIYFGAVIDTTCMLWQQECGVQGSCWEYNVTSFRFVYFGLAAGLKFVGFIFIFLAWYSIKYKEDGLQRRRQREFPLST -------------------------------------------------------------- |
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Fusion Gene PPI Analysis for PCMTD1-SLCO5A1 |
Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in |
Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
Hgene | Hgene's interactors | Tgene | Tgene's interactors |
- Retained PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
- Lost PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
- Retained PPIs, but lost function due to frame-shift fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Related Drugs for PCMTD1-SLCO5A1 |
Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.8 2021-05-08) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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Related Diseases for PCMTD1-SLCO5A1 |
Diseases associated with fusion partners. (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Tgene | SLCO5A1 | C1838162 | Mesomelia-synostoses syndrome | 1 | GENOMICS_ENGLAND |