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Fusion Gene Summary | |
Fusion Gene ORF analysis | |
Fusion Genomic Features | |
Fusion Protein Features | |
Fusion Gene Sequence | |
Fusion Gene PPI analysis | |
Related Drugs | |
Related Diseases |
Fusion gene:PHF21A-GDPD5 (FusionGDB2 ID:64448) |
Fusion Gene Summary for PHF21A-GDPD5 |
Fusion gene summary |
Fusion gene information | Fusion gene name: PHF21A-GDPD5 | Fusion gene ID: 64448 | Hgene | Tgene | Gene symbol | PHF21A | GDPD5 | Gene ID | 51317 | 81544 |
Gene name | PHD finger protein 21A | glycerophosphodiester phosphodiesterase domain containing 5 | |
Synonyms | BHC80|BM-006|IDDBCS|NEDMS | GDE2|PP1665 | |
Cytomap | 11p11.2 | 11q13.4-q13.5 | |
Type of gene | protein-coding | protein-coding | |
Description | PHD finger protein 21ABHC80aBRAF35-HDAC complex protein BHC80BRAF35/HDAC2 complex (80 kDa) | glycerophosphodiester phosphodiesterase domain-containing protein 5glycerophosphodiester phosphodiesterase 2 | |
Modification date | 20200327 | 20200313 | |
UniProtAcc | . | Q8WTR4 | |
Ensembl transtripts involved in fusion gene | ENST00000257821, ENST00000323180, ENST00000418153, ENST00000527753, | ENST00000336898, ENST00000376282, ENST00000529095, ENST00000526177, ENST00000533784, ENST00000529721, ENST00000533805, ENST00000443276, | |
Fusion gene scores | * DoF score | 19 X 13 X 12=2964 | 9 X 7 X 7=441 |
# samples | 22 | 14 | |
** MAII score | log2(22/2964*10)=-3.75197001878117 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(14/441*10)=-1.65535182861255 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
Context | PubMed: PHF21A [Title/Abstract] AND GDPD5 [Title/Abstract] AND fusion [Title/Abstract] | ||
Most frequent breakpoint | PHF21A(45991366)-GDPD5(75173934), # samples:1 | ||
Anticipated loss of major functional domain due to fusion event. |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
Partner | Gene | GO ID | GO term | PubMed ID |
Fusion gene breakpoints across PHF21A (5'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
Fusion gene breakpoints across GDPD5 (3'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Source | Disease | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
ChimerDB4 | UCS | TCGA-N6-A4VF | PHF21A | chr11 | 45991366 | - | GDPD5 | chr11 | 75173934 | - |
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Fusion Gene ORF analysis for PHF21A-GDPD5 |
Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
In-frame | ENST00000257821 | ENST00000336898 | PHF21A | chr11 | 45991366 | - | GDPD5 | chr11 | 75173934 | - |
5CDS-intron | ENST00000257821 | ENST00000376282 | PHF21A | chr11 | 45991366 | - | GDPD5 | chr11 | 75173934 | - |
5CDS-intron | ENST00000257821 | ENST00000529095 | PHF21A | chr11 | 45991366 | - | GDPD5 | chr11 | 75173934 | - |
5CDS-intron | ENST00000257821 | ENST00000526177 | PHF21A | chr11 | 45991366 | - | GDPD5 | chr11 | 75173934 | - |
5CDS-intron | ENST00000257821 | ENST00000533784 | PHF21A | chr11 | 45991366 | - | GDPD5 | chr11 | 75173934 | - |
5CDS-intron | ENST00000257821 | ENST00000529721 | PHF21A | chr11 | 45991366 | - | GDPD5 | chr11 | 75173934 | - |
5CDS-intron | ENST00000257821 | ENST00000533805 | PHF21A | chr11 | 45991366 | - | GDPD5 | chr11 | 75173934 | - |
5CDS-intron | ENST00000257821 | ENST00000443276 | PHF21A | chr11 | 45991366 | - | GDPD5 | chr11 | 75173934 | - |
In-frame | ENST00000323180 | ENST00000336898 | PHF21A | chr11 | 45991366 | - | GDPD5 | chr11 | 75173934 | - |
5CDS-intron | ENST00000323180 | ENST00000376282 | PHF21A | chr11 | 45991366 | - | GDPD5 | chr11 | 75173934 | - |
5CDS-intron | ENST00000323180 | ENST00000529095 | PHF21A | chr11 | 45991366 | - | GDPD5 | chr11 | 75173934 | - |
5CDS-intron | ENST00000323180 | ENST00000526177 | PHF21A | chr11 | 45991366 | - | GDPD5 | chr11 | 75173934 | - |
5CDS-intron | ENST00000323180 | ENST00000533784 | PHF21A | chr11 | 45991366 | - | GDPD5 | chr11 | 75173934 | - |
5CDS-intron | ENST00000323180 | ENST00000529721 | PHF21A | chr11 | 45991366 | - | GDPD5 | chr11 | 75173934 | - |
5CDS-intron | ENST00000323180 | ENST00000533805 | PHF21A | chr11 | 45991366 | - | GDPD5 | chr11 | 75173934 | - |
5CDS-intron | ENST00000323180 | ENST00000443276 | PHF21A | chr11 | 45991366 | - | GDPD5 | chr11 | 75173934 | - |
In-frame | ENST00000418153 | ENST00000336898 | PHF21A | chr11 | 45991366 | - | GDPD5 | chr11 | 75173934 | - |
5CDS-intron | ENST00000418153 | ENST00000376282 | PHF21A | chr11 | 45991366 | - | GDPD5 | chr11 | 75173934 | - |
5CDS-intron | ENST00000418153 | ENST00000529095 | PHF21A | chr11 | 45991366 | - | GDPD5 | chr11 | 75173934 | - |
5CDS-intron | ENST00000418153 | ENST00000526177 | PHF21A | chr11 | 45991366 | - | GDPD5 | chr11 | 75173934 | - |
5CDS-intron | ENST00000418153 | ENST00000533784 | PHF21A | chr11 | 45991366 | - | GDPD5 | chr11 | 75173934 | - |
5CDS-intron | ENST00000418153 | ENST00000529721 | PHF21A | chr11 | 45991366 | - | GDPD5 | chr11 | 75173934 | - |
5CDS-intron | ENST00000418153 | ENST00000533805 | PHF21A | chr11 | 45991366 | - | GDPD5 | chr11 | 75173934 | - |
5CDS-intron | ENST00000418153 | ENST00000443276 | PHF21A | chr11 | 45991366 | - | GDPD5 | chr11 | 75173934 | - |
intron-3CDS | ENST00000527753 | ENST00000336898 | PHF21A | chr11 | 45991366 | - | GDPD5 | chr11 | 75173934 | - |
intron-intron | ENST00000527753 | ENST00000376282 | PHF21A | chr11 | 45991366 | - | GDPD5 | chr11 | 75173934 | - |
intron-intron | ENST00000527753 | ENST00000529095 | PHF21A | chr11 | 45991366 | - | GDPD5 | chr11 | 75173934 | - |
intron-intron | ENST00000527753 | ENST00000526177 | PHF21A | chr11 | 45991366 | - | GDPD5 | chr11 | 75173934 | - |
intron-intron | ENST00000527753 | ENST00000533784 | PHF21A | chr11 | 45991366 | - | GDPD5 | chr11 | 75173934 | - |
intron-intron | ENST00000527753 | ENST00000529721 | PHF21A | chr11 | 45991366 | - | GDPD5 | chr11 | 75173934 | - |
intron-intron | ENST00000527753 | ENST00000533805 | PHF21A | chr11 | 45991366 | - | GDPD5 | chr11 | 75173934 | - |
intron-intron | ENST00000527753 | ENST00000443276 | PHF21A | chr11 | 45991366 | - | GDPD5 | chr11 | 75173934 | - |
ORFfinder result based on the fusion transcript sequence of in-frame fusion genes. |
Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | Seq length (transcript) | BP loci (transcript) | Predicted start (transcript) | Predicted stop (transcript) | Seq length (amino acids) |
ENST00000257821 | PHF21A | chr11 | 45991366 | - | ENST00000336898 | GDPD5 | chr11 | 75173934 | - | 3894 | 1326 | 624 | 3026 | 800 |
ENST00000323180 | PHF21A | chr11 | 45991366 | - | ENST00000336898 | GDPD5 | chr11 | 75173934 | - | 3638 | 1070 | 368 | 2770 | 800 |
ENST00000418153 | PHF21A | chr11 | 45991366 | - | ENST00000336898 | GDPD5 | chr11 | 75173934 | - | 3467 | 899 | 200 | 2599 | 799 |
DeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated. |
Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | No-coding score | Coding score |
ENST00000257821 | ENST00000336898 | PHF21A | chr11 | 45991366 | - | GDPD5 | chr11 | 75173934 | - | 0.016377117 | 0.98362285 |
ENST00000323180 | ENST00000336898 | PHF21A | chr11 | 45991366 | - | GDPD5 | chr11 | 75173934 | - | 0.021489909 | 0.97851 |
ENST00000418153 | ENST00000336898 | PHF21A | chr11 | 45991366 | - | GDPD5 | chr11 | 75173934 | - | 0.01784984 | 0.98215014 |
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Fusion Genomic Features for PHF21A-GDPD5 |
FusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints. |
Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | 1-p | p (fusion gene breakpoint) |
Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page. |
Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page. |
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Fusion Protein Features for PHF21A-GDPD5 |
Go to FGviewer for the breakpoints of chr11:45991366-chr11:75173934 - FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels. |
Main function of each fusion partner protein. (from UniProt) |
Hgene | Tgene |
. | GDPD5 |
FUNCTION: Might normally function as a transcriptional repressor. EWS-fusion-proteins (EFPS) may play a role in the tumorigenic process. They may disturb gene expression by mimicking, or interfering with the normal function of CTD-POLII within the transcription initiation complex. They may also contribute to an aberrant activation of the fusion protein target genes. | FUNCTION: Glycerophosphodiester phosphodiesterase that promotes neurite formation and drives spinal motor neuron differentiation (By similarity). Mediates the cleavage of glycosylphosphatidylinositol (GPI) anchor of target proteins: removes the GPI-anchor of RECK, leading to release RECK from the plasma membrane (By similarity). May contribute to the osmotic regulation of cellular glycerophosphocholine (By similarity). {ECO:0000250|UniProtKB:Q3KTM2, ECO:0000250|UniProtKB:Q640M6}. |
Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | PHF21A | chr11:45991366 | chr11:75173934 | ENST00000257821 | - | 8 | 18 | 4_108 | 234.0 | 682.0 | Compositional bias | Note=Gln-rich |
Hgene | PHF21A | chr11:45991366 | chr11:75173934 | ENST00000323180 | - | 8 | 18 | 4_108 | 234.0 | 635.0 | Compositional bias | Note=Gln-rich |
Hgene | PHF21A | chr11:45991366 | chr11:75173934 | ENST00000418153 | - | 8 | 18 | 4_108 | 233.0 | 681.0 | Compositional bias | Note=Gln-rich |
Tgene | GDPD5 | chr11:45991366 | chr11:75173934 | ENST00000336898 | 2 | 17 | 228_485 | 39.0 | 606.0 | Domain | Note=GP-PDE | |
Tgene | GDPD5 | chr11:45991366 | chr11:75173934 | ENST00000376282 | 0 | 13 | 228_485 | 0 | 487.0 | Domain | Note=GP-PDE | |
Tgene | GDPD5 | chr11:45991366 | chr11:75173934 | ENST00000526177 | 0 | 13 | 228_485 | 0 | 468.0 | Domain | Note=GP-PDE | |
Tgene | GDPD5 | chr11:45991366 | chr11:75173934 | ENST00000529721 | 3 | 18 | 228_485 | 39.0 | 606.0 | Domain | Note=GP-PDE | |
Tgene | GDPD5 | chr11:45991366 | chr11:75173934 | ENST00000533784 | 0 | 12 | 228_485 | 0 | 487.0 | Domain | Note=GP-PDE | |
Tgene | GDPD5 | chr11:45991366 | chr11:75173934 | ENST00000533805 | 0 | 12 | 228_485 | 0 | 361.0 | Domain | Note=GP-PDE | |
Tgene | GDPD5 | chr11:45991366 | chr11:75173934 | ENST00000336898 | 2 | 17 | 111_125 | 39.0 | 606.0 | Topological domain | Cytoplasmic | |
Tgene | GDPD5 | chr11:45991366 | chr11:75173934 | ENST00000336898 | 2 | 17 | 147_160 | 39.0 | 606.0 | Topological domain | Extracellular | |
Tgene | GDPD5 | chr11:45991366 | chr11:75173934 | ENST00000336898 | 2 | 17 | 182_192 | 39.0 | 606.0 | Topological domain | Cytoplasmic | |
Tgene | GDPD5 | chr11:45991366 | chr11:75173934 | ENST00000336898 | 2 | 17 | 214_496 | 39.0 | 606.0 | Topological domain | Extracellular | |
Tgene | GDPD5 | chr11:45991366 | chr11:75173934 | ENST00000336898 | 2 | 17 | 518_605 | 39.0 | 606.0 | Topological domain | Cytoplasmic | |
Tgene | GDPD5 | chr11:45991366 | chr11:75173934 | ENST00000336898 | 2 | 17 | 64_89 | 39.0 | 606.0 | Topological domain | Extracellular | |
Tgene | GDPD5 | chr11:45991366 | chr11:75173934 | ENST00000376282 | 0 | 13 | 111_125 | 0 | 487.0 | Topological domain | Cytoplasmic | |
Tgene | GDPD5 | chr11:45991366 | chr11:75173934 | ENST00000376282 | 0 | 13 | 147_160 | 0 | 487.0 | Topological domain | Extracellular | |
Tgene | GDPD5 | chr11:45991366 | chr11:75173934 | ENST00000376282 | 0 | 13 | 182_192 | 0 | 487.0 | Topological domain | Cytoplasmic | |
Tgene | GDPD5 | chr11:45991366 | chr11:75173934 | ENST00000376282 | 0 | 13 | 1_42 | 0 | 487.0 | Topological domain | Cytoplasmic | |
Tgene | GDPD5 | chr11:45991366 | chr11:75173934 | ENST00000376282 | 0 | 13 | 214_496 | 0 | 487.0 | Topological domain | Extracellular | |
Tgene | GDPD5 | chr11:45991366 | chr11:75173934 | ENST00000376282 | 0 | 13 | 518_605 | 0 | 487.0 | Topological domain | Cytoplasmic | |
Tgene | GDPD5 | chr11:45991366 | chr11:75173934 | ENST00000376282 | 0 | 13 | 64_89 | 0 | 487.0 | Topological domain | Extracellular | |
Tgene | GDPD5 | chr11:45991366 | chr11:75173934 | ENST00000526177 | 0 | 13 | 111_125 | 0 | 468.0 | Topological domain | Cytoplasmic | |
Tgene | GDPD5 | chr11:45991366 | chr11:75173934 | ENST00000526177 | 0 | 13 | 147_160 | 0 | 468.0 | Topological domain | Extracellular | |
Tgene | GDPD5 | chr11:45991366 | chr11:75173934 | ENST00000526177 | 0 | 13 | 182_192 | 0 | 468.0 | Topological domain | Cytoplasmic | |
Tgene | GDPD5 | chr11:45991366 | chr11:75173934 | ENST00000526177 | 0 | 13 | 1_42 | 0 | 468.0 | Topological domain | Cytoplasmic | |
Tgene | GDPD5 | chr11:45991366 | chr11:75173934 | ENST00000526177 | 0 | 13 | 214_496 | 0 | 468.0 | Topological domain | Extracellular | |
Tgene | GDPD5 | chr11:45991366 | chr11:75173934 | ENST00000526177 | 0 | 13 | 518_605 | 0 | 468.0 | Topological domain | Cytoplasmic | |
Tgene | GDPD5 | chr11:45991366 | chr11:75173934 | ENST00000526177 | 0 | 13 | 64_89 | 0 | 468.0 | Topological domain | Extracellular | |
Tgene | GDPD5 | chr11:45991366 | chr11:75173934 | ENST00000529721 | 3 | 18 | 111_125 | 39.0 | 606.0 | Topological domain | Cytoplasmic | |
Tgene | GDPD5 | chr11:45991366 | chr11:75173934 | ENST00000529721 | 3 | 18 | 147_160 | 39.0 | 606.0 | Topological domain | Extracellular | |
Tgene | GDPD5 | chr11:45991366 | chr11:75173934 | ENST00000529721 | 3 | 18 | 182_192 | 39.0 | 606.0 | Topological domain | Cytoplasmic | |
Tgene | GDPD5 | chr11:45991366 | chr11:75173934 | ENST00000529721 | 3 | 18 | 214_496 | 39.0 | 606.0 | Topological domain | Extracellular | |
Tgene | GDPD5 | chr11:45991366 | chr11:75173934 | ENST00000529721 | 3 | 18 | 518_605 | 39.0 | 606.0 | Topological domain | Cytoplasmic | |
Tgene | GDPD5 | chr11:45991366 | chr11:75173934 | ENST00000529721 | 3 | 18 | 64_89 | 39.0 | 606.0 | Topological domain | Extracellular | |
Tgene | GDPD5 | chr11:45991366 | chr11:75173934 | ENST00000533784 | 0 | 12 | 111_125 | 0 | 487.0 | Topological domain | Cytoplasmic | |
Tgene | GDPD5 | chr11:45991366 | chr11:75173934 | ENST00000533784 | 0 | 12 | 147_160 | 0 | 487.0 | Topological domain | Extracellular | |
Tgene | GDPD5 | chr11:45991366 | chr11:75173934 | ENST00000533784 | 0 | 12 | 182_192 | 0 | 487.0 | Topological domain | Cytoplasmic | |
Tgene | GDPD5 | chr11:45991366 | chr11:75173934 | ENST00000533784 | 0 | 12 | 1_42 | 0 | 487.0 | Topological domain | Cytoplasmic | |
Tgene | GDPD5 | chr11:45991366 | chr11:75173934 | ENST00000533784 | 0 | 12 | 214_496 | 0 | 487.0 | Topological domain | Extracellular | |
Tgene | GDPD5 | chr11:45991366 | chr11:75173934 | ENST00000533784 | 0 | 12 | 518_605 | 0 | 487.0 | Topological domain | Cytoplasmic | |
Tgene | GDPD5 | chr11:45991366 | chr11:75173934 | ENST00000533784 | 0 | 12 | 64_89 | 0 | 487.0 | Topological domain | Extracellular | |
Tgene | GDPD5 | chr11:45991366 | chr11:75173934 | ENST00000533805 | 0 | 12 | 111_125 | 0 | 361.0 | Topological domain | Cytoplasmic | |
Tgene | GDPD5 | chr11:45991366 | chr11:75173934 | ENST00000533805 | 0 | 12 | 147_160 | 0 | 361.0 | Topological domain | Extracellular | |
Tgene | GDPD5 | chr11:45991366 | chr11:75173934 | ENST00000533805 | 0 | 12 | 182_192 | 0 | 361.0 | Topological domain | Cytoplasmic | |
Tgene | GDPD5 | chr11:45991366 | chr11:75173934 | ENST00000533805 | 0 | 12 | 1_42 | 0 | 361.0 | Topological domain | Cytoplasmic | |
Tgene | GDPD5 | chr11:45991366 | chr11:75173934 | ENST00000533805 | 0 | 12 | 214_496 | 0 | 361.0 | Topological domain | Extracellular | |
Tgene | GDPD5 | chr11:45991366 | chr11:75173934 | ENST00000533805 | 0 | 12 | 518_605 | 0 | 361.0 | Topological domain | Cytoplasmic | |
Tgene | GDPD5 | chr11:45991366 | chr11:75173934 | ENST00000533805 | 0 | 12 | 64_89 | 0 | 361.0 | Topological domain | Extracellular | |
Tgene | GDPD5 | chr11:45991366 | chr11:75173934 | ENST00000336898 | 2 | 17 | 126_146 | 39.0 | 606.0 | Transmembrane | Helical | |
Tgene | GDPD5 | chr11:45991366 | chr11:75173934 | ENST00000336898 | 2 | 17 | 161_181 | 39.0 | 606.0 | Transmembrane | Helical | |
Tgene | GDPD5 | chr11:45991366 | chr11:75173934 | ENST00000336898 | 2 | 17 | 193_213 | 39.0 | 606.0 | Transmembrane | Helical | |
Tgene | GDPD5 | chr11:45991366 | chr11:75173934 | ENST00000336898 | 2 | 17 | 43_63 | 39.0 | 606.0 | Transmembrane | Helical | |
Tgene | GDPD5 | chr11:45991366 | chr11:75173934 | ENST00000336898 | 2 | 17 | 497_517 | 39.0 | 606.0 | Transmembrane | Helical | |
Tgene | GDPD5 | chr11:45991366 | chr11:75173934 | ENST00000336898 | 2 | 17 | 90_110 | 39.0 | 606.0 | Transmembrane | Helical | |
Tgene | GDPD5 | chr11:45991366 | chr11:75173934 | ENST00000376282 | 0 | 13 | 126_146 | 0 | 487.0 | Transmembrane | Helical | |
Tgene | GDPD5 | chr11:45991366 | chr11:75173934 | ENST00000376282 | 0 | 13 | 161_181 | 0 | 487.0 | Transmembrane | Helical | |
Tgene | GDPD5 | chr11:45991366 | chr11:75173934 | ENST00000376282 | 0 | 13 | 193_213 | 0 | 487.0 | Transmembrane | Helical | |
Tgene | GDPD5 | chr11:45991366 | chr11:75173934 | ENST00000376282 | 0 | 13 | 43_63 | 0 | 487.0 | Transmembrane | Helical | |
Tgene | GDPD5 | chr11:45991366 | chr11:75173934 | ENST00000376282 | 0 | 13 | 497_517 | 0 | 487.0 | Transmembrane | Helical | |
Tgene | GDPD5 | chr11:45991366 | chr11:75173934 | ENST00000376282 | 0 | 13 | 90_110 | 0 | 487.0 | Transmembrane | Helical | |
Tgene | GDPD5 | chr11:45991366 | chr11:75173934 | ENST00000526177 | 0 | 13 | 126_146 | 0 | 468.0 | Transmembrane | Helical | |
Tgene | GDPD5 | chr11:45991366 | chr11:75173934 | ENST00000526177 | 0 | 13 | 161_181 | 0 | 468.0 | Transmembrane | Helical | |
Tgene | GDPD5 | chr11:45991366 | chr11:75173934 | ENST00000526177 | 0 | 13 | 193_213 | 0 | 468.0 | Transmembrane | Helical | |
Tgene | GDPD5 | chr11:45991366 | chr11:75173934 | ENST00000526177 | 0 | 13 | 43_63 | 0 | 468.0 | Transmembrane | Helical | |
Tgene | GDPD5 | chr11:45991366 | chr11:75173934 | ENST00000526177 | 0 | 13 | 497_517 | 0 | 468.0 | Transmembrane | Helical | |
Tgene | GDPD5 | chr11:45991366 | chr11:75173934 | ENST00000526177 | 0 | 13 | 90_110 | 0 | 468.0 | Transmembrane | Helical | |
Tgene | GDPD5 | chr11:45991366 | chr11:75173934 | ENST00000529721 | 3 | 18 | 126_146 | 39.0 | 606.0 | Transmembrane | Helical | |
Tgene | GDPD5 | chr11:45991366 | chr11:75173934 | ENST00000529721 | 3 | 18 | 161_181 | 39.0 | 606.0 | Transmembrane | Helical | |
Tgene | GDPD5 | chr11:45991366 | chr11:75173934 | ENST00000529721 | 3 | 18 | 193_213 | 39.0 | 606.0 | Transmembrane | Helical | |
Tgene | GDPD5 | chr11:45991366 | chr11:75173934 | ENST00000529721 | 3 | 18 | 43_63 | 39.0 | 606.0 | Transmembrane | Helical | |
Tgene | GDPD5 | chr11:45991366 | chr11:75173934 | ENST00000529721 | 3 | 18 | 497_517 | 39.0 | 606.0 | Transmembrane | Helical | |
Tgene | GDPD5 | chr11:45991366 | chr11:75173934 | ENST00000529721 | 3 | 18 | 90_110 | 39.0 | 606.0 | Transmembrane | Helical | |
Tgene | GDPD5 | chr11:45991366 | chr11:75173934 | ENST00000533784 | 0 | 12 | 126_146 | 0 | 487.0 | Transmembrane | Helical | |
Tgene | GDPD5 | chr11:45991366 | chr11:75173934 | ENST00000533784 | 0 | 12 | 161_181 | 0 | 487.0 | Transmembrane | Helical | |
Tgene | GDPD5 | chr11:45991366 | chr11:75173934 | ENST00000533784 | 0 | 12 | 193_213 | 0 | 487.0 | Transmembrane | Helical | |
Tgene | GDPD5 | chr11:45991366 | chr11:75173934 | ENST00000533784 | 0 | 12 | 43_63 | 0 | 487.0 | Transmembrane | Helical | |
Tgene | GDPD5 | chr11:45991366 | chr11:75173934 | ENST00000533784 | 0 | 12 | 497_517 | 0 | 487.0 | Transmembrane | Helical | |
Tgene | GDPD5 | chr11:45991366 | chr11:75173934 | ENST00000533784 | 0 | 12 | 90_110 | 0 | 487.0 | Transmembrane | Helical | |
Tgene | GDPD5 | chr11:45991366 | chr11:75173934 | ENST00000533805 | 0 | 12 | 126_146 | 0 | 361.0 | Transmembrane | Helical | |
Tgene | GDPD5 | chr11:45991366 | chr11:75173934 | ENST00000533805 | 0 | 12 | 161_181 | 0 | 361.0 | Transmembrane | Helical | |
Tgene | GDPD5 | chr11:45991366 | chr11:75173934 | ENST00000533805 | 0 | 12 | 193_213 | 0 | 361.0 | Transmembrane | Helical | |
Tgene | GDPD5 | chr11:45991366 | chr11:75173934 | ENST00000533805 | 0 | 12 | 43_63 | 0 | 361.0 | Transmembrane | Helical | |
Tgene | GDPD5 | chr11:45991366 | chr11:75173934 | ENST00000533805 | 0 | 12 | 497_517 | 0 | 361.0 | Transmembrane | Helical | |
Tgene | GDPD5 | chr11:45991366 | chr11:75173934 | ENST00000533805 | 0 | 12 | 90_110 | 0 | 361.0 | Transmembrane | Helical |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | PHF21A | chr11:45991366 | chr11:75173934 | ENST00000257821 | - | 8 | 18 | 558_603 | 234.0 | 682.0 | Coiled coil | Ontology_term=ECO:0000255 |
Hgene | PHF21A | chr11:45991366 | chr11:75173934 | ENST00000323180 | - | 8 | 18 | 558_603 | 234.0 | 635.0 | Coiled coil | Ontology_term=ECO:0000255 |
Hgene | PHF21A | chr11:45991366 | chr11:75173934 | ENST00000418153 | - | 8 | 18 | 558_603 | 233.0 | 681.0 | Coiled coil | Ontology_term=ECO:0000255 |
Hgene | PHF21A | chr11:45991366 | chr11:75173934 | ENST00000257821 | - | 8 | 18 | 425_437 | 234.0 | 682.0 | DNA binding | Note=A.T hook |
Hgene | PHF21A | chr11:45991366 | chr11:75173934 | ENST00000323180 | - | 8 | 18 | 425_437 | 234.0 | 635.0 | DNA binding | Note=A.T hook |
Hgene | PHF21A | chr11:45991366 | chr11:75173934 | ENST00000418153 | - | 8 | 18 | 425_437 | 233.0 | 681.0 | DNA binding | Note=A.T hook |
Hgene | PHF21A | chr11:45991366 | chr11:75173934 | ENST00000257821 | - | 8 | 18 | 486_680 | 234.0 | 682.0 | Region | Note=Required for transcriptional repression |
Hgene | PHF21A | chr11:45991366 | chr11:75173934 | ENST00000323180 | - | 8 | 18 | 486_680 | 234.0 | 635.0 | Region | Note=Required for transcriptional repression |
Hgene | PHF21A | chr11:45991366 | chr11:75173934 | ENST00000418153 | - | 8 | 18 | 486_680 | 233.0 | 681.0 | Region | Note=Required for transcriptional repression |
Hgene | PHF21A | chr11:45991366 | chr11:75173934 | ENST00000257821 | - | 8 | 18 | 488_535 | 234.0 | 682.0 | Zinc finger | PHD-type |
Hgene | PHF21A | chr11:45991366 | chr11:75173934 | ENST00000323180 | - | 8 | 18 | 488_535 | 234.0 | 635.0 | Zinc finger | PHD-type |
Hgene | PHF21A | chr11:45991366 | chr11:75173934 | ENST00000418153 | - | 8 | 18 | 488_535 | 233.0 | 681.0 | Zinc finger | PHD-type |
Tgene | GDPD5 | chr11:45991366 | chr11:75173934 | ENST00000336898 | 2 | 17 | 1_42 | 39.0 | 606.0 | Topological domain | Cytoplasmic | |
Tgene | GDPD5 | chr11:45991366 | chr11:75173934 | ENST00000529721 | 3 | 18 | 1_42 | 39.0 | 606.0 | Topological domain | Cytoplasmic |
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Fusion Gene Sequence for PHF21A-GDPD5 |
For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones. |
>In-frame_ENST00000257821_ENST00000336898_TCGA-N6-A4VF_PHF21A_chr11_45991366_-_GDPD5_chr11_75173934_length(transcript)=3894nt_BP=1326nt GGTGAATGGGCTGGTGGTGCTCGCTGCTGCTGCTGAGAGGAGGAGGAGGATGAAGAGTTGGGCTTGTTTGTCTCCTACAGTTTCTCTCCT GCTGCTCTGATTCCCCCCTCCCGATTCCGGCCCGGGGCCTGTGTGTGTCCCTCCTGGAGGAGGAGGAGGATCCAGTTCCTCCCCCCAACC CCCTCCTCCCCACCCCCCCTTGCCTGGGGAAGAGGAGGAAAGAAACAGCCCAGAGAGAGAGAGAGAGAGAGAGTGAGTGAGAGAGAGAGG AGAGGAGAGGAGGAGGAGGAGGAGGGAGAAGGGAACAACCTACCATCTTAACACACTAATATCTAAAAAGTGCGAGAGGCCCAGAGCAGC AGCAGAAGCAGCAGCAGCAGCTCCAGCTTCTTCCCTCCCTCCCCATGAAGAAGAGTTCCCTCCTCCTCCTCCTCCTGCTTCTCCTGCTCA GAGTTCCTGCCTCCAGCTGCCAGGGGGGACAGCCAGCCAGCAGCAGGAGGGGGGCTAGAGAGCTGAAGGAGAGCCAGTTTCCCCAAAATT GCTGCAGTGAGAAGAGGAGTTTGTTACTTTAAACAGAGGCTGAAGAAACTATAGAATTAGCAGAGAAAGTGGAGAAGGTAGAGGATGGAG TTGCAGACTCTACAGGAGGCTCTTAAAGTGGAAATTCAGGTTCACCAGAAACTGGTTGCTCAAATGAAGCAGGATCCACAGAATGCTGAC TTAAAGAAACAGCTTCATGAACTCCAAGCCAAAATCACAGCTTTGAGTGAGAAACAGAAAAGAGTAGTTGAACAGCTACGGAAGAACCTG ATAGTAAAGCAAGAACAACCGGACAAGTTCCAAATACAGCCATTGCCACAATCTGAAAACAAACTACAAACAGCACAGCAGCAACCACTA CAGCAACTACAACAACAGCAGCAGTACCACCACCACCACGCCCAGCAGTCAGCTGCAGCCTCTCCCAACCTGACTGCTTCACAGAAGACT GTAACTACAGCTTCTATGATTACCACAAAGACACTACCTCTCGTCTTGAAAGCAGCAACTGCGACCATGCCTGCCTCTGTGGTGGGCCAG AGACCTACCATTGCTATGGTGACCGCCATCAACAGTCAGAAGGCTGTGCTCAGCACTGATGTGCAGAACACACCAGTCAACCTCCAGACG TCTAGTAAGGTCACTGGGCCTGGGGCAGAGGCTGTCCAAATTGTGGCAAAAAACACAGTCACTCTGCAGGTTCAGGCAACACCTCCTCAG CCCATCAAAGTACCACAGTTTATCCCCCCTCCTAGACTCACTCCACGTCCAAACTTTCTTCCACAGTGGGAGCGCCTCTGGTTCCTGCTC CTCACCTTCACCTTTGGCCTCACGCTCACCTGGCTTTACTTCTGGTGGGAAGTCCACAATGACTATGATGAATTCAACTGGTACCTCTAC AACCGCATGGGCTACTGGAGCGACTGGCCCGTACCCATCCTTGTGACCACAGCTGCTGCCTTCGCATACATCGCTGGCCTCCTGGTCCTG GCACTATGTCACATTGCCGTGGGGCAGCAGATGAACCTGCACTGGCTGCACAAGATCGGGCTGGTGGTCATCCTGGCTTCCACGGTGGTG GCCATGTCGGCCGTGGCCCAGCTGTGGGAGGACGAGTGGGAGGTGCTGCTGATCTCCCTGCAGGGCACAGCGCCATTCCTGCATGTGGGG GCTGTGGCAGCAGTCACCATGCTCTCCTGGATCGTGGCAGGACAGTTCGCCCGCGCAGAGCGGACCTCCTCCCAGGTGACCATTCTCTGT ACCTTCTTCACCGTGGTGTTTGCCCTCTACCTGGCCCCTCTCACCATCTCCTCTCCCTGCATCATGGAGAAGAAAGACCTCGGCCCCAAG CCTGCTCTCATTGGCCACCGCGGGGCCCCCATGCTGGCTCCAGAGCACACGCTCATGTCCTTCCGGAAGGCCCTCGAGCAGAAGCTGTAC GGGCTCCAGGCTGACATTACCATCAGCCTGGACGGCGTGCCCTTCCTCATGCATGACACCACCCTGCGGCGCACCACCAACGTGGAGGAG GAGTTCCCGGAGCTGGCCCGCAGGCCTGCCTCCATGCTTAACTGGACCACCCTGCAGAGACTCAACGCTGGCCAGTGGTTCCTGAAGACT GACCCCTTCTGGACAGCCAGCTCCCTGTCACCCTCCGACCACAGAGAGGCCCAGAACCAGTCCATCTGCAGCCTGGCAGAGCTCCTGGAG CTGGCCAAGGGCAATGCCACACTGCTGCTCAACCTGCGTGACCCGCCCCGGGAGCACCCCTACCGCAGCAGTTTTATCAACGTGACTCTG GAGGCCGTGCTGCACTCCGGCTTCCCCCAGCACCAGGTCATGTGGCTGCCTAGCAGGCAGAGGCCCCTGGTGCGGAAGGTGGCTCCCGGC TTCCAACAGACATCAGGCTCCAAGGAGGCAGTCGCCAGCCTGCGGAGAGGCCACATCCAGCGGCTGAACCTGCGCTACACTCAGGTGTCC CGCCAGGAGCTCAGGGACTACGCGTCCTGGAACCTGAGTGTGAACCTCTACACAGTCAACGCACCGTGGCTCTTCTCCCTGCTGTGGTGT GCGGGGGTCCCATCCGTCACCTCTGACAACTCCCACGCCCTGTCCCAGGTGCCTTCCCCCCTCTGGATCATGCCCCCGGACGAGTACTGT CTCATGTGGGTCACTGCCGACCTGGTCTCCTTCACCCTCATCGTGGGCATCTTCGTGCTCCAGAAGTGGCGCCTGGGTGGCATACGGAGC TACAACCCTGAGCAGATCATGCTGAGTGCTGCGGTGCGCCGGACCAGCCGGGACGTCAGCATCATGAAGGAGAAGCTTATTTTCTCAGAG ATCAGCGATGGTGTAGAGGTCTCCGATGTGCTCTCCGTATGTTCAGACAACAGTTATGACACATATGCCAACAGCACCGCCACCCCTGTG GGCCCCCGAGGGGGTGGCAGCCACACCAAGACCCTCATAGAGCGGAGTGGGCGTTAGCTGAAGACATGTCTGTCCCACCTGTACCTGACA CAGAAGCTGGGGAGCCTAGGAGAGCTGGTGGAAGTGTGTCTGAACTCGGAGTGCTCTGGGAGCGGGCTCCACAGCCTCCTTGTGGGCTCC AGCCCCTTGTCAGCCGCAGCCTCTCTTGAGGGGGACTCCCTGTCTCCTGAGGCCCAGCTGGGCCAGGACTCCATCCTTTCAGATGCCCCT GCAGGCCTGGGGCTCCTTCTGGGAAGTATGGGGCCTAGGGCTTGGTCCCCCTCTTCTGAGGCCCTCTCCTGTATCCCGACCTGGAAGCTT TGATGGGTCATGGGCCATGCCATACCCCCTGTGGCAATGGAGTGTGTGGATGCTCACCTGTGCCATCTGTCCTCCTGTCTGTGCCAGGAG GCACCTGAGTTCTCTGCTGTTATCCTGCCCCAAGGGCCTGGGCCGAGCCTCTACCTGAAGCAACTCTGCTCTTCCTGTCAGTCTCAAAGC ACAAGGAGGTTCAGCCCAGGAGGAAGCCAGCTGCAATGTGGAGACACGTCCTCCTCCCCAACCCACCTCATGCCACCGCCAACCCCCTGC CCCAGGAGCGGGCCTGAGCCACGTCCTCTAGGAGCAGCTGGAGATGGCCAAAAGAGTGAGCTCAGGACTACTGGATCCCATGCCCAGGTG TCCAGCAGACCTCAAGGCAGAAGGGTCACCTAACCCAGGAGTCCACAGACTGATGTGACCTCAGGTTCCCACATCAGTGGCCACAGGGCA GGGCCCACCTGGTAGAAGTGTTCTGGATATGGCCAGGGTGGGTGTGTGGCTAAGTGGGCCTGAACAGAGGGAACCTAGGGCCCTTGGCCA >In-frame_ENST00000257821_ENST00000336898_TCGA-N6-A4VF_PHF21A_chr11_45991366_-_GDPD5_chr11_75173934_length(amino acids)=800AA_start in transcript=624_stop in transcript=3026 MELQTLQEALKVEIQVHQKLVAQMKQDPQNADLKKQLHELQAKITALSEKQKRVVEQLRKNLIVKQEQPDKFQIQPLPQSENKLQTAQQQ PLQQLQQQQQYHHHHAQQSAAASPNLTASQKTVTTASMITTKTLPLVLKAATATMPASVVGQRPTIAMVTAINSQKAVLSTDVQNTPVNL QTSSKVTGPGAEAVQIVAKNTVTLQVQATPPQPIKVPQFIPPPRLTPRPNFLPQWERLWFLLLTFTFGLTLTWLYFWWEVHNDYDEFNWY LYNRMGYWSDWPVPILVTTAAAFAYIAGLLVLALCHIAVGQQMNLHWLHKIGLVVILASTVVAMSAVAQLWEDEWEVLLISLQGTAPFLH VGAVAAVTMLSWIVAGQFARAERTSSQVTILCTFFTVVFALYLAPLTISSPCIMEKKDLGPKPALIGHRGAPMLAPEHTLMSFRKALEQK LYGLQADITISLDGVPFLMHDTTLRRTTNVEEEFPELARRPASMLNWTTLQRLNAGQWFLKTDPFWTASSLSPSDHREAQNQSICSLAEL LELAKGNATLLLNLRDPPREHPYRSSFINVTLEAVLHSGFPQHQVMWLPSRQRPLVRKVAPGFQQTSGSKEAVASLRRGHIQRLNLRYTQ VSRQELRDYASWNLSVNLYTVNAPWLFSLLWCAGVPSVTSDNSHALSQVPSPLWIMPPDEYCLMWVTADLVSFTLIVGIFVLQKWRLGGI -------------------------------------------------------------- >In-frame_ENST00000323180_ENST00000336898_TCGA-N6-A4VF_PHF21A_chr11_45991366_-_GDPD5_chr11_75173934_length(transcript)=3638nt_BP=1070nt GTGAGAGAGAGAGGAGAGGAGAGGAGGAGGAGGAGGAGGGAGAAGGGAACAACCTACCATCTTAACACACTAATATCTAAAAAGTGCGAG AGGCCCAGAGCAGCAGCAGAAGCAGCAGCAGCAGCTCCAGCTTCTTCCCTCCCTCCCCATGAAGAAGAGTTCCCTCCTCCTCCTCCTCCT GCTTCTCCTGCTCAGAGTTCCTGCCTCCAGCTGCCAGGGGGGACAGCCAGCCAGCAGCAGGAGGGGGGCTAGAGAGCTGAAGGAGAGCCA GTTTCCCCAAAATTGCTGCAGTGAGAAGAGGAGTTTGTTACTTTAAACAGAGGCTGAAGAAACTATAGAATTAGCAGAGAAAGTGGAGAA GGTAGAGGATGGAGTTGCAGACTCTACAGGAGGCTCTTAAAGTGGAAATTCAGGTTCACCAGAAACTGGTTGCTCAAATGAAGCAGGATC CACAGAATGCTGACTTAAAGAAACAGCTTCATGAACTCCAAGCCAAAATCACAGCTTTGAGTGAGAAACAGAAAAGAGTAGTTGAACAGC TACGGAAGAACCTGATAGTAAAGCAAGAACAACCGGACAAGTTCCAAATACAGCCATTGCCACAATCTGAAAACAAACTACAAACAGCAC AGCAGCAACCACTACAGCAACTACAACAACAGCAGCAGTACCACCACCACCACGCCCAGCAGTCAGCTGCAGCCTCTCCCAACCTGACTG CTTCACAGAAGACTGTAACTACAGCTTCTATGATTACCACAAAGACACTACCTCTCGTCTTGAAAGCAGCAACTGCGACCATGCCTGCCT CTGTGGTGGGCCAGAGACCTACCATTGCTATGGTGACCGCCATCAACAGTCAGAAGGCTGTGCTCAGCACTGATGTGCAGAACACACCAG TCAACCTCCAGACGTCTAGTAAGGTCACTGGGCCTGGGGCAGAGGCTGTCCAAATTGTGGCAAAAAACACAGTCACTCTGCAGGTTCAGG CAACACCTCCTCAGCCCATCAAAGTACCACAGTTTATCCCCCCTCCTAGACTCACTCCACGTCCAAACTTTCTTCCACAGTGGGAGCGCC TCTGGTTCCTGCTCCTCACCTTCACCTTTGGCCTCACGCTCACCTGGCTTTACTTCTGGTGGGAAGTCCACAATGACTATGATGAATTCA ACTGGTACCTCTACAACCGCATGGGCTACTGGAGCGACTGGCCCGTACCCATCCTTGTGACCACAGCTGCTGCCTTCGCATACATCGCTG GCCTCCTGGTCCTGGCACTATGTCACATTGCCGTGGGGCAGCAGATGAACCTGCACTGGCTGCACAAGATCGGGCTGGTGGTCATCCTGG CTTCCACGGTGGTGGCCATGTCGGCCGTGGCCCAGCTGTGGGAGGACGAGTGGGAGGTGCTGCTGATCTCCCTGCAGGGCACAGCGCCAT TCCTGCATGTGGGGGCTGTGGCAGCAGTCACCATGCTCTCCTGGATCGTGGCAGGACAGTTCGCCCGCGCAGAGCGGACCTCCTCCCAGG TGACCATTCTCTGTACCTTCTTCACCGTGGTGTTTGCCCTCTACCTGGCCCCTCTCACCATCTCCTCTCCCTGCATCATGGAGAAGAAAG ACCTCGGCCCCAAGCCTGCTCTCATTGGCCACCGCGGGGCCCCCATGCTGGCTCCAGAGCACACGCTCATGTCCTTCCGGAAGGCCCTCG AGCAGAAGCTGTACGGGCTCCAGGCTGACATTACCATCAGCCTGGACGGCGTGCCCTTCCTCATGCATGACACCACCCTGCGGCGCACCA CCAACGTGGAGGAGGAGTTCCCGGAGCTGGCCCGCAGGCCTGCCTCCATGCTTAACTGGACCACCCTGCAGAGACTCAACGCTGGCCAGT GGTTCCTGAAGACTGACCCCTTCTGGACAGCCAGCTCCCTGTCACCCTCCGACCACAGAGAGGCCCAGAACCAGTCCATCTGCAGCCTGG CAGAGCTCCTGGAGCTGGCCAAGGGCAATGCCACACTGCTGCTCAACCTGCGTGACCCGCCCCGGGAGCACCCCTACCGCAGCAGTTTTA TCAACGTGACTCTGGAGGCCGTGCTGCACTCCGGCTTCCCCCAGCACCAGGTCATGTGGCTGCCTAGCAGGCAGAGGCCCCTGGTGCGGA AGGTGGCTCCCGGCTTCCAACAGACATCAGGCTCCAAGGAGGCAGTCGCCAGCCTGCGGAGAGGCCACATCCAGCGGCTGAACCTGCGCT ACACTCAGGTGTCCCGCCAGGAGCTCAGGGACTACGCGTCCTGGAACCTGAGTGTGAACCTCTACACAGTCAACGCACCGTGGCTCTTCT CCCTGCTGTGGTGTGCGGGGGTCCCATCCGTCACCTCTGACAACTCCCACGCCCTGTCCCAGGTGCCTTCCCCCCTCTGGATCATGCCCC CGGACGAGTACTGTCTCATGTGGGTCACTGCCGACCTGGTCTCCTTCACCCTCATCGTGGGCATCTTCGTGCTCCAGAAGTGGCGCCTGG GTGGCATACGGAGCTACAACCCTGAGCAGATCATGCTGAGTGCTGCGGTGCGCCGGACCAGCCGGGACGTCAGCATCATGAAGGAGAAGC TTATTTTCTCAGAGATCAGCGATGGTGTAGAGGTCTCCGATGTGCTCTCCGTATGTTCAGACAACAGTTATGACACATATGCCAACAGCA CCGCCACCCCTGTGGGCCCCCGAGGGGGTGGCAGCCACACCAAGACCCTCATAGAGCGGAGTGGGCGTTAGCTGAAGACATGTCTGTCCC ACCTGTACCTGACACAGAAGCTGGGGAGCCTAGGAGAGCTGGTGGAAGTGTGTCTGAACTCGGAGTGCTCTGGGAGCGGGCTCCACAGCC TCCTTGTGGGCTCCAGCCCCTTGTCAGCCGCAGCCTCTCTTGAGGGGGACTCCCTGTCTCCTGAGGCCCAGCTGGGCCAGGACTCCATCC TTTCAGATGCCCCTGCAGGCCTGGGGCTCCTTCTGGGAAGTATGGGGCCTAGGGCTTGGTCCCCCTCTTCTGAGGCCCTCTCCTGTATCC CGACCTGGAAGCTTTGATGGGTCATGGGCCATGCCATACCCCCTGTGGCAATGGAGTGTGTGGATGCTCACCTGTGCCATCTGTCCTCCT GTCTGTGCCAGGAGGCACCTGAGTTCTCTGCTGTTATCCTGCCCCAAGGGCCTGGGCCGAGCCTCTACCTGAAGCAACTCTGCTCTTCCT GTCAGTCTCAAAGCACAAGGAGGTTCAGCCCAGGAGGAAGCCAGCTGCAATGTGGAGACACGTCCTCCTCCCCAACCCACCTCATGCCAC CGCCAACCCCCTGCCCCAGGAGCGGGCCTGAGCCACGTCCTCTAGGAGCAGCTGGAGATGGCCAAAAGAGTGAGCTCAGGACTACTGGAT CCCATGCCCAGGTGTCCAGCAGACCTCAAGGCAGAAGGGTCACCTAACCCAGGAGTCCACAGACTGATGTGACCTCAGGTTCCCACATCA GTGGCCACAGGGCAGGGCCCACCTGGTAGAAGTGTTCTGGATATGGCCAGGGTGGGTGTGTGGCTAAGTGGGCCTGAACAGAGGGAACCT >In-frame_ENST00000323180_ENST00000336898_TCGA-N6-A4VF_PHF21A_chr11_45991366_-_GDPD5_chr11_75173934_length(amino acids)=800AA_start in transcript=368_stop in transcript=2770 MELQTLQEALKVEIQVHQKLVAQMKQDPQNADLKKQLHELQAKITALSEKQKRVVEQLRKNLIVKQEQPDKFQIQPLPQSENKLQTAQQQ PLQQLQQQQQYHHHHAQQSAAASPNLTASQKTVTTASMITTKTLPLVLKAATATMPASVVGQRPTIAMVTAINSQKAVLSTDVQNTPVNL QTSSKVTGPGAEAVQIVAKNTVTLQVQATPPQPIKVPQFIPPPRLTPRPNFLPQWERLWFLLLTFTFGLTLTWLYFWWEVHNDYDEFNWY LYNRMGYWSDWPVPILVTTAAAFAYIAGLLVLALCHIAVGQQMNLHWLHKIGLVVILASTVVAMSAVAQLWEDEWEVLLISLQGTAPFLH VGAVAAVTMLSWIVAGQFARAERTSSQVTILCTFFTVVFALYLAPLTISSPCIMEKKDLGPKPALIGHRGAPMLAPEHTLMSFRKALEQK LYGLQADITISLDGVPFLMHDTTLRRTTNVEEEFPELARRPASMLNWTTLQRLNAGQWFLKTDPFWTASSLSPSDHREAQNQSICSLAEL LELAKGNATLLLNLRDPPREHPYRSSFINVTLEAVLHSGFPQHQVMWLPSRQRPLVRKVAPGFQQTSGSKEAVASLRRGHIQRLNLRYTQ VSRQELRDYASWNLSVNLYTVNAPWLFSLLWCAGVPSVTSDNSHALSQVPSPLWIMPPDEYCLMWVTADLVSFTLIVGIFVLQKWRLGGI -------------------------------------------------------------- >In-frame_ENST00000418153_ENST00000336898_TCGA-N6-A4VF_PHF21A_chr11_45991366_-_GDPD5_chr11_75173934_length(transcript)=3467nt_BP=899nt CCTCCTCCTCCTGCTTCTCCTGCTCAGAGTTCCTGCCTCCAGCTGCCAGGGGGGACAGCCAGCCAGCAGCAGGAGGGGGGCTAGAGAGCT GAAGGAGAGCCAGTTTCCCCAAAATTGCTGCAGTGAGAAGAGGAGTTTGTTACTTTAAACAGAGGCTGAAGAAACTATAGAATTAGCAGA GAAAGTGGAGAAGGTAGAGGATGGAGTTGCAGACTCTACAGGAGGCTCTTAAAGTGGAAATTCAGGTTCACCAGAAACTGGTTGCTCAAA TGAAGCAGGATCCACAGAATGCTGACTTAAAGAAACAGCTTCATGAACTCCAAGCCAAAATCACAGCTTTGAGTGAGAAACAGAAAAGAG TAGTTGAACAGCTACGGAAGAACCTGATAGTAAAGCAAGAACAACCGGACAAGTTCCAAATACAGCCATTGCCACAATCTGAAAACAAAC TACAAACAGCACAGCAGCAACCACTACAGCAACTACAACAACAGCAGCAGTACCACCACCACCACGCCCAGCAGTCAGCTGCAGCCTCTC CCAACCTGACTGCTTCACAGAAGACTGTAACTACAGCTTCTATGATTACCACAAAGACACTACCTCTCGTCTTGAAAGCAGCAACTGCGA CCATGCCTGCCTCTGTGGTGGGCCAGAGACCTACCATTGCTATGGTGACCGCCATCAACAGTCAGAAGGCTGTGCTCAGCACTGATGTGC AGAACACACCAGTCAACCTCCAGACGTCTAGTAAGGTCACTGGGCCTGGGGCAGAGGCTGTCCAAATTGTGGCAAAAAACACAGTCACTC TGGTTCAGGCAACACCTCCTCAGCCCATCAAAGTACCACAGTTTATCCCCCCTCCTAGACTCACTCCACGTCCAAACTTTCTTCCACAGT GGGAGCGCCTCTGGTTCCTGCTCCTCACCTTCACCTTTGGCCTCACGCTCACCTGGCTTTACTTCTGGTGGGAAGTCCACAATGACTATG ATGAATTCAACTGGTACCTCTACAACCGCATGGGCTACTGGAGCGACTGGCCCGTACCCATCCTTGTGACCACAGCTGCTGCCTTCGCAT ACATCGCTGGCCTCCTGGTCCTGGCACTATGTCACATTGCCGTGGGGCAGCAGATGAACCTGCACTGGCTGCACAAGATCGGGCTGGTGG TCATCCTGGCTTCCACGGTGGTGGCCATGTCGGCCGTGGCCCAGCTGTGGGAGGACGAGTGGGAGGTGCTGCTGATCTCCCTGCAGGGCA CAGCGCCATTCCTGCATGTGGGGGCTGTGGCAGCAGTCACCATGCTCTCCTGGATCGTGGCAGGACAGTTCGCCCGCGCAGAGCGGACCT CCTCCCAGGTGACCATTCTCTGTACCTTCTTCACCGTGGTGTTTGCCCTCTACCTGGCCCCTCTCACCATCTCCTCTCCCTGCATCATGG AGAAGAAAGACCTCGGCCCCAAGCCTGCTCTCATTGGCCACCGCGGGGCCCCCATGCTGGCTCCAGAGCACACGCTCATGTCCTTCCGGA AGGCCCTCGAGCAGAAGCTGTACGGGCTCCAGGCTGACATTACCATCAGCCTGGACGGCGTGCCCTTCCTCATGCATGACACCACCCTGC GGCGCACCACCAACGTGGAGGAGGAGTTCCCGGAGCTGGCCCGCAGGCCTGCCTCCATGCTTAACTGGACCACCCTGCAGAGACTCAACG CTGGCCAGTGGTTCCTGAAGACTGACCCCTTCTGGACAGCCAGCTCCCTGTCACCCTCCGACCACAGAGAGGCCCAGAACCAGTCCATCT GCAGCCTGGCAGAGCTCCTGGAGCTGGCCAAGGGCAATGCCACACTGCTGCTCAACCTGCGTGACCCGCCCCGGGAGCACCCCTACCGCA GCAGTTTTATCAACGTGACTCTGGAGGCCGTGCTGCACTCCGGCTTCCCCCAGCACCAGGTCATGTGGCTGCCTAGCAGGCAGAGGCCCC TGGTGCGGAAGGTGGCTCCCGGCTTCCAACAGACATCAGGCTCCAAGGAGGCAGTCGCCAGCCTGCGGAGAGGCCACATCCAGCGGCTGA ACCTGCGCTACACTCAGGTGTCCCGCCAGGAGCTCAGGGACTACGCGTCCTGGAACCTGAGTGTGAACCTCTACACAGTCAACGCACCGT GGCTCTTCTCCCTGCTGTGGTGTGCGGGGGTCCCATCCGTCACCTCTGACAACTCCCACGCCCTGTCCCAGGTGCCTTCCCCCCTCTGGA TCATGCCCCCGGACGAGTACTGTCTCATGTGGGTCACTGCCGACCTGGTCTCCTTCACCCTCATCGTGGGCATCTTCGTGCTCCAGAAGT GGCGCCTGGGTGGCATACGGAGCTACAACCCTGAGCAGATCATGCTGAGTGCTGCGGTGCGCCGGACCAGCCGGGACGTCAGCATCATGA AGGAGAAGCTTATTTTCTCAGAGATCAGCGATGGTGTAGAGGTCTCCGATGTGCTCTCCGTATGTTCAGACAACAGTTATGACACATATG CCAACAGCACCGCCACCCCTGTGGGCCCCCGAGGGGGTGGCAGCCACACCAAGACCCTCATAGAGCGGAGTGGGCGTTAGCTGAAGACAT GTCTGTCCCACCTGTACCTGACACAGAAGCTGGGGAGCCTAGGAGAGCTGGTGGAAGTGTGTCTGAACTCGGAGTGCTCTGGGAGCGGGC TCCACAGCCTCCTTGTGGGCTCCAGCCCCTTGTCAGCCGCAGCCTCTCTTGAGGGGGACTCCCTGTCTCCTGAGGCCCAGCTGGGCCAGG ACTCCATCCTTTCAGATGCCCCTGCAGGCCTGGGGCTCCTTCTGGGAAGTATGGGGCCTAGGGCTTGGTCCCCCTCTTCTGAGGCCCTCT CCTGTATCCCGACCTGGAAGCTTTGATGGGTCATGGGCCATGCCATACCCCCTGTGGCAATGGAGTGTGTGGATGCTCACCTGTGCCATC TGTCCTCCTGTCTGTGCCAGGAGGCACCTGAGTTCTCTGCTGTTATCCTGCCCCAAGGGCCTGGGCCGAGCCTCTACCTGAAGCAACTCT GCTCTTCCTGTCAGTCTCAAAGCACAAGGAGGTTCAGCCCAGGAGGAAGCCAGCTGCAATGTGGAGACACGTCCTCCTCCCCAACCCACC TCATGCCACCGCCAACCCCCTGCCCCAGGAGCGGGCCTGAGCCACGTCCTCTAGGAGCAGCTGGAGATGGCCAAAAGAGTGAGCTCAGGA CTACTGGATCCCATGCCCAGGTGTCCAGCAGACCTCAAGGCAGAAGGGTCACCTAACCCAGGAGTCCACAGACTGATGTGACCTCAGGTT CCCACATCAGTGGCCACAGGGCAGGGCCCACCTGGTAGAAGTGTTCTGGATATGGCCAGGGTGGGTGTGTGGCTAAGTGGGCCTGAACAG >In-frame_ENST00000418153_ENST00000336898_TCGA-N6-A4VF_PHF21A_chr11_45991366_-_GDPD5_chr11_75173934_length(amino acids)=799AA_start in transcript=200_stop in transcript=2599 MELQTLQEALKVEIQVHQKLVAQMKQDPQNADLKKQLHELQAKITALSEKQKRVVEQLRKNLIVKQEQPDKFQIQPLPQSENKLQTAQQQ PLQQLQQQQQYHHHHAQQSAAASPNLTASQKTVTTASMITTKTLPLVLKAATATMPASVVGQRPTIAMVTAINSQKAVLSTDVQNTPVNL QTSSKVTGPGAEAVQIVAKNTVTLVQATPPQPIKVPQFIPPPRLTPRPNFLPQWERLWFLLLTFTFGLTLTWLYFWWEVHNDYDEFNWYL YNRMGYWSDWPVPILVTTAAAFAYIAGLLVLALCHIAVGQQMNLHWLHKIGLVVILASTVVAMSAVAQLWEDEWEVLLISLQGTAPFLHV GAVAAVTMLSWIVAGQFARAERTSSQVTILCTFFTVVFALYLAPLTISSPCIMEKKDLGPKPALIGHRGAPMLAPEHTLMSFRKALEQKL YGLQADITISLDGVPFLMHDTTLRRTTNVEEEFPELARRPASMLNWTTLQRLNAGQWFLKTDPFWTASSLSPSDHREAQNQSICSLAELL ELAKGNATLLLNLRDPPREHPYRSSFINVTLEAVLHSGFPQHQVMWLPSRQRPLVRKVAPGFQQTSGSKEAVASLRRGHIQRLNLRYTQV SRQELRDYASWNLSVNLYTVNAPWLFSLLWCAGVPSVTSDNSHALSQVPSPLWIMPPDEYCLMWVTADLVSFTLIVGIFVLQKWRLGGIR -------------------------------------------------------------- |
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Fusion Gene PPI Analysis for PHF21A-GDPD5 |
Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in |
Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
Hgene | Hgene's interactors | Tgene | Tgene's interactors |
- Retained PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
- Lost PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
- Retained PPIs, but lost function due to frame-shift fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Related Drugs for PHF21A-GDPD5 |
Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.8 2021-05-08) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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Related Diseases for PHF21A-GDPD5 |
Diseases associated with fusion partners. (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Hgene | PHF21A | C1832588 | Chromosome 11p11.2 Deletion Syndrome | 2 | GENOMICS_ENGLAND;ORPHANET |
Hgene | PHF21A | C0036421 | Systemic Scleroderma | 1 | GENOMICS_ENGLAND |
Hgene | PHF21A | C1849193 | PEELING SKIN SYNDROME | 1 | GENOMICS_ENGLAND |
Hgene | PHF21A | C3714756 | Intellectual Disability | 1 | GENOMICS_ENGLAND |
Hgene | PHF21A | C4721610 | Carcinoma, Ovarian Epithelial | 1 | CTD_human |