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Fusion Gene Summary | |
Fusion Gene ORF analysis | |
Fusion Genomic Features | |
Fusion Protein Features | |
Fusion Gene Sequence | |
Fusion Gene PPI analysis | |
Related Drugs | |
Related Diseases |
Fusion gene:PDLIM5-CCSER1 (FusionGDB2 ID:63587) |
Fusion Gene Summary for PDLIM5-CCSER1 |
Fusion gene summary |
Fusion gene information | Fusion gene name: PDLIM5-CCSER1 | Fusion gene ID: 63587 | Hgene | Tgene | Gene symbol | PDLIM5 | CCSER1 | Gene ID | 10611 | 401145 |
Gene name | PDZ and LIM domain 5 | coiled-coil serine rich protein 1 | |
Synonyms | ENH|ENH1|L9|LIM | FAM190A | |
Cytomap | 4q22.3 | 4q22.1 | |
Type of gene | protein-coding | protein-coding | |
Description | PDZ and LIM domain protein 5enigma homologenigma-like LIM domain proteinenigma-like PDZ and LIM domains protein | serine-rich coiled-coil domain-containing protein 1family with sequence similarity 190, member Aprotein FAM190A | |
Modification date | 20200313 | 20200313 | |
UniProtAcc | . | Q9C0I3 | |
Ensembl transtripts involved in fusion gene | ENST00000450793, ENST00000538141, ENST00000380180, ENST00000318007, ENST00000437932, ENST00000317968, ENST00000542407, ENST00000508216, ENST00000514743, ENST00000380176, ENST00000359265, ENST00000512274, ENST00000504489, | ENST00000509176, ENST00000333691, ENST00000432775, ENST00000504150, | |
Fusion gene scores | * DoF score | 20 X 18 X 9=3240 | 17 X 16 X 5=1360 |
# samples | 23 | 18 | |
** MAII score | log2(23/3240*10)=-3.81628804682761 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(18/1360*10)=-2.91753783980803 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
Context | PubMed: PDLIM5 [Title/Abstract] AND CCSER1 [Title/Abstract] AND fusion [Title/Abstract] | ||
Most frequent breakpoint | PDLIM5(95376535)-CCSER1(92519723), # samples:1 PDLIM5(95507595)-CCSER1(91389385), # samples:1 | ||
Anticipated loss of major functional domain due to fusion event. | PDLIM5-CCSER1 seems lost the major protein functional domain in Hgene partner, which is a essential gene due to the frame-shifted ORF. |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
Partner | Gene | GO ID | GO term | PubMed ID |
Fusion gene breakpoints across PDLIM5 (5'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
Fusion gene breakpoints across CCSER1 (3'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Source | Disease | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
ChimerDB4 | UCS | TCGA-NA-A4R0-01A | PDLIM5 | chr4 | 95376535 | + | CCSER1 | chr4 | 92519723 | + |
ChimerDB4 | STAD | TCGA-HU-A4GY-01A | PDLIM5 | chr4 | 95507595 | + | CCSER1 | chr4 | 91389385 | + |
Top |
Fusion Gene ORF analysis for PDLIM5-CCSER1 |
Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
In-frame | ENST00000450793 | ENST00000509176 | PDLIM5 | chr4 | 95376535 | + | CCSER1 | chr4 | 92519723 | + |
In-frame | ENST00000450793 | ENST00000333691 | PDLIM5 | chr4 | 95376535 | + | CCSER1 | chr4 | 92519723 | + |
5CDS-intron | ENST00000450793 | ENST00000432775 | PDLIM5 | chr4 | 95376535 | + | CCSER1 | chr4 | 92519723 | + |
5CDS-intron | ENST00000450793 | ENST00000504150 | PDLIM5 | chr4 | 95376535 | + | CCSER1 | chr4 | 92519723 | + |
In-frame | ENST00000538141 | ENST00000509176 | PDLIM5 | chr4 | 95376535 | + | CCSER1 | chr4 | 92519723 | + |
In-frame | ENST00000538141 | ENST00000333691 | PDLIM5 | chr4 | 95376535 | + | CCSER1 | chr4 | 92519723 | + |
5CDS-intron | ENST00000538141 | ENST00000432775 | PDLIM5 | chr4 | 95376535 | + | CCSER1 | chr4 | 92519723 | + |
5CDS-intron | ENST00000538141 | ENST00000504150 | PDLIM5 | chr4 | 95376535 | + | CCSER1 | chr4 | 92519723 | + |
In-frame | ENST00000380180 | ENST00000509176 | PDLIM5 | chr4 | 95376535 | + | CCSER1 | chr4 | 92519723 | + |
In-frame | ENST00000380180 | ENST00000333691 | PDLIM5 | chr4 | 95376535 | + | CCSER1 | chr4 | 92519723 | + |
5CDS-intron | ENST00000380180 | ENST00000432775 | PDLIM5 | chr4 | 95376535 | + | CCSER1 | chr4 | 92519723 | + |
5CDS-intron | ENST00000380180 | ENST00000504150 | PDLIM5 | chr4 | 95376535 | + | CCSER1 | chr4 | 92519723 | + |
In-frame | ENST00000318007 | ENST00000509176 | PDLIM5 | chr4 | 95376535 | + | CCSER1 | chr4 | 92519723 | + |
In-frame | ENST00000318007 | ENST00000333691 | PDLIM5 | chr4 | 95376535 | + | CCSER1 | chr4 | 92519723 | + |
5CDS-intron | ENST00000318007 | ENST00000432775 | PDLIM5 | chr4 | 95376535 | + | CCSER1 | chr4 | 92519723 | + |
5CDS-intron | ENST00000318007 | ENST00000504150 | PDLIM5 | chr4 | 95376535 | + | CCSER1 | chr4 | 92519723 | + |
In-frame | ENST00000437932 | ENST00000509176 | PDLIM5 | chr4 | 95376535 | + | CCSER1 | chr4 | 92519723 | + |
In-frame | ENST00000437932 | ENST00000333691 | PDLIM5 | chr4 | 95376535 | + | CCSER1 | chr4 | 92519723 | + |
5CDS-intron | ENST00000437932 | ENST00000432775 | PDLIM5 | chr4 | 95376535 | + | CCSER1 | chr4 | 92519723 | + |
5CDS-intron | ENST00000437932 | ENST00000504150 | PDLIM5 | chr4 | 95376535 | + | CCSER1 | chr4 | 92519723 | + |
In-frame | ENST00000317968 | ENST00000509176 | PDLIM5 | chr4 | 95376535 | + | CCSER1 | chr4 | 92519723 | + |
In-frame | ENST00000317968 | ENST00000333691 | PDLIM5 | chr4 | 95376535 | + | CCSER1 | chr4 | 92519723 | + |
5CDS-intron | ENST00000317968 | ENST00000432775 | PDLIM5 | chr4 | 95376535 | + | CCSER1 | chr4 | 92519723 | + |
5CDS-intron | ENST00000317968 | ENST00000504150 | PDLIM5 | chr4 | 95376535 | + | CCSER1 | chr4 | 92519723 | + |
5UTR-3CDS | ENST00000542407 | ENST00000509176 | PDLIM5 | chr4 | 95376535 | + | CCSER1 | chr4 | 92519723 | + |
5UTR-3CDS | ENST00000542407 | ENST00000333691 | PDLIM5 | chr4 | 95376535 | + | CCSER1 | chr4 | 92519723 | + |
5UTR-intron | ENST00000542407 | ENST00000432775 | PDLIM5 | chr4 | 95376535 | + | CCSER1 | chr4 | 92519723 | + |
5UTR-intron | ENST00000542407 | ENST00000504150 | PDLIM5 | chr4 | 95376535 | + | CCSER1 | chr4 | 92519723 | + |
In-frame | ENST00000508216 | ENST00000509176 | PDLIM5 | chr4 | 95376535 | + | CCSER1 | chr4 | 92519723 | + |
In-frame | ENST00000508216 | ENST00000333691 | PDLIM5 | chr4 | 95376535 | + | CCSER1 | chr4 | 92519723 | + |
5CDS-intron | ENST00000508216 | ENST00000432775 | PDLIM5 | chr4 | 95376535 | + | CCSER1 | chr4 | 92519723 | + |
5CDS-intron | ENST00000508216 | ENST00000504150 | PDLIM5 | chr4 | 95376535 | + | CCSER1 | chr4 | 92519723 | + |
In-frame | ENST00000514743 | ENST00000509176 | PDLIM5 | chr4 | 95376535 | + | CCSER1 | chr4 | 92519723 | + |
In-frame | ENST00000514743 | ENST00000333691 | PDLIM5 | chr4 | 95376535 | + | CCSER1 | chr4 | 92519723 | + |
5CDS-intron | ENST00000514743 | ENST00000432775 | PDLIM5 | chr4 | 95376535 | + | CCSER1 | chr4 | 92519723 | + |
5CDS-intron | ENST00000514743 | ENST00000504150 | PDLIM5 | chr4 | 95376535 | + | CCSER1 | chr4 | 92519723 | + |
intron-3CDS | ENST00000380176 | ENST00000509176 | PDLIM5 | chr4 | 95376535 | + | CCSER1 | chr4 | 92519723 | + |
intron-3CDS | ENST00000380176 | ENST00000333691 | PDLIM5 | chr4 | 95376535 | + | CCSER1 | chr4 | 92519723 | + |
intron-intron | ENST00000380176 | ENST00000432775 | PDLIM5 | chr4 | 95376535 | + | CCSER1 | chr4 | 92519723 | + |
intron-intron | ENST00000380176 | ENST00000504150 | PDLIM5 | chr4 | 95376535 | + | CCSER1 | chr4 | 92519723 | + |
In-frame | ENST00000359265 | ENST00000509176 | PDLIM5 | chr4 | 95376535 | + | CCSER1 | chr4 | 92519723 | + |
In-frame | ENST00000359265 | ENST00000333691 | PDLIM5 | chr4 | 95376535 | + | CCSER1 | chr4 | 92519723 | + |
5CDS-intron | ENST00000359265 | ENST00000432775 | PDLIM5 | chr4 | 95376535 | + | CCSER1 | chr4 | 92519723 | + |
5CDS-intron | ENST00000359265 | ENST00000504150 | PDLIM5 | chr4 | 95376535 | + | CCSER1 | chr4 | 92519723 | + |
Frame-shift | ENST00000512274 | ENST00000509176 | PDLIM5 | chr4 | 95376535 | + | CCSER1 | chr4 | 92519723 | + |
Frame-shift | ENST00000512274 | ENST00000333691 | PDLIM5 | chr4 | 95376535 | + | CCSER1 | chr4 | 92519723 | + |
5CDS-intron | ENST00000512274 | ENST00000432775 | PDLIM5 | chr4 | 95376535 | + | CCSER1 | chr4 | 92519723 | + |
5CDS-intron | ENST00000512274 | ENST00000504150 | PDLIM5 | chr4 | 95376535 | + | CCSER1 | chr4 | 92519723 | + |
In-frame | ENST00000504489 | ENST00000509176 | PDLIM5 | chr4 | 95376535 | + | CCSER1 | chr4 | 92519723 | + |
In-frame | ENST00000504489 | ENST00000333691 | PDLIM5 | chr4 | 95376535 | + | CCSER1 | chr4 | 92519723 | + |
5CDS-intron | ENST00000504489 | ENST00000432775 | PDLIM5 | chr4 | 95376535 | + | CCSER1 | chr4 | 92519723 | + |
5CDS-intron | ENST00000504489 | ENST00000504150 | PDLIM5 | chr4 | 95376535 | + | CCSER1 | chr4 | 92519723 | + |
Frame-shift | ENST00000450793 | ENST00000509176 | PDLIM5 | chr4 | 95507595 | + | CCSER1 | chr4 | 91389385 | + |
Frame-shift | ENST00000450793 | ENST00000333691 | PDLIM5 | chr4 | 95507595 | + | CCSER1 | chr4 | 91389385 | + |
Frame-shift | ENST00000450793 | ENST00000432775 | PDLIM5 | chr4 | 95507595 | + | CCSER1 | chr4 | 91389385 | + |
5CDS-intron | ENST00000450793 | ENST00000504150 | PDLIM5 | chr4 | 95507595 | + | CCSER1 | chr4 | 91389385 | + |
Frame-shift | ENST00000538141 | ENST00000509176 | PDLIM5 | chr4 | 95507595 | + | CCSER1 | chr4 | 91389385 | + |
Frame-shift | ENST00000538141 | ENST00000333691 | PDLIM5 | chr4 | 95507595 | + | CCSER1 | chr4 | 91389385 | + |
Frame-shift | ENST00000538141 | ENST00000432775 | PDLIM5 | chr4 | 95507595 | + | CCSER1 | chr4 | 91389385 | + |
5CDS-intron | ENST00000538141 | ENST00000504150 | PDLIM5 | chr4 | 95507595 | + | CCSER1 | chr4 | 91389385 | + |
Frame-shift | ENST00000380180 | ENST00000509176 | PDLIM5 | chr4 | 95507595 | + | CCSER1 | chr4 | 91389385 | + |
Frame-shift | ENST00000380180 | ENST00000333691 | PDLIM5 | chr4 | 95507595 | + | CCSER1 | chr4 | 91389385 | + |
Frame-shift | ENST00000380180 | ENST00000432775 | PDLIM5 | chr4 | 95507595 | + | CCSER1 | chr4 | 91389385 | + |
5CDS-intron | ENST00000380180 | ENST00000504150 | PDLIM5 | chr4 | 95507595 | + | CCSER1 | chr4 | 91389385 | + |
Frame-shift | ENST00000318007 | ENST00000509176 | PDLIM5 | chr4 | 95507595 | + | CCSER1 | chr4 | 91389385 | + |
Frame-shift | ENST00000318007 | ENST00000333691 | PDLIM5 | chr4 | 95507595 | + | CCSER1 | chr4 | 91389385 | + |
Frame-shift | ENST00000318007 | ENST00000432775 | PDLIM5 | chr4 | 95507595 | + | CCSER1 | chr4 | 91389385 | + |
5CDS-intron | ENST00000318007 | ENST00000504150 | PDLIM5 | chr4 | 95507595 | + | CCSER1 | chr4 | 91389385 | + |
Frame-shift | ENST00000437932 | ENST00000509176 | PDLIM5 | chr4 | 95507595 | + | CCSER1 | chr4 | 91389385 | + |
Frame-shift | ENST00000437932 | ENST00000333691 | PDLIM5 | chr4 | 95507595 | + | CCSER1 | chr4 | 91389385 | + |
Frame-shift | ENST00000437932 | ENST00000432775 | PDLIM5 | chr4 | 95507595 | + | CCSER1 | chr4 | 91389385 | + |
5CDS-intron | ENST00000437932 | ENST00000504150 | PDLIM5 | chr4 | 95507595 | + | CCSER1 | chr4 | 91389385 | + |
Frame-shift | ENST00000317968 | ENST00000509176 | PDLIM5 | chr4 | 95507595 | + | CCSER1 | chr4 | 91389385 | + |
Frame-shift | ENST00000317968 | ENST00000333691 | PDLIM5 | chr4 | 95507595 | + | CCSER1 | chr4 | 91389385 | + |
Frame-shift | ENST00000317968 | ENST00000432775 | PDLIM5 | chr4 | 95507595 | + | CCSER1 | chr4 | 91389385 | + |
5CDS-intron | ENST00000317968 | ENST00000504150 | PDLIM5 | chr4 | 95507595 | + | CCSER1 | chr4 | 91389385 | + |
Frame-shift | ENST00000542407 | ENST00000509176 | PDLIM5 | chr4 | 95507595 | + | CCSER1 | chr4 | 91389385 | + |
Frame-shift | ENST00000542407 | ENST00000333691 | PDLIM5 | chr4 | 95507595 | + | CCSER1 | chr4 | 91389385 | + |
Frame-shift | ENST00000542407 | ENST00000432775 | PDLIM5 | chr4 | 95507595 | + | CCSER1 | chr4 | 91389385 | + |
5CDS-intron | ENST00000542407 | ENST00000504150 | PDLIM5 | chr4 | 95507595 | + | CCSER1 | chr4 | 91389385 | + |
Frame-shift | ENST00000508216 | ENST00000509176 | PDLIM5 | chr4 | 95507595 | + | CCSER1 | chr4 | 91389385 | + |
Frame-shift | ENST00000508216 | ENST00000333691 | PDLIM5 | chr4 | 95507595 | + | CCSER1 | chr4 | 91389385 | + |
Frame-shift | ENST00000508216 | ENST00000432775 | PDLIM5 | chr4 | 95507595 | + | CCSER1 | chr4 | 91389385 | + |
5CDS-intron | ENST00000508216 | ENST00000504150 | PDLIM5 | chr4 | 95507595 | + | CCSER1 | chr4 | 91389385 | + |
Frame-shift | ENST00000514743 | ENST00000509176 | PDLIM5 | chr4 | 95507595 | + | CCSER1 | chr4 | 91389385 | + |
Frame-shift | ENST00000514743 | ENST00000333691 | PDLIM5 | chr4 | 95507595 | + | CCSER1 | chr4 | 91389385 | + |
Frame-shift | ENST00000514743 | ENST00000432775 | PDLIM5 | chr4 | 95507595 | + | CCSER1 | chr4 | 91389385 | + |
5CDS-intron | ENST00000514743 | ENST00000504150 | PDLIM5 | chr4 | 95507595 | + | CCSER1 | chr4 | 91389385 | + |
3UTR-3CDS | ENST00000380176 | ENST00000509176 | PDLIM5 | chr4 | 95507595 | + | CCSER1 | chr4 | 91389385 | + |
3UTR-3CDS | ENST00000380176 | ENST00000333691 | PDLIM5 | chr4 | 95507595 | + | CCSER1 | chr4 | 91389385 | + |
3UTR-3CDS | ENST00000380176 | ENST00000432775 | PDLIM5 | chr4 | 95507595 | + | CCSER1 | chr4 | 91389385 | + |
3UTR-intron | ENST00000380176 | ENST00000504150 | PDLIM5 | chr4 | 95507595 | + | CCSER1 | chr4 | 91389385 | + |
intron-3CDS | ENST00000359265 | ENST00000509176 | PDLIM5 | chr4 | 95507595 | + | CCSER1 | chr4 | 91389385 | + |
intron-3CDS | ENST00000359265 | ENST00000333691 | PDLIM5 | chr4 | 95507595 | + | CCSER1 | chr4 | 91389385 | + |
intron-3CDS | ENST00000359265 | ENST00000432775 | PDLIM5 | chr4 | 95507595 | + | CCSER1 | chr4 | 91389385 | + |
intron-intron | ENST00000359265 | ENST00000504150 | PDLIM5 | chr4 | 95507595 | + | CCSER1 | chr4 | 91389385 | + |
intron-3CDS | ENST00000512274 | ENST00000509176 | PDLIM5 | chr4 | 95507595 | + | CCSER1 | chr4 | 91389385 | + |
intron-3CDS | ENST00000512274 | ENST00000333691 | PDLIM5 | chr4 | 95507595 | + | CCSER1 | chr4 | 91389385 | + |
intron-3CDS | ENST00000512274 | ENST00000432775 | PDLIM5 | chr4 | 95507595 | + | CCSER1 | chr4 | 91389385 | + |
intron-intron | ENST00000512274 | ENST00000504150 | PDLIM5 | chr4 | 95507595 | + | CCSER1 | chr4 | 91389385 | + |
intron-3CDS | ENST00000504489 | ENST00000509176 | PDLIM5 | chr4 | 95507595 | + | CCSER1 | chr4 | 91389385 | + |
intron-3CDS | ENST00000504489 | ENST00000333691 | PDLIM5 | chr4 | 95507595 | + | CCSER1 | chr4 | 91389385 | + |
intron-3CDS | ENST00000504489 | ENST00000432775 | PDLIM5 | chr4 | 95507595 | + | CCSER1 | chr4 | 91389385 | + |
intron-intron | ENST00000504489 | ENST00000504150 | PDLIM5 | chr4 | 95507595 | + | CCSER1 | chr4 | 91389385 | + |
ORFfinder result based on the fusion transcript sequence of in-frame fusion genes. |
Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | Seq length (transcript) | BP loci (transcript) | Predicted start (transcript) | Predicted stop (transcript) | Seq length (amino acids) |
ENST00000450793 | PDLIM5 | chr4 | 95376535 | + | ENST00000509176 | CCSER1 | chr4 | 92519723 | + | 3589 | 247 | 151 | 732 | 193 |
ENST00000450793 | PDLIM5 | chr4 | 95376535 | + | ENST00000333691 | CCSER1 | chr4 | 92519723 | + | 733 | 247 | 151 | 732 | 194 |
ENST00000538141 | PDLIM5 | chr4 | 95376535 | + | ENST00000509176 | CCSER1 | chr4 | 92519723 | + | 3589 | 247 | 151 | 732 | 193 |
ENST00000538141 | PDLIM5 | chr4 | 95376535 | + | ENST00000333691 | CCSER1 | chr4 | 92519723 | + | 733 | 247 | 151 | 732 | 194 |
ENST00000380180 | PDLIM5 | chr4 | 95376535 | + | ENST00000509176 | CCSER1 | chr4 | 92519723 | + | 3589 | 247 | 151 | 732 | 193 |
ENST00000380180 | PDLIM5 | chr4 | 95376535 | + | ENST00000333691 | CCSER1 | chr4 | 92519723 | + | 733 | 247 | 151 | 732 | 194 |
ENST00000318007 | PDLIM5 | chr4 | 95376535 | + | ENST00000509176 | CCSER1 | chr4 | 92519723 | + | 3589 | 247 | 151 | 732 | 193 |
ENST00000318007 | PDLIM5 | chr4 | 95376535 | + | ENST00000333691 | CCSER1 | chr4 | 92519723 | + | 733 | 247 | 151 | 732 | 194 |
ENST00000437932 | PDLIM5 | chr4 | 95376535 | + | ENST00000509176 | CCSER1 | chr4 | 92519723 | + | 3589 | 247 | 151 | 732 | 193 |
ENST00000437932 | PDLIM5 | chr4 | 95376535 | + | ENST00000333691 | CCSER1 | chr4 | 92519723 | + | 733 | 247 | 151 | 732 | 194 |
ENST00000317968 | PDLIM5 | chr4 | 95376535 | + | ENST00000509176 | CCSER1 | chr4 | 92519723 | + | 3574 | 232 | 136 | 717 | 193 |
ENST00000317968 | PDLIM5 | chr4 | 95376535 | + | ENST00000333691 | CCSER1 | chr4 | 92519723 | + | 718 | 232 | 136 | 717 | 194 |
ENST00000508216 | PDLIM5 | chr4 | 95376535 | + | ENST00000509176 | CCSER1 | chr4 | 92519723 | + | 3482 | 140 | 44 | 625 | 193 |
ENST00000508216 | PDLIM5 | chr4 | 95376535 | + | ENST00000333691 | CCSER1 | chr4 | 92519723 | + | 626 | 140 | 44 | 625 | 194 |
ENST00000514743 | PDLIM5 | chr4 | 95376535 | + | ENST00000509176 | CCSER1 | chr4 | 92519723 | + | 3482 | 140 | 44 | 625 | 193 |
ENST00000514743 | PDLIM5 | chr4 | 95376535 | + | ENST00000333691 | CCSER1 | chr4 | 92519723 | + | 626 | 140 | 44 | 625 | 194 |
ENST00000359265 | PDLIM5 | chr4 | 95376535 | + | ENST00000509176 | CCSER1 | chr4 | 92519723 | + | 3590 | 248 | 152 | 733 | 193 |
ENST00000359265 | PDLIM5 | chr4 | 95376535 | + | ENST00000333691 | CCSER1 | chr4 | 92519723 | + | 734 | 248 | 152 | 733 | 194 |
ENST00000504489 | PDLIM5 | chr4 | 95376535 | + | ENST00000509176 | CCSER1 | chr4 | 92519723 | + | 3534 | 192 | 96 | 677 | 193 |
ENST00000504489 | PDLIM5 | chr4 | 95376535 | + | ENST00000333691 | CCSER1 | chr4 | 92519723 | + | 678 | 192 | 96 | 677 | 193 |
DeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated. |
Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | No-coding score | Coding score |
ENST00000450793 | ENST00000509176 | PDLIM5 | chr4 | 95376535 | + | CCSER1 | chr4 | 92519723 | + | 0.010140827 | 0.98985916 |
ENST00000450793 | ENST00000333691 | PDLIM5 | chr4 | 95376535 | + | CCSER1 | chr4 | 92519723 | + | 0.048435472 | 0.9515645 |
ENST00000538141 | ENST00000509176 | PDLIM5 | chr4 | 95376535 | + | CCSER1 | chr4 | 92519723 | + | 0.010140827 | 0.98985916 |
ENST00000538141 | ENST00000333691 | PDLIM5 | chr4 | 95376535 | + | CCSER1 | chr4 | 92519723 | + | 0.048435472 | 0.9515645 |
ENST00000380180 | ENST00000509176 | PDLIM5 | chr4 | 95376535 | + | CCSER1 | chr4 | 92519723 | + | 0.010140827 | 0.98985916 |
ENST00000380180 | ENST00000333691 | PDLIM5 | chr4 | 95376535 | + | CCSER1 | chr4 | 92519723 | + | 0.048435472 | 0.9515645 |
ENST00000318007 | ENST00000509176 | PDLIM5 | chr4 | 95376535 | + | CCSER1 | chr4 | 92519723 | + | 0.010140827 | 0.98985916 |
ENST00000318007 | ENST00000333691 | PDLIM5 | chr4 | 95376535 | + | CCSER1 | chr4 | 92519723 | + | 0.048435472 | 0.9515645 |
ENST00000437932 | ENST00000509176 | PDLIM5 | chr4 | 95376535 | + | CCSER1 | chr4 | 92519723 | + | 0.010140827 | 0.98985916 |
ENST00000437932 | ENST00000333691 | PDLIM5 | chr4 | 95376535 | + | CCSER1 | chr4 | 92519723 | + | 0.048435472 | 0.9515645 |
ENST00000317968 | ENST00000509176 | PDLIM5 | chr4 | 95376535 | + | CCSER1 | chr4 | 92519723 | + | 0.010174277 | 0.9898258 |
ENST00000317968 | ENST00000333691 | PDLIM5 | chr4 | 95376535 | + | CCSER1 | chr4 | 92519723 | + | 0.052494906 | 0.9475052 |
ENST00000508216 | ENST00000509176 | PDLIM5 | chr4 | 95376535 | + | CCSER1 | chr4 | 92519723 | + | 0.009991627 | 0.99000835 |
ENST00000508216 | ENST00000333691 | PDLIM5 | chr4 | 95376535 | + | CCSER1 | chr4 | 92519723 | + | 0.041211486 | 0.9587886 |
ENST00000514743 | ENST00000509176 | PDLIM5 | chr4 | 95376535 | + | CCSER1 | chr4 | 92519723 | + | 0.009991627 | 0.99000835 |
ENST00000514743 | ENST00000333691 | PDLIM5 | chr4 | 95376535 | + | CCSER1 | chr4 | 92519723 | + | 0.041211486 | 0.9587886 |
ENST00000359265 | ENST00000509176 | PDLIM5 | chr4 | 95376535 | + | CCSER1 | chr4 | 92519723 | + | 0.010214472 | 0.9897856 |
ENST00000359265 | ENST00000333691 | PDLIM5 | chr4 | 95376535 | + | CCSER1 | chr4 | 92519723 | + | 0.05116164 | 0.94883835 |
ENST00000504489 | ENST00000509176 | PDLIM5 | chr4 | 95376535 | + | CCSER1 | chr4 | 92519723 | + | 0.009939872 | 0.9900601 |
ENST00000504489 | ENST00000333691 | PDLIM5 | chr4 | 95376535 | + | CCSER1 | chr4 | 92519723 | + | 0.043860342 | 0.9561396 |
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Fusion Genomic Features for PDLIM5-CCSER1 |
FusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints. |
Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | 1-p | p (fusion gene breakpoint) |
PDLIM5 | chr4 | 95507595 | + | CCSER1 | chr4 | 91389384 | + | 0.030028353 | 0.96997166 |
PDLIM5 | chr4 | 95376535 | + | CCSER1 | chr4 | 92519722 | + | 4.53E-05 | 0.9999547 |
PDLIM5 | chr4 | 95507595 | + | CCSER1 | chr4 | 91389384 | + | 0.030028353 | 0.96997166 |
PDLIM5 | chr4 | 95376535 | + | CCSER1 | chr4 | 92519722 | + | 4.53E-05 | 0.9999547 |
Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page. |
Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page. |
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Fusion Protein Features for PDLIM5-CCSER1 |
Go to FGviewer for the breakpoints of chr4:95376535-chr4:92519723 - FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels. |
Main function of each fusion partner protein. (from UniProt) |
Hgene | Tgene |
. | CCSER1 |
FUNCTION: Might normally function as a transcriptional repressor. EWS-fusion-proteins (EFPS) may play a role in the tumorigenic process. They may disturb gene expression by mimicking, or interfering with the normal function of CTD-POLII within the transcription initiation complex. They may also contribute to an aberrant activation of the fusion protein target genes. |
Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Tgene | CCSER1 | chr4:95376535 | chr4:92519723 | ENST00000432775 | 0 | 8 | 673_707 | 0 | 678.0 | Coiled coil | Ontology_term=ECO:0000255 | |
Tgene | CCSER1 | chr4:95376535 | chr4:92519723 | ENST00000432775 | 0 | 8 | 495_498 | 0 | 678.0 | Compositional bias | Note=Poly-Ser | |
Tgene | CCSER1 | chr4:95376535 | chr4:92519723 | ENST00000432775 | 0 | 8 | 4_69 | 0 | 678.0 | Compositional bias | Note=Ser-rich |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | PDLIM5 | chr4:95376535 | chr4:92519723 | ENST00000317968 | + | 2 | 13 | 2_85 | 32.0 | 597.0 | Domain | PDZ |
Hgene | PDLIM5 | chr4:95376535 | chr4:92519723 | ENST00000317968 | + | 2 | 13 | 418_477 | 32.0 | 597.0 | Domain | LIM zinc-binding 1 |
Hgene | PDLIM5 | chr4:95376535 | chr4:92519723 | ENST00000317968 | + | 2 | 13 | 477_536 | 32.0 | 597.0 | Domain | LIM zinc-binding 2 |
Hgene | PDLIM5 | chr4:95376535 | chr4:92519723 | ENST00000317968 | + | 2 | 13 | 536_596 | 32.0 | 597.0 | Domain | LIM zinc-binding 3 |
Hgene | PDLIM5 | chr4:95376535 | chr4:92519723 | ENST00000318007 | + | 2 | 10 | 2_85 | 32.0 | 215.0 | Domain | PDZ |
Hgene | PDLIM5 | chr4:95376535 | chr4:92519723 | ENST00000318007 | + | 2 | 10 | 418_477 | 32.0 | 215.0 | Domain | LIM zinc-binding 1 |
Hgene | PDLIM5 | chr4:95376535 | chr4:92519723 | ENST00000318007 | + | 2 | 10 | 477_536 | 32.0 | 215.0 | Domain | LIM zinc-binding 2 |
Hgene | PDLIM5 | chr4:95376535 | chr4:92519723 | ENST00000318007 | + | 2 | 10 | 536_596 | 32.0 | 215.0 | Domain | LIM zinc-binding 3 |
Hgene | PDLIM5 | chr4:95376535 | chr4:92519723 | ENST00000359265 | + | 2 | 3 | 2_85 | 32.0 | 137.0 | Domain | PDZ |
Hgene | PDLIM5 | chr4:95376535 | chr4:92519723 | ENST00000359265 | + | 2 | 3 | 418_477 | 32.0 | 137.0 | Domain | LIM zinc-binding 1 |
Hgene | PDLIM5 | chr4:95376535 | chr4:92519723 | ENST00000359265 | + | 2 | 3 | 477_536 | 32.0 | 137.0 | Domain | LIM zinc-binding 2 |
Hgene | PDLIM5 | chr4:95376535 | chr4:92519723 | ENST00000359265 | + | 2 | 3 | 536_596 | 32.0 | 137.0 | Domain | LIM zinc-binding 3 |
Hgene | PDLIM5 | chr4:95376535 | chr4:92519723 | ENST00000380180 | + | 2 | 9 | 2_85 | 32.0 | 235.0 | Domain | PDZ |
Hgene | PDLIM5 | chr4:95376535 | chr4:92519723 | ENST00000380180 | + | 2 | 9 | 418_477 | 32.0 | 235.0 | Domain | LIM zinc-binding 1 |
Hgene | PDLIM5 | chr4:95376535 | chr4:92519723 | ENST00000380180 | + | 2 | 9 | 477_536 | 32.0 | 235.0 | Domain | LIM zinc-binding 2 |
Hgene | PDLIM5 | chr4:95376535 | chr4:92519723 | ENST00000380180 | + | 2 | 9 | 536_596 | 32.0 | 235.0 | Domain | LIM zinc-binding 3 |
Hgene | PDLIM5 | chr4:95376535 | chr4:92519723 | ENST00000437932 | + | 2 | 13 | 2_85 | 32.0 | 488.0 | Domain | PDZ |
Hgene | PDLIM5 | chr4:95376535 | chr4:92519723 | ENST00000437932 | + | 2 | 13 | 418_477 | 32.0 | 488.0 | Domain | LIM zinc-binding 1 |
Hgene | PDLIM5 | chr4:95376535 | chr4:92519723 | ENST00000437932 | + | 2 | 13 | 477_536 | 32.0 | 488.0 | Domain | LIM zinc-binding 2 |
Hgene | PDLIM5 | chr4:95376535 | chr4:92519723 | ENST00000437932 | + | 2 | 13 | 536_596 | 32.0 | 488.0 | Domain | LIM zinc-binding 3 |
Hgene | PDLIM5 | chr4:95376535 | chr4:92519723 | ENST00000508216 | + | 1 | 8 | 2_85 | 32.0 | 235.0 | Domain | PDZ |
Hgene | PDLIM5 | chr4:95376535 | chr4:92519723 | ENST00000508216 | + | 1 | 8 | 418_477 | 32.0 | 235.0 | Domain | LIM zinc-binding 1 |
Hgene | PDLIM5 | chr4:95376535 | chr4:92519723 | ENST00000508216 | + | 1 | 8 | 477_536 | 32.0 | 235.0 | Domain | LIM zinc-binding 2 |
Hgene | PDLIM5 | chr4:95376535 | chr4:92519723 | ENST00000508216 | + | 1 | 8 | 536_596 | 32.0 | 235.0 | Domain | LIM zinc-binding 3 |
Tgene | CCSER1 | chr4:95376535 | chr4:92519723 | ENST00000333691 | 9 | 11 | 673_707 | 739.0 | 901.0 | Coiled coil | Ontology_term=ECO:0000255 | |
Tgene | CCSER1 | chr4:95376535 | chr4:92519723 | ENST00000509176 | 9 | 11 | 673_707 | 739.0 | 901.0 | Coiled coil | Ontology_term=ECO:0000255 | |
Tgene | CCSER1 | chr4:95376535 | chr4:92519723 | ENST00000333691 | 9 | 11 | 495_498 | 739.0 | 901.0 | Compositional bias | Note=Poly-Ser | |
Tgene | CCSER1 | chr4:95376535 | chr4:92519723 | ENST00000333691 | 9 | 11 | 4_69 | 739.0 | 901.0 | Compositional bias | Note=Ser-rich | |
Tgene | CCSER1 | chr4:95376535 | chr4:92519723 | ENST00000509176 | 9 | 11 | 495_498 | 739.0 | 901.0 | Compositional bias | Note=Poly-Ser | |
Tgene | CCSER1 | chr4:95376535 | chr4:92519723 | ENST00000509176 | 9 | 11 | 4_69 | 739.0 | 901.0 | Compositional bias | Note=Ser-rich |
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Fusion Gene Sequence for PDLIM5-CCSER1 |
For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones. |
>In-frame_ENST00000450793_ENST00000509176_TCGA-NA-A4R0-01A_PDLIM5_chr4_95376535_+_CCSER1_chr4_92519723_length(transcript)=3589nt_BP=247nt AGCCAGGAGGCGGAAGTTCCCGCGGGCGGTGGGGACGGCGCCCTCACCGCGAGTCACTTGTCAGCCCTTGTCTGAGGCGGAGGCAGCCCC GCGCCGCGCCGGACCCGAGCATATTTCATTTTCTGTCATTGGACTTTGAGCCATTAGAACCATGAGCAACTACAGTGTGTCACTGGTTGG CCCAGCTCCTTGGGGTTTCCGGCTGCAGGGCGGTAAGGATTTCAACATGCCTCTGACAATCTCTAGTGCTACATATCGAAATCGAATTGT GAGCCAAAATCTCAGCACAAGGGACAGAAAAGCAATACATACTCCCACCGAGGACCGTTTTAGGTATTCGGCAGCGGACCAGACAAGCCC CTACAAAAACAAGACCTGTCAACTCCCAAGTCTCTGTTTAAGTAATTTCCTGAAGGACAAGGAACTAGCAGAAGTTATCAAACATTCAAG AGGAACTTATGAAACCCTCACTTCAGACGTTACACAGAACTTACGGGCCACCGTTGGGCAGAGCTCTCTGAAGCCAACAGCTAAGACAGA AGGGCTCTCCACGTTCTTAGAGAAACCAAAGGACCAAGTTGCTACGGCCCGACAGCATTCGACCTTTACAGGCAGGTTTGGACAGCCACC CAGAGGGCCAATCTCTTTACACATGTACAGCAGGAAGAATGTGTTTCTCCACCACAATTTACACAGCACTGAGCTGCAAACTCTAGGCCA GCAGGATGGGTAATTAAATCACCGTATTCCTGTCTTTGGGTAGGATAAAGATGGTTAGTGTTTCTCGTGCATAGTTCATATTAAAATTGT CATGTACTTTTTCTTACATTTTAGTTATAAACAGAGTTGTGTTGTTGGGTTTTTTTTCTTAGTCATAAACAAAGACTTGTGGGTTTTTTT TTTCCAAGAGTGAAAGTTTGAGCATGTTAATTGAACTAGGTTGCATTGCCTTGAAGACTTTACTATATAGGTGTATAATAAATGGGACCA TCATGATCGTTTATATAGTCCATAATTTATTTATTTTTTATCTCTATCACTTACTGATATGCATTAAGGTTTCAGAAGATAATATCAAAT AGCAATCTGTTCACTGTTAATGGTGTTACTATAAAAGTAGACCTGATGAAAAATAGATAAAGGAATTATAAAGAATTTTAAATTATATAA TTAATAGAAGGAGGAAAAAAGAGAAATGTTAACGTCTTATATTTGGTGGTATATTTATTTGAAGAATGTGGCTTGCTTGCATGTAACCTA GAGATGTGTTTGTCTCTATTACATACATTCAAGCTCATCTTGTGATACTAGTAAGGGGGAAATGGCTGTATTTTTTTTCCTTTAAACGTT TAGTTCATACTAGTTCACAAAGGATTTCAGACAGAGTAATTGCTAGCCAAATAGAGAATGACAGCTCTGATCTTTGAAAAATTTTGCTTT TAGTTTTTGTTATTGATGTTGAAGTACCGTGACATAACACAAGGTGATAAAGTTGGTTGAATTTTGTCAGATGATGCATAAATACTGACA TGCTATATTCTTTGAGCCACTGTCATGGCAATATAAACATTTTTTCAAAATTTCAAGGATGAAACATCCTAAGAAAATTATTCTTTTTCT TTACTTTCCTTATTTTTTAAAATGTTCTTTTTTATGTAAATCCAATTTTGGTTTATATACATCAACCCATATCTATAATTTTATGAACTG AAGAACAGAAAGTCAGTATTTTAGTAGCCAGCATACAATATTCTGACTATGCAGAAATCTAGATTTGGAACAAAAGTAAAGTAAATGTGA ACATTGGCAATTTAATCTTAGAAATAAGCTTCTAACAGGAATATTTAAAACCCATTTGATGGCAAATATTTCTCTTTGACAAATAAGGCC CAAATATGTTATAATATGTTATATACTTATGTGCACTTTAGATCAATATATGAATTGATCTATGGATAATTCCATCATGTTCAATTAGTA GCAGAGCAGAATCAAAGAGTACAATTGAATACATAAATAAATAATTTTTAAAAGACTAATAGGAATCAAGGCTGCAGTTTTCTTATACAC ATCAGAGCTGTTAAGTACATCCACATTAGCCATAGTCCATGCAAATTGAAACTGTCATACCTACTGCATGATCTGTTTCCCTTGCATTTT CTAACAGAATCTGTCAGCGTGCACAAGCAAGATGAACAAAGGGAAATTGAGATAGCAGTTTTAGCATGGCATCTGACAACTTGCTTAAAT TAAAGCTGTGTGCAAAATGCATCTCCTATTATAAAAATGTATTTGTGCCCTGTGCTTTGGGGAAAAGCCATTAGACACTCCACCCCTGAG CTTTAACTACTGAACTTTGATACATTTGCAAACTTAGATTGGAACTGATAAAGTAAGGAGTCGAGTGGATATGTTGTACTTGTAATTTTG GTTTTCCAAAGGAACACACATGTGCATCAAGGCAGACATTTGCCAAATGTTTTCTTTCTTTGCGTGTTTGTAATTCTGCCAAAAGAGAAC AATATACACTGCAAATTGCTTGACTTAATGAGATTGCCATCTAAAGTTCCCACCATACTTTGGAAGCTATAATGATCATGCAGATATACA CTTTGGGCTGGGCAATATTTAAGAAATGATAGGAAAATAGAAAAATCATGATTATTAATTGTGGAATTCAGCTTGATTTGTCCTAAATGT TGGTGTCTGTTGCTAGAGTATTTTAAATCTGTACATAAATAAGCATGATAAAATAATCAAGGATTTTTTCCCAGGATATGGAAGAACTAT GTATCACAAATAATGTTTTTGATTTGGACTTTTGGAGTTGATAGTTTTGTTTTCCTGGAAGATAGACTTTTGAATTATACTTTATAAAAA TAATCTATTTATAGAAGATCTGTCATTTAATAGACATTTTAAGAGATGTTTTAAACGCTAGTATTTTCTTGAAAAATCTTTTTTAAAGCT GAATCATTCAAAAGAAAACCTGGATTAAACAGTTCGATTTTAAAAGGAAGGGTATTTTTTGGAAATATCATCTTAAAGCTGTTTTGTATC AGTATTTTCAACATTGTTATAATATTATTTGTAATACTAAGTGTAACTCAGGCCTGGAGAAGGTGTAAGCCCACTATGCTAATGTACATC AGTAACTGTAAAACAGGGGTTCTTTGTAAGTTCCTCTTGTGTATATATAGTAACTTATAACAATGGCATGTGGGCATTCTTTCAGTGAAT TGCTTTCTTTGTACTAAAATCTCTAGTTTTCTAAGACAGTTCCATGTATAAAAATGATTTATGCATTTCTCCAAGGCGGTACATATCCAA AGACATGACACCAGGGGGAAAAAGTGCTTGTTTTTCTGATGGAAGCAGTGGTCTTTTCTTTTCTTTCCTCTTTCTTTTGTGCATGTGTAT GTGTAGCTAAGCCTAAATAACCCTGTAAAATTTCTGCTGCAAATTGTCTCTTCTGAATTTAGAATGTGTTTTAAAGGAACACTTAGGAAG >In-frame_ENST00000450793_ENST00000509176_TCGA-NA-A4R0-01A_PDLIM5_chr4_95376535_+_CCSER1_chr4_92519723_length(amino acids)=193AA_start in transcript=151_stop in transcript=732 MSNYSVSLVGPAPWGFRLQGGKDFNMPLTISSATYRNRIVSQNLSTRDRKAIHTPTEDRFRYSAADQTSPYKNKTCQLPSLCLSNFLKDK ELAEVIKHSRGTYETLTSDVTQNLRATVGQSSLKPTAKTEGLSTFLEKPKDQVATARQHSTFTGRFGQPPRGPISLHMYSRKNVFLHHNL -------------------------------------------------------------- >In-frame_ENST00000450793_ENST00000333691_TCGA-NA-A4R0-01A_PDLIM5_chr4_95376535_+_CCSER1_chr4_92519723_length(transcript)=733nt_BP=247nt AGCCAGGAGGCGGAAGTTCCCGCGGGCGGTGGGGACGGCGCCCTCACCGCGAGTCACTTGTCAGCCCTTGTCTGAGGCGGAGGCAGCCCC GCGCCGCGCCGGACCCGAGCATATTTCATTTTCTGTCATTGGACTTTGAGCCATTAGAACCATGAGCAACTACAGTGTGTCACTGGTTGG CCCAGCTCCTTGGGGTTTCCGGCTGCAGGGCGGTAAGGATTTCAACATGCCTCTGACAATCTCTAGTGCTACATATCGAAATCGAATTGT GAGCCAAAATCTCAGCACAAGGGACAGAAAAGCAATACATACTCCCACCGAGGACCGTTTTAGGTATTCGGCAGCGGACCAGACAAGCCC CTACAAAAACAAGACCTGTCAACTCCCAAGTCTCTGTTTAAGTAATTTCCTGAAGGACAAGGAACTAGCAGAAGTTATCAAACATTCAAG AGGAACTTATGAAACCCTCACTTCAGACGTTACACAGAACTTACGGGCCACCGTTGGGCAGAGCTCTCTGAAGCCAACAGCTAAGACAGA AGGGCTCTCCACGTTCTTAGAGAAACCAAAGGACCAAGTTGCTACGGCCCGACAGCATTCGACCTTTACAGGCAGGTTTGGACAGCCACC CAGAGGGCCAATCTCTTTACACATGTACAGCAGGAAGAATGTGTTTCTCCACCACAATTTACACAGCACTGAGCTGCAAACTCTAGGCCA >In-frame_ENST00000450793_ENST00000333691_TCGA-NA-A4R0-01A_PDLIM5_chr4_95376535_+_CCSER1_chr4_92519723_length(amino acids)=194AA_start in transcript=151_stop in transcript=732 MSNYSVSLVGPAPWGFRLQGGKDFNMPLTISSATYRNRIVSQNLSTRDRKAIHTPTEDRFRYSAADQTSPYKNKTCQLPSLCLSNFLKDK ELAEVIKHSRGTYETLTSDVTQNLRATVGQSSLKPTAKTEGLSTFLEKPKDQVATARQHSTFTGRFGQPPRGPISLHMYSRKNVFLHHNL -------------------------------------------------------------- >In-frame_ENST00000538141_ENST00000509176_TCGA-NA-A4R0-01A_PDLIM5_chr4_95376535_+_CCSER1_chr4_92519723_length(transcript)=3589nt_BP=247nt AGCCAGGAGGCGGAAGTTCCCGCGGGCGGTGGGGACGGCGCCCTCACCGCGAGTCACTTGTCAGCCCTTGTCTGAGGCGGAGGCAGCCCC GCGCCGCGCCGGACCCGAGCATATTTCATTTTCTGTCATTGGACTTTGAGCCATTAGAACCATGAGCAACTACAGTGTGTCACTGGTTGG CCCAGCTCCTTGGGGTTTCCGGCTGCAGGGCGGTAAGGATTTCAACATGCCTCTGACAATCTCTAGTGCTACATATCGAAATCGAATTGT GAGCCAAAATCTCAGCACAAGGGACAGAAAAGCAATACATACTCCCACCGAGGACCGTTTTAGGTATTCGGCAGCGGACCAGACAAGCCC CTACAAAAACAAGACCTGTCAACTCCCAAGTCTCTGTTTAAGTAATTTCCTGAAGGACAAGGAACTAGCAGAAGTTATCAAACATTCAAG AGGAACTTATGAAACCCTCACTTCAGACGTTACACAGAACTTACGGGCCACCGTTGGGCAGAGCTCTCTGAAGCCAACAGCTAAGACAGA AGGGCTCTCCACGTTCTTAGAGAAACCAAAGGACCAAGTTGCTACGGCCCGACAGCATTCGACCTTTACAGGCAGGTTTGGACAGCCACC CAGAGGGCCAATCTCTTTACACATGTACAGCAGGAAGAATGTGTTTCTCCACCACAATTTACACAGCACTGAGCTGCAAACTCTAGGCCA GCAGGATGGGTAATTAAATCACCGTATTCCTGTCTTTGGGTAGGATAAAGATGGTTAGTGTTTCTCGTGCATAGTTCATATTAAAATTGT CATGTACTTTTTCTTACATTTTAGTTATAAACAGAGTTGTGTTGTTGGGTTTTTTTTCTTAGTCATAAACAAAGACTTGTGGGTTTTTTT TTTCCAAGAGTGAAAGTTTGAGCATGTTAATTGAACTAGGTTGCATTGCCTTGAAGACTTTACTATATAGGTGTATAATAAATGGGACCA TCATGATCGTTTATATAGTCCATAATTTATTTATTTTTTATCTCTATCACTTACTGATATGCATTAAGGTTTCAGAAGATAATATCAAAT AGCAATCTGTTCACTGTTAATGGTGTTACTATAAAAGTAGACCTGATGAAAAATAGATAAAGGAATTATAAAGAATTTTAAATTATATAA TTAATAGAAGGAGGAAAAAAGAGAAATGTTAACGTCTTATATTTGGTGGTATATTTATTTGAAGAATGTGGCTTGCTTGCATGTAACCTA GAGATGTGTTTGTCTCTATTACATACATTCAAGCTCATCTTGTGATACTAGTAAGGGGGAAATGGCTGTATTTTTTTTCCTTTAAACGTT TAGTTCATACTAGTTCACAAAGGATTTCAGACAGAGTAATTGCTAGCCAAATAGAGAATGACAGCTCTGATCTTTGAAAAATTTTGCTTT TAGTTTTTGTTATTGATGTTGAAGTACCGTGACATAACACAAGGTGATAAAGTTGGTTGAATTTTGTCAGATGATGCATAAATACTGACA TGCTATATTCTTTGAGCCACTGTCATGGCAATATAAACATTTTTTCAAAATTTCAAGGATGAAACATCCTAAGAAAATTATTCTTTTTCT TTACTTTCCTTATTTTTTAAAATGTTCTTTTTTATGTAAATCCAATTTTGGTTTATATACATCAACCCATATCTATAATTTTATGAACTG AAGAACAGAAAGTCAGTATTTTAGTAGCCAGCATACAATATTCTGACTATGCAGAAATCTAGATTTGGAACAAAAGTAAAGTAAATGTGA ACATTGGCAATTTAATCTTAGAAATAAGCTTCTAACAGGAATATTTAAAACCCATTTGATGGCAAATATTTCTCTTTGACAAATAAGGCC CAAATATGTTATAATATGTTATATACTTATGTGCACTTTAGATCAATATATGAATTGATCTATGGATAATTCCATCATGTTCAATTAGTA GCAGAGCAGAATCAAAGAGTACAATTGAATACATAAATAAATAATTTTTAAAAGACTAATAGGAATCAAGGCTGCAGTTTTCTTATACAC ATCAGAGCTGTTAAGTACATCCACATTAGCCATAGTCCATGCAAATTGAAACTGTCATACCTACTGCATGATCTGTTTCCCTTGCATTTT CTAACAGAATCTGTCAGCGTGCACAAGCAAGATGAACAAAGGGAAATTGAGATAGCAGTTTTAGCATGGCATCTGACAACTTGCTTAAAT TAAAGCTGTGTGCAAAATGCATCTCCTATTATAAAAATGTATTTGTGCCCTGTGCTTTGGGGAAAAGCCATTAGACACTCCACCCCTGAG CTTTAACTACTGAACTTTGATACATTTGCAAACTTAGATTGGAACTGATAAAGTAAGGAGTCGAGTGGATATGTTGTACTTGTAATTTTG GTTTTCCAAAGGAACACACATGTGCATCAAGGCAGACATTTGCCAAATGTTTTCTTTCTTTGCGTGTTTGTAATTCTGCCAAAAGAGAAC AATATACACTGCAAATTGCTTGACTTAATGAGATTGCCATCTAAAGTTCCCACCATACTTTGGAAGCTATAATGATCATGCAGATATACA CTTTGGGCTGGGCAATATTTAAGAAATGATAGGAAAATAGAAAAATCATGATTATTAATTGTGGAATTCAGCTTGATTTGTCCTAAATGT TGGTGTCTGTTGCTAGAGTATTTTAAATCTGTACATAAATAAGCATGATAAAATAATCAAGGATTTTTTCCCAGGATATGGAAGAACTAT GTATCACAAATAATGTTTTTGATTTGGACTTTTGGAGTTGATAGTTTTGTTTTCCTGGAAGATAGACTTTTGAATTATACTTTATAAAAA TAATCTATTTATAGAAGATCTGTCATTTAATAGACATTTTAAGAGATGTTTTAAACGCTAGTATTTTCTTGAAAAATCTTTTTTAAAGCT GAATCATTCAAAAGAAAACCTGGATTAAACAGTTCGATTTTAAAAGGAAGGGTATTTTTTGGAAATATCATCTTAAAGCTGTTTTGTATC AGTATTTTCAACATTGTTATAATATTATTTGTAATACTAAGTGTAACTCAGGCCTGGAGAAGGTGTAAGCCCACTATGCTAATGTACATC AGTAACTGTAAAACAGGGGTTCTTTGTAAGTTCCTCTTGTGTATATATAGTAACTTATAACAATGGCATGTGGGCATTCTTTCAGTGAAT TGCTTTCTTTGTACTAAAATCTCTAGTTTTCTAAGACAGTTCCATGTATAAAAATGATTTATGCATTTCTCCAAGGCGGTACATATCCAA AGACATGACACCAGGGGGAAAAAGTGCTTGTTTTTCTGATGGAAGCAGTGGTCTTTTCTTTTCTTTCCTCTTTCTTTTGTGCATGTGTAT GTGTAGCTAAGCCTAAATAACCCTGTAAAATTTCTGCTGCAAATTGTCTCTTCTGAATTTAGAATGTGTTTTAAAGGAACACTTAGGAAG >In-frame_ENST00000538141_ENST00000509176_TCGA-NA-A4R0-01A_PDLIM5_chr4_95376535_+_CCSER1_chr4_92519723_length(amino acids)=193AA_start in transcript=151_stop in transcript=732 MSNYSVSLVGPAPWGFRLQGGKDFNMPLTISSATYRNRIVSQNLSTRDRKAIHTPTEDRFRYSAADQTSPYKNKTCQLPSLCLSNFLKDK ELAEVIKHSRGTYETLTSDVTQNLRATVGQSSLKPTAKTEGLSTFLEKPKDQVATARQHSTFTGRFGQPPRGPISLHMYSRKNVFLHHNL -------------------------------------------------------------- >In-frame_ENST00000538141_ENST00000333691_TCGA-NA-A4R0-01A_PDLIM5_chr4_95376535_+_CCSER1_chr4_92519723_length(transcript)=733nt_BP=247nt AGCCAGGAGGCGGAAGTTCCCGCGGGCGGTGGGGACGGCGCCCTCACCGCGAGTCACTTGTCAGCCCTTGTCTGAGGCGGAGGCAGCCCC GCGCCGCGCCGGACCCGAGCATATTTCATTTTCTGTCATTGGACTTTGAGCCATTAGAACCATGAGCAACTACAGTGTGTCACTGGTTGG CCCAGCTCCTTGGGGTTTCCGGCTGCAGGGCGGTAAGGATTTCAACATGCCTCTGACAATCTCTAGTGCTACATATCGAAATCGAATTGT GAGCCAAAATCTCAGCACAAGGGACAGAAAAGCAATACATACTCCCACCGAGGACCGTTTTAGGTATTCGGCAGCGGACCAGACAAGCCC CTACAAAAACAAGACCTGTCAACTCCCAAGTCTCTGTTTAAGTAATTTCCTGAAGGACAAGGAACTAGCAGAAGTTATCAAACATTCAAG AGGAACTTATGAAACCCTCACTTCAGACGTTACACAGAACTTACGGGCCACCGTTGGGCAGAGCTCTCTGAAGCCAACAGCTAAGACAGA AGGGCTCTCCACGTTCTTAGAGAAACCAAAGGACCAAGTTGCTACGGCCCGACAGCATTCGACCTTTACAGGCAGGTTTGGACAGCCACC CAGAGGGCCAATCTCTTTACACATGTACAGCAGGAAGAATGTGTTTCTCCACCACAATTTACACAGCACTGAGCTGCAAACTCTAGGCCA >In-frame_ENST00000538141_ENST00000333691_TCGA-NA-A4R0-01A_PDLIM5_chr4_95376535_+_CCSER1_chr4_92519723_length(amino acids)=194AA_start in transcript=151_stop in transcript=732 MSNYSVSLVGPAPWGFRLQGGKDFNMPLTISSATYRNRIVSQNLSTRDRKAIHTPTEDRFRYSAADQTSPYKNKTCQLPSLCLSNFLKDK ELAEVIKHSRGTYETLTSDVTQNLRATVGQSSLKPTAKTEGLSTFLEKPKDQVATARQHSTFTGRFGQPPRGPISLHMYSRKNVFLHHNL -------------------------------------------------------------- >In-frame_ENST00000380180_ENST00000509176_TCGA-NA-A4R0-01A_PDLIM5_chr4_95376535_+_CCSER1_chr4_92519723_length(transcript)=3589nt_BP=247nt AGCCAGGAGGCGGAAGTTCCCGCGGGCGGTGGGGACGGCGCCCTCACCGCGAGTCACTTGTCAGCCCTTGTCTGAGGCGGAGGCAGCCCC GCGCCGCGCCGGACCCGAGCATATTTCATTTTCTGTCATTGGACTTTGAGCCATTAGAACCATGAGCAACTACAGTGTGTCACTGGTTGG CCCAGCTCCTTGGGGTTTCCGGCTGCAGGGCGGTAAGGATTTCAACATGCCTCTGACAATCTCTAGTGCTACATATCGAAATCGAATTGT GAGCCAAAATCTCAGCACAAGGGACAGAAAAGCAATACATACTCCCACCGAGGACCGTTTTAGGTATTCGGCAGCGGACCAGACAAGCCC CTACAAAAACAAGACCTGTCAACTCCCAAGTCTCTGTTTAAGTAATTTCCTGAAGGACAAGGAACTAGCAGAAGTTATCAAACATTCAAG AGGAACTTATGAAACCCTCACTTCAGACGTTACACAGAACTTACGGGCCACCGTTGGGCAGAGCTCTCTGAAGCCAACAGCTAAGACAGA AGGGCTCTCCACGTTCTTAGAGAAACCAAAGGACCAAGTTGCTACGGCCCGACAGCATTCGACCTTTACAGGCAGGTTTGGACAGCCACC CAGAGGGCCAATCTCTTTACACATGTACAGCAGGAAGAATGTGTTTCTCCACCACAATTTACACAGCACTGAGCTGCAAACTCTAGGCCA GCAGGATGGGTAATTAAATCACCGTATTCCTGTCTTTGGGTAGGATAAAGATGGTTAGTGTTTCTCGTGCATAGTTCATATTAAAATTGT CATGTACTTTTTCTTACATTTTAGTTATAAACAGAGTTGTGTTGTTGGGTTTTTTTTCTTAGTCATAAACAAAGACTTGTGGGTTTTTTT TTTCCAAGAGTGAAAGTTTGAGCATGTTAATTGAACTAGGTTGCATTGCCTTGAAGACTTTACTATATAGGTGTATAATAAATGGGACCA TCATGATCGTTTATATAGTCCATAATTTATTTATTTTTTATCTCTATCACTTACTGATATGCATTAAGGTTTCAGAAGATAATATCAAAT AGCAATCTGTTCACTGTTAATGGTGTTACTATAAAAGTAGACCTGATGAAAAATAGATAAAGGAATTATAAAGAATTTTAAATTATATAA TTAATAGAAGGAGGAAAAAAGAGAAATGTTAACGTCTTATATTTGGTGGTATATTTATTTGAAGAATGTGGCTTGCTTGCATGTAACCTA GAGATGTGTTTGTCTCTATTACATACATTCAAGCTCATCTTGTGATACTAGTAAGGGGGAAATGGCTGTATTTTTTTTCCTTTAAACGTT TAGTTCATACTAGTTCACAAAGGATTTCAGACAGAGTAATTGCTAGCCAAATAGAGAATGACAGCTCTGATCTTTGAAAAATTTTGCTTT TAGTTTTTGTTATTGATGTTGAAGTACCGTGACATAACACAAGGTGATAAAGTTGGTTGAATTTTGTCAGATGATGCATAAATACTGACA TGCTATATTCTTTGAGCCACTGTCATGGCAATATAAACATTTTTTCAAAATTTCAAGGATGAAACATCCTAAGAAAATTATTCTTTTTCT TTACTTTCCTTATTTTTTAAAATGTTCTTTTTTATGTAAATCCAATTTTGGTTTATATACATCAACCCATATCTATAATTTTATGAACTG AAGAACAGAAAGTCAGTATTTTAGTAGCCAGCATACAATATTCTGACTATGCAGAAATCTAGATTTGGAACAAAAGTAAAGTAAATGTGA ACATTGGCAATTTAATCTTAGAAATAAGCTTCTAACAGGAATATTTAAAACCCATTTGATGGCAAATATTTCTCTTTGACAAATAAGGCC CAAATATGTTATAATATGTTATATACTTATGTGCACTTTAGATCAATATATGAATTGATCTATGGATAATTCCATCATGTTCAATTAGTA GCAGAGCAGAATCAAAGAGTACAATTGAATACATAAATAAATAATTTTTAAAAGACTAATAGGAATCAAGGCTGCAGTTTTCTTATACAC ATCAGAGCTGTTAAGTACATCCACATTAGCCATAGTCCATGCAAATTGAAACTGTCATACCTACTGCATGATCTGTTTCCCTTGCATTTT CTAACAGAATCTGTCAGCGTGCACAAGCAAGATGAACAAAGGGAAATTGAGATAGCAGTTTTAGCATGGCATCTGACAACTTGCTTAAAT TAAAGCTGTGTGCAAAATGCATCTCCTATTATAAAAATGTATTTGTGCCCTGTGCTTTGGGGAAAAGCCATTAGACACTCCACCCCTGAG CTTTAACTACTGAACTTTGATACATTTGCAAACTTAGATTGGAACTGATAAAGTAAGGAGTCGAGTGGATATGTTGTACTTGTAATTTTG GTTTTCCAAAGGAACACACATGTGCATCAAGGCAGACATTTGCCAAATGTTTTCTTTCTTTGCGTGTTTGTAATTCTGCCAAAAGAGAAC AATATACACTGCAAATTGCTTGACTTAATGAGATTGCCATCTAAAGTTCCCACCATACTTTGGAAGCTATAATGATCATGCAGATATACA CTTTGGGCTGGGCAATATTTAAGAAATGATAGGAAAATAGAAAAATCATGATTATTAATTGTGGAATTCAGCTTGATTTGTCCTAAATGT TGGTGTCTGTTGCTAGAGTATTTTAAATCTGTACATAAATAAGCATGATAAAATAATCAAGGATTTTTTCCCAGGATATGGAAGAACTAT GTATCACAAATAATGTTTTTGATTTGGACTTTTGGAGTTGATAGTTTTGTTTTCCTGGAAGATAGACTTTTGAATTATACTTTATAAAAA TAATCTATTTATAGAAGATCTGTCATTTAATAGACATTTTAAGAGATGTTTTAAACGCTAGTATTTTCTTGAAAAATCTTTTTTAAAGCT GAATCATTCAAAAGAAAACCTGGATTAAACAGTTCGATTTTAAAAGGAAGGGTATTTTTTGGAAATATCATCTTAAAGCTGTTTTGTATC AGTATTTTCAACATTGTTATAATATTATTTGTAATACTAAGTGTAACTCAGGCCTGGAGAAGGTGTAAGCCCACTATGCTAATGTACATC AGTAACTGTAAAACAGGGGTTCTTTGTAAGTTCCTCTTGTGTATATATAGTAACTTATAACAATGGCATGTGGGCATTCTTTCAGTGAAT TGCTTTCTTTGTACTAAAATCTCTAGTTTTCTAAGACAGTTCCATGTATAAAAATGATTTATGCATTTCTCCAAGGCGGTACATATCCAA AGACATGACACCAGGGGGAAAAAGTGCTTGTTTTTCTGATGGAAGCAGTGGTCTTTTCTTTTCTTTCCTCTTTCTTTTGTGCATGTGTAT GTGTAGCTAAGCCTAAATAACCCTGTAAAATTTCTGCTGCAAATTGTCTCTTCTGAATTTAGAATGTGTTTTAAAGGAACACTTAGGAAG >In-frame_ENST00000380180_ENST00000509176_TCGA-NA-A4R0-01A_PDLIM5_chr4_95376535_+_CCSER1_chr4_92519723_length(amino acids)=193AA_start in transcript=151_stop in transcript=732 MSNYSVSLVGPAPWGFRLQGGKDFNMPLTISSATYRNRIVSQNLSTRDRKAIHTPTEDRFRYSAADQTSPYKNKTCQLPSLCLSNFLKDK ELAEVIKHSRGTYETLTSDVTQNLRATVGQSSLKPTAKTEGLSTFLEKPKDQVATARQHSTFTGRFGQPPRGPISLHMYSRKNVFLHHNL -------------------------------------------------------------- >In-frame_ENST00000380180_ENST00000333691_TCGA-NA-A4R0-01A_PDLIM5_chr4_95376535_+_CCSER1_chr4_92519723_length(transcript)=733nt_BP=247nt AGCCAGGAGGCGGAAGTTCCCGCGGGCGGTGGGGACGGCGCCCTCACCGCGAGTCACTTGTCAGCCCTTGTCTGAGGCGGAGGCAGCCCC GCGCCGCGCCGGACCCGAGCATATTTCATTTTCTGTCATTGGACTTTGAGCCATTAGAACCATGAGCAACTACAGTGTGTCACTGGTTGG CCCAGCTCCTTGGGGTTTCCGGCTGCAGGGCGGTAAGGATTTCAACATGCCTCTGACAATCTCTAGTGCTACATATCGAAATCGAATTGT GAGCCAAAATCTCAGCACAAGGGACAGAAAAGCAATACATACTCCCACCGAGGACCGTTTTAGGTATTCGGCAGCGGACCAGACAAGCCC CTACAAAAACAAGACCTGTCAACTCCCAAGTCTCTGTTTAAGTAATTTCCTGAAGGACAAGGAACTAGCAGAAGTTATCAAACATTCAAG AGGAACTTATGAAACCCTCACTTCAGACGTTACACAGAACTTACGGGCCACCGTTGGGCAGAGCTCTCTGAAGCCAACAGCTAAGACAGA AGGGCTCTCCACGTTCTTAGAGAAACCAAAGGACCAAGTTGCTACGGCCCGACAGCATTCGACCTTTACAGGCAGGTTTGGACAGCCACC CAGAGGGCCAATCTCTTTACACATGTACAGCAGGAAGAATGTGTTTCTCCACCACAATTTACACAGCACTGAGCTGCAAACTCTAGGCCA >In-frame_ENST00000380180_ENST00000333691_TCGA-NA-A4R0-01A_PDLIM5_chr4_95376535_+_CCSER1_chr4_92519723_length(amino acids)=194AA_start in transcript=151_stop in transcript=732 MSNYSVSLVGPAPWGFRLQGGKDFNMPLTISSATYRNRIVSQNLSTRDRKAIHTPTEDRFRYSAADQTSPYKNKTCQLPSLCLSNFLKDK ELAEVIKHSRGTYETLTSDVTQNLRATVGQSSLKPTAKTEGLSTFLEKPKDQVATARQHSTFTGRFGQPPRGPISLHMYSRKNVFLHHNL -------------------------------------------------------------- >In-frame_ENST00000318007_ENST00000509176_TCGA-NA-A4R0-01A_PDLIM5_chr4_95376535_+_CCSER1_chr4_92519723_length(transcript)=3589nt_BP=247nt AGCCAGGAGGCGGAAGTTCCCGCGGGCGGTGGGGACGGCGCCCTCACCGCGAGTCACTTGTCAGCCCTTGTCTGAGGCGGAGGCAGCCCC GCGCCGCGCCGGACCCGAGCATATTTCATTTTCTGTCATTGGACTTTGAGCCATTAGAACCATGAGCAACTACAGTGTGTCACTGGTTGG CCCAGCTCCTTGGGGTTTCCGGCTGCAGGGCGGTAAGGATTTCAACATGCCTCTGACAATCTCTAGTGCTACATATCGAAATCGAATTGT GAGCCAAAATCTCAGCACAAGGGACAGAAAAGCAATACATACTCCCACCGAGGACCGTTTTAGGTATTCGGCAGCGGACCAGACAAGCCC CTACAAAAACAAGACCTGTCAACTCCCAAGTCTCTGTTTAAGTAATTTCCTGAAGGACAAGGAACTAGCAGAAGTTATCAAACATTCAAG AGGAACTTATGAAACCCTCACTTCAGACGTTACACAGAACTTACGGGCCACCGTTGGGCAGAGCTCTCTGAAGCCAACAGCTAAGACAGA AGGGCTCTCCACGTTCTTAGAGAAACCAAAGGACCAAGTTGCTACGGCCCGACAGCATTCGACCTTTACAGGCAGGTTTGGACAGCCACC CAGAGGGCCAATCTCTTTACACATGTACAGCAGGAAGAATGTGTTTCTCCACCACAATTTACACAGCACTGAGCTGCAAACTCTAGGCCA GCAGGATGGGTAATTAAATCACCGTATTCCTGTCTTTGGGTAGGATAAAGATGGTTAGTGTTTCTCGTGCATAGTTCATATTAAAATTGT CATGTACTTTTTCTTACATTTTAGTTATAAACAGAGTTGTGTTGTTGGGTTTTTTTTCTTAGTCATAAACAAAGACTTGTGGGTTTTTTT TTTCCAAGAGTGAAAGTTTGAGCATGTTAATTGAACTAGGTTGCATTGCCTTGAAGACTTTACTATATAGGTGTATAATAAATGGGACCA TCATGATCGTTTATATAGTCCATAATTTATTTATTTTTTATCTCTATCACTTACTGATATGCATTAAGGTTTCAGAAGATAATATCAAAT AGCAATCTGTTCACTGTTAATGGTGTTACTATAAAAGTAGACCTGATGAAAAATAGATAAAGGAATTATAAAGAATTTTAAATTATATAA TTAATAGAAGGAGGAAAAAAGAGAAATGTTAACGTCTTATATTTGGTGGTATATTTATTTGAAGAATGTGGCTTGCTTGCATGTAACCTA GAGATGTGTTTGTCTCTATTACATACATTCAAGCTCATCTTGTGATACTAGTAAGGGGGAAATGGCTGTATTTTTTTTCCTTTAAACGTT TAGTTCATACTAGTTCACAAAGGATTTCAGACAGAGTAATTGCTAGCCAAATAGAGAATGACAGCTCTGATCTTTGAAAAATTTTGCTTT TAGTTTTTGTTATTGATGTTGAAGTACCGTGACATAACACAAGGTGATAAAGTTGGTTGAATTTTGTCAGATGATGCATAAATACTGACA TGCTATATTCTTTGAGCCACTGTCATGGCAATATAAACATTTTTTCAAAATTTCAAGGATGAAACATCCTAAGAAAATTATTCTTTTTCT TTACTTTCCTTATTTTTTAAAATGTTCTTTTTTATGTAAATCCAATTTTGGTTTATATACATCAACCCATATCTATAATTTTATGAACTG AAGAACAGAAAGTCAGTATTTTAGTAGCCAGCATACAATATTCTGACTATGCAGAAATCTAGATTTGGAACAAAAGTAAAGTAAATGTGA ACATTGGCAATTTAATCTTAGAAATAAGCTTCTAACAGGAATATTTAAAACCCATTTGATGGCAAATATTTCTCTTTGACAAATAAGGCC CAAATATGTTATAATATGTTATATACTTATGTGCACTTTAGATCAATATATGAATTGATCTATGGATAATTCCATCATGTTCAATTAGTA GCAGAGCAGAATCAAAGAGTACAATTGAATACATAAATAAATAATTTTTAAAAGACTAATAGGAATCAAGGCTGCAGTTTTCTTATACAC ATCAGAGCTGTTAAGTACATCCACATTAGCCATAGTCCATGCAAATTGAAACTGTCATACCTACTGCATGATCTGTTTCCCTTGCATTTT CTAACAGAATCTGTCAGCGTGCACAAGCAAGATGAACAAAGGGAAATTGAGATAGCAGTTTTAGCATGGCATCTGACAACTTGCTTAAAT TAAAGCTGTGTGCAAAATGCATCTCCTATTATAAAAATGTATTTGTGCCCTGTGCTTTGGGGAAAAGCCATTAGACACTCCACCCCTGAG CTTTAACTACTGAACTTTGATACATTTGCAAACTTAGATTGGAACTGATAAAGTAAGGAGTCGAGTGGATATGTTGTACTTGTAATTTTG GTTTTCCAAAGGAACACACATGTGCATCAAGGCAGACATTTGCCAAATGTTTTCTTTCTTTGCGTGTTTGTAATTCTGCCAAAAGAGAAC AATATACACTGCAAATTGCTTGACTTAATGAGATTGCCATCTAAAGTTCCCACCATACTTTGGAAGCTATAATGATCATGCAGATATACA CTTTGGGCTGGGCAATATTTAAGAAATGATAGGAAAATAGAAAAATCATGATTATTAATTGTGGAATTCAGCTTGATTTGTCCTAAATGT TGGTGTCTGTTGCTAGAGTATTTTAAATCTGTACATAAATAAGCATGATAAAATAATCAAGGATTTTTTCCCAGGATATGGAAGAACTAT GTATCACAAATAATGTTTTTGATTTGGACTTTTGGAGTTGATAGTTTTGTTTTCCTGGAAGATAGACTTTTGAATTATACTTTATAAAAA TAATCTATTTATAGAAGATCTGTCATTTAATAGACATTTTAAGAGATGTTTTAAACGCTAGTATTTTCTTGAAAAATCTTTTTTAAAGCT GAATCATTCAAAAGAAAACCTGGATTAAACAGTTCGATTTTAAAAGGAAGGGTATTTTTTGGAAATATCATCTTAAAGCTGTTTTGTATC AGTATTTTCAACATTGTTATAATATTATTTGTAATACTAAGTGTAACTCAGGCCTGGAGAAGGTGTAAGCCCACTATGCTAATGTACATC AGTAACTGTAAAACAGGGGTTCTTTGTAAGTTCCTCTTGTGTATATATAGTAACTTATAACAATGGCATGTGGGCATTCTTTCAGTGAAT TGCTTTCTTTGTACTAAAATCTCTAGTTTTCTAAGACAGTTCCATGTATAAAAATGATTTATGCATTTCTCCAAGGCGGTACATATCCAA AGACATGACACCAGGGGGAAAAAGTGCTTGTTTTTCTGATGGAAGCAGTGGTCTTTTCTTTTCTTTCCTCTTTCTTTTGTGCATGTGTAT GTGTAGCTAAGCCTAAATAACCCTGTAAAATTTCTGCTGCAAATTGTCTCTTCTGAATTTAGAATGTGTTTTAAAGGAACACTTAGGAAG >In-frame_ENST00000318007_ENST00000509176_TCGA-NA-A4R0-01A_PDLIM5_chr4_95376535_+_CCSER1_chr4_92519723_length(amino acids)=193AA_start in transcript=151_stop in transcript=732 MSNYSVSLVGPAPWGFRLQGGKDFNMPLTISSATYRNRIVSQNLSTRDRKAIHTPTEDRFRYSAADQTSPYKNKTCQLPSLCLSNFLKDK ELAEVIKHSRGTYETLTSDVTQNLRATVGQSSLKPTAKTEGLSTFLEKPKDQVATARQHSTFTGRFGQPPRGPISLHMYSRKNVFLHHNL -------------------------------------------------------------- >In-frame_ENST00000318007_ENST00000333691_TCGA-NA-A4R0-01A_PDLIM5_chr4_95376535_+_CCSER1_chr4_92519723_length(transcript)=733nt_BP=247nt AGCCAGGAGGCGGAAGTTCCCGCGGGCGGTGGGGACGGCGCCCTCACCGCGAGTCACTTGTCAGCCCTTGTCTGAGGCGGAGGCAGCCCC GCGCCGCGCCGGACCCGAGCATATTTCATTTTCTGTCATTGGACTTTGAGCCATTAGAACCATGAGCAACTACAGTGTGTCACTGGTTGG CCCAGCTCCTTGGGGTTTCCGGCTGCAGGGCGGTAAGGATTTCAACATGCCTCTGACAATCTCTAGTGCTACATATCGAAATCGAATTGT GAGCCAAAATCTCAGCACAAGGGACAGAAAAGCAATACATACTCCCACCGAGGACCGTTTTAGGTATTCGGCAGCGGACCAGACAAGCCC CTACAAAAACAAGACCTGTCAACTCCCAAGTCTCTGTTTAAGTAATTTCCTGAAGGACAAGGAACTAGCAGAAGTTATCAAACATTCAAG AGGAACTTATGAAACCCTCACTTCAGACGTTACACAGAACTTACGGGCCACCGTTGGGCAGAGCTCTCTGAAGCCAACAGCTAAGACAGA AGGGCTCTCCACGTTCTTAGAGAAACCAAAGGACCAAGTTGCTACGGCCCGACAGCATTCGACCTTTACAGGCAGGTTTGGACAGCCACC CAGAGGGCCAATCTCTTTACACATGTACAGCAGGAAGAATGTGTTTCTCCACCACAATTTACACAGCACTGAGCTGCAAACTCTAGGCCA >In-frame_ENST00000318007_ENST00000333691_TCGA-NA-A4R0-01A_PDLIM5_chr4_95376535_+_CCSER1_chr4_92519723_length(amino acids)=194AA_start in transcript=151_stop in transcript=732 MSNYSVSLVGPAPWGFRLQGGKDFNMPLTISSATYRNRIVSQNLSTRDRKAIHTPTEDRFRYSAADQTSPYKNKTCQLPSLCLSNFLKDK ELAEVIKHSRGTYETLTSDVTQNLRATVGQSSLKPTAKTEGLSTFLEKPKDQVATARQHSTFTGRFGQPPRGPISLHMYSRKNVFLHHNL -------------------------------------------------------------- >In-frame_ENST00000437932_ENST00000509176_TCGA-NA-A4R0-01A_PDLIM5_chr4_95376535_+_CCSER1_chr4_92519723_length(transcript)=3589nt_BP=247nt AGCCAGGAGGCGGAAGTTCCCGCGGGCGGTGGGGACGGCGCCCTCACCGCGAGTCACTTGTCAGCCCTTGTCTGAGGCGGAGGCAGCCCC GCGCCGCGCCGGACCCGAGCATATTTCATTTTCTGTCATTGGACTTTGAGCCATTAGAACCATGAGCAACTACAGTGTGTCACTGGTTGG CCCAGCTCCTTGGGGTTTCCGGCTGCAGGGCGGTAAGGATTTCAACATGCCTCTGACAATCTCTAGTGCTACATATCGAAATCGAATTGT GAGCCAAAATCTCAGCACAAGGGACAGAAAAGCAATACATACTCCCACCGAGGACCGTTTTAGGTATTCGGCAGCGGACCAGACAAGCCC CTACAAAAACAAGACCTGTCAACTCCCAAGTCTCTGTTTAAGTAATTTCCTGAAGGACAAGGAACTAGCAGAAGTTATCAAACATTCAAG AGGAACTTATGAAACCCTCACTTCAGACGTTACACAGAACTTACGGGCCACCGTTGGGCAGAGCTCTCTGAAGCCAACAGCTAAGACAGA AGGGCTCTCCACGTTCTTAGAGAAACCAAAGGACCAAGTTGCTACGGCCCGACAGCATTCGACCTTTACAGGCAGGTTTGGACAGCCACC CAGAGGGCCAATCTCTTTACACATGTACAGCAGGAAGAATGTGTTTCTCCACCACAATTTACACAGCACTGAGCTGCAAACTCTAGGCCA GCAGGATGGGTAATTAAATCACCGTATTCCTGTCTTTGGGTAGGATAAAGATGGTTAGTGTTTCTCGTGCATAGTTCATATTAAAATTGT CATGTACTTTTTCTTACATTTTAGTTATAAACAGAGTTGTGTTGTTGGGTTTTTTTTCTTAGTCATAAACAAAGACTTGTGGGTTTTTTT TTTCCAAGAGTGAAAGTTTGAGCATGTTAATTGAACTAGGTTGCATTGCCTTGAAGACTTTACTATATAGGTGTATAATAAATGGGACCA TCATGATCGTTTATATAGTCCATAATTTATTTATTTTTTATCTCTATCACTTACTGATATGCATTAAGGTTTCAGAAGATAATATCAAAT AGCAATCTGTTCACTGTTAATGGTGTTACTATAAAAGTAGACCTGATGAAAAATAGATAAAGGAATTATAAAGAATTTTAAATTATATAA TTAATAGAAGGAGGAAAAAAGAGAAATGTTAACGTCTTATATTTGGTGGTATATTTATTTGAAGAATGTGGCTTGCTTGCATGTAACCTA GAGATGTGTTTGTCTCTATTACATACATTCAAGCTCATCTTGTGATACTAGTAAGGGGGAAATGGCTGTATTTTTTTTCCTTTAAACGTT TAGTTCATACTAGTTCACAAAGGATTTCAGACAGAGTAATTGCTAGCCAAATAGAGAATGACAGCTCTGATCTTTGAAAAATTTTGCTTT TAGTTTTTGTTATTGATGTTGAAGTACCGTGACATAACACAAGGTGATAAAGTTGGTTGAATTTTGTCAGATGATGCATAAATACTGACA TGCTATATTCTTTGAGCCACTGTCATGGCAATATAAACATTTTTTCAAAATTTCAAGGATGAAACATCCTAAGAAAATTATTCTTTTTCT TTACTTTCCTTATTTTTTAAAATGTTCTTTTTTATGTAAATCCAATTTTGGTTTATATACATCAACCCATATCTATAATTTTATGAACTG AAGAACAGAAAGTCAGTATTTTAGTAGCCAGCATACAATATTCTGACTATGCAGAAATCTAGATTTGGAACAAAAGTAAAGTAAATGTGA ACATTGGCAATTTAATCTTAGAAATAAGCTTCTAACAGGAATATTTAAAACCCATTTGATGGCAAATATTTCTCTTTGACAAATAAGGCC CAAATATGTTATAATATGTTATATACTTATGTGCACTTTAGATCAATATATGAATTGATCTATGGATAATTCCATCATGTTCAATTAGTA GCAGAGCAGAATCAAAGAGTACAATTGAATACATAAATAAATAATTTTTAAAAGACTAATAGGAATCAAGGCTGCAGTTTTCTTATACAC ATCAGAGCTGTTAAGTACATCCACATTAGCCATAGTCCATGCAAATTGAAACTGTCATACCTACTGCATGATCTGTTTCCCTTGCATTTT CTAACAGAATCTGTCAGCGTGCACAAGCAAGATGAACAAAGGGAAATTGAGATAGCAGTTTTAGCATGGCATCTGACAACTTGCTTAAAT TAAAGCTGTGTGCAAAATGCATCTCCTATTATAAAAATGTATTTGTGCCCTGTGCTTTGGGGAAAAGCCATTAGACACTCCACCCCTGAG CTTTAACTACTGAACTTTGATACATTTGCAAACTTAGATTGGAACTGATAAAGTAAGGAGTCGAGTGGATATGTTGTACTTGTAATTTTG GTTTTCCAAAGGAACACACATGTGCATCAAGGCAGACATTTGCCAAATGTTTTCTTTCTTTGCGTGTTTGTAATTCTGCCAAAAGAGAAC AATATACACTGCAAATTGCTTGACTTAATGAGATTGCCATCTAAAGTTCCCACCATACTTTGGAAGCTATAATGATCATGCAGATATACA CTTTGGGCTGGGCAATATTTAAGAAATGATAGGAAAATAGAAAAATCATGATTATTAATTGTGGAATTCAGCTTGATTTGTCCTAAATGT TGGTGTCTGTTGCTAGAGTATTTTAAATCTGTACATAAATAAGCATGATAAAATAATCAAGGATTTTTTCCCAGGATATGGAAGAACTAT GTATCACAAATAATGTTTTTGATTTGGACTTTTGGAGTTGATAGTTTTGTTTTCCTGGAAGATAGACTTTTGAATTATACTTTATAAAAA TAATCTATTTATAGAAGATCTGTCATTTAATAGACATTTTAAGAGATGTTTTAAACGCTAGTATTTTCTTGAAAAATCTTTTTTAAAGCT GAATCATTCAAAAGAAAACCTGGATTAAACAGTTCGATTTTAAAAGGAAGGGTATTTTTTGGAAATATCATCTTAAAGCTGTTTTGTATC AGTATTTTCAACATTGTTATAATATTATTTGTAATACTAAGTGTAACTCAGGCCTGGAGAAGGTGTAAGCCCACTATGCTAATGTACATC AGTAACTGTAAAACAGGGGTTCTTTGTAAGTTCCTCTTGTGTATATATAGTAACTTATAACAATGGCATGTGGGCATTCTTTCAGTGAAT TGCTTTCTTTGTACTAAAATCTCTAGTTTTCTAAGACAGTTCCATGTATAAAAATGATTTATGCATTTCTCCAAGGCGGTACATATCCAA AGACATGACACCAGGGGGAAAAAGTGCTTGTTTTTCTGATGGAAGCAGTGGTCTTTTCTTTTCTTTCCTCTTTCTTTTGTGCATGTGTAT GTGTAGCTAAGCCTAAATAACCCTGTAAAATTTCTGCTGCAAATTGTCTCTTCTGAATTTAGAATGTGTTTTAAAGGAACACTTAGGAAG >In-frame_ENST00000437932_ENST00000509176_TCGA-NA-A4R0-01A_PDLIM5_chr4_95376535_+_CCSER1_chr4_92519723_length(amino acids)=193AA_start in transcript=151_stop in transcript=732 MSNYSVSLVGPAPWGFRLQGGKDFNMPLTISSATYRNRIVSQNLSTRDRKAIHTPTEDRFRYSAADQTSPYKNKTCQLPSLCLSNFLKDK ELAEVIKHSRGTYETLTSDVTQNLRATVGQSSLKPTAKTEGLSTFLEKPKDQVATARQHSTFTGRFGQPPRGPISLHMYSRKNVFLHHNL -------------------------------------------------------------- >In-frame_ENST00000437932_ENST00000333691_TCGA-NA-A4R0-01A_PDLIM5_chr4_95376535_+_CCSER1_chr4_92519723_length(transcript)=733nt_BP=247nt AGCCAGGAGGCGGAAGTTCCCGCGGGCGGTGGGGACGGCGCCCTCACCGCGAGTCACTTGTCAGCCCTTGTCTGAGGCGGAGGCAGCCCC GCGCCGCGCCGGACCCGAGCATATTTCATTTTCTGTCATTGGACTTTGAGCCATTAGAACCATGAGCAACTACAGTGTGTCACTGGTTGG CCCAGCTCCTTGGGGTTTCCGGCTGCAGGGCGGTAAGGATTTCAACATGCCTCTGACAATCTCTAGTGCTACATATCGAAATCGAATTGT GAGCCAAAATCTCAGCACAAGGGACAGAAAAGCAATACATACTCCCACCGAGGACCGTTTTAGGTATTCGGCAGCGGACCAGACAAGCCC CTACAAAAACAAGACCTGTCAACTCCCAAGTCTCTGTTTAAGTAATTTCCTGAAGGACAAGGAACTAGCAGAAGTTATCAAACATTCAAG AGGAACTTATGAAACCCTCACTTCAGACGTTACACAGAACTTACGGGCCACCGTTGGGCAGAGCTCTCTGAAGCCAACAGCTAAGACAGA AGGGCTCTCCACGTTCTTAGAGAAACCAAAGGACCAAGTTGCTACGGCCCGACAGCATTCGACCTTTACAGGCAGGTTTGGACAGCCACC CAGAGGGCCAATCTCTTTACACATGTACAGCAGGAAGAATGTGTTTCTCCACCACAATTTACACAGCACTGAGCTGCAAACTCTAGGCCA >In-frame_ENST00000437932_ENST00000333691_TCGA-NA-A4R0-01A_PDLIM5_chr4_95376535_+_CCSER1_chr4_92519723_length(amino acids)=194AA_start in transcript=151_stop in transcript=732 MSNYSVSLVGPAPWGFRLQGGKDFNMPLTISSATYRNRIVSQNLSTRDRKAIHTPTEDRFRYSAADQTSPYKNKTCQLPSLCLSNFLKDK ELAEVIKHSRGTYETLTSDVTQNLRATVGQSSLKPTAKTEGLSTFLEKPKDQVATARQHSTFTGRFGQPPRGPISLHMYSRKNVFLHHNL -------------------------------------------------------------- >In-frame_ENST00000317968_ENST00000509176_TCGA-NA-A4R0-01A_PDLIM5_chr4_95376535_+_CCSER1_chr4_92519723_length(transcript)=3574nt_BP=232nt GTTCCCGCGGGCGGTGGGGACGGCGCCCTCACCGCGAGTCACTTGTCAGCCCTTGTCTGAGGCGGAGGCAGCCCCGCGCCGCGCCGGACC CGAGCATATTTCATTTTCTGTCATTGGACTTTGAGCCATTAGAACCATGAGCAACTACAGTGTGTCACTGGTTGGCCCAGCTCCTTGGGG TTTCCGGCTGCAGGGCGGTAAGGATTTCAACATGCCTCTGACAATCTCTAGTGCTACATATCGAAATCGAATTGTGAGCCAAAATCTCAG CACAAGGGACAGAAAAGCAATACATACTCCCACCGAGGACCGTTTTAGGTATTCGGCAGCGGACCAGACAAGCCCCTACAAAAACAAGAC CTGTCAACTCCCAAGTCTCTGTTTAAGTAATTTCCTGAAGGACAAGGAACTAGCAGAAGTTATCAAACATTCAAGAGGAACTTATGAAAC CCTCACTTCAGACGTTACACAGAACTTACGGGCCACCGTTGGGCAGAGCTCTCTGAAGCCAACAGCTAAGACAGAAGGGCTCTCCACGTT CTTAGAGAAACCAAAGGACCAAGTTGCTACGGCCCGACAGCATTCGACCTTTACAGGCAGGTTTGGACAGCCACCCAGAGGGCCAATCTC TTTACACATGTACAGCAGGAAGAATGTGTTTCTCCACCACAATTTACACAGCACTGAGCTGCAAACTCTAGGCCAGCAGGATGGGTAATT AAATCACCGTATTCCTGTCTTTGGGTAGGATAAAGATGGTTAGTGTTTCTCGTGCATAGTTCATATTAAAATTGTCATGTACTTTTTCTT ACATTTTAGTTATAAACAGAGTTGTGTTGTTGGGTTTTTTTTCTTAGTCATAAACAAAGACTTGTGGGTTTTTTTTTTCCAAGAGTGAAA GTTTGAGCATGTTAATTGAACTAGGTTGCATTGCCTTGAAGACTTTACTATATAGGTGTATAATAAATGGGACCATCATGATCGTTTATA TAGTCCATAATTTATTTATTTTTTATCTCTATCACTTACTGATATGCATTAAGGTTTCAGAAGATAATATCAAATAGCAATCTGTTCACT GTTAATGGTGTTACTATAAAAGTAGACCTGATGAAAAATAGATAAAGGAATTATAAAGAATTTTAAATTATATAATTAATAGAAGGAGGA AAAAAGAGAAATGTTAACGTCTTATATTTGGTGGTATATTTATTTGAAGAATGTGGCTTGCTTGCATGTAACCTAGAGATGTGTTTGTCT CTATTACATACATTCAAGCTCATCTTGTGATACTAGTAAGGGGGAAATGGCTGTATTTTTTTTCCTTTAAACGTTTAGTTCATACTAGTT CACAAAGGATTTCAGACAGAGTAATTGCTAGCCAAATAGAGAATGACAGCTCTGATCTTTGAAAAATTTTGCTTTTAGTTTTTGTTATTG ATGTTGAAGTACCGTGACATAACACAAGGTGATAAAGTTGGTTGAATTTTGTCAGATGATGCATAAATACTGACATGCTATATTCTTTGA GCCACTGTCATGGCAATATAAACATTTTTTCAAAATTTCAAGGATGAAACATCCTAAGAAAATTATTCTTTTTCTTTACTTTCCTTATTT TTTAAAATGTTCTTTTTTATGTAAATCCAATTTTGGTTTATATACATCAACCCATATCTATAATTTTATGAACTGAAGAACAGAAAGTCA GTATTTTAGTAGCCAGCATACAATATTCTGACTATGCAGAAATCTAGATTTGGAACAAAAGTAAAGTAAATGTGAACATTGGCAATTTAA TCTTAGAAATAAGCTTCTAACAGGAATATTTAAAACCCATTTGATGGCAAATATTTCTCTTTGACAAATAAGGCCCAAATATGTTATAAT ATGTTATATACTTATGTGCACTTTAGATCAATATATGAATTGATCTATGGATAATTCCATCATGTTCAATTAGTAGCAGAGCAGAATCAA AGAGTACAATTGAATACATAAATAAATAATTTTTAAAAGACTAATAGGAATCAAGGCTGCAGTTTTCTTATACACATCAGAGCTGTTAAG TACATCCACATTAGCCATAGTCCATGCAAATTGAAACTGTCATACCTACTGCATGATCTGTTTCCCTTGCATTTTCTAACAGAATCTGTC AGCGTGCACAAGCAAGATGAACAAAGGGAAATTGAGATAGCAGTTTTAGCATGGCATCTGACAACTTGCTTAAATTAAAGCTGTGTGCAA AATGCATCTCCTATTATAAAAATGTATTTGTGCCCTGTGCTTTGGGGAAAAGCCATTAGACACTCCACCCCTGAGCTTTAACTACTGAAC TTTGATACATTTGCAAACTTAGATTGGAACTGATAAAGTAAGGAGTCGAGTGGATATGTTGTACTTGTAATTTTGGTTTTCCAAAGGAAC ACACATGTGCATCAAGGCAGACATTTGCCAAATGTTTTCTTTCTTTGCGTGTTTGTAATTCTGCCAAAAGAGAACAATATACACTGCAAA TTGCTTGACTTAATGAGATTGCCATCTAAAGTTCCCACCATACTTTGGAAGCTATAATGATCATGCAGATATACACTTTGGGCTGGGCAA TATTTAAGAAATGATAGGAAAATAGAAAAATCATGATTATTAATTGTGGAATTCAGCTTGATTTGTCCTAAATGTTGGTGTCTGTTGCTA GAGTATTTTAAATCTGTACATAAATAAGCATGATAAAATAATCAAGGATTTTTTCCCAGGATATGGAAGAACTATGTATCACAAATAATG TTTTTGATTTGGACTTTTGGAGTTGATAGTTTTGTTTTCCTGGAAGATAGACTTTTGAATTATACTTTATAAAAATAATCTATTTATAGA AGATCTGTCATTTAATAGACATTTTAAGAGATGTTTTAAACGCTAGTATTTTCTTGAAAAATCTTTTTTAAAGCTGAATCATTCAAAAGA AAACCTGGATTAAACAGTTCGATTTTAAAAGGAAGGGTATTTTTTGGAAATATCATCTTAAAGCTGTTTTGTATCAGTATTTTCAACATT GTTATAATATTATTTGTAATACTAAGTGTAACTCAGGCCTGGAGAAGGTGTAAGCCCACTATGCTAATGTACATCAGTAACTGTAAAACA GGGGTTCTTTGTAAGTTCCTCTTGTGTATATATAGTAACTTATAACAATGGCATGTGGGCATTCTTTCAGTGAATTGCTTTCTTTGTACT AAAATCTCTAGTTTTCTAAGACAGTTCCATGTATAAAAATGATTTATGCATTTCTCCAAGGCGGTACATATCCAAAGACATGACACCAGG GGGAAAAAGTGCTTGTTTTTCTGATGGAAGCAGTGGTCTTTTCTTTTCTTTCCTCTTTCTTTTGTGCATGTGTATGTGTAGCTAAGCCTA AATAACCCTGTAAAATTTCTGCTGCAAATTGTCTCTTCTGAATTTAGAATGTGTTTTAAAGGAACACTTAGGAAGAGAAATACCTTGAAG >In-frame_ENST00000317968_ENST00000509176_TCGA-NA-A4R0-01A_PDLIM5_chr4_95376535_+_CCSER1_chr4_92519723_length(amino acids)=193AA_start in transcript=136_stop in transcript=717 MSNYSVSLVGPAPWGFRLQGGKDFNMPLTISSATYRNRIVSQNLSTRDRKAIHTPTEDRFRYSAADQTSPYKNKTCQLPSLCLSNFLKDK ELAEVIKHSRGTYETLTSDVTQNLRATVGQSSLKPTAKTEGLSTFLEKPKDQVATARQHSTFTGRFGQPPRGPISLHMYSRKNVFLHHNL -------------------------------------------------------------- >In-frame_ENST00000317968_ENST00000333691_TCGA-NA-A4R0-01A_PDLIM5_chr4_95376535_+_CCSER1_chr4_92519723_length(transcript)=718nt_BP=232nt GTTCCCGCGGGCGGTGGGGACGGCGCCCTCACCGCGAGTCACTTGTCAGCCCTTGTCTGAGGCGGAGGCAGCCCCGCGCCGCGCCGGACC CGAGCATATTTCATTTTCTGTCATTGGACTTTGAGCCATTAGAACCATGAGCAACTACAGTGTGTCACTGGTTGGCCCAGCTCCTTGGGG TTTCCGGCTGCAGGGCGGTAAGGATTTCAACATGCCTCTGACAATCTCTAGTGCTACATATCGAAATCGAATTGTGAGCCAAAATCTCAG CACAAGGGACAGAAAAGCAATACATACTCCCACCGAGGACCGTTTTAGGTATTCGGCAGCGGACCAGACAAGCCCCTACAAAAACAAGAC CTGTCAACTCCCAAGTCTCTGTTTAAGTAATTTCCTGAAGGACAAGGAACTAGCAGAAGTTATCAAACATTCAAGAGGAACTTATGAAAC CCTCACTTCAGACGTTACACAGAACTTACGGGCCACCGTTGGGCAGAGCTCTCTGAAGCCAACAGCTAAGACAGAAGGGCTCTCCACGTT CTTAGAGAAACCAAAGGACCAAGTTGCTACGGCCCGACAGCATTCGACCTTTACAGGCAGGTTTGGACAGCCACCCAGAGGGCCAATCTC >In-frame_ENST00000317968_ENST00000333691_TCGA-NA-A4R0-01A_PDLIM5_chr4_95376535_+_CCSER1_chr4_92519723_length(amino acids)=194AA_start in transcript=136_stop in transcript=717 MSNYSVSLVGPAPWGFRLQGGKDFNMPLTISSATYRNRIVSQNLSTRDRKAIHTPTEDRFRYSAADQTSPYKNKTCQLPSLCLSNFLKDK ELAEVIKHSRGTYETLTSDVTQNLRATVGQSSLKPTAKTEGLSTFLEKPKDQVATARQHSTFTGRFGQPPRGPISLHMYSRKNVFLHHNL -------------------------------------------------------------- >In-frame_ENST00000508216_ENST00000509176_TCGA-NA-A4R0-01A_PDLIM5_chr4_95376535_+_CCSER1_chr4_92519723_length(transcript)=3482nt_BP=140nt AGCATATTTCATTTTCTGTCATTGGACTTTGAGCCATTAGAACCATGAGCAACTACAGTGTGTCACTGGTTGGCCCAGCTCCTTGGGGTT TCCGGCTGCAGGGCGGTAAGGATTTCAACATGCCTCTGACAATCTCTAGTGCTACATATCGAAATCGAATTGTGAGCCAAAATCTCAGCA CAAGGGACAGAAAAGCAATACATACTCCCACCGAGGACCGTTTTAGGTATTCGGCAGCGGACCAGACAAGCCCCTACAAAAACAAGACCT GTCAACTCCCAAGTCTCTGTTTAAGTAATTTCCTGAAGGACAAGGAACTAGCAGAAGTTATCAAACATTCAAGAGGAACTTATGAAACCC TCACTTCAGACGTTACACAGAACTTACGGGCCACCGTTGGGCAGAGCTCTCTGAAGCCAACAGCTAAGACAGAAGGGCTCTCCACGTTCT TAGAGAAACCAAAGGACCAAGTTGCTACGGCCCGACAGCATTCGACCTTTACAGGCAGGTTTGGACAGCCACCCAGAGGGCCAATCTCTT TACACATGTACAGCAGGAAGAATGTGTTTCTCCACCACAATTTACACAGCACTGAGCTGCAAACTCTAGGCCAGCAGGATGGGTAATTAA ATCACCGTATTCCTGTCTTTGGGTAGGATAAAGATGGTTAGTGTTTCTCGTGCATAGTTCATATTAAAATTGTCATGTACTTTTTCTTAC ATTTTAGTTATAAACAGAGTTGTGTTGTTGGGTTTTTTTTCTTAGTCATAAACAAAGACTTGTGGGTTTTTTTTTTCCAAGAGTGAAAGT TTGAGCATGTTAATTGAACTAGGTTGCATTGCCTTGAAGACTTTACTATATAGGTGTATAATAAATGGGACCATCATGATCGTTTATATA GTCCATAATTTATTTATTTTTTATCTCTATCACTTACTGATATGCATTAAGGTTTCAGAAGATAATATCAAATAGCAATCTGTTCACTGT TAATGGTGTTACTATAAAAGTAGACCTGATGAAAAATAGATAAAGGAATTATAAAGAATTTTAAATTATATAATTAATAGAAGGAGGAAA AAAGAGAAATGTTAACGTCTTATATTTGGTGGTATATTTATTTGAAGAATGTGGCTTGCTTGCATGTAACCTAGAGATGTGTTTGTCTCT ATTACATACATTCAAGCTCATCTTGTGATACTAGTAAGGGGGAAATGGCTGTATTTTTTTTCCTTTAAACGTTTAGTTCATACTAGTTCA CAAAGGATTTCAGACAGAGTAATTGCTAGCCAAATAGAGAATGACAGCTCTGATCTTTGAAAAATTTTGCTTTTAGTTTTTGTTATTGAT GTTGAAGTACCGTGACATAACACAAGGTGATAAAGTTGGTTGAATTTTGTCAGATGATGCATAAATACTGACATGCTATATTCTTTGAGC CACTGTCATGGCAATATAAACATTTTTTCAAAATTTCAAGGATGAAACATCCTAAGAAAATTATTCTTTTTCTTTACTTTCCTTATTTTT TAAAATGTTCTTTTTTATGTAAATCCAATTTTGGTTTATATACATCAACCCATATCTATAATTTTATGAACTGAAGAACAGAAAGTCAGT ATTTTAGTAGCCAGCATACAATATTCTGACTATGCAGAAATCTAGATTTGGAACAAAAGTAAAGTAAATGTGAACATTGGCAATTTAATC TTAGAAATAAGCTTCTAACAGGAATATTTAAAACCCATTTGATGGCAAATATTTCTCTTTGACAAATAAGGCCCAAATATGTTATAATAT GTTATATACTTATGTGCACTTTAGATCAATATATGAATTGATCTATGGATAATTCCATCATGTTCAATTAGTAGCAGAGCAGAATCAAAG AGTACAATTGAATACATAAATAAATAATTTTTAAAAGACTAATAGGAATCAAGGCTGCAGTTTTCTTATACACATCAGAGCTGTTAAGTA CATCCACATTAGCCATAGTCCATGCAAATTGAAACTGTCATACCTACTGCATGATCTGTTTCCCTTGCATTTTCTAACAGAATCTGTCAG CGTGCACAAGCAAGATGAACAAAGGGAAATTGAGATAGCAGTTTTAGCATGGCATCTGACAACTTGCTTAAATTAAAGCTGTGTGCAAAA TGCATCTCCTATTATAAAAATGTATTTGTGCCCTGTGCTTTGGGGAAAAGCCATTAGACACTCCACCCCTGAGCTTTAACTACTGAACTT TGATACATTTGCAAACTTAGATTGGAACTGATAAAGTAAGGAGTCGAGTGGATATGTTGTACTTGTAATTTTGGTTTTCCAAAGGAACAC ACATGTGCATCAAGGCAGACATTTGCCAAATGTTTTCTTTCTTTGCGTGTTTGTAATTCTGCCAAAAGAGAACAATATACACTGCAAATT GCTTGACTTAATGAGATTGCCATCTAAAGTTCCCACCATACTTTGGAAGCTATAATGATCATGCAGATATACACTTTGGGCTGGGCAATA TTTAAGAAATGATAGGAAAATAGAAAAATCATGATTATTAATTGTGGAATTCAGCTTGATTTGTCCTAAATGTTGGTGTCTGTTGCTAGA GTATTTTAAATCTGTACATAAATAAGCATGATAAAATAATCAAGGATTTTTTCCCAGGATATGGAAGAACTATGTATCACAAATAATGTT TTTGATTTGGACTTTTGGAGTTGATAGTTTTGTTTTCCTGGAAGATAGACTTTTGAATTATACTTTATAAAAATAATCTATTTATAGAAG ATCTGTCATTTAATAGACATTTTAAGAGATGTTTTAAACGCTAGTATTTTCTTGAAAAATCTTTTTTAAAGCTGAATCATTCAAAAGAAA ACCTGGATTAAACAGTTCGATTTTAAAAGGAAGGGTATTTTTTGGAAATATCATCTTAAAGCTGTTTTGTATCAGTATTTTCAACATTGT TATAATATTATTTGTAATACTAAGTGTAACTCAGGCCTGGAGAAGGTGTAAGCCCACTATGCTAATGTACATCAGTAACTGTAAAACAGG GGTTCTTTGTAAGTTCCTCTTGTGTATATATAGTAACTTATAACAATGGCATGTGGGCATTCTTTCAGTGAATTGCTTTCTTTGTACTAA AATCTCTAGTTTTCTAAGACAGTTCCATGTATAAAAATGATTTATGCATTTCTCCAAGGCGGTACATATCCAAAGACATGACACCAGGGG GAAAAAGTGCTTGTTTTTCTGATGGAAGCAGTGGTCTTTTCTTTTCTTTCCTCTTTCTTTTGTGCATGTGTATGTGTAGCTAAGCCTAAA TAACCCTGTAAAATTTCTGCTGCAAATTGTCTCTTCTGAATTTAGAATGTGTTTTAAAGGAACACTTAGGAAGAGAAATACCTTGAAGAA >In-frame_ENST00000508216_ENST00000509176_TCGA-NA-A4R0-01A_PDLIM5_chr4_95376535_+_CCSER1_chr4_92519723_length(amino acids)=193AA_start in transcript=44_stop in transcript=625 MSNYSVSLVGPAPWGFRLQGGKDFNMPLTISSATYRNRIVSQNLSTRDRKAIHTPTEDRFRYSAADQTSPYKNKTCQLPSLCLSNFLKDK ELAEVIKHSRGTYETLTSDVTQNLRATVGQSSLKPTAKTEGLSTFLEKPKDQVATARQHSTFTGRFGQPPRGPISLHMYSRKNVFLHHNL -------------------------------------------------------------- >In-frame_ENST00000508216_ENST00000333691_TCGA-NA-A4R0-01A_PDLIM5_chr4_95376535_+_CCSER1_chr4_92519723_length(transcript)=626nt_BP=140nt AGCATATTTCATTTTCTGTCATTGGACTTTGAGCCATTAGAACCATGAGCAACTACAGTGTGTCACTGGTTGGCCCAGCTCCTTGGGGTT TCCGGCTGCAGGGCGGTAAGGATTTCAACATGCCTCTGACAATCTCTAGTGCTACATATCGAAATCGAATTGTGAGCCAAAATCTCAGCA CAAGGGACAGAAAAGCAATACATACTCCCACCGAGGACCGTTTTAGGTATTCGGCAGCGGACCAGACAAGCCCCTACAAAAACAAGACCT GTCAACTCCCAAGTCTCTGTTTAAGTAATTTCCTGAAGGACAAGGAACTAGCAGAAGTTATCAAACATTCAAGAGGAACTTATGAAACCC TCACTTCAGACGTTACACAGAACTTACGGGCCACCGTTGGGCAGAGCTCTCTGAAGCCAACAGCTAAGACAGAAGGGCTCTCCACGTTCT TAGAGAAACCAAAGGACCAAGTTGCTACGGCCCGACAGCATTCGACCTTTACAGGCAGGTTTGGACAGCCACCCAGAGGGCCAATCTCTT >In-frame_ENST00000508216_ENST00000333691_TCGA-NA-A4R0-01A_PDLIM5_chr4_95376535_+_CCSER1_chr4_92519723_length(amino acids)=194AA_start in transcript=44_stop in transcript=625 MSNYSVSLVGPAPWGFRLQGGKDFNMPLTISSATYRNRIVSQNLSTRDRKAIHTPTEDRFRYSAADQTSPYKNKTCQLPSLCLSNFLKDK ELAEVIKHSRGTYETLTSDVTQNLRATVGQSSLKPTAKTEGLSTFLEKPKDQVATARQHSTFTGRFGQPPRGPISLHMYSRKNVFLHHNL -------------------------------------------------------------- >In-frame_ENST00000514743_ENST00000509176_TCGA-NA-A4R0-01A_PDLIM5_chr4_95376535_+_CCSER1_chr4_92519723_length(transcript)=3482nt_BP=140nt AGCATATTTCATTTTCTGTCATTGGACTTTGAGCCATTAGAACCATGAGCAACTACAGTGTGTCACTGGTTGGCCCAGCTCCTTGGGGTT TCCGGCTGCAGGGCGGTAAGGATTTCAACATGCCTCTGACAATCTCTAGTGCTACATATCGAAATCGAATTGTGAGCCAAAATCTCAGCA CAAGGGACAGAAAAGCAATACATACTCCCACCGAGGACCGTTTTAGGTATTCGGCAGCGGACCAGACAAGCCCCTACAAAAACAAGACCT GTCAACTCCCAAGTCTCTGTTTAAGTAATTTCCTGAAGGACAAGGAACTAGCAGAAGTTATCAAACATTCAAGAGGAACTTATGAAACCC TCACTTCAGACGTTACACAGAACTTACGGGCCACCGTTGGGCAGAGCTCTCTGAAGCCAACAGCTAAGACAGAAGGGCTCTCCACGTTCT TAGAGAAACCAAAGGACCAAGTTGCTACGGCCCGACAGCATTCGACCTTTACAGGCAGGTTTGGACAGCCACCCAGAGGGCCAATCTCTT TACACATGTACAGCAGGAAGAATGTGTTTCTCCACCACAATTTACACAGCACTGAGCTGCAAACTCTAGGCCAGCAGGATGGGTAATTAA ATCACCGTATTCCTGTCTTTGGGTAGGATAAAGATGGTTAGTGTTTCTCGTGCATAGTTCATATTAAAATTGTCATGTACTTTTTCTTAC ATTTTAGTTATAAACAGAGTTGTGTTGTTGGGTTTTTTTTCTTAGTCATAAACAAAGACTTGTGGGTTTTTTTTTTCCAAGAGTGAAAGT TTGAGCATGTTAATTGAACTAGGTTGCATTGCCTTGAAGACTTTACTATATAGGTGTATAATAAATGGGACCATCATGATCGTTTATATA GTCCATAATTTATTTATTTTTTATCTCTATCACTTACTGATATGCATTAAGGTTTCAGAAGATAATATCAAATAGCAATCTGTTCACTGT TAATGGTGTTACTATAAAAGTAGACCTGATGAAAAATAGATAAAGGAATTATAAAGAATTTTAAATTATATAATTAATAGAAGGAGGAAA AAAGAGAAATGTTAACGTCTTATATTTGGTGGTATATTTATTTGAAGAATGTGGCTTGCTTGCATGTAACCTAGAGATGTGTTTGTCTCT ATTACATACATTCAAGCTCATCTTGTGATACTAGTAAGGGGGAAATGGCTGTATTTTTTTTCCTTTAAACGTTTAGTTCATACTAGTTCA CAAAGGATTTCAGACAGAGTAATTGCTAGCCAAATAGAGAATGACAGCTCTGATCTTTGAAAAATTTTGCTTTTAGTTTTTGTTATTGAT GTTGAAGTACCGTGACATAACACAAGGTGATAAAGTTGGTTGAATTTTGTCAGATGATGCATAAATACTGACATGCTATATTCTTTGAGC CACTGTCATGGCAATATAAACATTTTTTCAAAATTTCAAGGATGAAACATCCTAAGAAAATTATTCTTTTTCTTTACTTTCCTTATTTTT TAAAATGTTCTTTTTTATGTAAATCCAATTTTGGTTTATATACATCAACCCATATCTATAATTTTATGAACTGAAGAACAGAAAGTCAGT ATTTTAGTAGCCAGCATACAATATTCTGACTATGCAGAAATCTAGATTTGGAACAAAAGTAAAGTAAATGTGAACATTGGCAATTTAATC TTAGAAATAAGCTTCTAACAGGAATATTTAAAACCCATTTGATGGCAAATATTTCTCTTTGACAAATAAGGCCCAAATATGTTATAATAT GTTATATACTTATGTGCACTTTAGATCAATATATGAATTGATCTATGGATAATTCCATCATGTTCAATTAGTAGCAGAGCAGAATCAAAG AGTACAATTGAATACATAAATAAATAATTTTTAAAAGACTAATAGGAATCAAGGCTGCAGTTTTCTTATACACATCAGAGCTGTTAAGTA CATCCACATTAGCCATAGTCCATGCAAATTGAAACTGTCATACCTACTGCATGATCTGTTTCCCTTGCATTTTCTAACAGAATCTGTCAG CGTGCACAAGCAAGATGAACAAAGGGAAATTGAGATAGCAGTTTTAGCATGGCATCTGACAACTTGCTTAAATTAAAGCTGTGTGCAAAA TGCATCTCCTATTATAAAAATGTATTTGTGCCCTGTGCTTTGGGGAAAAGCCATTAGACACTCCACCCCTGAGCTTTAACTACTGAACTT TGATACATTTGCAAACTTAGATTGGAACTGATAAAGTAAGGAGTCGAGTGGATATGTTGTACTTGTAATTTTGGTTTTCCAAAGGAACAC ACATGTGCATCAAGGCAGACATTTGCCAAATGTTTTCTTTCTTTGCGTGTTTGTAATTCTGCCAAAAGAGAACAATATACACTGCAAATT GCTTGACTTAATGAGATTGCCATCTAAAGTTCCCACCATACTTTGGAAGCTATAATGATCATGCAGATATACACTTTGGGCTGGGCAATA TTTAAGAAATGATAGGAAAATAGAAAAATCATGATTATTAATTGTGGAATTCAGCTTGATTTGTCCTAAATGTTGGTGTCTGTTGCTAGA GTATTTTAAATCTGTACATAAATAAGCATGATAAAATAATCAAGGATTTTTTCCCAGGATATGGAAGAACTATGTATCACAAATAATGTT TTTGATTTGGACTTTTGGAGTTGATAGTTTTGTTTTCCTGGAAGATAGACTTTTGAATTATACTTTATAAAAATAATCTATTTATAGAAG ATCTGTCATTTAATAGACATTTTAAGAGATGTTTTAAACGCTAGTATTTTCTTGAAAAATCTTTTTTAAAGCTGAATCATTCAAAAGAAA ACCTGGATTAAACAGTTCGATTTTAAAAGGAAGGGTATTTTTTGGAAATATCATCTTAAAGCTGTTTTGTATCAGTATTTTCAACATTGT TATAATATTATTTGTAATACTAAGTGTAACTCAGGCCTGGAGAAGGTGTAAGCCCACTATGCTAATGTACATCAGTAACTGTAAAACAGG GGTTCTTTGTAAGTTCCTCTTGTGTATATATAGTAACTTATAACAATGGCATGTGGGCATTCTTTCAGTGAATTGCTTTCTTTGTACTAA AATCTCTAGTTTTCTAAGACAGTTCCATGTATAAAAATGATTTATGCATTTCTCCAAGGCGGTACATATCCAAAGACATGACACCAGGGG GAAAAAGTGCTTGTTTTTCTGATGGAAGCAGTGGTCTTTTCTTTTCTTTCCTCTTTCTTTTGTGCATGTGTATGTGTAGCTAAGCCTAAA TAACCCTGTAAAATTTCTGCTGCAAATTGTCTCTTCTGAATTTAGAATGTGTTTTAAAGGAACACTTAGGAAGAGAAATACCTTGAAGAA >In-frame_ENST00000514743_ENST00000509176_TCGA-NA-A4R0-01A_PDLIM5_chr4_95376535_+_CCSER1_chr4_92519723_length(amino acids)=193AA_start in transcript=44_stop in transcript=625 MSNYSVSLVGPAPWGFRLQGGKDFNMPLTISSATYRNRIVSQNLSTRDRKAIHTPTEDRFRYSAADQTSPYKNKTCQLPSLCLSNFLKDK ELAEVIKHSRGTYETLTSDVTQNLRATVGQSSLKPTAKTEGLSTFLEKPKDQVATARQHSTFTGRFGQPPRGPISLHMYSRKNVFLHHNL -------------------------------------------------------------- >In-frame_ENST00000514743_ENST00000333691_TCGA-NA-A4R0-01A_PDLIM5_chr4_95376535_+_CCSER1_chr4_92519723_length(transcript)=626nt_BP=140nt AGCATATTTCATTTTCTGTCATTGGACTTTGAGCCATTAGAACCATGAGCAACTACAGTGTGTCACTGGTTGGCCCAGCTCCTTGGGGTT TCCGGCTGCAGGGCGGTAAGGATTTCAACATGCCTCTGACAATCTCTAGTGCTACATATCGAAATCGAATTGTGAGCCAAAATCTCAGCA CAAGGGACAGAAAAGCAATACATACTCCCACCGAGGACCGTTTTAGGTATTCGGCAGCGGACCAGACAAGCCCCTACAAAAACAAGACCT GTCAACTCCCAAGTCTCTGTTTAAGTAATTTCCTGAAGGACAAGGAACTAGCAGAAGTTATCAAACATTCAAGAGGAACTTATGAAACCC TCACTTCAGACGTTACACAGAACTTACGGGCCACCGTTGGGCAGAGCTCTCTGAAGCCAACAGCTAAGACAGAAGGGCTCTCCACGTTCT TAGAGAAACCAAAGGACCAAGTTGCTACGGCCCGACAGCATTCGACCTTTACAGGCAGGTTTGGACAGCCACCCAGAGGGCCAATCTCTT >In-frame_ENST00000514743_ENST00000333691_TCGA-NA-A4R0-01A_PDLIM5_chr4_95376535_+_CCSER1_chr4_92519723_length(amino acids)=194AA_start in transcript=44_stop in transcript=625 MSNYSVSLVGPAPWGFRLQGGKDFNMPLTISSATYRNRIVSQNLSTRDRKAIHTPTEDRFRYSAADQTSPYKNKTCQLPSLCLSNFLKDK ELAEVIKHSRGTYETLTSDVTQNLRATVGQSSLKPTAKTEGLSTFLEKPKDQVATARQHSTFTGRFGQPPRGPISLHMYSRKNVFLHHNL -------------------------------------------------------------- >In-frame_ENST00000359265_ENST00000509176_TCGA-NA-A4R0-01A_PDLIM5_chr4_95376535_+_CCSER1_chr4_92519723_length(transcript)=3590nt_BP=248nt GAGCCAGGAGGCGGAAGTTCCCGCGGGCGGTGGGGACGGCGCCCTCACCGCGAGTCACTTGTCAGCCCTTGTCTGAGGCGGAGGCAGCCC CGCGCCGCGCCGGACCCGAGCATATTTCATTTTCTGTCATTGGACTTTGAGCCATTAGAACCATGAGCAACTACAGTGTGTCACTGGTTG GCCCAGCTCCTTGGGGTTTCCGGCTGCAGGGCGGTAAGGATTTCAACATGCCTCTGACAATCTCTAGTGCTACATATCGAAATCGAATTG TGAGCCAAAATCTCAGCACAAGGGACAGAAAAGCAATACATACTCCCACCGAGGACCGTTTTAGGTATTCGGCAGCGGACCAGACAAGCC CCTACAAAAACAAGACCTGTCAACTCCCAAGTCTCTGTTTAAGTAATTTCCTGAAGGACAAGGAACTAGCAGAAGTTATCAAACATTCAA GAGGAACTTATGAAACCCTCACTTCAGACGTTACACAGAACTTACGGGCCACCGTTGGGCAGAGCTCTCTGAAGCCAACAGCTAAGACAG AAGGGCTCTCCACGTTCTTAGAGAAACCAAAGGACCAAGTTGCTACGGCCCGACAGCATTCGACCTTTACAGGCAGGTTTGGACAGCCAC CCAGAGGGCCAATCTCTTTACACATGTACAGCAGGAAGAATGTGTTTCTCCACCACAATTTACACAGCACTGAGCTGCAAACTCTAGGCC AGCAGGATGGGTAATTAAATCACCGTATTCCTGTCTTTGGGTAGGATAAAGATGGTTAGTGTTTCTCGTGCATAGTTCATATTAAAATTG TCATGTACTTTTTCTTACATTTTAGTTATAAACAGAGTTGTGTTGTTGGGTTTTTTTTCTTAGTCATAAACAAAGACTTGTGGGTTTTTT TTTTCCAAGAGTGAAAGTTTGAGCATGTTAATTGAACTAGGTTGCATTGCCTTGAAGACTTTACTATATAGGTGTATAATAAATGGGACC ATCATGATCGTTTATATAGTCCATAATTTATTTATTTTTTATCTCTATCACTTACTGATATGCATTAAGGTTTCAGAAGATAATATCAAA TAGCAATCTGTTCACTGTTAATGGTGTTACTATAAAAGTAGACCTGATGAAAAATAGATAAAGGAATTATAAAGAATTTTAAATTATATA ATTAATAGAAGGAGGAAAAAAGAGAAATGTTAACGTCTTATATTTGGTGGTATATTTATTTGAAGAATGTGGCTTGCTTGCATGTAACCT AGAGATGTGTTTGTCTCTATTACATACATTCAAGCTCATCTTGTGATACTAGTAAGGGGGAAATGGCTGTATTTTTTTTCCTTTAAACGT TTAGTTCATACTAGTTCACAAAGGATTTCAGACAGAGTAATTGCTAGCCAAATAGAGAATGACAGCTCTGATCTTTGAAAAATTTTGCTT TTAGTTTTTGTTATTGATGTTGAAGTACCGTGACATAACACAAGGTGATAAAGTTGGTTGAATTTTGTCAGATGATGCATAAATACTGAC ATGCTATATTCTTTGAGCCACTGTCATGGCAATATAAACATTTTTTCAAAATTTCAAGGATGAAACATCCTAAGAAAATTATTCTTTTTC TTTACTTTCCTTATTTTTTAAAATGTTCTTTTTTATGTAAATCCAATTTTGGTTTATATACATCAACCCATATCTATAATTTTATGAACT GAAGAACAGAAAGTCAGTATTTTAGTAGCCAGCATACAATATTCTGACTATGCAGAAATCTAGATTTGGAACAAAAGTAAAGTAAATGTG AACATTGGCAATTTAATCTTAGAAATAAGCTTCTAACAGGAATATTTAAAACCCATTTGATGGCAAATATTTCTCTTTGACAAATAAGGC CCAAATATGTTATAATATGTTATATACTTATGTGCACTTTAGATCAATATATGAATTGATCTATGGATAATTCCATCATGTTCAATTAGT AGCAGAGCAGAATCAAAGAGTACAATTGAATACATAAATAAATAATTTTTAAAAGACTAATAGGAATCAAGGCTGCAGTTTTCTTATACA CATCAGAGCTGTTAAGTACATCCACATTAGCCATAGTCCATGCAAATTGAAACTGTCATACCTACTGCATGATCTGTTTCCCTTGCATTT TCTAACAGAATCTGTCAGCGTGCACAAGCAAGATGAACAAAGGGAAATTGAGATAGCAGTTTTAGCATGGCATCTGACAACTTGCTTAAA TTAAAGCTGTGTGCAAAATGCATCTCCTATTATAAAAATGTATTTGTGCCCTGTGCTTTGGGGAAAAGCCATTAGACACTCCACCCCTGA GCTTTAACTACTGAACTTTGATACATTTGCAAACTTAGATTGGAACTGATAAAGTAAGGAGTCGAGTGGATATGTTGTACTTGTAATTTT GGTTTTCCAAAGGAACACACATGTGCATCAAGGCAGACATTTGCCAAATGTTTTCTTTCTTTGCGTGTTTGTAATTCTGCCAAAAGAGAA CAATATACACTGCAAATTGCTTGACTTAATGAGATTGCCATCTAAAGTTCCCACCATACTTTGGAAGCTATAATGATCATGCAGATATAC ACTTTGGGCTGGGCAATATTTAAGAAATGATAGGAAAATAGAAAAATCATGATTATTAATTGTGGAATTCAGCTTGATTTGTCCTAAATG TTGGTGTCTGTTGCTAGAGTATTTTAAATCTGTACATAAATAAGCATGATAAAATAATCAAGGATTTTTTCCCAGGATATGGAAGAACTA TGTATCACAAATAATGTTTTTGATTTGGACTTTTGGAGTTGATAGTTTTGTTTTCCTGGAAGATAGACTTTTGAATTATACTTTATAAAA ATAATCTATTTATAGAAGATCTGTCATTTAATAGACATTTTAAGAGATGTTTTAAACGCTAGTATTTTCTTGAAAAATCTTTTTTAAAGC TGAATCATTCAAAAGAAAACCTGGATTAAACAGTTCGATTTTAAAAGGAAGGGTATTTTTTGGAAATATCATCTTAAAGCTGTTTTGTAT CAGTATTTTCAACATTGTTATAATATTATTTGTAATACTAAGTGTAACTCAGGCCTGGAGAAGGTGTAAGCCCACTATGCTAATGTACAT CAGTAACTGTAAAACAGGGGTTCTTTGTAAGTTCCTCTTGTGTATATATAGTAACTTATAACAATGGCATGTGGGCATTCTTTCAGTGAA TTGCTTTCTTTGTACTAAAATCTCTAGTTTTCTAAGACAGTTCCATGTATAAAAATGATTTATGCATTTCTCCAAGGCGGTACATATCCA AAGACATGACACCAGGGGGAAAAAGTGCTTGTTTTTCTGATGGAAGCAGTGGTCTTTTCTTTTCTTTCCTCTTTCTTTTGTGCATGTGTA TGTGTAGCTAAGCCTAAATAACCCTGTAAAATTTCTGCTGCAAATTGTCTCTTCTGAATTTAGAATGTGTTTTAAAGGAACACTTAGGAA >In-frame_ENST00000359265_ENST00000509176_TCGA-NA-A4R0-01A_PDLIM5_chr4_95376535_+_CCSER1_chr4_92519723_length(amino acids)=193AA_start in transcript=152_stop in transcript=733 MSNYSVSLVGPAPWGFRLQGGKDFNMPLTISSATYRNRIVSQNLSTRDRKAIHTPTEDRFRYSAADQTSPYKNKTCQLPSLCLSNFLKDK ELAEVIKHSRGTYETLTSDVTQNLRATVGQSSLKPTAKTEGLSTFLEKPKDQVATARQHSTFTGRFGQPPRGPISLHMYSRKNVFLHHNL -------------------------------------------------------------- >In-frame_ENST00000359265_ENST00000333691_TCGA-NA-A4R0-01A_PDLIM5_chr4_95376535_+_CCSER1_chr4_92519723_length(transcript)=734nt_BP=248nt GAGCCAGGAGGCGGAAGTTCCCGCGGGCGGTGGGGACGGCGCCCTCACCGCGAGTCACTTGTCAGCCCTTGTCTGAGGCGGAGGCAGCCC CGCGCCGCGCCGGACCCGAGCATATTTCATTTTCTGTCATTGGACTTTGAGCCATTAGAACCATGAGCAACTACAGTGTGTCACTGGTTG GCCCAGCTCCTTGGGGTTTCCGGCTGCAGGGCGGTAAGGATTTCAACATGCCTCTGACAATCTCTAGTGCTACATATCGAAATCGAATTG TGAGCCAAAATCTCAGCACAAGGGACAGAAAAGCAATACATACTCCCACCGAGGACCGTTTTAGGTATTCGGCAGCGGACCAGACAAGCC CCTACAAAAACAAGACCTGTCAACTCCCAAGTCTCTGTTTAAGTAATTTCCTGAAGGACAAGGAACTAGCAGAAGTTATCAAACATTCAA GAGGAACTTATGAAACCCTCACTTCAGACGTTACACAGAACTTACGGGCCACCGTTGGGCAGAGCTCTCTGAAGCCAACAGCTAAGACAG AAGGGCTCTCCACGTTCTTAGAGAAACCAAAGGACCAAGTTGCTACGGCCCGACAGCATTCGACCTTTACAGGCAGGTTTGGACAGCCAC CCAGAGGGCCAATCTCTTTACACATGTACAGCAGGAAGAATGTGTTTCTCCACCACAATTTACACAGCACTGAGCTGCAAACTCTAGGCC >In-frame_ENST00000359265_ENST00000333691_TCGA-NA-A4R0-01A_PDLIM5_chr4_95376535_+_CCSER1_chr4_92519723_length(amino acids)=194AA_start in transcript=152_stop in transcript=733 MSNYSVSLVGPAPWGFRLQGGKDFNMPLTISSATYRNRIVSQNLSTRDRKAIHTPTEDRFRYSAADQTSPYKNKTCQLPSLCLSNFLKDK ELAEVIKHSRGTYETLTSDVTQNLRATVGQSSLKPTAKTEGLSTFLEKPKDQVATARQHSTFTGRFGQPPRGPISLHMYSRKNVFLHHNL -------------------------------------------------------------- >In-frame_ENST00000504489_ENST00000509176_TCGA-NA-A4R0-01A_PDLIM5_chr4_95376535_+_CCSER1_chr4_92519723_length(transcript)=3534nt_BP=192nt ACTTGTCAGCCCTTGTCTGAGGCGGAGGCAGCCCCGCGCCGCGCCGGACCCGAGCATATTTCATTTTCTGTCATTGGACTTTGAGCCATT AGAACCATGAGCAACTACAGTGTGTCACTGGTTGGCCCAGCTCCTTGGGGTTTCCGGCTGCAGGGCGGTAAGGATTTCAACATGCCTCTG ACAATCTCTAGTGCTACATATCGAAATCGAATTGTGAGCCAAAATCTCAGCACAAGGGACAGAAAAGCAATACATACTCCCACCGAGGAC CGTTTTAGGTATTCGGCAGCGGACCAGACAAGCCCCTACAAAAACAAGACCTGTCAACTCCCAAGTCTCTGTTTAAGTAATTTCCTGAAG GACAAGGAACTAGCAGAAGTTATCAAACATTCAAGAGGAACTTATGAAACCCTCACTTCAGACGTTACACAGAACTTACGGGCCACCGTT GGGCAGAGCTCTCTGAAGCCAACAGCTAAGACAGAAGGGCTCTCCACGTTCTTAGAGAAACCAAAGGACCAAGTTGCTACGGCCCGACAG CATTCGACCTTTACAGGCAGGTTTGGACAGCCACCCAGAGGGCCAATCTCTTTACACATGTACAGCAGGAAGAATGTGTTTCTCCACCAC AATTTACACAGCACTGAGCTGCAAACTCTAGGCCAGCAGGATGGGTAATTAAATCACCGTATTCCTGTCTTTGGGTAGGATAAAGATGGT TAGTGTTTCTCGTGCATAGTTCATATTAAAATTGTCATGTACTTTTTCTTACATTTTAGTTATAAACAGAGTTGTGTTGTTGGGTTTTTT TTCTTAGTCATAAACAAAGACTTGTGGGTTTTTTTTTTCCAAGAGTGAAAGTTTGAGCATGTTAATTGAACTAGGTTGCATTGCCTTGAA GACTTTACTATATAGGTGTATAATAAATGGGACCATCATGATCGTTTATATAGTCCATAATTTATTTATTTTTTATCTCTATCACTTACT GATATGCATTAAGGTTTCAGAAGATAATATCAAATAGCAATCTGTTCACTGTTAATGGTGTTACTATAAAAGTAGACCTGATGAAAAATA GATAAAGGAATTATAAAGAATTTTAAATTATATAATTAATAGAAGGAGGAAAAAAGAGAAATGTTAACGTCTTATATTTGGTGGTATATT TATTTGAAGAATGTGGCTTGCTTGCATGTAACCTAGAGATGTGTTTGTCTCTATTACATACATTCAAGCTCATCTTGTGATACTAGTAAG GGGGAAATGGCTGTATTTTTTTTCCTTTAAACGTTTAGTTCATACTAGTTCACAAAGGATTTCAGACAGAGTAATTGCTAGCCAAATAGA GAATGACAGCTCTGATCTTTGAAAAATTTTGCTTTTAGTTTTTGTTATTGATGTTGAAGTACCGTGACATAACACAAGGTGATAAAGTTG GTTGAATTTTGTCAGATGATGCATAAATACTGACATGCTATATTCTTTGAGCCACTGTCATGGCAATATAAACATTTTTTCAAAATTTCA AGGATGAAACATCCTAAGAAAATTATTCTTTTTCTTTACTTTCCTTATTTTTTAAAATGTTCTTTTTTATGTAAATCCAATTTTGGTTTA TATACATCAACCCATATCTATAATTTTATGAACTGAAGAACAGAAAGTCAGTATTTTAGTAGCCAGCATACAATATTCTGACTATGCAGA AATCTAGATTTGGAACAAAAGTAAAGTAAATGTGAACATTGGCAATTTAATCTTAGAAATAAGCTTCTAACAGGAATATTTAAAACCCAT TTGATGGCAAATATTTCTCTTTGACAAATAAGGCCCAAATATGTTATAATATGTTATATACTTATGTGCACTTTAGATCAATATATGAAT TGATCTATGGATAATTCCATCATGTTCAATTAGTAGCAGAGCAGAATCAAAGAGTACAATTGAATACATAAATAAATAATTTTTAAAAGA CTAATAGGAATCAAGGCTGCAGTTTTCTTATACACATCAGAGCTGTTAAGTACATCCACATTAGCCATAGTCCATGCAAATTGAAACTGT CATACCTACTGCATGATCTGTTTCCCTTGCATTTTCTAACAGAATCTGTCAGCGTGCACAAGCAAGATGAACAAAGGGAAATTGAGATAG CAGTTTTAGCATGGCATCTGACAACTTGCTTAAATTAAAGCTGTGTGCAAAATGCATCTCCTATTATAAAAATGTATTTGTGCCCTGTGC TTTGGGGAAAAGCCATTAGACACTCCACCCCTGAGCTTTAACTACTGAACTTTGATACATTTGCAAACTTAGATTGGAACTGATAAAGTA AGGAGTCGAGTGGATATGTTGTACTTGTAATTTTGGTTTTCCAAAGGAACACACATGTGCATCAAGGCAGACATTTGCCAAATGTTTTCT TTCTTTGCGTGTTTGTAATTCTGCCAAAAGAGAACAATATACACTGCAAATTGCTTGACTTAATGAGATTGCCATCTAAAGTTCCCACCA TACTTTGGAAGCTATAATGATCATGCAGATATACACTTTGGGCTGGGCAATATTTAAGAAATGATAGGAAAATAGAAAAATCATGATTAT TAATTGTGGAATTCAGCTTGATTTGTCCTAAATGTTGGTGTCTGTTGCTAGAGTATTTTAAATCTGTACATAAATAAGCATGATAAAATA ATCAAGGATTTTTTCCCAGGATATGGAAGAACTATGTATCACAAATAATGTTTTTGATTTGGACTTTTGGAGTTGATAGTTTTGTTTTCC TGGAAGATAGACTTTTGAATTATACTTTATAAAAATAATCTATTTATAGAAGATCTGTCATTTAATAGACATTTTAAGAGATGTTTTAAA CGCTAGTATTTTCTTGAAAAATCTTTTTTAAAGCTGAATCATTCAAAAGAAAACCTGGATTAAACAGTTCGATTTTAAAAGGAAGGGTAT TTTTTGGAAATATCATCTTAAAGCTGTTTTGTATCAGTATTTTCAACATTGTTATAATATTATTTGTAATACTAAGTGTAACTCAGGCCT GGAGAAGGTGTAAGCCCACTATGCTAATGTACATCAGTAACTGTAAAACAGGGGTTCTTTGTAAGTTCCTCTTGTGTATATATAGTAACT TATAACAATGGCATGTGGGCATTCTTTCAGTGAATTGCTTTCTTTGTACTAAAATCTCTAGTTTTCTAAGACAGTTCCATGTATAAAAAT GATTTATGCATTTCTCCAAGGCGGTACATATCCAAAGACATGACACCAGGGGGAAAAAGTGCTTGTTTTTCTGATGGAAGCAGTGGTCTT TTCTTTTCTTTCCTCTTTCTTTTGTGCATGTGTATGTGTAGCTAAGCCTAAATAACCCTGTAAAATTTCTGCTGCAAATTGTCTCTTCTG AATTTAGAATGTGTTTTAAAGGAACACTTAGGAAGAGAAATACCTTGAAGAAAAGCTGTTTCCACCTGAAATAAACTGTTCCCATTTTTA >In-frame_ENST00000504489_ENST00000509176_TCGA-NA-A4R0-01A_PDLIM5_chr4_95376535_+_CCSER1_chr4_92519723_length(amino acids)=193AA_start in transcript=96_stop in transcript=677 MSNYSVSLVGPAPWGFRLQGGKDFNMPLTISSATYRNRIVSQNLSTRDRKAIHTPTEDRFRYSAADQTSPYKNKTCQLPSLCLSNFLKDK ELAEVIKHSRGTYETLTSDVTQNLRATVGQSSLKPTAKTEGLSTFLEKPKDQVATARQHSTFTGRFGQPPRGPISLHMYSRKNVFLHHNL -------------------------------------------------------------- >In-frame_ENST00000504489_ENST00000333691_TCGA-NA-A4R0-01A_PDLIM5_chr4_95376535_+_CCSER1_chr4_92519723_length(transcript)=678nt_BP=192nt ACTTGTCAGCCCTTGTCTGAGGCGGAGGCAGCCCCGCGCCGCGCCGGACCCGAGCATATTTCATTTTCTGTCATTGGACTTTGAGCCATT AGAACCATGAGCAACTACAGTGTGTCACTGGTTGGCCCAGCTCCTTGGGGTTTCCGGCTGCAGGGCGGTAAGGATTTCAACATGCCTCTG ACAATCTCTAGTGCTACATATCGAAATCGAATTGTGAGCCAAAATCTCAGCACAAGGGACAGAAAAGCAATACATACTCCCACCGAGGAC CGTTTTAGGTATTCGGCAGCGGACCAGACAAGCCCCTACAAAAACAAGACCTGTCAACTCCCAAGTCTCTGTTTAAGTAATTTCCTGAAG GACAAGGAACTAGCAGAAGTTATCAAACATTCAAGAGGAACTTATGAAACCCTCACTTCAGACGTTACACAGAACTTACGGGCCACCGTT GGGCAGAGCTCTCTGAAGCCAACAGCTAAGACAGAAGGGCTCTCCACGTTCTTAGAGAAACCAAAGGACCAAGTTGCTACGGCCCGACAG CATTCGACCTTTACAGGCAGGTTTGGACAGCCACCCAGAGGGCCAATCTCTTTACACATGTACAGCAGGAAGAATGTGTTTCTCCACCAC >In-frame_ENST00000504489_ENST00000333691_TCGA-NA-A4R0-01A_PDLIM5_chr4_95376535_+_CCSER1_chr4_92519723_length(amino acids)=193AA_start in transcript=96_stop in transcript=677 MSNYSVSLVGPAPWGFRLQGGKDFNMPLTISSATYRNRIVSQNLSTRDRKAIHTPTEDRFRYSAADQTSPYKNKTCQLPSLCLSNFLKDK ELAEVIKHSRGTYETLTSDVTQNLRATVGQSSLKPTAKTEGLSTFLEKPKDQVATARQHSTFTGRFGQPPRGPISLHMYSRKNVFLHHNL -------------------------------------------------------------- |
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Fusion Gene PPI Analysis for PDLIM5-CCSER1 |
Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in |
Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
Hgene | Hgene's interactors | Tgene | Tgene's interactors |
- Retained PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
- Lost PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
- Retained PPIs, but lost function due to frame-shift fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Related Drugs for PDLIM5-CCSER1 |
Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.8 2021-05-08) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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Related Diseases for PDLIM5-CCSER1 |
Diseases associated with fusion partners. (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Hgene | PDLIM5 | C0005586 | Bipolar Disorder | 5 | PSYGENET |
Hgene | PDLIM5 | C0036341 | Schizophrenia | 4 | PSYGENET |
Hgene | PDLIM5 | C0041696 | Unipolar Depression | 4 | PSYGENET |
Hgene | PDLIM5 | C1269683 | Major Depressive Disorder | 4 | PSYGENET |
Hgene | PDLIM5 | C0019193 | Hepatitis, Toxic | 1 | CTD_human |
Hgene | PDLIM5 | C0151744 | Myocardial Ischemia | 1 | CTD_human |
Hgene | PDLIM5 | C0860207 | Drug-Induced Liver Disease | 1 | CTD_human |
Hgene | PDLIM5 | C1262760 | Hepatitis, Drug-Induced | 1 | CTD_human |
Hgene | PDLIM5 | C3658290 | Drug-Induced Acute Liver Injury | 1 | CTD_human |
Hgene | PDLIM5 | C4277682 | Chemical and Drug Induced Liver Injury | 1 | CTD_human |
Hgene | PDLIM5 | C4279912 | Chemically-Induced Liver Toxicity | 1 | CTD_human |
Tgene | CCSER1 | C0009171 | Cocaine Abuse | 1 | CTD_human |
Tgene | CCSER1 | C0236736 | Cocaine-Related Disorders | 1 | CTD_human |
Tgene | CCSER1 | C0600427 | Cocaine Dependence | 1 | CTD_human |