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Fusion Gene Summary | |
Fusion Gene ORF analysis | |
Fusion Genomic Features | |
Fusion Protein Features | |
Fusion Gene Sequence | |
Fusion Gene PPI analysis | |
Related Drugs | |
Related Diseases |
Fusion gene:ABLIM1-C11orf57 (FusionGDB2 ID:635) |
Fusion Gene Summary for ABLIM1-C11orf57 |
Fusion gene summary |
Fusion gene information | Fusion gene name: ABLIM1-C11orf57 | Fusion gene ID: 635 | Hgene | Tgene | Gene symbol | ABLIM1 | C11orf57 | Gene ID | 3983 | 55216 |
Gene name | actin binding LIM protein 1 | NKAP domain containing 1 | |
Synonyms | ABLIM|LIMAB1|LIMATIN|abLIM-1 | C11orf57 | |
Cytomap | 10q25.3 | 11q23.1 | |
Type of gene | protein-coding | protein-coding | |
Description | actin-binding LIM protein 1actin-binding LIM protein family member 1actin-binding double-zinc-finger protein | uncharacterized protein NKAPD1NKAP domain containing protein 1uncharacterized protein C11orf57 | |
Modification date | 20200313 | 20200313 | |
UniProtAcc | O14639 | . | |
Ensembl transtripts involved in fusion gene | ENST00000369252, ENST00000533213, ENST00000277895, ENST00000369266, ENST00000392952, ENST00000369253, ENST00000477638, | ENST00000420986, ENST00000532163, ENST00000280352, ENST00000530104, ENST00000393047, | |
Fusion gene scores | * DoF score | 10 X 11 X 6=660 | 2 X 2 X 2=8 |
# samples | 11 | 2 | |
** MAII score | log2(11/660*10)=-2.58496250072116 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(2/8*10)=1.32192809488736 | |
Context | PubMed: ABLIM1 [Title/Abstract] AND C11orf57 [Title/Abstract] AND fusion [Title/Abstract] | ||
Most frequent breakpoint | ABLIM1(116247717)-C11orf57(111951133), # samples:1 | ||
Anticipated loss of major functional domain due to fusion event. | ABLIM1-C11orf57 seems lost the major protein functional domain in Hgene partner, which is a essential gene due to the frame-shifted ORF. ABLIM1-C11orf57 seems lost the major protein functional domain in Tgene partner, which is a essential gene due to the frame-shifted ORF. |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
Partner | Gene | GO ID | GO term | PubMed ID |
Fusion gene breakpoints across ABLIM1 (5'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
Fusion gene breakpoints across C11orf57 (3'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Source | Disease | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
ChimerDB4 | STAD | TCGA-BR-8678-01A | ABLIM1 | chr10 | 116247717 | - | C11orf57 | chr11 | 111951133 | + |
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Fusion Gene ORF analysis for ABLIM1-C11orf57 |
Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
Frame-shift | ENST00000369252 | ENST00000420986 | ABLIM1 | chr10 | 116247717 | - | C11orf57 | chr11 | 111951133 | + |
Frame-shift | ENST00000369252 | ENST00000532163 | ABLIM1 | chr10 | 116247717 | - | C11orf57 | chr11 | 111951133 | + |
Frame-shift | ENST00000369252 | ENST00000280352 | ABLIM1 | chr10 | 116247717 | - | C11orf57 | chr11 | 111951133 | + |
Frame-shift | ENST00000369252 | ENST00000530104 | ABLIM1 | chr10 | 116247717 | - | C11orf57 | chr11 | 111951133 | + |
Frame-shift | ENST00000369252 | ENST00000393047 | ABLIM1 | chr10 | 116247717 | - | C11orf57 | chr11 | 111951133 | + |
Frame-shift | ENST00000533213 | ENST00000420986 | ABLIM1 | chr10 | 116247717 | - | C11orf57 | chr11 | 111951133 | + |
Frame-shift | ENST00000533213 | ENST00000532163 | ABLIM1 | chr10 | 116247717 | - | C11orf57 | chr11 | 111951133 | + |
Frame-shift | ENST00000533213 | ENST00000280352 | ABLIM1 | chr10 | 116247717 | - | C11orf57 | chr11 | 111951133 | + |
Frame-shift | ENST00000533213 | ENST00000530104 | ABLIM1 | chr10 | 116247717 | - | C11orf57 | chr11 | 111951133 | + |
Frame-shift | ENST00000533213 | ENST00000393047 | ABLIM1 | chr10 | 116247717 | - | C11orf57 | chr11 | 111951133 | + |
Frame-shift | ENST00000277895 | ENST00000420986 | ABLIM1 | chr10 | 116247717 | - | C11orf57 | chr11 | 111951133 | + |
Frame-shift | ENST00000277895 | ENST00000532163 | ABLIM1 | chr10 | 116247717 | - | C11orf57 | chr11 | 111951133 | + |
Frame-shift | ENST00000277895 | ENST00000280352 | ABLIM1 | chr10 | 116247717 | - | C11orf57 | chr11 | 111951133 | + |
Frame-shift | ENST00000277895 | ENST00000530104 | ABLIM1 | chr10 | 116247717 | - | C11orf57 | chr11 | 111951133 | + |
Frame-shift | ENST00000277895 | ENST00000393047 | ABLIM1 | chr10 | 116247717 | - | C11orf57 | chr11 | 111951133 | + |
Frame-shift | ENST00000369266 | ENST00000420986 | ABLIM1 | chr10 | 116247717 | - | C11orf57 | chr11 | 111951133 | + |
Frame-shift | ENST00000369266 | ENST00000532163 | ABLIM1 | chr10 | 116247717 | - | C11orf57 | chr11 | 111951133 | + |
Frame-shift | ENST00000369266 | ENST00000280352 | ABLIM1 | chr10 | 116247717 | - | C11orf57 | chr11 | 111951133 | + |
In-frame | ENST00000369266 | ENST00000530104 | ABLIM1 | chr10 | 116247717 | - | C11orf57 | chr11 | 111951133 | + |
Frame-shift | ENST00000369266 | ENST00000393047 | ABLIM1 | chr10 | 116247717 | - | C11orf57 | chr11 | 111951133 | + |
Frame-shift | ENST00000392952 | ENST00000420986 | ABLIM1 | chr10 | 116247717 | - | C11orf57 | chr11 | 111951133 | + |
Frame-shift | ENST00000392952 | ENST00000532163 | ABLIM1 | chr10 | 116247717 | - | C11orf57 | chr11 | 111951133 | + |
Frame-shift | ENST00000392952 | ENST00000280352 | ABLIM1 | chr10 | 116247717 | - | C11orf57 | chr11 | 111951133 | + |
In-frame | ENST00000392952 | ENST00000530104 | ABLIM1 | chr10 | 116247717 | - | C11orf57 | chr11 | 111951133 | + |
Frame-shift | ENST00000392952 | ENST00000393047 | ABLIM1 | chr10 | 116247717 | - | C11orf57 | chr11 | 111951133 | + |
Frame-shift | ENST00000369253 | ENST00000420986 | ABLIM1 | chr10 | 116247717 | - | C11orf57 | chr11 | 111951133 | + |
Frame-shift | ENST00000369253 | ENST00000532163 | ABLIM1 | chr10 | 116247717 | - | C11orf57 | chr11 | 111951133 | + |
Frame-shift | ENST00000369253 | ENST00000280352 | ABLIM1 | chr10 | 116247717 | - | C11orf57 | chr11 | 111951133 | + |
In-frame | ENST00000369253 | ENST00000530104 | ABLIM1 | chr10 | 116247717 | - | C11orf57 | chr11 | 111951133 | + |
Frame-shift | ENST00000369253 | ENST00000393047 | ABLIM1 | chr10 | 116247717 | - | C11orf57 | chr11 | 111951133 | + |
intron-3CDS | ENST00000477638 | ENST00000420986 | ABLIM1 | chr10 | 116247717 | - | C11orf57 | chr11 | 111951133 | + |
intron-3CDS | ENST00000477638 | ENST00000532163 | ABLIM1 | chr10 | 116247717 | - | C11orf57 | chr11 | 111951133 | + |
intron-3CDS | ENST00000477638 | ENST00000280352 | ABLIM1 | chr10 | 116247717 | - | C11orf57 | chr11 | 111951133 | + |
intron-3CDS | ENST00000477638 | ENST00000530104 | ABLIM1 | chr10 | 116247717 | - | C11orf57 | chr11 | 111951133 | + |
intron-3CDS | ENST00000477638 | ENST00000393047 | ABLIM1 | chr10 | 116247717 | - | C11orf57 | chr11 | 111951133 | + |
ORFfinder result based on the fusion transcript sequence of in-frame fusion genes. |
Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | Seq length (transcript) | BP loci (transcript) | Predicted start (transcript) | Predicted stop (transcript) | Seq length (amino acids) |
ENST00000369266 | ABLIM1 | chr10 | 116247717 | - | ENST00000530104 | C11orf57 | chr11 | 111951133 | + | 2433 | 414 | 1508 | 1137 | 123 |
ENST00000392952 | ABLIM1 | chr10 | 116247717 | - | ENST00000530104 | C11orf57 | chr11 | 111951133 | + | 2438 | 419 | 1513 | 1142 | 123 |
ENST00000369253 | ABLIM1 | chr10 | 116247717 | - | ENST00000530104 | C11orf57 | chr11 | 111951133 | + | 2342 | 323 | 1417 | 1046 | 123 |
DeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated. |
Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | No-coding score | Coding score |
ENST00000369266 | ENST00000530104 | ABLIM1 | chr10 | 116247717 | - | C11orf57 | chr11 | 111951133 | + | 0.4957845 | 0.5042155 |
ENST00000392952 | ENST00000530104 | ABLIM1 | chr10 | 116247717 | - | C11orf57 | chr11 | 111951133 | + | 0.8361165 | 0.16388349 |
ENST00000369253 | ENST00000530104 | ABLIM1 | chr10 | 116247717 | - | C11orf57 | chr11 | 111951133 | + | 0.81136894 | 0.18863104 |
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Fusion Genomic Features for ABLIM1-C11orf57 |
FusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints. |
Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | 1-p | p (fusion gene breakpoint) |
ABLIM1 | chr10 | 116247716 | - | C11orf57 | chr11 | 111951132 | + | 2.63E-05 | 0.9999738 |
ABLIM1 | chr10 | 116247716 | - | C11orf57 | chr11 | 111951132 | + | 2.63E-05 | 0.9999738 |
Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page. |
Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page. |
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Fusion Protein Features for ABLIM1-C11orf57 |
Go to FGviewer for the breakpoints of chr10:116247717-chr11:111951133 - FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels. |
Main function of each fusion partner protein. (from UniProt) |
Hgene | Tgene |
ABLIM1 | . |
FUNCTION: May act as scaffold protein (By similarity). May play a role in the development of the retina. Has been suggested to play a role in axon guidance. {ECO:0000250, ECO:0000269|PubMed:9245787}. | FUNCTION: Might normally function as a transcriptional repressor. EWS-fusion-proteins (EFPS) may play a role in the tumorigenic process. They may disturb gene expression by mimicking, or interfering with the normal function of CTD-POLII within the transcription initiation complex. They may also contribute to an aberrant activation of the fusion protein target genes. |
Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | ABLIM1 | chr10:116247717 | chr11:111951133 | ENST00000277895 | - | 8 | 23 | 156_216 | 347.0 | 779.0 | Domain | LIM zinc-binding 2 |
Hgene | ABLIM1 | chr10:116247717 | chr11:111951133 | ENST00000277895 | - | 8 | 23 | 224_283 | 347.0 | 779.0 | Domain | LIM zinc-binding 3 |
Hgene | ABLIM1 | chr10:116247717 | chr11:111951133 | ENST00000277895 | - | 8 | 23 | 283_343 | 347.0 | 779.0 | Domain | LIM zinc-binding 4 |
Hgene | ABLIM1 | chr10:116247717 | chr11:111951133 | ENST00000277895 | - | 8 | 23 | 97_156 | 347.0 | 779.0 | Domain | LIM zinc-binding 1 |
Hgene | ABLIM1 | chr10:116247717 | chr11:111951133 | ENST00000369252 | - | 8 | 23 | 156_216 | 287.0 | 719.0 | Domain | LIM zinc-binding 2 |
Hgene | ABLIM1 | chr10:116247717 | chr11:111951133 | ENST00000369252 | - | 8 | 23 | 224_283 | 287.0 | 719.0 | Domain | LIM zinc-binding 3 |
Hgene | ABLIM1 | chr10:116247717 | chr11:111951133 | ENST00000369252 | - | 8 | 23 | 97_156 | 287.0 | 719.0 | Domain | LIM zinc-binding 1 |
Tgene | C11orf57 | chr10:116247717 | chr11:111951133 | ENST00000280352 | 2 | 6 | 134_257 | 56.666666666666664 | 293.0 | Compositional bias | Note=Lys-rich | |
Tgene | C11orf57 | chr10:116247717 | chr11:111951133 | ENST00000393047 | 2 | 6 | 134_257 | 56.666666666666664 | 294.0 | Compositional bias | Note=Lys-rich | |
Tgene | C11orf57 | chr10:116247717 | chr11:111951133 | ENST00000420986 | 2 | 6 | 134_257 | 56.666666666666664 | 293.0 | Compositional bias | Note=Lys-rich | |
Tgene | C11orf57 | chr10:116247717 | chr11:111951133 | ENST00000532163 | 2 | 6 | 134_257 | 27.666666666666668 | 265.0 | Compositional bias | Note=Lys-rich |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | ABLIM1 | chr10:116247717 | chr11:111951133 | ENST00000277895 | - | 8 | 23 | 590_614 | 347.0 | 779.0 | Coiled coil | Ontology_term=ECO:0000255 |
Hgene | ABLIM1 | chr10:116247717 | chr11:111951133 | ENST00000369252 | - | 8 | 23 | 590_614 | 287.0 | 719.0 | Coiled coil | Ontology_term=ECO:0000255 |
Hgene | ABLIM1 | chr10:116247717 | chr11:111951133 | ENST00000369253 | - | 3 | 16 | 590_614 | 31.0 | 402.0 | Coiled coil | Ontology_term=ECO:0000255 |
Hgene | ABLIM1 | chr10:116247717 | chr11:111951133 | ENST00000392952 | - | 3 | 18 | 590_614 | 31.0 | 456.0 | Coiled coil | Ontology_term=ECO:0000255 |
Hgene | ABLIM1 | chr10:116247717 | chr11:111951133 | ENST00000277895 | - | 8 | 23 | 710_778 | 347.0 | 779.0 | Domain | HP |
Hgene | ABLIM1 | chr10:116247717 | chr11:111951133 | ENST00000369252 | - | 8 | 23 | 283_343 | 287.0 | 719.0 | Domain | LIM zinc-binding 4 |
Hgene | ABLIM1 | chr10:116247717 | chr11:111951133 | ENST00000369252 | - | 8 | 23 | 710_778 | 287.0 | 719.0 | Domain | HP |
Hgene | ABLIM1 | chr10:116247717 | chr11:111951133 | ENST00000369253 | - | 3 | 16 | 156_216 | 31.0 | 402.0 | Domain | LIM zinc-binding 2 |
Hgene | ABLIM1 | chr10:116247717 | chr11:111951133 | ENST00000369253 | - | 3 | 16 | 224_283 | 31.0 | 402.0 | Domain | LIM zinc-binding 3 |
Hgene | ABLIM1 | chr10:116247717 | chr11:111951133 | ENST00000369253 | - | 3 | 16 | 283_343 | 31.0 | 402.0 | Domain | LIM zinc-binding 4 |
Hgene | ABLIM1 | chr10:116247717 | chr11:111951133 | ENST00000369253 | - | 3 | 16 | 710_778 | 31.0 | 402.0 | Domain | HP |
Hgene | ABLIM1 | chr10:116247717 | chr11:111951133 | ENST00000369253 | - | 3 | 16 | 97_156 | 31.0 | 402.0 | Domain | LIM zinc-binding 1 |
Hgene | ABLIM1 | chr10:116247717 | chr11:111951133 | ENST00000392952 | - | 3 | 18 | 156_216 | 31.0 | 456.0 | Domain | LIM zinc-binding 2 |
Hgene | ABLIM1 | chr10:116247717 | chr11:111951133 | ENST00000392952 | - | 3 | 18 | 224_283 | 31.0 | 456.0 | Domain | LIM zinc-binding 3 |
Hgene | ABLIM1 | chr10:116247717 | chr11:111951133 | ENST00000392952 | - | 3 | 18 | 283_343 | 31.0 | 456.0 | Domain | LIM zinc-binding 4 |
Hgene | ABLIM1 | chr10:116247717 | chr11:111951133 | ENST00000392952 | - | 3 | 18 | 710_778 | 31.0 | 456.0 | Domain | HP |
Hgene | ABLIM1 | chr10:116247717 | chr11:111951133 | ENST00000392952 | - | 3 | 18 | 97_156 | 31.0 | 456.0 | Domain | LIM zinc-binding 1 |
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Fusion Gene Sequence for ABLIM1-C11orf57 |
For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones. |
>In-frame_ENST00000369266_ENST00000530104_TCGA-BR-8678-01A_ABLIM1_chr10_116247717_-_C11orf57_chr11_111951133_length(transcript)=2433nt_BP=414nt GAGGAGAGGAGGCGTGAGAGAGCGTGCCTGCCCGCCGCACACGGGGCTGGTTTCCGGAGTGCGTCTCTAGAGGGATGCACGTTGCCTTAG CCGAGCTTCGGAGAGAAGCCTGATATGTAACCCAGGCAGGTGGGAGCCTCAGTCTGTCGGGCTGAGGTCTGGCATCTACAAAGCCTCTTG GCCGTGTTCTGAACTTGAAGCCTGGAGGAGTTCTCTGCTCAGCACAGCCAAGGAACAGAATTAGAAGAAAAGGAACCCTGGCCTGAGGCA GGTGACAAACATTACCACCCCAGCTGTGCACGATGCAGCAGATGCAACCAGATGTTCACAGAAGGAGAGGAAATGTATCTTCAAGGCTCC ACCGTTTGGCATCCCGACTGTAAGCAATCTACGAAGACCGAGGAAAAGCTGCGGCCGGATGCGCAGTGATGGTTTTGATGAAGAAAGTCA AAGATACTATTGGAGGCCAAAGAATGAAATTTCTGGGACACTGGAAGATGATTTTCTTAAGGCTAAATCCTGGAATAAAAAGTTCTATGA TTATGAAGCAAACATGCCAGACAGGTTTGTGATTAATTCCTGTGAGCATTAATATTTGGCCTGAGAACGTGTACTTATCAAAATTAATTG TCCCCACAAAAAACTTGTGTACAAAAGTTCATACCAGCATTATTAATAATGGCCCCAAAAAATAATGGCCAAGTAATCCAAATGTCTGTC AACTGATGAATGGGTAAACAAAATGCGATATATCCATACAATGGAATATTATTTGGCAGTAAAAGAAATGAAGTACAGATACATGTTACA ACGTGGCCTTGAAAACATCATGCTAAGTGAGAAGGAAGAAGCCAAGTCACGAAAGACCGCATATTGTATGATTCTATTTATGTACTATGT CCATACATAACTGTATGATTCCATTTATGTGGTAGGCAATTCCATAGAGACAGAAGGCAGATTAGTGATTGCCCTGGGCTGGAGGCACTA CACTTTGAATGCCATGATATGTGAATTATACTTCAATAAAGTTGTTATTTAAAAAAAATAGGCCAGGTGCTGTGGCTCATGCCTGTAATC CCAGTACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAAGAGATTGAGACCATCCTAGCCAACATGGTGAAACCCCAGCTCTACTAA AAATACAAAAATTAGCCGGGCGTGGTGGCATGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATCACTTGAACCCAGGAG GTGGAGGTTGCAGTTGAGCCGAGATTGCACCACTGCACTCCAGCCTGGCAACTGAGTGAGACTCTGTCTCAAGAAAAAAAGAAAAAAATA ATAATAAGGCTGGGCGCGGTGGCTCATGCTTGTAATCCCAGCACTTTGGGAGGCCAAAGCGGGCAGATCCATGAGGTCAGGAGTTTGAGA CCAGCCTGGCCAACATAATGAAACCCCATCTCTACTAAAAATACAAAAATTAGCCAGGCATGGTAGCATGTGCCTGTAGTCCCAGCTACT CGGGAGGCTAAGGCAGGAGAATCACTTGAAATCGGGAGGCGGAGGTTGCAGTGAGCTGAGATCACGCCACTGCACTCCAGCCTGGGCAAG AGTGAGACTCCATCTCAAAAAAAAAAAAAAAAATTGTCCCCATGTAGACAGCATGATATTATGAAGTGTTTTTGGAAAAGTGCTTCATAG CTAAAGAGCAGAGTGTAAGAGTTCGTTAGTGTTTCTTAAGGAAAGCAATGGCAAGTTCTCTTACAAATGGACAAAATAATCTTGTATGTC TGAAGTGATAGTGTACAGTACAGGAAATGTAGCTGTTACTGAGCTATAATGGGGGCTTGGTTCTACCATATCTCTACTTTGTGTTTATGT TTGTGTATGCATGTACTCCAAAGTCTTTCTAATGTTGCTTTAATTTCCAAAAATGTATGCATTGCTTTAACAATACATGTGATGTGTCAT ATTACAGATGGGGTCACAGTGGTTATAAAGAGTTATACCCTGAAGAATTTGAAACAGACAGGTAAGGAAAATAGGCTTACTGAAAGAAAC TAAGATGGTACAAAATCTGTATTATAAATTGATTTCTTAACTTTTACGAAGAATATACTTGCCATCAAAAATGTAGCTAGAGAAACAATA GGTGATTTAGTTAGGAGGTGATCCCTGTTTTCCCATTCTCTGGTTGATGTTTGGCATGTCTGTAAGCATTTTGGTTTTTATATATAGTAT TCCATACAGTAACTCAGTATGGCAGCTTAGAATTTTTACCTTCATTTTAAAGATGAGGAAACAAAAACTCAATGAGAATATTAAAGTGTT AAAGTATACATTAAAGTGCTTATTTAAAATTCAGATGTTAACCTCAATTTTTTAATCTAGAATGCAAAATATTAAAATAATACGCTTTTT >In-frame_ENST00000369266_ENST00000530104_TCGA-BR-8678-01A_ABLIM1_chr10_116247717_-_C11orf57_chr11_111951133_length(amino acids)=123AA_start in transcript=1508_stop in transcript=1137 MLPCLANFCIFSRDGVSLCWPGWSQTPDLMDLPALASQSAGITSMSHRAQPYYYFFLFFLRQSLTQLPGWSAVVQSRLNCNLHLLGSSDS -------------------------------------------------------------- >In-frame_ENST00000392952_ENST00000530104_TCGA-BR-8678-01A_ABLIM1_chr10_116247717_-_C11orf57_chr11_111951133_length(transcript)=2438nt_BP=419nt AAAGCGAGGAGAGGAGGCGTGAGAGAGCGTGCCTGCCCGCCGCACACGGGGCTGGTTTCCGGAGTGCGTCTCTAGAGGGATGCACGTTGC CTTAGCCGAGCTTCGGAGAGAAGCCTGATATGTAACCCAGGCAGGTGGGAGCCTCAGTCTGTCGGGCTGAGGTCTGGCATCTACAAAGCC TCTTGGCCGTGTTCTGAACTTGAAGCCTGGAGGAGTTCTCTGCTCAGCACAGCCAAGGAACAGAATTAGAAGAAAAGGAACCCTGGCCTG AGGCAGGTGACAAACATTACCACCCCAGCTGTGCACGATGCAGCAGATGCAACCAGATGTTCACAGAAGGAGAGGAAATGTATCTTCAAG GCTCCACCGTTTGGCATCCCGACTGTAAGCAATCTACGAAGACCGAGGAAAAGCTGCGGCCGGATGCGCAGTGATGGTTTTGATGAAGAA AGTCAAAGATACTATTGGAGGCCAAAGAATGAAATTTCTGGGACACTGGAAGATGATTTTCTTAAGGCTAAATCCTGGAATAAAAAGTTC TATGATTATGAAGCAAACATGCCAGACAGGTTTGTGATTAATTCCTGTGAGCATTAATATTTGGCCTGAGAACGTGTACTTATCAAAATT AATTGTCCCCACAAAAAACTTGTGTACAAAAGTTCATACCAGCATTATTAATAATGGCCCCAAAAAATAATGGCCAAGTAATCCAAATGT CTGTCAACTGATGAATGGGTAAACAAAATGCGATATATCCATACAATGGAATATTATTTGGCAGTAAAAGAAATGAAGTACAGATACATG TTACAACGTGGCCTTGAAAACATCATGCTAAGTGAGAAGGAAGAAGCCAAGTCACGAAAGACCGCATATTGTATGATTCTATTTATGTAC TATGTCCATACATAACTGTATGATTCCATTTATGTGGTAGGCAATTCCATAGAGACAGAAGGCAGATTAGTGATTGCCCTGGGCTGGAGG CACTACACTTTGAATGCCATGATATGTGAATTATACTTCAATAAAGTTGTTATTTAAAAAAAATAGGCCAGGTGCTGTGGCTCATGCCTG TAATCCCAGTACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAAGAGATTGAGACCATCCTAGCCAACATGGTGAAACCCCAGCTCT ACTAAAAATACAAAAATTAGCCGGGCGTGGTGGCATGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATCACTTGAACCC AGGAGGTGGAGGTTGCAGTTGAGCCGAGATTGCACCACTGCACTCCAGCCTGGCAACTGAGTGAGACTCTGTCTCAAGAAAAAAAGAAAA AAATAATAATAAGGCTGGGCGCGGTGGCTCATGCTTGTAATCCCAGCACTTTGGGAGGCCAAAGCGGGCAGATCCATGAGGTCAGGAGTT TGAGACCAGCCTGGCCAACATAATGAAACCCCATCTCTACTAAAAATACAAAAATTAGCCAGGCATGGTAGCATGTGCCTGTAGTCCCAG CTACTCGGGAGGCTAAGGCAGGAGAATCACTTGAAATCGGGAGGCGGAGGTTGCAGTGAGCTGAGATCACGCCACTGCACTCCAGCCTGG GCAAGAGTGAGACTCCATCTCAAAAAAAAAAAAAAAAATTGTCCCCATGTAGACAGCATGATATTATGAAGTGTTTTTGGAAAAGTGCTT CATAGCTAAAGAGCAGAGTGTAAGAGTTCGTTAGTGTTTCTTAAGGAAAGCAATGGCAAGTTCTCTTACAAATGGACAAAATAATCTTGT ATGTCTGAAGTGATAGTGTACAGTACAGGAAATGTAGCTGTTACTGAGCTATAATGGGGGCTTGGTTCTACCATATCTCTACTTTGTGTT TATGTTTGTGTATGCATGTACTCCAAAGTCTTTCTAATGTTGCTTTAATTTCCAAAAATGTATGCATTGCTTTAACAATACATGTGATGT GTCATATTACAGATGGGGTCACAGTGGTTATAAAGAGTTATACCCTGAAGAATTTGAAACAGACAGGTAAGGAAAATAGGCTTACTGAAA GAAACTAAGATGGTACAAAATCTGTATTATAAATTGATTTCTTAACTTTTACGAAGAATATACTTGCCATCAAAAATGTAGCTAGAGAAA CAATAGGTGATTTAGTTAGGAGGTGATCCCTGTTTTCCCATTCTCTGGTTGATGTTTGGCATGTCTGTAAGCATTTTGGTTTTTATATAT AGTATTCCATACAGTAACTCAGTATGGCAGCTTAGAATTTTTACCTTCATTTTAAAGATGAGGAAACAAAAACTCAATGAGAATATTAAA GTGTTAAAGTATACATTAAAGTGCTTATTTAAAATTCAGATGTTAACCTCAATTTTTTAATCTAGAATGCAAAATATTAAAATAATACGC >In-frame_ENST00000392952_ENST00000530104_TCGA-BR-8678-01A_ABLIM1_chr10_116247717_-_C11orf57_chr11_111951133_length(amino acids)=123AA_start in transcript=1513_stop in transcript=1142 MLPCLANFCIFSRDGVSLCWPGWSQTPDLMDLPALASQSAGITSMSHRAQPYYYFFLFFLRQSLTQLPGWSAVVQSRLNCNLHLLGSSDS -------------------------------------------------------------- >In-frame_ENST00000369253_ENST00000530104_TCGA-BR-8678-01A_ABLIM1_chr10_116247717_-_C11orf57_chr11_111951133_length(transcript)=2342nt_BP=323nt CGAGCTTCGGAGAGAAGCCTGATATGTAACCCAGGCAGGTGGGAGCCTCAGTCTGTCGGGCTGAGGTCTGGCATCTACAAAGCCTCTTGG CCGTGTTCTGAACTTGAAGCCTGGAGGAGTTCTCTGCTCAGCACAGCCAAGGAACAGAATTAGAAGAAAAGGAACCCTGGCCTGAGGCAG GTGACAAACATTACCACCCCAGCTGTGCACGATGCAGCAGATGCAACCAGATGTTCACAGAAGGAGAGGAAATGTATCTTCAAGGCTCCA CCGTTTGGCATCCCGACTGTAAGCAATCTACGAAGACCGAGGAAAAGCTGCGGCCGGATGCGCAGTGATGGTTTTGATGAAGAAAGTCAA AGATACTATTGGAGGCCAAAGAATGAAATTTCTGGGACACTGGAAGATGATTTTCTTAAGGCTAAATCCTGGAATAAAAAGTTCTATGAT TATGAAGCAAACATGCCAGACAGGTTTGTGATTAATTCCTGTGAGCATTAATATTTGGCCTGAGAACGTGTACTTATCAAAATTAATTGT CCCCACAAAAAACTTGTGTACAAAAGTTCATACCAGCATTATTAATAATGGCCCCAAAAAATAATGGCCAAGTAATCCAAATGTCTGTCA ACTGATGAATGGGTAAACAAAATGCGATATATCCATACAATGGAATATTATTTGGCAGTAAAAGAAATGAAGTACAGATACATGTTACAA CGTGGCCTTGAAAACATCATGCTAAGTGAGAAGGAAGAAGCCAAGTCACGAAAGACCGCATATTGTATGATTCTATTTATGTACTATGTC CATACATAACTGTATGATTCCATTTATGTGGTAGGCAATTCCATAGAGACAGAAGGCAGATTAGTGATTGCCCTGGGCTGGAGGCACTAC ACTTTGAATGCCATGATATGTGAATTATACTTCAATAAAGTTGTTATTTAAAAAAAATAGGCCAGGTGCTGTGGCTCATGCCTGTAATCC CAGTACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAAGAGATTGAGACCATCCTAGCCAACATGGTGAAACCCCAGCTCTACTAAA AATACAAAAATTAGCCGGGCGTGGTGGCATGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATCACTTGAACCCAGGAGG TGGAGGTTGCAGTTGAGCCGAGATTGCACCACTGCACTCCAGCCTGGCAACTGAGTGAGACTCTGTCTCAAGAAAAAAAGAAAAAAATAA TAATAAGGCTGGGCGCGGTGGCTCATGCTTGTAATCCCAGCACTTTGGGAGGCCAAAGCGGGCAGATCCATGAGGTCAGGAGTTTGAGAC CAGCCTGGCCAACATAATGAAACCCCATCTCTACTAAAAATACAAAAATTAGCCAGGCATGGTAGCATGTGCCTGTAGTCCCAGCTACTC GGGAGGCTAAGGCAGGAGAATCACTTGAAATCGGGAGGCGGAGGTTGCAGTGAGCTGAGATCACGCCACTGCACTCCAGCCTGGGCAAGA GTGAGACTCCATCTCAAAAAAAAAAAAAAAAATTGTCCCCATGTAGACAGCATGATATTATGAAGTGTTTTTGGAAAAGTGCTTCATAGC TAAAGAGCAGAGTGTAAGAGTTCGTTAGTGTTTCTTAAGGAAAGCAATGGCAAGTTCTCTTACAAATGGACAAAATAATCTTGTATGTCT GAAGTGATAGTGTACAGTACAGGAAATGTAGCTGTTACTGAGCTATAATGGGGGCTTGGTTCTACCATATCTCTACTTTGTGTTTATGTT TGTGTATGCATGTACTCCAAAGTCTTTCTAATGTTGCTTTAATTTCCAAAAATGTATGCATTGCTTTAACAATACATGTGATGTGTCATA TTACAGATGGGGTCACAGTGGTTATAAAGAGTTATACCCTGAAGAATTTGAAACAGACAGGTAAGGAAAATAGGCTTACTGAAAGAAACT AAGATGGTACAAAATCTGTATTATAAATTGATTTCTTAACTTTTACGAAGAATATACTTGCCATCAAAAATGTAGCTAGAGAAACAATAG GTGATTTAGTTAGGAGGTGATCCCTGTTTTCCCATTCTCTGGTTGATGTTTGGCATGTCTGTAAGCATTTTGGTTTTTATATATAGTATT CCATACAGTAACTCAGTATGGCAGCTTAGAATTTTTACCTTCATTTTAAAGATGAGGAAACAAAAACTCAATGAGAATATTAAAGTGTTA AAGTATACATTAAAGTGCTTATTTAAAATTCAGATGTTAACCTCAATTTTTTAATCTAGAATGCAAAATATTAAAATAATACGCTTTTTT >In-frame_ENST00000369253_ENST00000530104_TCGA-BR-8678-01A_ABLIM1_chr10_116247717_-_C11orf57_chr11_111951133_length(amino acids)=123AA_start in transcript=1417_stop in transcript=1046 MLPCLANFCIFSRDGVSLCWPGWSQTPDLMDLPALASQSAGITSMSHRAQPYYYFFLFFLRQSLTQLPGWSAVVQSRLNCNLHLLGSSDS -------------------------------------------------------------- |
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Fusion Gene PPI Analysis for ABLIM1-C11orf57 |
Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in |
Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
Hgene | Hgene's interactors | Tgene | Tgene's interactors |
- Retained PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
- Lost PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
- Retained PPIs, but lost function due to frame-shift fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Related Drugs for ABLIM1-C11orf57 |
Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.8 2021-05-08) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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Related Diseases for ABLIM1-C11orf57 |
Diseases associated with fusion partners. (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Hgene | ABLIM1 | C0013146 | Drug abuse | 1 | CTD_human |
Hgene | ABLIM1 | C0013170 | Drug habituation | 1 | CTD_human |
Hgene | ABLIM1 | C0013222 | Drug Use Disorders | 1 | CTD_human |
Hgene | ABLIM1 | C0029231 | Organic Mental Disorders, Substance-Induced | 1 | CTD_human |
Hgene | ABLIM1 | C0038580 | Substance Dependence | 1 | CTD_human |
Hgene | ABLIM1 | C0038586 | Substance Use Disorders | 1 | CTD_human |
Hgene | ABLIM1 | C0236969 | Substance-Related Disorders | 1 | CTD_human |
Hgene | ABLIM1 | C0740858 | Substance abuse problem | 1 | CTD_human |
Hgene | ABLIM1 | C1510472 | Drug Dependence | 1 | CTD_human |
Hgene | ABLIM1 | C4316881 | Prescription Drug Abuse | 1 | CTD_human |