|
||||||
|
 | Fusion Gene Summary |
| Fusion Gene ORF analysis |
| Fusion Genomic Features |
| Fusion Protein Features |
| Fusion Gene Sequence |
| Fusion Gene PPI analysis |
| Related Drugs |
| Related Diseases |
Fusion gene:PDE5A-C4orf3 (FusionGDB2 ID:63365) |
Fusion Gene Summary for PDE5A-C4orf3 |
 Fusion gene summary |
| Fusion gene information | Fusion gene name: PDE5A-C4orf3 | Fusion gene ID: 63365 | Hgene | Tgene | Gene symbol | PDE5A | C4orf3 | Gene ID | 8654 | 401152 |
| Gene name | phosphodiesterase 5A | chromosome 4 open reading frame 3 | |
| Synonyms | CGB-PDE|CN5A|PDE5 | ALN|HCVFTP1 | |
| Cytomap | 4q26 | 4q26 | |
| Type of gene | protein-coding | protein-coding | |
| Description | cGMP-specific 3',5'-cyclic phosphodiesterasecGMP-binding cGMP-specific 3',5'-cyclic nucleotide phosphodiesterasecGMP-specific phosphodiesterase PDE5A2cGMP-specific phosphodiesterase type 5Aphosphodiesterase 5A, cGMP-specificphosphodiesterase isozyme | uncharacterized protein C4orf3HCV F-transactivated protein 1another-regulinhepatitis C virus F protein-transactivated protein 1 | |
| Modification date | 20200313 | 20200313 | |
| UniProtAcc | . | Q96KX1 | |
| Ensembl transtripts involved in fusion gene | ENST00000354960, ENST00000394439, ENST00000264805, ENST00000512739, | ENST00000399075, ENST00000504110, | |
| Fusion gene scores | * DoF score | 5 X 5 X 2=50 | 2 X 2 X 2=8 |
| # samples | 5 | 2 | |
| ** MAII score | log2(5/50*10)=0 | log2(2/8*10)=1.32192809488736 | |
| Context | PubMed: PDE5A [Title/Abstract] AND C4orf3 [Title/Abstract] AND fusion [Title/Abstract] | ||
| Most frequent breakpoint | PDE5A(120517678)-C4orf3(120219934), # samples:2 | ||
| Anticipated loss of major functional domain due to fusion event. | PDE5A-C4orf3 seems lost the major protein functional domain in Hgene partner, which is a cell metabolism gene due to the frame-shifted ORF. PDE5A-C4orf3 seems lost the major protein functional domain in Hgene partner, which is a IUPHAR drug target due to the frame-shifted ORF. | ||
| * DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
| Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Partner | Gene | GO ID | GO term | PubMed ID |
| Fusion gene breakpoints across PDE5A (5'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
| Fusion gene breakpoints across C4orf3 (3'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
| Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| Source | Disease | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| ChimerDB4 | HNSC | TCGA-CV-7406-01A | PDE5A | chr4 | 120517678 | - | C4orf3 | chr4 | 120219934 | - |
| ChimerDB4 | HNSC | TCGA-CV-7406 | PDE5A | chr4 | 120517678 | - | C4orf3 | chr4 | 120219934 | - |
Top |
Fusion Gene ORF analysis for PDE5A-C4orf3 |
| Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| In-frame | ENST00000354960 | ENST00000399075 | PDE5A | chr4 | 120517678 | - | C4orf3 | chr4 | 120219934 | - |
| Frame-shift | ENST00000354960 | ENST00000504110 | PDE5A | chr4 | 120517678 | - | C4orf3 | chr4 | 120219934 | - |
| In-frame | ENST00000394439 | ENST00000399075 | PDE5A | chr4 | 120517678 | - | C4orf3 | chr4 | 120219934 | - |
| Frame-shift | ENST00000394439 | ENST00000504110 | PDE5A | chr4 | 120517678 | - | C4orf3 | chr4 | 120219934 | - |
| In-frame | ENST00000264805 | ENST00000399075 | PDE5A | chr4 | 120517678 | - | C4orf3 | chr4 | 120219934 | - |
| Frame-shift | ENST00000264805 | ENST00000504110 | PDE5A | chr4 | 120517678 | - | C4orf3 | chr4 | 120219934 | - |
| intron-3CDS | ENST00000512739 | ENST00000399075 | PDE5A | chr4 | 120517678 | - | C4orf3 | chr4 | 120219934 | - |
| intron-3CDS | ENST00000512739 | ENST00000504110 | PDE5A | chr4 | 120517678 | - | C4orf3 | chr4 | 120219934 | - |
| ORFfinder result based on the fusion transcript sequence of in-frame fusion genes. |
| Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | Seq length (transcript) | BP loci (transcript) | Predicted start (transcript) | Predicted stop (transcript) | Seq length (amino acids) |
| ENST00000354960 | PDE5A | chr4 | 120517678 | - | ENST00000399075 | C4orf3 | chr4 | 120219934 | - | 2879 | 1151 | 185 | 1201 | 338 |
| ENST00000394439 | PDE5A | chr4 | 120517678 | - | ENST00000399075 | C4orf3 | chr4 | 120219934 | - | 2460 | 732 | 45 | 782 | 245 |
| ENST00000264805 | PDE5A | chr4 | 120517678 | - | ENST00000399075 | C4orf3 | chr4 | 120219934 | - | 2891 | 1163 | 458 | 1213 | 251 |
| DeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated. |
| Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | No-coding score | Coding score |
| ENST00000354960 | ENST00000399075 | PDE5A | chr4 | 120517678 | - | C4orf3 | chr4 | 120219934 | - | 0.000826241 | 0.9991737 |
| ENST00000394439 | ENST00000399075 | PDE5A | chr4 | 120517678 | - | C4orf3 | chr4 | 120219934 | - | 0.001249763 | 0.9987502 |
| ENST00000264805 | ENST00000399075 | PDE5A | chr4 | 120517678 | - | C4orf3 | chr4 | 120219934 | - | 0.002349358 | 0.9976507 |
Top |
Fusion Genomic Features for PDE5A-C4orf3 |
| FusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints. |
| Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | 1-p | p (fusion gene breakpoint) |
| Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page. |
| Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page. |
Top |
Fusion Protein Features for PDE5A-C4orf3 |
| Go to FGviewer for the breakpoints of chr4:120517678-chr4:120219934 - FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels. |
 |
| Main function of each fusion partner protein. (from UniProt) |
| Hgene | Tgene |
| . | C4orf3 |
| FUNCTION: Might normally function as a transcriptional repressor. EWS-fusion-proteins (EFPS) may play a role in the tumorigenic process. They may disturb gene expression by mimicking, or interfering with the normal function of CTD-POLII within the transcription initiation complex. They may also contribute to an aberrant activation of the fusion protein target genes. |
| Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at * Minus value of BPloci means that the break pointn is located before the CDS. |
| - In-frame and retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| Hgene | PDE5A | chr4:120517678 | chr4:120219934 | ENST00000264805 | - | 3 | 21 | 10_24 | 235.0 | 834.0 | Compositional bias | Note=Poly-Gln |
| Hgene | PDE5A | chr4:120517678 | chr4:120219934 | ENST00000354960 | - | 3 | 21 | 10_24 | 277.0 | 876.0 | Compositional bias | Note=Poly-Gln |
| - In-frame and not-retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| Hgene | PDE5A | chr4:120517678 | chr4:120219934 | ENST00000264805 | - | 3 | 21 | 164_314 | 235.0 | 834.0 | Domain | Note=GAF 1 |
| Hgene | PDE5A | chr4:120517678 | chr4:120219934 | ENST00000264805 | - | 3 | 21 | 346_503 | 235.0 | 834.0 | Domain | Note=GAF 2 |
| Hgene | PDE5A | chr4:120517678 | chr4:120219934 | ENST00000264805 | - | 3 | 21 | 536_860 | 235.0 | 834.0 | Domain | PDEase |
| Hgene | PDE5A | chr4:120517678 | chr4:120219934 | ENST00000354960 | - | 3 | 21 | 164_314 | 277.0 | 876.0 | Domain | Note=GAF 1 |
| Hgene | PDE5A | chr4:120517678 | chr4:120219934 | ENST00000354960 | - | 3 | 21 | 346_503 | 277.0 | 876.0 | Domain | Note=GAF 2 |
| Hgene | PDE5A | chr4:120517678 | chr4:120219934 | ENST00000354960 | - | 3 | 21 | 536_860 | 277.0 | 876.0 | Domain | PDEase |
| Tgene | C4orf3 | chr4:120517678 | chr4:120219934 | ENST00000399075 | 1 | 3 | 45_65 | 199.66666666666666 | 200.0 | Transmembrane | Helical | |
| Tgene | C4orf3 | chr4:120517678 | chr4:120219934 | ENST00000504110 | 0 | 2 | 45_65 | 66.66666666666667 | 67.0 | Transmembrane | Helical |
Top |
Fusion Gene Sequence for PDE5A-C4orf3 |
| For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones. |
| >In-frame_ENST00000354960_ENST00000399075_TCGA-CV-7406-01A_PDE5A_chr4_120517678_-_C4orf3_chr4_120219934_length(transcript)=2879nt_BP=1151nt GCTGCCGCCGCCGCCGCCGCCTCCTGGGAACCAGGGGACTGAAGAGCCTGCGAGAGCGGAACACTGCCGGACCCCGGGTGGGGGGGGCGC AGCAGCTGCGCCTGGCCCCGCCCACCACACCTGGGCGCCCGTAGAACCGCGCGGGGCGGGGCGGGGCAGGAGGCTGGCCTGGCGCTCCGG CCGCTTTGTCGAAAGCCGGCCCGACTGGAGCAGGACGAAGGGGGAGGGTCTCGAGGCCGAGTCCTGTTCTTCTGAGGGACGGACCCCAGC TGGGGTGGAAAAGCAGTACCAGAGAGCCTCCGAGGCGCGCGGTGCCAACCATGGAGCGGGCCGGCCCCAGCTTCGGGCAGCAGCGACAGC AGCAGCAGCCCCAGCAGCAGAAGCAGCAGCAGAGGGATCAGGACTCGGTCGAAGCATGGCTGGACGATCACTGGGACTTTACCTTCTCAT ACTTTGTTAGAAAAGCCACCAGAGAAATGGTCAATGCATGGTTTGCTGAGAGAGTTCACACCATCCCTGTGTGCAAGGAAGGTATCAGAG GCCACACCGAATCTTGCTCTTGTCCCTTGCAGCAGAGTCCTCGTGCAGATAACAGTGCCCCTGGAACACCAACCAGGAAAATCTCTGCCT CTGAATTTGACCGGCCTCTTAGACCCATTGTTGTCAAGGATTCTGAGGGAACTGTGAGCTTCCTCTCTGACTCAGAAAAGAAGGAACAGA TGCCTCTAACCCCTCCAAGGTTTGATCATGATGAAGGGGACCAGTGCTCAAGACTCTTGGAATTAGTGAAGGATATTTCTAGTCATTTGG ATGTCACAGCCTTATGTCACAAAATTTTCTTGCATATCCATGGACTGATATCTGCTGACCGCTATTCCCTGTTCCTTGTCTGTGAAGACA GCTCCAATGACAAGTTTCTTATCAGCCGCCTCTTTGATGTTGCTGAAGGTTCAACACTGGAAGAAGTTTCAAATAACTGTATCCGCTTAG AATGGAACAAAGGCATTGTGGGACATGTGGCAGCGCTTGGTGAGCCCTTGAACATCAAAGATGCATATGAGGATCCTCGGTTCAATGCAG AAGTTGACCAAATTACAGGCTACAAGACACAAAGCATTCTTTGTATGCCAATTAAGAATCATAGGGAAGAGACTTGTTCGCTGATATCTA AATTAAGAAGTTGGTTCTTGAGTGAATTCTGAAAATGGCTACAAACTTCTTGAATAAAGAAGACAGGACTCTCAATAGAAGAATTTCACA TCTCCAAGGGACCCTTCCTTTCATTTTACACTTTGTTACTAATTTGCAGAACTCTATTAATTGGGTAGGATTTCACCCATTCCTAGCTAA GTTCTTAAAATTAAACCCTTTGGTTCGTGTTTAAAAACTTTCAAACATCTGATGGCTTTACAGGGGCTGAATATAAAAGCATTTGTACTT AAAGGTCTTGTGTATTCATTAAGAAATATAGTAATGTCTTTTAATGTTTTAAGAGTTGATCAGGGTTTACTATGATGCAAGTAATAGGAT GATTAATAAGGGAAGGTTTTTATGAATTCAAAAGTCAATTATTCAAAAGCAGGGAAAGATTTTGAGAGAGGGAACAAAGTATTCTTAGAT TGCGTAGAAGCTGCTAGGTTCCAGTTTTAATTTTTAGGTTTAGTTGGACTCTGTTATGAAAAGATAGGTTATGGGTGGGCGACAGGTTGA TACAGTCTTAGAAAAAGCAGGTAATATCAAAGTATTGGAAAGCTAGCATGCATGCCCTCTTACCTGGGTATCTTCCCCCTTTTTTCCTTT TAAACTCTTGAGCCTCCTATAACGAAGGATTATGTGTTTCAAACCTATTTTTTTTTTACTGTTTCATTAAGTGTGCTTGTGCCCAAAATA TTTACTTGTATAATATCTGTAACTTGCTTAAATACTTCAGCAAAGTCAGCATATTTACTCATTCAACAAATATTTGAGCCAGGCATTATT TTAGACACAGCAGTGAACAAAACAAAAAGGCATTCTTGCCTTCATGGAGCTTACATTCTTATTGTTATTTAAATCTAAATGTTATAAAAC AAGAATTTATATTCTAGGGTTGATCAGCTAGTATTTAATCAAAAAGGCCACACTCCCATAGCAGCTACTCTAAGCTGTAGTAGCTAATAA AAAATATTAATGTTGGCCGGGCACAGTGGCTCACGCCTATAATCCCAGCACTTTGGGAGGCCAAGGGTGGTAGATCACTTGAGGTCAAGA GTTGTGACACCAGCCTGGCCAACCTGGTGAAACCCTATCTCTATTAAAAAATACAAAAAAATACAAAAAAATTAGCTGGGCATGTTGGCA TGCACCTGTAGTCCCAGCTATTTGGGAGGCTGAGGCACGAGAATTGCTTGAATCCGGGAGGTGGAGGTTGCAGTGAGCCAAGATGGGGCC ACTGCACTCTAACGTGGGCAACAGAGACCCTGTCTCAAAAAGAAAATATTCCTGTTAGCCCTAAAGGCTTTACATGAGGAATGGTAGAAG TGGTCTTTTGTTTAAATTAGTTGCATTCAGCATATATGAATTGTCTTAAATATTTTGGGGATACTCCCCCGCCTTTTAAACAGGGCATAA GATCTGGTAAACTCTCTGTATATCTTCCTACCTTTCAAAATCGTTCTTAGGGTTAGTCAAGTCTGGAATATAATTGCTGACTATAAAGTT AGCAATTATGCTTTTAAGGTGTTGTCACATCAACCTAAAGAGAACCATCTATGGAAGGTATGGTTGAAACATCTGTAGGAACACAGAACT >In-frame_ENST00000354960_ENST00000399075_TCGA-CV-7406-01A_PDE5A_chr4_120517678_-_C4orf3_chr4_120219934_length(amino acids)=338AA_start in transcript=185_stop in transcript=1201 MSKAGPTGAGRRGRVSRPSPVLLRDGPQLGWKSSTREPPRRAVPTMERAGPSFGQQRQQQQPQQQKQQQRDQDSVEAWLDDHWDFTFSYF VRKATREMVNAWFAERVHTIPVCKEGIRGHTESCSCPLQQSPRADNSAPGTPTRKISASEFDRPLRPIVVKDSEGTVSFLSDSEKKEQMP LTPPRFDHDEGDQCSRLLELVKDISSHLDVTALCHKIFLHIHGLISADRYSLFLVCEDSSNDKFLISRLFDVAEGSTLEEVSNNCIRLEW -------------------------------------------------------------- >In-frame_ENST00000394439_ENST00000399075_TCGA-CV-7406-01A_PDE5A_chr4_120517678_-_C4orf3_chr4_120219934_length(transcript)=2460nt_BP=732nt GAGGGACGAGTCCACGGGACAGCCCAAAGGCAACATGACGGAACCTTGCCAAAAGAAATGGTCAATGCATGGTTTGCTGAGAGAGTTCAC ACCATCCCTGTGTGCAAGGAAGGTATCAGAGGCCACACCGAATCTTGCTCTTGTCCCTTGCAGCAGAGTCCTCGTGCAGATAACAGTGCC CCTGGAACACCAACCAGGAAAATCTCTGCCTCTGAATTTGACCGGCCTCTTAGACCCATTGTTGTCAAGGATTCTGAGGGAACTGTGAGC TTCCTCTCTGACTCAGAAAAGAAGGAACAGATGCCTCTAACCCCTCCAAGGTTTGATCATGATGAAGGGGACCAGTGCTCAAGACTCTTG GAATTAGTGAAGGATATTTCTAGTCATTTGGATGTCACAGCCTTATGTCACAAAATTTTCTTGCATATCCATGGACTGATATCTGCTGAC CGCTATTCCCTGTTCCTTGTCTGTGAAGACAGCTCCAATGACAAGTTTCTTATCAGCCGCCTCTTTGATGTTGCTGAAGGTTCAACACTG GAAGAAGTTTCAAATAACTGTATCCGCTTAGAATGGAACAAAGGCATTGTGGGACATGTGGCAGCGCTTGGTGAGCCCTTGAACATCAAA GATGCATATGAGGATCCTCGGTTCAATGCAGAAGTTGACCAAATTACAGGCTACAAGACACAAAGCATTCTTTGTATGCCAATTAAGAAT CATAGGGAAGAGACTTGTTCGCTGATATCTAAATTAAGAAGTTGGTTCTTGAGTGAATTCTGAAAATGGCTACAAACTTCTTGAATAAAG AAGACAGGACTCTCAATAGAAGAATTTCACATCTCCAAGGGACCCTTCCTTTCATTTTACACTTTGTTACTAATTTGCAGAACTCTATTA ATTGGGTAGGATTTCACCCATTCCTAGCTAAGTTCTTAAAATTAAACCCTTTGGTTCGTGTTTAAAAACTTTCAAACATCTGATGGCTTT ACAGGGGCTGAATATAAAAGCATTTGTACTTAAAGGTCTTGTGTATTCATTAAGAAATATAGTAATGTCTTTTAATGTTTTAAGAGTTGA TCAGGGTTTACTATGATGCAAGTAATAGGATGATTAATAAGGGAAGGTTTTTATGAATTCAAAAGTCAATTATTCAAAAGCAGGGAAAGA TTTTGAGAGAGGGAACAAAGTATTCTTAGATTGCGTAGAAGCTGCTAGGTTCCAGTTTTAATTTTTAGGTTTAGTTGGACTCTGTTATGA AAAGATAGGTTATGGGTGGGCGACAGGTTGATACAGTCTTAGAAAAAGCAGGTAATATCAAAGTATTGGAAAGCTAGCATGCATGCCCTC TTACCTGGGTATCTTCCCCCTTTTTTCCTTTTAAACTCTTGAGCCTCCTATAACGAAGGATTATGTGTTTCAAACCTATTTTTTTTTTAC TGTTTCATTAAGTGTGCTTGTGCCCAAAATATTTACTTGTATAATATCTGTAACTTGCTTAAATACTTCAGCAAAGTCAGCATATTTACT CATTCAACAAATATTTGAGCCAGGCATTATTTTAGACACAGCAGTGAACAAAACAAAAAGGCATTCTTGCCTTCATGGAGCTTACATTCT TATTGTTATTTAAATCTAAATGTTATAAAACAAGAATTTATATTCTAGGGTTGATCAGCTAGTATTTAATCAAAAAGGCCACACTCCCAT AGCAGCTACTCTAAGCTGTAGTAGCTAATAAAAAATATTAATGTTGGCCGGGCACAGTGGCTCACGCCTATAATCCCAGCACTTTGGGAG GCCAAGGGTGGTAGATCACTTGAGGTCAAGAGTTGTGACACCAGCCTGGCCAACCTGGTGAAACCCTATCTCTATTAAAAAATACAAAAA AATACAAAAAAATTAGCTGGGCATGTTGGCATGCACCTGTAGTCCCAGCTATTTGGGAGGCTGAGGCACGAGAATTGCTTGAATCCGGGA GGTGGAGGTTGCAGTGAGCCAAGATGGGGCCACTGCACTCTAACGTGGGCAACAGAGACCCTGTCTCAAAAAGAAAATATTCCTGTTAGC CCTAAAGGCTTTACATGAGGAATGGTAGAAGTGGTCTTTTGTTTAAATTAGTTGCATTCAGCATATATGAATTGTCTTAAATATTTTGGG GATACTCCCCCGCCTTTTAAACAGGGCATAAGATCTGGTAAACTCTCTGTATATCTTCCTACCTTTCAAAATCGTTCTTAGGGTTAGTCA AGTCTGGAATATAATTGCTGACTATAAAGTTAGCAATTATGCTTTTAAGGTGTTGTCACATCAACCTAAAGAGAACCATCTATGGAAGGT ATGGTTGAAACATCTGTAGGAACACAGAACTGGGATTTCACTGAGTTTACCAAATCAACTGTGTGAACTGTTTCTGCACTGCTTGCTAAT >In-frame_ENST00000394439_ENST00000399075_TCGA-CV-7406-01A_PDE5A_chr4_120517678_-_C4orf3_chr4_120219934_length(amino acids)=245AA_start in transcript=45_stop in transcript=782 MPKEMVNAWFAERVHTIPVCKEGIRGHTESCSCPLQQSPRADNSAPGTPTRKISASEFDRPLRPIVVKDSEGTVSFLSDSEKKEQMPLTP PRFDHDEGDQCSRLLELVKDISSHLDVTALCHKIFLHIHGLISADRYSLFLVCEDSSNDKFLISRLFDVAEGSTLEEVSNNCIRLEWNKG -------------------------------------------------------------- >In-frame_ENST00000264805_ENST00000399075_TCGA-CV-7406-01A_PDE5A_chr4_120517678_-_C4orf3_chr4_120219934_length(transcript)=2891nt_BP=1163nt GTGGAGCAGAGAGTGCTTGGCGGGCGGGTGCCCCGAAGCCTGAGGAATTGATGCATAGTCGGGGTGCGTGGACTCCAGGACGCGCCCCTT TGCAGAAAGAGTCCGTGCCCCGCTGCCGCCTGCTCTGGGCAGCGGCCGTCGGGCAGCGGGTGCTGGCCGTCTTGGCCGGGAGGGTGACAC ACGCCCGGCAGTGATGGTCGAGGAGCCCGCCCGGGTTCGACGCCCGGGTCCCACTCGCCGGCGCGCGGCCGCGGCTCTGCCGGTCGCTCC CCGCCAGGGGGCGGCGCAGCGCGGGGCGAGCGGGAGGCGACGGGCGGCGGCGCGGAGGCCGGGGCCGTGAGGGAGCTGGTTCTGAGTCGC CGACCTCACCTCACCTCACCTGCGCGCGTTGTTGCCCCTACGGAGCCTCCTGGAGTCCAGGATCGGCGGAGTTCGAAAACGAACTTCCCA CGTTTGCTATGTTGCCCTTTGGAGACAAAACAAGAGAAATGGTCAATGCATGGTTTGCTGAGAGAGTTCACACCATCCCTGTGTGCAAGG AAGGTATCAGAGGCCACACCGAATCTTGCTCTTGTCCCTTGCAGCAGAGTCCTCGTGCAGATAACAGTGCCCCTGGAACACCAACCAGGA AAATCTCTGCCTCTGAATTTGACCGGCCTCTTAGACCCATTGTTGTCAAGGATTCTGAGGGAACTGTGAGCTTCCTCTCTGACTCAGAAA AGAAGGAACAGATGCCTCTAACCCCTCCAAGGTTTGATCATGATGAAGGGGACCAGTGCTCAAGACTCTTGGAATTAGTGAAGGATATTT CTAGTCATTTGGATGTCACAGCCTTATGTCACAAAATTTTCTTGCATATCCATGGACTGATATCTGCTGACCGCTATTCCCTGTTCCTTG TCTGTGAAGACAGCTCCAATGACAAGTTTCTTATCAGCCGCCTCTTTGATGTTGCTGAAGGTTCAACACTGGAAGAAGTTTCAAATAACT GTATCCGCTTAGAATGGAACAAAGGCATTGTGGGACATGTGGCAGCGCTTGGTGAGCCCTTGAACATCAAAGATGCATATGAGGATCCTC GGTTCAATGCAGAAGTTGACCAAATTACAGGCTACAAGACACAAAGCATTCTTTGTATGCCAATTAAGAATCATAGGGAAGAGACTTGTT CGCTGATATCTAAATTAAGAAGTTGGTTCTTGAGTGAATTCTGAAAATGGCTACAAACTTCTTGAATAAAGAAGACAGGACTCTCAATAG AAGAATTTCACATCTCCAAGGGACCCTTCCTTTCATTTTACACTTTGTTACTAATTTGCAGAACTCTATTAATTGGGTAGGATTTCACCC ATTCCTAGCTAAGTTCTTAAAATTAAACCCTTTGGTTCGTGTTTAAAAACTTTCAAACATCTGATGGCTTTACAGGGGCTGAATATAAAA GCATTTGTACTTAAAGGTCTTGTGTATTCATTAAGAAATATAGTAATGTCTTTTAATGTTTTAAGAGTTGATCAGGGTTTACTATGATGC AAGTAATAGGATGATTAATAAGGGAAGGTTTTTATGAATTCAAAAGTCAATTATTCAAAAGCAGGGAAAGATTTTGAGAGAGGGAACAAA GTATTCTTAGATTGCGTAGAAGCTGCTAGGTTCCAGTTTTAATTTTTAGGTTTAGTTGGACTCTGTTATGAAAAGATAGGTTATGGGTGG GCGACAGGTTGATACAGTCTTAGAAAAAGCAGGTAATATCAAAGTATTGGAAAGCTAGCATGCATGCCCTCTTACCTGGGTATCTTCCCC CTTTTTTCCTTTTAAACTCTTGAGCCTCCTATAACGAAGGATTATGTGTTTCAAACCTATTTTTTTTTTACTGTTTCATTAAGTGTGCTT GTGCCCAAAATATTTACTTGTATAATATCTGTAACTTGCTTAAATACTTCAGCAAAGTCAGCATATTTACTCATTCAACAAATATTTGAG CCAGGCATTATTTTAGACACAGCAGTGAACAAAACAAAAAGGCATTCTTGCCTTCATGGAGCTTACATTCTTATTGTTATTTAAATCTAA ATGTTATAAAACAAGAATTTATATTCTAGGGTTGATCAGCTAGTATTTAATCAAAAAGGCCACACTCCCATAGCAGCTACTCTAAGCTGT AGTAGCTAATAAAAAATATTAATGTTGGCCGGGCACAGTGGCTCACGCCTATAATCCCAGCACTTTGGGAGGCCAAGGGTGGTAGATCAC TTGAGGTCAAGAGTTGTGACACCAGCCTGGCCAACCTGGTGAAACCCTATCTCTATTAAAAAATACAAAAAAATACAAAAAAATTAGCTG GGCATGTTGGCATGCACCTGTAGTCCCAGCTATTTGGGAGGCTGAGGCACGAGAATTGCTTGAATCCGGGAGGTGGAGGTTGCAGTGAGC CAAGATGGGGCCACTGCACTCTAACGTGGGCAACAGAGACCCTGTCTCAAAAAGAAAATATTCCTGTTAGCCCTAAAGGCTTTACATGAG GAATGGTAGAAGTGGTCTTTTGTTTAAATTAGTTGCATTCAGCATATATGAATTGTCTTAAATATTTTGGGGATACTCCCCCGCCTTTTA AACAGGGCATAAGATCTGGTAAACTCTCTGTATATCTTCCTACCTTTCAAAATCGTTCTTAGGGTTAGTCAAGTCTGGAATATAATTGCT GACTATAAAGTTAGCAATTATGCTTTTAAGGTGTTGTCACATCAACCTAAAGAGAACCATCTATGGAAGGTATGGTTGAAACATCTGTAG GAACACAGAACTGGGATTTCACTGAGTTTACCAAATCAACTGTGTGAACTGTTTCTGCACTGCTTGCTAATGGTTTCATCTAATAAATGT >In-frame_ENST00000264805_ENST00000399075_TCGA-CV-7406-01A_PDE5A_chr4_120517678_-_C4orf3_chr4_120219934_length(amino acids)=251AA_start in transcript=458_stop in transcript=1213 MLPFGDKTREMVNAWFAERVHTIPVCKEGIRGHTESCSCPLQQSPRADNSAPGTPTRKISASEFDRPLRPIVVKDSEGTVSFLSDSEKKE QMPLTPPRFDHDEGDQCSRLLELVKDISSHLDVTALCHKIFLHIHGLISADRYSLFLVCEDSSNDKFLISRLFDVAEGSTLEEVSNNCIR -------------------------------------------------------------- |
Top |
Fusion Gene PPI Analysis for PDE5A-C4orf3 |
| Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in |
| Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
| Hgene | Hgene's interactors | Tgene | Tgene's interactors |
| - Retained PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
| - Lost PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
| - Retained PPIs, but lost function due to frame-shift fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
Top |
Related Drugs for PDE5A-C4orf3 |
| Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.8 2021-05-08) |
| Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
Top |
Related Diseases for PDE5A-C4orf3 |
| Diseases associated with fusion partners. (DisGeNet 4.0) |
| Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
| Hgene | PDE5A | C0027627 | Neoplasm Metastasis | 1 | CTD_human |
Copyright 2021-Present -The University of Texas Health Science Center at Houston (UTHealth)
Web File Viewing | Emergency Information |Campus Carry|Site Policies